ChIP-Atlas: Colocalization analysis

Colocalization analysis for CTCF

Query protein: CTCF
Cell class: Neural
Sort key: SRX7058946 | Glioblastoma
 
Color legends
ChIP-seq data:  H-H H-M M-M H-L M-L L-L N.D. Same  (Peak intensities are High, Middle or Low)

STRING data:  1000 750 500 250 0 N.D.  (Values = STRING's binding scores)

Downloads: TSV (text), GML (Cytoscape)
Links: Movie and Document for ChIP-Atlas Colocalization
Cell types  Exp. IDs CTCF's Colocalization partners

◢ CTCF: Average

◢ SRX4370433: Anterior temporal cortex

◢ SRX4370436: Anterior temporal cortex

◢ SRX5532358: Anterior temporal cortex

◢ SRX5532361: Anterior temporal cortex

◢ SRX5532364: Anterior temporal cortex

◢ SRX5532367: Anterior temporal cortex

◢ SRX199878: BE(2)-C

◢ SRX199881: BE(2)-C

◢ SRX099882: D54

◢ SRX099883: D54

◢ SRX103002: Glioblastoma

◣ SRX7058946: Glioblastoma

◢ SRX7058947: GSC23

◢ SRX080359: HA-sp

◢ SRX199896: HA-sp

◢ SRX199889: HAc

◢ SRX199890: HAc

◢ SRX080398: HCPEpiC

◢ SRX080408: HCPEpiC

◢ SRX080336: HRPEpiC

◢ SRX199893: HRPEpiC

◢ SRX668216: HRPEpiC

◢ SRX3145148: IMR-5

◢ SRX3124393: KELLY

◢ SRX3124394: KELLY

◢ SRX3124407: KELLY

◢ SRX3124408: KELLY

◢ SRX3124419: KELLY

◢ SRX3124420: KELLY

◢ SRX4155650: KELLY

◢ SRX4155651: KELLY

◢ SRX4155662: KELLY

◢ SRX4155663: KELLY

◢ SRX188970: Medullo

◢ SRX3433961: NB69

◢ SRX4174629: Neural progenitor cells

◢ SRX2731772: Neuroblastoma

◢ SRX2731775: Neuroblastoma

◢ SRX2731778: Neuroblastoma

◢ SRX4174623: Neurons

◢ SRX067516: NH-A

◢ SRX2166890: Retina

◢ SRX2166891: Retina

◢ SRX2166892: Retina

◢ SRX2166893: Retina

◢ SRX2166894: Retina

◢ SRX2166895: Retina

◢ SRX3433957: SH-SY5Y

◢ SRX3433959: SK-N-AS

◢ SRX080330: SK-N-SH

◢ SRX080356: SK-N-SH

◢ SRX100378: SK-N-SH

◢ SRX1529431: SK-N-SH

◢ SRX186638: SK-N-SH

◢ SRX4221460: SK-N-SH

◢ CTCF: STRING

Glioblastoma
 SRX7058946
CTCF
Neurons
 SRX4174623
CTCF
Retina
 SRX2166894
CTCF
Retina
 SRX2166895
CTCF
KELLY
 SRX4155650
CTCF
Retina
 SRX2166893
CTCF
SK-N-SH
 SRX4221460
CTCF
KELLY
 SRX4155651
CTCF
SK-N-SH
 SRX1529431
CTCF
Retina
 SRX2166891
CTCF
Retina
 SRX2166890
CTCF
HAc
 SRX199889
CTCF
HRPEpiC
 SRX668216
CTCF
KELLY
 SRX4155663
CTCF
KELLY
 SRX4155662
CTCF
HA-sp
 SRX199896
CTCF
KELLY
 SRX3124420
CTCF
KELLY
 SRX3124419
CTCF
Retina
 SRX2166892
CTCF
SK-N-SH
 SRX4221461
RAD21
IMR-5
 SRX3145148
CTCF
GSC23
 SRX7058947
CTCF
HRPEpiC
 SRX199893
CTCF
SH-SY5Y
 SRX3433957
CTCF
KELLY
 SRX3124408
CTCF
KELLY
 SRX3124407
CTCF
KELLY
 SRX3124394
CTCF
KELLY
 SRX3124393
CTCF
HAc
 SRX199890
CTCF
SK-N-SH
 SRX100378
CTCF
D54
 SRX099882
CTCF
HA-sp
 SRX080359
CTCF
SK-N-SH
 SRX080356
CTCF
SK-N-SH
 SRX186632
SMC3
SK-N-SH
 SRX080330
CTCF
SK-N-AS
 SRX3433959
CTCF
BE(2)-C
 SRX199878
CTCF
Medullo
 SRX188970
CTCF
D54
 SRX099883
CTCF
HCPEpiC
 SRX080398
CTCF
SK-N-SH
 SRX186638
CTCF
BE(2)-C
 SRX199881
CTCF
HRPEpiC
 SRX080336
CTCF
NH-A
 SRX067516
CTCF
HCPEpiC
 SRX080408
CTCF
Neural progenitor cells
 SRX4174629
CTCF
Neuroblastoma
 SRX2731775
CTCF
SK-N-SH
 SRX1529432
RAD21
Anterior temporal cortex
 SRX4370436
CTCF
SK-N-SH
 SRX186633
RAD21
Glioblastoma
 SRX103002
CTCF
Neuroblastoma
 SRX2731778
CTCF
NB69
 SRX3433961
CTCF
IMR-5
 SRX3145149
RAD21
KELLY
 SRX4155669
SMC1A
SK-N-SH
 SRX100542
RAD21
Neuroblastoma
 SRX2731772
CTCF
KELLY
 SRX4155668
SMC1A
Anterior temporal cortex
 SRX4370433
CTCF
Anterior temporal cortex
 SRX5532358
CTCF
BT142
 SRX6365883
TOP2B
KELLY
 SRX3124404
CTCFL
Anterior temporal cortex
 SRX5532364
CTCF
KELLY
 SRX3124403
CTCFL
KELLY
 SRX4155660
CTCFL
KELLY
 SRX3124415
CTCFL
KELLY
 SRX4155661
CTCFL
KELLY
 SRX3124416
CTCFL
Anterior temporal cortex
 SRX5532367
CTCF
Anterior temporal cortex
 SRX5532361
CTCF
BT142
 SRX6365882
TOP2B
U-87 MG
 SRX100417
REST
Prefrontal Cortex
 SRX5600893
OLIG2
SK-N-SH
 SRX186635
NRF1
NGP
 SRX8363487
SMARCA4
NGP
 SRX6483139
ARID2
Prefrontal Cortex
 SRX5600898
OLIG2
Fetal brain
 SRX209673
EP300
SK-N-SH
 SRX190219
EP300
SK-N-SH
 SRX186631
EP300
SK-N-SH
 SRX100540
EP300
T98G
 SRX018282
EP300
T98G
 SRX018279
EP300
T98G
 SRX018278
EP300
SF7761
 SRX707371
EZH2
Neural Stem Cells
 SRX707368
EZH2
ipNF05.5
 SRX5759194
SUZ12
ipNF05.5
 SRX5759193
SUZ12
ipNF05.5
 SRX5759192
SUZ12
ipNF05.5
 SRX5759191
SUZ12
ipNF05.5
 SRX5759190
SUZ12
ipNF05.5
 SRX5759189
SUZ12
T98G
 SRX3834113
EZH2
LAN-1
 SRX2011494
EZH2
KELLY
 SRX2011490
EZH2
Diffuse intrinsic pontine glioma
 SRX2009526
EZH2
Diffuse intrinsic pontine glioma
 SRX2009525
EZH2
Diffuse intrinsic pontine glioma
 SRX2009524
SUZ12
Diffuse intrinsic pontine glioma
 SRX2009523
SUZ12
SF8628
 SRX2009504
EZH2
SF8628
 SRX2009503
EZH2
SF8628
 SRX2009502
EZH2
SF8628
 SRX2009501
EZH2
SK-N-SH
 SRX190223
RXRA
NH-A
 SRX186728
EZH2
SK-N-SH
 SRX1035589
RARA
SK-N-SH
 SRX1035588
RARA
SK-N-SH
 SRX1035587
RARA
SK-N-SH
 SRX1035586
RARA
BE(2)-C
 SRX6764998
WDR5
BE(2)-C
 SRX6764997
WDR5
BE(2)-C
 SRX6764996
WDR5
SK-N-SH
 SRX190353
YY1
SK-N-SH
 SRX100543
YY1
SK-N-SH
 SRX190272
SIN3A
PFSK-1
 SRX190237
SIN3A
Neural Stem Cells
 SRX534845
CHD8
Neural Stem Cells
 SRX534844
CHD8
0777A
 SRX6433369
TOP2B
SNB-19
 SRX6433365
TOP2B
SNB-19
 SRX6433364
TOP2B
Glioma
 SRX6433362
TOP2B
Glioma
 SRX6433361
TOP2B
Glioma
 SRX6433359
TOP2B
Glioma
 SRX6433358
TOP2B
Glioma
 SRX6365881
TOP2B
Glioma
 SRX6365880
TOP2B
BE(2)-C
 SRX866614
GATA3
SH-SY5Y
 SRX866613
GATA3
KELLY
 SRX866612
GATA3
NGP
 SRX8363485
ARID1A
HRPEpiC
 SRX814234
LHX2
HRPEpiC
 SRX814231
OTX2
U-87 MG
 SRX7643943
HDAC2
Hippocampus
 SRX7627562
REST
Hippocampus
 SRX7627560
REST
Hippocampus
 SRX7627558
REST
SH-SY5Y
 SRX757048
SVIL
SH-SY5Y
 SRX757047
SVIL
SH-SY5Y
 SRX757046
KDM1A
SH-SY5Y
 SRX757045
KDM1A
OF4155
 SRX743524
FOXP1
90-8TL
 SRX736204
BRD4
90-8TL
 SRX736201
BRD4
SF268
 SRX716559
TEAD1
SF268
 SRX716558
TEAD1
SF268
 SRX716556
YAP1
SF268
 SRX716555
YAP1
KELLY
 SRX6977276
LIN28B
CHP-134
 SRX6977274
LIN28B
BE(2)-C
 SRX6977272
ZNF143
BE(2)-C
 SRX6977270
LIN28B
SK-N-SH
 SRX6935383
MYC
SK-N-AS
 SRX6935381
MYC
NB69
 SRX6935379
MYCN
NB69
 SRX6935378
MYC
NB-1643
 SRX6935376
MYCN
LA-N-5
 SRX6935374
MYCN
KELLY
 SRX6935372
MYC
COG-N-415
 SRX6935370
MYCN
HRPEpiC
 SRX668219
ZNF92
HRPEpiC
 SRX668217
E2F4
Neural Stem Cells
 SRX6602370
ARNTL
Neural Stem Cells
 SRX6602369
ARNTL
Neural Stem Cells
 SRX6602367
ARNTL
Neural Stem Cells
 SRX6602366
ARNTL
Glioma stem cells
 SRX6602364
ARNTL
Glioma stem cells
 SRX6602363
ARNTL
Glioma stem cells
 SRX6602361
ARNTL
Glioma stem cells
 SRX6602360
ARNTL
NGP
 SRX6483138
SMARCA4
NGP
 SRX6483137
SS18
NGP
 SRX6483133
ARID2
NGP
 SRX6483132
SMARCA4
NGP
 SRX6483131
SS18
NGP
 SRX6483127
ARID2
NGP
 SRX6483126
SMARCA4
NGP
 SRX6483125
SS18
Glioma
 SRX6433371
TOP2A
Glioma
 SRX6433370
TOP2A
CLB-Ga
 SRX6371955
BRD4
CLB-Ga
 SRX6371954
BRD4
Neural progenitor cells
 SRX5716470
SMARCA4
Neural progenitor cells
 SRX5716469
SMARCA4
Neural progenitor cells
 SRX5716468
SMARCA2
Neural progenitor cells
 SRX5716467
SMARCA2
Neural progenitor cells
 SRX5716464
SMARCA4
Neural progenitor cells
 SRX5716463
SMARCA4
Neural progenitor cells
 SRX5716456
SOX3
Neural progenitor cells
 SRX5716455
SOX3
Neural progenitor cells
 SRX5716454
SOX3
Neural progenitor cells
 SRX5716453
SOX2
Neural progenitor cells
 SRX5716452
SOX2
Neural progenitor cells
 SRX5716451
SOX2
CHP-134
 SRX5662029
JMJD6
CHP-134
 SRX5662028
JMJD6
CHP-134
 SRX5662027
JMJD6
CHP-134
 SRX5662026
MYCN
CHP-134
 SRX5662025
MYCN
CHP-134
 SRX5662024
MYCN
Prefrontal Cortex
 SRX5600906
THRA
Prefrontal Cortex
 SRX5600905
THRA
Prefrontal Cortex
 SRX5600904
THRA
Prefrontal Cortex
 SRX5600903
THRA
Prefrontal Cortex
 SRX5600902
THRA
Prefrontal Cortex
 SRX5600901
THRA
Prefrontal Cortex
 SRX5600900
THRA
Prefrontal Cortex
 SRX5600899
THRA
Prefrontal Cortex
 SRX5600897
OLIG2
Prefrontal Cortex
 SRX5600896
OLIG2
Prefrontal Cortex
 SRX5600895
OLIG2
Prefrontal Cortex
 SRX5600894
OLIG2
Prefrontal Cortex
 SRX5600892
OLIG2
Prefrontal Cortex
 SRX5600891
OLIG2
Prefrontal Cortex
 SRX5600890
OLIG2
Prefrontal Cortex
 SRX5600889
OLIG2
Prefrontal Cortex
 SRX5600888
OLIG2
Prefrontal Cortex
 SRX5600887
ATF4
Prefrontal Cortex
 SRX5600886
ATF4
Prefrontal Cortex
 SRX5600885
ATF4
Prefrontal Cortex
 SRX5600884
ATF4
Prefrontal Cortex
 SRX5600883
ATF4
Prefrontal Cortex
 SRX5600882
ATF4
Prefrontal Cortex
 SRX5600881
ATF4
Prefrontal Cortex
 SRX5600880
ATF4
Prefrontal Cortex
 SRX5600879
ATF4
Prefrontal Cortex
 SRX5600878
ATF4
Prefrontal Cortex
 SRX5600877
ATF4
Prefrontal Cortex
 SRX5600876
ATF4
LUHMES
 SRX5291888
MECP2
LUHMES
 SRX5291887
MECP2
LUHMES
 SRX5291886
MECP2
LUHMES
 SRX5291885
MECP2
LUHMES
 SRX5291880
MECP2
LUHMES
 SRX5291879
MECP2
LUHMES
 SRX5291878
MECP2
LUHMES
 SRX5291877
MECP2