ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX1078844 | HCT 116
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◣ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

RGPD2
RGPD1
MTRNR2L1
MTRNR2L8
MTRNR2L2
MSH3
DHFR
MTRNR2L10
MTRNR2L9
PGK1
DUX4
COL23A1
IFRD2
CALCOCO1
UCKL1
SCNM1
LYSMD1
TMEM115
CALR3
C19orf44
TCEA2
PHB
SMPD3
BOD1
MMACHC
CCDC163
CLPB
FEM1A
HIKESHI
MRPL24
PAFAH2
PNKD
AAMP
ST3GAL2
GSPT1
CHMP4B
SLC39A1
NUDCD1
TSNAXIP1
RANBP10
BTRC
TMTC3
CEP290
CRTC2
PPRC1
KBTBD6
AP2S1
PANK4
HES5
PEMT
AHCYL2
PRCC
MICOS13
HSD11B1L
KBTBD7
DDX23
PPP1R12C
C1orf159
LARS1
UNK
INVS
ERP44
CTU1
PPP1R12B
PHF12
ZNF225
ZFYVE1
H3-3B
VCPIP1
C8orf44-SGK3
TSSC4
MAD2L1BP
GTPBP2
GTF2H4
NTAN1
BANP
SYMPK
FOXA3
ZNF444
ORMDL3
TNFAIP1
IFT20
NPRL2
CYB561D2
SLC35B4
SCAF1
RRAS
DSTYK
UBQLN4
LAMTOR2
GFUS
FASTKD1
SNX17
EIF2B4
RPIA
STAU1
FRG2C
WDPCP
MDH1
TTC13
ING3
ABCF2
STK25
SLC4A2
CDK5
CCDC146
TTC33
SUFU
ACTR1A
SCRIB
ZSCAN22
CCP110
GATB
INTS9
HMBOX1
C16orf91
TIMM21
FBXO15
TLE3
ZNF749
CHPF2
WNK1
COX7C
EMILIN1
MED15
NOP14
GRK4
BOLA1
JOSD2
ASPDH
SSBP1
AP2M1
UBR2
ZFYVE19
DNAJC17
CLEC16A
DEXI
ZNF337
TMEM59
ODF3L2
WDR87
SIPA1L3
TSC2
NTHL1
TMEM127
CIAO1
WDR97
MAF1
TFEB
ZNF56
ZFYVE28
SIRT2
NFKBIB
PHF13
C19orf53
TRAPPC3
TOR1AIP2
TOR1AIP1
UBAC1
PEX14
DFFA
CFAP99
RPS7
SMARCAL1
BUB1B
DESI2
KMT2B
CBARP
ATP5F1D
RIC8B
NUF2
VPS50
HEPACAM2
TMEM70
ELOC
FBXW11
DCAKD
RPL8
ZNF189
MRPL50
CTF1
BCL7C
NMT1
TFPT
PRPF31
FBXO46
ING4
AURKAIP1
IPPK
TMEM208
LRRC29
RPGRIP1L
FTO
CCDC90B
SESN1
DYNC1I2
ZNF34
MEIOSIN
BUB3
PSMD11
RPS20
EMP3
RANGAP1
SEPTIN9
ZNF235
SOX6
C11orf58
NDUFS2
ADAMTS4
USP48
RNF151
FRG2
RAB5C
RAB1A
CAPN15
ATP5PO
THRAP3
SLC25A19
LETM1
DCP1A
PRRG2
NOSIP
THYN1
ACAD8
TMEM160
FBXL19
CNIH4
ZNF169
TRAF7
ZNF420
NUDT13
PDE6D
COPS7B
OSCAR
NDUFA3
PEX26
CCDC150
TMEM101
FBXO48
APLF
CCAR2
C8orf58
ZNF224
B3GALNT2
TRAK2
STRADB
RALBP1
VIPAS39
AHSA1
CLP1
CHCHD3
GPANK1
CSNK2B
ZC3H11A
ZBED6
MARS1
ARHGAP9
PTDSS2
RBL1
SNX27
MED23
ZNF140
TTBK1
TBL3
ZNF354A
DDX49
COPE
ZNF350
STK17A
ZNF554
KAT7
MYLK4
RABAC1
NME1-NME2
NME1
LY6G5B
CLDND1
WBP1
INO80B
ZNF384
FAM193A
RPL18A
RBM6
LMNB2
TMEM102
FGF11
PANK3
TMEM43
CHCHD4
CTDP1
FAM185A
PA2G4
BIRC5
SMUG1
UFSP2
C4orf47
GPKOW
CCDC174
NFXL1
SERPINI1
PDCD10
CDK5RAP2
HTRA2
DQX1
YPEL3
TBX6
UBE2Q1
SF3A3
UTP11
WRNIP1
UCHL5
RO60
ZBTB45
ZNF230
NUP153
ZNF37A
LTA4H
FAM222A
CNOT4
ZW10
PNPLA6
AKIRIN2
GPAA1
EXOSC4
FAM228B
CNOT1
ZNF133
RPS6KB2
TMEM245
WDR74
RPS19
UBL7
BICD2
ZNF227
DUS3L
ZNF527
HBP1
SLMAP
SDCCAG8
CEP170
RPS3
ZCCHC4
SLC33A1
WBP2
PHF23
GABARAP
POLR2E
FDPS
C19orf67
ZNF226
NDUFS7
C6orf47
SNRPE
SNX1
CIAO2A
PIGU
NKIRAS1
SPHK2
RPL18
FAM83E
SYPL1
PSENEN
LIN37
RALGAPA2
HSPA13
MXI1
LAMP1
RPS26
NFKBIL1
ATP6V1G2
RPS13
PGBD4
EMC7
SEC61A1
CDCA8
C1orf109
DVL2
TIMM13
SCAMP4
ADAT3
COMMD9
LUC7L
SF3B6
PHB2
ZGPAT
ARFRP1
ZNF2
DGAT1
PCM1
INTS1
PTBP1
SYNGR4
QTRT2
CCDC191
LRFN3
CFAP410
NCLN
METTL26
ZNF32
ZNF547
TRAPPC2B
AHCTF1
MTMR9
SPATC1L
RPP40
PSMD4
TXNDC9
EIF5B
WDR53
FBXO45
RPL15
SEC11C
TPGS1
NDUFS3
KBTBD4
GALK2
TNFRSF12A
THOC6
HCFC1R1
ZNF419
HEXIM2
MED27
RPL29
TTC1
AQR
CIC
CAND1
ZCCHC8
TMEM69
GPBP1L1
CWC22
ZNF500
ZNF484
ENOX2
RAB29
SLC17A7
SLX1B
SLX1A
BOLA2B
PES1
DNM1L
EIF2D
ASXL1
BOLA2
ZNF343
ZNF26
TMEM186
PMM2
RPL37
RPL23A
RAB34
GSK3A
CDK8
TERF2
WAPL
MED11
FARSA
CALR
PRR14
OPA1
USP35
KCTD21
GINS3
IGSF8
MAX
ZNF451
FAM207A
MRPL20
MGRN1
RAB30
PSMD2
COPS7A
CCNL1
ZBTB7A
TSACC
CCT3
NCBP2AS2
NCBP2
RCAN1
CAPG
CWC25
UBE2J2
PSMC4
GID4
ATPAF2
DDX47
NOLC1
CDC25C
LSG1
EIF1B
ZMAT5
UQCR10
SSR3
UBA52
ILF3
ALG10B
BOLA2-SMG1P6
SSR2
BOD1L1
MUS81
CFL1
VAPA
RBBP5
RPS27
RAB13
METTL3
SLC38A9
PSMF1
ZNF747
EML6
RPS3A
ZSCAN32
ZNF174
ZMYND10
PEX12
TRIP4
L3MBTL2
COPS2
ADSS2
KBTBD8
SCAMP3
TMEM222
USP31
KANSL1
TRIP10
GPR108
THAP1
LEMD2
KCTD5
WASF1
CDC40
TMEM199
POLDIP2
FAM53C
SUGP1
MAU2
GPR137
HIRIP3
EXOC4
PPP6C
SELENOH
ZNF805
FHIT
RPL27
CLPP
PRKCI
MTR
GFM1
ZNF862
H4C15
H4C14
ZNF17
TOR2A
PARL
ZNF567
RNASEH2C
UTP3
PSMD3
MEN1
VPS4B
CCND3
NCDN
KIAA0319L
RETSAT
CARS1
TSN
DPP9
THAP11
NUTF2
CENPT
ZNF25
POLR2J3
ZNF773
PPP1R13L
POLR1G
ZSWIM9
LIG1
SASS6
GSTA4
ZNF586
C12orf43
CSRNP2
ZNF277
DOCK4
NDUFB5
MRPL47
RRP15
RACGAP1
RPL22
AMD1
ATP5MF-PTCD1
ATP5MF
SKP2
LMBRD2
ESCO2
TOR1A
EIF3C
XPOT
ARMH3
ABRAXAS2
PRKCSH
CCDC151
CA11
POLRMT
ALG10
EIF3CL
SIRT4
PSMB4
SMN2
SMN1
ZNF584
SLC50A1
DPM3
AKAP8
DEDD
TRMT1L
SWT1
CCDC124
EIF3D
B4GALT7
N4BP2L2
VEZT
FGD6
YJU2
TSNAX
TMEM33
FBH1
ANKRD16
VKORC1
ZNF684
MRPS23
STMN3
RTEL1
MEA1
EIF2S2
GPT2
ARHGEF1
SERP1
EIF2A
CXXC1
DHX8
AP2B1
CIAO3
TUT1
SNAPC3
PSMB6
JRK
ZNF45
COPS8
ATP6V0B
ZNF436
KLHDC3
SCYL3
VRK1
ZNF605
STX18
CAPN10
WDR46
PFDN6
TMED9
TMEM41A
IPO7
INTS4
KATNB1
CNOT6
ZNF165
RAB3C
SF3B2
GAL3ST3
MRPL54
APBA3
ZNF628
GGPS1
ARID4B
ATP13A1
RAB7A
IFRD1
FRA10AC1
NUP205
INTS12
GSTCD
NOP53
ZNF548
MRPS18C
HELQ
SKIV2L
NELFE
MRPS16
CCNT2
ZNF764
YIPF2
TIMM29
STX16
KHDC4
ZNF101
FBF1
CRK
DPH2
PUM3
GBA
KRR1
SFXN5
C1orf54
APH1A
COG2
DARS2
CENPL
ZMPSTE24
ABT1
NSA2
GFM2
CANT1
MAMSTR
TOMM22
ITPR1
DHX33
BET1
MRPL1
OAZ3
IPO13
KLHL20
RBM28
R3HDM1
ZRANB3
SNAPIN
RPL12
LRSAM1
MIA3
SNAP47
JMJD4
RWDD1
MORF4L1
ZNF585A
GEMIN6
ZNF416
BRIX1
SERBP1
EIF3F
MRPL9
ZC3H10
RPL41
USP15
RFX1
MYBL1
UCK1
FAM168A
NOP16
HIGD2A
ABCC5
ZNF599
TIMM22
DOHH
PPIP5K2
GIN1
CNPY2
TLE4
DCAF1
DMAC1
RAD52
RPL34
DNAJC28
ZNF180
ZNF691
TMEM79
SMG5
TATDN3
NSL1
MRPL3
ACLY
UBE2V1
DNAJC14
TRUB2
COQ4
SART1
TRABD
FBXO38
WIZ
RANBP1
USHBP1
RUVBL1
BABAM1
PARK7
ZNF221
RAB8B
TRUB1
SLC12A6
ELP6
UBXN8
EMSY
MED24
TPR
ODR4
ETFDH
C4orf46
TM9SF4
TPRKB
NUP107
SEC13
TMEM94
SH2B1
RAD51AP2
NUMA1
LRTOMT
SEL1L
LTN1
SLC39A13
SETDB1
ZNF565
ZNF146
TAF8
DNM2
PRPF4
CDC26
CEP57L1
ZSCAN5A
TMEM88
REXO2
PRAF2
SH2D6
NAA38
CYB5D1
GTF2H2C_2
ZNF776
MRPL21
IGHMBP2
MVB12A
SETMAR
NR1H3
ACP2
USP30
KIF15
KIAA1143
NMNAT1
LZIC
ZIK1
TOGARAM1
KLHL28
FOXJ3
NFKB2
TMEM258
FEN1
CHCHD6
NR1H2
MRPL44
DNAJC11
NFATC2IP
UBE2N
TUFM
ZC3HC1
PEX3
ADAT2
CEP350
BLOC1S5
WASHC3
H4C12
MPI
HSP90B1
TTI2
ZNF460
WDR24
FIS1
WASHC4
ZC3H6
PCP2
TLE1
CCDC77
SHPK
TMEM109
CTNS
ZNF211
TRMT2A
MRPS15
CDK9
KPTN
SNRPB2
METTL18
C1orf112
TTLL11
GTF2H2C
DMAP1
MITD1
FLAD1
SLC24A1
INTS14
HSPH1
CMPK1
NSFL1C
LCORL
MYL6B
FCSK
CCDC59
STRN
IPO8
PCNP
COMMD2
CCDC117
MDM4
ZNF530
SNIP1
DNALI1
UBA1
RBL2
EXO1
GALM
ZNF668
ZNF646
TMEM230
CILK1
SPC25
ZNFX1
ZNF268
XRRA1
SPCS2
FAM149B1
ECD
CDK19
POMZP3
SLC39A3
NUP214
ERI3
CD2BP2
BDP1
MTIF2
ZNF155
C7orf25
NAPB
PSMC3
CUEDC2
TBC1D17
AKT1S1
MTF2
RNASEH2A
PRDX2
NARS1
AHCY
COPS4
FBXL18
MRPL34
PPP2R5B
ZDHHC16
EXOSC1
SMIM13
ZNF317
VPS45
TEPSIN
NDUFAF8
TEKT2
ADPRS
SHLD1
GTF2H2
NEDD8-MDP1
NEDD8
GMPR2
SPDYE14
SPDYE10P
SP2
TTC14
MITF
H2AZ2
STPG3
NELFB
ACP6
NIP7
COG8
ZNF302
YWHAG
PPAN-P2RY11
PPAN
ANGPTL6
DDX18
ABLIM2
CDC6
ZNF721
PIGG
SUCLG1
VAMP7
ZNF417
SLC25A44
ATE1
HSCB
CHEK2
CAP1
BRF2
ZNF286A
TOE1
MUTYH
HEXIM1
SLC37A3
GET4
PUS3
DDX25
RRS1
ADHFE1
SSNA1
ANAPC2
SLC30A6
NCOA3
PCNX3
MAP3K11
ZNF304