ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX203391 | Plasma Cells
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◣ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

MLLT1
UTP25
CDIP1
RRP15
IFI16
G6PC3
LSM12
EEF1AKMT3
METTL1
CYP27B1
RRP1B
HSF2BP
DDX42
CCDC47
BCKDHA
EXOSC5
ZCCHC7
NME1-NME2
NME1
TRIM59
ANKRD23
NPM1
UBE2Q1
CHRNB2
THAP5
DNAJB9
SCFD2
SUPV3L1
RAB4A
UTP11
FHL3
UTP20
PWP1
KLF16
RTN3
ATL3
MEX3D
TWNK
MRPL43
LZTS2
COA7
RRP12
CARD9
GPSM1
PMVK
SGTA
THOP1
XKR9
LACTB2
USP2
HDAC2
PMS2
AIMP2
INO80
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
KDM4A
RPSA
NCL
AP3D1
HBP1
RPUSD4
FAM118B
BECN1
PSME3
NSUN5
IRF5
QTRT1
TGDS
GPR180
CKS2
SECISBP2
TBCB
POLR2I
OVOL3
MRPL3
COPS7A
P2RY11
PPAN-P2RY11
PPAN
ANGPTL6
SPRYD4
WDR4
PINX1
UBA52
SLC19A1
MSL1
PAK1IP1
C6orf52
SLC49A4
HSPBAP1
GET4
HPSE2
GOLIM4
SNRPE
NCBP2AS2
NCBP2
KDM3A
C10orf88
TBL1X
LARP1
SHC1
FLAD1
CKS1B
EIF3B
UTS2R
ARFGAP3
RRS1
ADHFE1
PES1
NAXE
GPATCH4
CTSF
UNC45B
NLE1
TTC27
HCN3
CLK2
CCDC116
CCT2
TSN
CCDC86
LONP1
CATSPERD
PBRM1
GNL3
STAT1
AIP
QTRT2
CCDC191
TMA16
CYFIP2
ZFYVE27
PNPO
URB1
SFT2D2
DERL3
RBM28
PRR22
DUS3L
PLD6
ODC1
THNSL1
PNO1
EIF2B3
RTN4RL1
DPH1
MATR3
NOM1
ZFR
MEF2D
SUGP2
ARMC6
TRUB2
COQ4
ADNP
ARSG
OSER1
RHBDD1
EPOP
PALD1
FOXO3
SLC25A26
RIOK2
KCNN3
ELAVL3
MEIG1
DCLRE1C
TMED1
TMEM248
VMP1
PTRH2
GOLGA8A
TMEM268
SAE1
SERPINF1
EIF4G1
UBAP2L
C1orf43
CENPF
WIPI1
SLC39A3
DHDDS
CLN6
ZMAT1
NOP16
HIGD2A
ZNF280D
STXBP2
XAB2
PCP2
GNB4
N6AMT1
TAF4B
LAMP1
RNF145
HEATR1
TBC1D15
RPA2
SEH1L
RNASEH2C
KAT5
GABPB1
NAT10
TOP1
PPAT
PAICS
PPA1
CYTH1
CD320
SNX5
MGME1
RFC1
RPL35A
IQCG
LMLN
TEF
NOC3L
MET
IARS1
ZNF131
HDGF
MRPL24
URB2
TAF5L
DBP
CA11
AKAP10
SIT1
CCDC107
ARHGEF39
MYBBP1A
GGT6
ZBTB7B
LENEP
SEPTIN9
RNF32
DISC1
PRKAR1B
TRMT1
NACC1
FOXRED2
CRY2
ZNF473
VRK3
UNC93B1
ELOVL3
ZNF358
MCOLN1
MDN1
CASP8AP2
SCAMP4
ADAT3
CBR1
SETD4
CYP2R1
HMGA1
WDR74
STX5
NKIRAS1
FOXK1
NR1D2
PPID
SIRT1
MTHFD2
SLC5A6
CAD
ATRAID
ABCA1
UBFD1
EARS2
ZCWPW1
PPP1R35
MEPCE
WDR26
ZNF783
WASHC2A
TBRG4
SPOP
PLEK
PDE12
RPAIN
NUP88
MRTO4
EMC1
ANAPC10
ABCE1
ZNF202
C6orf62
STK25
C1QBP
SLCO4A1
CDC16
CASP8
SMIM12
PER2
MED26
VPS52
RPS18
B3GALT4
AK2
EPB41L4B
MSL2
SLC12A9
MFF
SURF6
TXNIP
FBXO32
RANBP2
CBX5
HNRNPA1
AP2S1
ARHGAP35
TFB2M
CNST
RGS16
THOC5
RRP9
PARP3
PHB
DNAJC11
DDX21
RAB24
PRELID1
MXD3
FBXL20
RNMT
FAM210A
TCOF1
ZGLP1
FDX2
PNKP
AKT1S1
TBC1D17
BCL2L11
NOL7
PPP1R2
TIMM44
TMEM139
CASP2
CRYBB1
CRYBA4
BRWD1
YIPF3
POLR1C
LRRC73
RPP40
SELENOH
UBE2V2
UBE2G1
ST6GAL1
ZZZ3
KPNA4
JMY
NDUFAF5
ESF1
EPB41
TACR2
PGBD5
DIAPH1
PNPT1
ZBTB49
LYAR
PEX14
DFFA
CD68
EIF4A1
PPP1CA
RAD9A
SMYD5
PLA2G1B
RANBP3
TASOR
BCAS3
LTBP4
GALK2
LY9
TRMT6
MCM8
ROM1
EML3
B3GAT3
PTBP1
UNG
ALKBH2
YPEL1
SLC39A11
MRPL55
ZNF280C
NUP35
NADK2
NEK8
RPL23A
RAB34
PROCA1
TLCD1
ASPSCR1
CERK
YARS1
S100PBP
HES1
CLDN14
ACSS1
SENP2
RPL31
UBIAD1
RPL10A
PCCB
AKR1A1
RAD50
PUM3
NOP14
GRK4
CNOT4
SDAD1
ZNF292
SLC25A10
MRPL12
KCNAB2
REPIN1
MED20
BYSL
CD164
C12orf66
PAXBP1
DUSP23
ALG8
UBTF
PDE4A
RPL22
RNF207
HMOX1
H2AX
DPAGT1
C2CD2L
NEPRO
KLHL18
KIF9
DYM
RIOX2
DGAT2
NOL6
MNT
KRTAP5-11
UBAP2
CCDC126
ATIC
MMP23B
NOP2
KIF2A
UBE2S
GGNBP2
MYO19
PIGW
NT5DC3
ELP6
TFRC
PMEPA1
WASHC2C
ZNF124
TRAPPC6A
BLOC1S3
MPZL1
MSTO1
RECQL4
LRRC14
MFSD3
RSF1
AAMDC
GPT
DDX3X
TSPAN31
MARCHF9
CDK4
AGAP2
RPF2
FAM174B
CMSS1
DHX9
POLR1B
RPL9
LIAS
TTYH2
RPL38
CARM1
DUSP2
ASTL
RNPEPL1
DUSP28
ANKMY1
PHB2
SMARCA4
SSBP1
FAM222A
TTC26
MCM7
AP4M1
ARHGAP42
TMCO4
CEBPB
SRP19
KHSRP
C12orf45
PRPF3
AATF
VEPH1
DOHH
FZR1
RRP1
RABGEF1
RNPS1
EIF5A2
DHRS11
TNFAIP8L1
MRM1
TFAP4
NOLC1
EEA1
UBE2G2
CENPP
NOL8
ZC3H8
EZH1
MRPS28
HLTF
ZNF3
COPS6
BLCAP
PDHB
GIT1
GBA
IPO11
DIMT1
NACA
CCND2
MRPL27
EME1
LIG3
EVI5
PBX3
SLC3A2
CENPS-CORT
CENPS
LEMD3
FAM207A
WDR81
ABCF3
EIF4H
TMEM161A
PRELID3A
VMAC
NDUFA11
TXLNA
CAPS
PEMT
UBE2B
CDKL3
GART
GAR1
SRA1
SLC35A4
APBB3
EVI2B
EVI2A
NFX1
TOR4A
MBD3
INSR
HBQ1
HBA2
HBA1
PPFIBP2
HERC5
SMC3
CDK5RAP3
ABCF1
TP53I13
ABHD15
PIGM
MAP2K2
EXOSC2
PER1
VAMP2
DHX40
PHYHIP
PTMA
DYRK1A
RPIA
HDHD5
PRDX4
VPS72
PIP5K1A
NME2
PFAS
ZNF438
SOX12
SRSF6
EPB41L5
GDI2
PHF20
TAGLN2
PPRC1
VARS1
SOCS5
RSL1D1
TRPM7
CADPS2
SNRPD1
TMEM186
PMM2
RPL5
GGACT
EIF3D
MRPS35
ZNF785
TAF12
POLR3D
ACTRT3
MYNN
SERF2
SERINC4
HYPK
PPIF
KIF20A
BRD8
GIMAP2
SETD6
LRP2BP
ZNF692
TPRA1
MCM2
ANKRD37
TMEM185B
PCGF2
ARHGEF3
GCLC
AEN
RASA4B
SYNRG
REX1BD
EBNA1BP2
CFAP57
CALR
RAD23A
NABP1
PAAF1
COA4
RPL39L
REXO2
TMEM183A
KLF9
DPH2
B4GALT2
ATP6V0B
DMAC1
USP14
TEX15
UNKL
C16orf91
PERCC1
SLC33A1
TNFRSF10A
EIF3E
MAPK8
NT5M
EEF1AKNMT
MAGOHB
ACOT7
MFAP3L
SERP1
EIF2A
SEC14L1
UCHL1
GNL2
HSPA9
ADCK5
AP1G1
ARF4
POU2F1
VPS50
HEPACAM2
ANAPC1
PPFIA3
C19orf73
C6orf89
CXCR5
HSP90AB1
PPIL1
SLC35B2
SMIM20
SRD5A1
MAN1B1
UAP1L1
RGL2
PFDN6
WDR46
MARCHF8
ATP5F1A
ITFG2
MYO1G
NDUFS1
EEF1B2
FAM78B
NASP
NLRP1
LARS1
SRSF7
DNA2
LZTFL1
COX10
COQ8A
FAM76A
NR1D1
TRMO
MCRS1
URI1
NME6
SMARCA2
ATP6V0D1
AGRP
ARHGAP32
RPS2
RNF151
TBL3
NDUFB10
RPL3L
ZBTB11
RPL24
CKLF-CMTM1
CKLF
TK2
NRAS
KCNQ5
TMEM97
MRPS33
LARS2
ECHDC1
RPS19
IPO7
NOL10
UMODL1
PACRGL
DYRK3
MGA
RPL17-C18orf32
RPL17
C18orf32
RPGRIP1
ATP5MC1
FANCF
LRRIQ4
LRRC34
FAH
CREBRF
ZNF142
BCS1L
PARL
MTR
WWP2
NOB1
MRPS18C
HELQ
PCID2
CUL4A
CKB
TRMT61A
POLI
PPP2R3B
ATP9B
RNF44
TRIM8
YPEL5
CDHR2
IKZF3
PPP1R1B
CCDC6
ZPBP2
NEUROD2
TOR1A
PDPR
EIF4EBP3
TSR1
SGSM2
TM9SF1
IPO4
PRR19
PAFAH1B3
TIMM22
C12orf50
C12orf29
TMED4
DDX56
SLC41A2
CIRBP
FAM174C
SHFL
GLS
TIGD2
SCAMP3
FAM189B
TMEM236
PGRMC2
CXCR3
XRN2
PISD
MRPL1
TOMM70
LNP1
CCDC106
U2AF2
FAM3C
TET3
YJU2
IL9
DHX37
BRI3BP
DNAJC1
NARS2
CAND1
NOP58
VPS29
RAD9B
CCDC61
ZNF771
AKAP11
SNX15
ARHGAP45
MRPL15
RBM19
ANP32B
GUCY1B1
NIFK
MRPS21
AURKB
BAX
HPS5
GTF2H1
RCCD1
TIAL1
SF3B3
COG4
SH2D2A
NTRK1
FKBP11
PAFAH2
PRKD2
LAG3
CHPF2
ABCF2
INTS7
DTL
UCKL1
SYCE2
PSMD9
HPD
TMEM109
PRPF19
RABGGTB
TMEM192
EEF2
EIF4B
PCBP1
UBALD1
MGRN1
MRPS18B
ATAT1
TXNL4A
RBFA
PIK3IP1
NOX5
SPESP1
RNASEH1
BHLHA15
VSIG8
GALNT14
ZBTB37
RPA3
UTP4
DERPC
CHTF8
HNRNPU
WDR17
NUP153
CCDC124
PRMT3
CNPY3
ABRAXAS1
KIF27
KLF4
TTLL12
LSM6
SERBP1
MXI1
ARID3B
PNPLA7
MRPL41
SP1
HSPE1-MOB4
HSPE1
HSPD1
KMT2D
RHEBL1
CRNKL1
CFAP61
UPF2
SRM
PRCP
DDIAS
POGK
UBQLN4
LAMTOR2
MRPL42
KLHL32
NDUFAF4
KLF11
MPDU1
LOC100996842
SOX15
RPL37A
ING5
RHOG
RIOK1
CAGE1
USO1
SMG1
SFXN4
KCNC3
ATP5MC2
PARD3B
SNAPC2
CTXN1
RCL1
SMIM11B
SMIM11A
ACAD9
ZBTB10
ANXA2R
EEF1E1
POLR3H
MRPS17
RPL27
IFI35
USP21
UFC1
GOLT1A
PPP1R13L
POLR1G
STX4
POLE4
PIK3R3
TXNRD1
IRF2BP2
SCAP
FAM111A
STMN1
CLN3
APOBR
USP36
MRPL17
CMTR2
GNA12
CTU1
DHX36
NFKBIL1
DDX39B
ATP6V1G2
H3-3A
RNF227
PTP4A2
SH3BGR
LCA5L
ERLIN1
GEMIN4
TSACC
CCT3
GFM1
IMMT
MRPL35
PPFIA4
TOMM20
KLF1
GCDH
DNASE2
CNNM2
PET117
KAT14
CTPS1
VPS8
ALDH3B1
DIDO1
GID8
FRAT2
WDR36
ABHD17A
PLXNA1
MAN1C1
TMEM79
SMG5
PLD3