ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX014770 | NB-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◣ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

HMGCS1
MTRNR2L8
MSMO1
MTRNR2L2
MSH3
DHFR
FDPS
MXI1
FDFT1
MTRNR2L1
SREBF2
FRG2
MVK
ARAP1
UNK
H3-3B
HMGCR
GGT7
ACSS2
COL23A1
HSD17B7
RPL22
HYAL2
OGA
CYTH2
TMTC3
CEP290
PLEKHA8
SYNGR4
CHCHD3
VCP
GHDC
DLG2
TMEM126B
TSNAXIP1
RANBP10
PPME1
C2CD3
PSMD3
STARD3NL
ZNF335
RABL2B
RABL2A
PSMD1
MAPKAPK5
NME6
CACTIN
POLR3F
DZANK1
IPO13
TAOK3
SUDS3
RWDD1
DYNC1LI2
NUP85
PSMG2
CEP76
VDAC2
HSPA9
FAM187A
EFTUD2
CCDC103
NVL
VTI1B
NUP205
RPL21
POLR2E
TBCK
AIMP1
NCLN
GOSR2
MRPS7
GGA3
DCTN1
C19orf48
ATP5MG
STAM2
EXOSC5
BCKDHA
REXO1
ZNF503
STAM
SRD5A1
SKP1
HADHB
HADHA
TSNAX
FARSB
SEC61B
ALG2
BLCAP
TSN
LYRM4
FARS2
UPF2
PES1
ZNF576
IRGQ
SLC35B1
ACTR10
NDUFA4
PNO1
PAK1IP1
C6orf52
CAPRIN1
DPH6
TTC8
PSMD12
COX7A2L
GOLGA5
SUPV3L1
RBBP5
VARS1
SART3
ISCU
RPS23
ATP6AP1L
TMED1
MRPS5
RBKS
BABAM2
ZRANB2
FRG2C
IQCG
PI4KB
SMC2
ANAPC7
RPL35A
PDAP1
BUD31
EIF4ENIF1
PCBP1
SELENOF
HS2ST1
NEUROG2
USP1
ADK
AP3M1
ICE1
FAM104A
C17orf80
UFM1
RABGGTB
XPNPEP3
ST13
RPS12
PROSER1
NHLRC3
SF3B3
COG4
RPS27A
CLHC1
NEUROG3
OSGEP
APEX1
TM9SF1
APOM
BAG6
COMMD1
CCT4
PAF1
HES1
DUX4
PTGES2
PDE6B
HES3
NFKBIL1
DDX39B
ATP6V1G2
CDX2
UBE2I
RPS29
LRR1
PIN4
FZD8
OR6B2
NDUFA10
VEZT
FGD6
ARHGAP11A-SCG5
ARHGAP11A
PMAIP1
MRTO4
EMC1
ARHGAP10
TAF9
RAD17
AK6
ZP4
SUCLG1
HOXA4
ATOH1
NEUROG1
EIF2S3
SEC11C
RPL7
RDH10
STK36
RNF25
BICRA
ZGPAT
ARFRP1
BNIP3
PDE12
LBX1
IGFBP2
SKIL
NEUROD1
GADD45GIP1
OAZ3
MRPL9
HOXA2
ID2
RARB
INSM1
BBS9
LEFTY2
TPM1
CNPY2
GTF3C4
DDX31
HOXB3
PCBD2
DAPL1
IGFBP6
CDCA7L
PDHX
APIP
HOXA3
DCTN3
CDC73
CCDC200
RPN1
DLL4
ARID3C
PHOX2B
C16orf91
TMEM120B
ANKLE2
CCN1
ST18
DLX4
LZTS1
PDHB
CCDC33
ZNF383
PRUNE2
SYBU
PRRX1
ID3
RARA
GORAB
MSX1
DUSP6
TLE4
SP5
TPRA1
MYLK4
RBPJ
FOXP2
TMEM107
ANK2
FGF19
ARID3B
NFE2
DNAJB7
LRATD2
KDM2B
TLE3
ZNF746
CLGN
SOAT2
TLE2
CNTN1
GATA4
RGS12
TMEM70
ELOC
MALRD1
MYRIP
ALKBH5
MRPL38
DSCAML1
RBBP7
TRIP10
GPR108
SMPDL3A
GADD45G
CCNDBP1
POP5
GRSF1
ERRFI1
NR2F1
KAZALD1
ARSG
KDM8
DMBX1
METTL24
HOXB4
USP17L20
RUNX1T1
MEIS2
CR1L
SPATC1L
CYP26A1
FOXP1
USP17L22
PRDM12
HOXC4
TRABD2B
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
KMT2A
ZFHX4
MRPL34
ABHD8
TBX3
HOXC5
MSX2
PAX6
BFSP1
RASSF2
IER3
FLOT1
LPIN1
EVA1A
NDUFS7
SH2B1
NEK3
TCF7L2
SPCS1
GLT8D1
FGR
IFI16
PKDCC
HOXB1
PLEKHO2
INAFM2
HOXA1
TMPPE
MBD2
GLB1
CBX4
DBX1
CACNA1D
SH3BP2
AXDND1
RNF149
UPF3A
SULF1
CS
METTL11B
CITED2
ABLIM3
ZNF608
LYL1
RPS10-NUDT3
RPS10
KDM6B
KAT6B
VOPP1
HNRNPA2B1
CBX3
HUS1
DHRS3
TMEM14A
HEXIM2
PANK4
HES5
GTF3A
ETFBKMT
TESC
LIN28A
RPS24
POLR3A
NELFA
DDA1
HSPA1B
ARID5A
ABCG2
SRSF11
LRRC40
TLE1
RAI14
NEO1
STK38
ARHGAP24
ZFHX3
KCNAB2
JAK3
PDZRN3
NUTM2D
SP2
PARK7
CCPG1
C15orf65
TIGD1
EIF4E2
HNRNPD
FRAT2
RPS6KA1
ID1
SEC14L1
SMC6
GEN1
SASH3
C11orf24
C12orf73
MRS2
SLCO4C1
PHC2
ATG16L2
HOXC6
SNCG
MMRN2
KIF21B
HOXD3
NCOR2
KDM3A
GRHL3
PRDM10
SLC7A5
UBXN10
TBC1D8
PAX8
CCDC88A
SPECC1
LYPD1
BRWD1
ARHGEF10L
NADK
CATSPERG
ERCC1
NCOA2
FGFRL1
DGKZ
ENO1
PLAGL1
WDR6
KLF17
NBEAL2
BIN2
SNX1
CIAO2A
SKIV2L
NELFE
SIRT4
NKD1
EFHD2
OTX1
FAM110A
CPSF4L
ADM
USP17L21
USP17L12
USP17L11
TMEM104
NAT9
LPCAT3
MTMR4
REV3L
DIAPH1
NBPF1
USP17L18
EMP3
CCDC114
ZNF76
TRAF4
PLEC
MEF2C
CAMTA1
USP15
SNX3
LRRN4
WNT10B
RARG
MEF2D
KMT2E
SOX21
LNPEP
CABIN1
PPP1R18
RASSF5
SPG7
CDC42EP3
DENND2D
CCDC174
ZNF367
DIAPH3
DDX3X
REC8
IMPG1
LIG3
CBFA2T3
SHOX2
RSRC1
POR
ZCCHC3
ZSWIM6
NFKBIA
IQCH
AAGAB
TYRO3
ZNF414
ZDHHC1
CD38
INAVA
ING1
VAV1
HEBP2
TRERF1
BCL3
CMTR1
TUBB
RAC2
ATP23
PNKD
CNOT2
LRIG3
FTL
IQGAP2
PCNA
SYNPO
POLR2J3
SPACA1
GPAA1
EXOSC4
MEOX1
RNASEH2B
LRIG1
MINDY2
OTUD7B
NTRK2
PKN2
PKM
CLDN2
H6PD
PPIB
PDPN
RXRA
TNFRSF19
RAB11B
NDFIP2
MAPKAPK3
RYBP
SHB
CDX1
ANKRD1
SMARCD2
SMAD3
GALNT10
PLCB2
USP3
NKIRAS1
PDE4D
ADCY7
PCTP
IFRD2
PEX14
DFFA
YTHDF2
FAM120B
CEP41
PRDM1
ARHGAP4
CYP51A1
LRCH4
FBXO24
CFD
MRPS24
SLC35E2B
HESX1
PXYLP1
TBRG4
ADORA2A
HIBADH
ARIH2
TXNRD1
TUBB3
NR1D2
RNF139
SH3TC1
CYCS
ZDHHC4
ZNF740
CSAD
RNF166
IGF2BP3
CNTN4
SP7
BNIP2
DYNLL1
MECOM
BAIAP2
SOD2
PIK3AP1
KANSL3
FER1L5
SBF1
ARID2
LTBR
DPP9
ANKMY1
ERI3
CLIC4
SEMA6D
NR2C1
CPT1A
KCTD6
ZBTB25
ZBTB1
DTX4
AKIRIN1
IL6R
PRSS56
SEC22B
KIF26A
DTNB
TTI2
ATXN1L
SLC35E2A
CYTH4
AGO1
TPST2
MYEOV
FOS
PTGES3
LRGUK
ZFX
RBL2
HAND1
HOXB5
HNF1A
SRPRA
FCHSD2
MBD6
DDIT3
TMEM222
SSX2IP
RND3
HHIP
PCDH11Y
FAF2
NXPH4
C12orf29
ZNF3
ARHGEF1
ADGRL2
UPP1
CASC3
CALM2
ZNF341
DMRT3
CD164
CTTN
SLC39A13
SLAMF8
TYROBP
ANKRD13D
SLC25A6
TRMT6
MCM8
TBX2
RNF103-CHMP3
RMND5A
AHDC1
CSRNP1
SNAPC3
BAZ1B
SPATA25
LAPTM5
PRRC2A
AIF1
USP42
MYADM
NOTCH2NLA
UNC13D
STX18
CDC42EP2
SLC10A2
SBNO2
CLTC
SEMA4D
PIP4P2
ARHGAP45
MAP2K1
VANGL2
MAD1L1
CXXC4
SYNJ2
ZNRD2
MTF2
KCNH2
FAM89B
EHBP1L1
RXRB
IL21R
PPCDC
MTCH1
DGAT2
CENPH
SLC43A3
SEH1L
DNAJB8
ZNF25
RNF125
H2BC5
H1-4
PHF19
RASGRP2
LYPD6B
ERLIN2
PEAK3
THRAP3
COX5A
WDR59
MRPS31
USP17L15
NAGLU
GFRA3
NOTCH2NLC
MIDN
PDE1B
MAP1S
EIF4H
KRI1
CDKN2D
TTYH1
EPM2A
MYO10
RAD50
PIKFYVE
PKNOX1
ZBTB17
KAT6A
SDE2
ARL4A
UROD
HECTD3
BHLHE40
GATA3
NR1D1
HSD17B8
GPSM3
FBXO41
SMPD1
QPRT
ZNF595
RFESD
ADAM17
SALL1
STRADA
ITPRIP
WT1
CCDC88B
KEAP1
ARHGEF38
ACOT2
RWDD2A
PGM3
SCARF1
FMNL1
TMEM123
CPVL
CHN2
MC1R
PRKCD
MTRF1L
WTAP
BCAT2
RASL10B
LSM5
AVL9
MAGEF1
GRK6
CPNE5
RCOR1
NUBP1
CBWD5
CBWD3
NIBAN3
SERPINB1
PRKDC
MCM4
GAD2
SLC39A7
PANK2
MYCBP2
ZNF318
NTAQ1
ASNS
USPL1
SLC22A2
HMGB1
H3C12
H2BC17
H2AC17
PEX3
IFNGR1
ADAT2
TCHP
KRT20
ATAD3B
UBL7
SCMH1
DYNLT1
DONSON
VPS37C
C1orf159
HES7
SH3BGRL3
FXYD2
GPX4
NOTCH2
OR2L13
OR2AJ1
MAST2
GPATCH8
NGRN
MCU
SALL4
PNRC2
SACM1L
CISH
TCF4
TIGD5
EEF1D
CBWD6
BNC2
EOLA2
RER1
MORN1
RGL1
ZNF436
SCAMP2
DPEP1
ARF3
OST4
CAPG
RPL17-C18orf32
RPL17
C18orf32
RUNX1
RNPEPL1
GRIP1
ARHGAP27
BUD13
KLHL25
LIX1
NIBAN2
DDX23
LGALS1
FAM227B
FABP5
DTWD1
YBX2
GABRB2
ARHGEF18
NCBP2AS2
NCBP2
SPIN1
ATAD3A
GPR176
USP21
NOTCH2NLB
KIF1C
INCA1
TAF12
KMT5A
CCDC59
PGK1
CYB5R4
CBX5
HPF1
DENND1A
TDP2
CNPY3
CNOT6
ACOT13
SCAF1
RRAS
JAKMIP1
NINJ2
SLC9A3R1
PTEN
MDC1
KLLN
RAP1GAP2
NUDT15
TMEM65
SYPL1
NANP
YY1AP1
MT2A
DAP3
C12orf65
UBE2L3
RIMBP3C
RIMBP3B
PCMT1
CDS2
PTP4A3
NMNAT1
LZIC
CEP135
GADD45A
ASB1
ARID1A
TSHZ1
TSPAN4
POLR2L
GOLIM4
SPTBN1
ATG5
APBB1IP
CACYBP
CCNL1
RNF130
GYPC
GBX1
SERTAD2
PTDSS1
MTERF3
MFN2
ZCCHC24
GSPT1
ANTKMT
EIF3D
EHD1
C21orf91
FOXD3
SNUPN
POU2F1
LTB4R
LTB4R2
LANCL2
EIF5
CIDEB
POLG
HYLS1
SQSTM1
TRAP1
PSMF1
HMGCL
PAM
FLI1
ZCWPW1
MEPCE
MTMR1
ZNF219
TKFC
SGK1
DDB1
ADAP1
RPLP1
RITA1
DDX54
NOXO1
GFER
ASH1L
GTF2H3
EIF2B1
IQCE
BRAT1
BANP
CTSC
DISP3
GFRA1
ASXL3
TAS1R1
NOL9
NOL4L
RTN4
UBIAD1
FDX1
IMPA1
CD63
SMG6
FKBP5
USP34
TMEM199
POLDIP2
MAPK6
THUMPD3
DLX2
FNTA
NAA40
DMD
SLC16A6
LAMP1
TEX46
KDM1A
RAB3D
NOC4L