ChIP-Atlas: Target genes

Potential target genes for CPSF3

Query protein: CPSF3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5441335 | HeLa
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
CPSF3's Target genes

◢ CPSF3: Average

◢ SRX8018228: 293

◢ SRX8018229: 293

◢ SRX8018230: 293

◢ SRX8018231: 293

◢ SRX5441330: HeLa

◢ SRX5441331: HeLa

◢ SRX5441334: HeLa

◣ SRX5441335: HeLa

◢ CPSF3: STRING

RABL2B
RABL2A
TSN
ZNF335
MAPKAPK5
DYNC1LI2
SRD5A1
NSUN2
NUP85
VDAC2
REXO1
CACTIN
POLR3F
DZANK1
PSMD12
ICE1
IPO13
OAZ3
RWDD1
NVL
CAPRIN1
NME6
HSPA9
NCLN
MRPS7
GGA3
POLR2E
GOSR2
SLC35B1
ZNF576
IRGQ
SUCLG1
FAM187A
EFTUD2
CCDC103
C19orf48
PSMG2
CEP76
LYRM4
FARS2
UBE2I
UPF2
DCTN1
MRPS5
MRPL11
ACTR10
VTI1B
COX7A2L
PSMD1
TAOK3
SUDS3
BLCAP
COMMD1
CCT4
EXOSC5
BCKDHA
VARS1
RBBP5
STAM
CDC73
SEC61B
SKP1
RABGGTB
SART3
ISCU
STAM2
PTGES2
TSNAX
HADHB
HADHA
USP1
PI4KB
PES1
ATP5MG
ZRANB2
SNAPC5
PDHX
APIP
TAF9
RAD17
AK6
RPL21
NDUFA4
EIF2S3
PAK1IP1
C6orf52
FARSB
PDAP1
BUD31
RPL17-C18orf32
RPL17
C18orf32
NUP205
SUMF2
PNO1
SUPV3L1
MRPL24
SELENOF
HS2ST1
B3GALT4
VPS52
RPS18
POLG2
AXDND1
VEZF1
ZC3H10
RPL41
TM9SF1
RPS27A
CLHC1
TMED1
GADD45GIP1
EIF4ENIF1
NFKBIL1
DDX39B
ATP6V1G2
PIN4
ATP5F1E
ANAPC7
GOLGA5
GCN1
SMC2
C6orf226
DPH6
RPS23
ATP6AP1L
APOM
BAG6
RPL35A
IQCG
MRTO4
EMC1
RXYLT1
EPN1
BICRA
MAMDC2
ANKLE2
EDC4
RIT1
TTC8
FAM131A
HSPA1B
COX20
SCRIB
RPS12
PHF23
DVL2
AMDHD2
SECISBP2
IER3
FLOT1
NRAS
PCBP1
FAM104A
C17orf80
KRBA2
RBKS
BABAM2
TBCK
AIMP1
H2BC4
H2AC6
H2AZ1
DNAJB14
OR6B2
NDUFA10
H4C14
AKAP8
UFM1
WDR90
TLCD1
NEK8
C19orf53
PAF1
MED29
TBK1
H4C12
ZNF383
MRPL38
MAZ
MPDU1
LOC100996842
CD68
TMPPE
GLB1
DAPK3
SF3B3
COG4
BAZ2A
H4C15
RRP36
MEA1
CNPY2
ADK
AP3M1
GRAMD2A
DGKZ
RNF166
CTU2
PROSER1
NHLRC3
LAMP1
DDIT4
TMEM132A
RPS29
LRR1
TIMM13
RPN1
PCBD2
XPNPEP3
ST13
DNAJB7
NANOS1
ROGDI
CUL7
ZNF34
RPL8
NAT10
GTF3C4
DDX31
H4C11
SEC31A
DENR
CDK12
NAPRT
H4C3
H1-6
GET4
DNAJC21
OSGEP
APEX1
SYNRG
RPS11
RPL13A
PRKAG1
GLRX2
INPP5E
ECI1
UPF3A
NOLC1
CCDC34
H1-2
DPH7
UBE2M
CHMP2A
MAD1L1
FBXO4
ALKBH5
PFDN5
MYG1
SIRT7
PKD1
SLC35E3
XRN1
AHRR
TUBB
WDR74
GORAB
ATAD3A
RHOT2
POLR2C
PHF1
ARHGAP11A-SCG5
ARHGAP11A
FDX2
CMTR1
VPS28
PRRT2
PAGR1
H3C15
H3C14
H2AC19
H2AC18
RPL7
RDH10
JUNB
TTC33
POLDIP3
SNAPC4
RPL22L1
POLR2J3
RPS2
NDUFB10
RNF151
RBM39
SPATC1L
GBA
C5orf24
STK36
RNF25
DHRS11
ATAT1
IMPDH2
ZCWPW1
MEPCE
EIF2D
MSH4
PNMA1
SRSF11
SYCE2
LRRC40
THOC5
RAD23A
FTH1
DNAJC9
MLX
COASY
STUB1
JMJD8
OAZ1
H2BC21
H2AC21
H2AC20
NDST2
CCDC138
RPS10-NUDT3
RPS10
SEC11C
CISD3
MAPK8IP3
NPM3
FGF8
UFSP1
ACHE
MATR3
ERCC6L2
RCC1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
DRAP1
C11orf68
SLC25A10
PRDX1
BTBD10
NDUFS3
KBTBD4
SCAMP3
MAP2K2
ZNF341
HAX1
SELENOH
SLC39A1
CRTC2
UBC
EXOSC6
SLC3A2
MCOLN1
TRAP1
ARFGAP2
TOPORS
SMIM27
VPS50
HEPACAM2
ZBED8
ZMIZ2
MAN2C1
ARHGAP4
NDUFS7
CHD2
NUDT16L1
TOM1
CUL9
NME3
MRPS34
EME2
CLUAP1
C16orf90
TXNRD2
COMT
DNLZ
PRKAA1
RABGAP1
CDH24
H2BC5
H1-4
DOHH
RNASEK
C17orf49
TRIM65
ZNF251
RBM4
DUS1L
MAML1
SRRT
USP21
FBF1
BAG2
ASXL1
COX18
KLHL11
RPS19
MOV10
TUSC2
STYXL1
MDH2
NOP2
OSTC
GTF2H2
SPCS1
GLT8D1
GPAA1
EXOSC4
ARF3
TCF3
GTF2A2
TNKS1BP1
RCOR3
PYGO2
LOC101928120
TMEM230
TUBA1B
RHOF
ZNF76
PUF60
DERA
H2BC12
H2AC12
MDP1
CHMP4A
H3C13
H2BC18
EIF4H
ZBTB4
SLC35G6
POLR2A
MRPL40
HIRA
MAPKBP1
RPL27
HMCES
PPP4R3B
COX19
PMF1-BGLAP
PMF1
TMEM79
SMG5
DRG2
HSD3B7
MMP24OS
MMP24-AS1-EDEM2
RICTOR
BNIP3
ACTN4
FZR1
RCE1
EHMT1
METTL9
CDK16
DPY19L4
FBXW9
TUBGCP6
WDR97
MAF1
DENND4B
RUVBL1
EEFSEC
FUT11
CCDC88A
MBD3
NOXO1
GFER
LMAN2
SLC50A1
DPM3
ABCF3
PACS1
SLC39A13
TRIP13
BRD9
RPS15A
ROPN1L
PHLDA1
RARS1
PDCD6
H3C12
H2BC17
H2AC17
CHD8
MXRA7
TMSB4X
CXorf38
ANKFY1
SELENOO
DHPS
VPS4A
PROZ
LRRC37A3
EGLN2
MFSD14A
DIAPH1
ENOSF1
RRAS2
JAG2
WDR24
ADAT1
MED26
GGA2
LRRC24
C8orf82
B4GALT7
TXLNA
GDI1
C7orf25
MTF2
PPFIA4
STYX
SURF6
RPL37
PITPNM2
MTRNR2L1
ECHS1
GAPDH
RAB5B
FAM174C
NECAB3
WDR73
NMB
RILP
IMPA1
ALDOC
PSMD5
GPS2
DUX4
H4C2
H3C2
H4C1
TMEM267
PWP2
LOC102724159
USP3
AURKAIP1
PIM2
SRRM3
ID1
RHOB
TIGD3
C5orf15
SETD6
FAM189B
TMEM101
IFI30
TRIM52
B3GAT3
H2AC4
BCAP29
ZBTB45
GAA
ADPRHL1
HOXA3
HOXA5
HOXA6
H4C8
MKRN2OS
MKRN2
ZNHIT2
NT5C
MRPL49
FAU
RAB26
SNAP47
TMEM150A
JMJD4
SLC39A7
RXRB
HSD17B8
H4-16
H2AJ
RING1
SLC26A11
CS
H2BC11
H2AC11
SLC39A4
CPSF1
SMN2
SMN1
CENPBD1
C12orf73
H3-3A
PCBP2
CYB561D1
TSR3
GNPTG
CD79A
TUBGCP5
NPAS4
JRK
ZNF276
VPS9D1
AGO3
NCBP3
COPRS
TMEM43
CHCHD4
MLLT1
ZNF131
TOR3A
VCP
ZSWIM8
CHCHD1
IFITM1
IFITM2
PNKP
RECQL4
LRRC14
CYC1
CIAO3
FAM222B
COA3
CNTD1
H4C9
TAF10
ARSG
TOMM20
PPP1R37
SPHK2
RPL18
FAM83E
EFNA4
WDR83OS
WDR83
MAN2B1
TELO2
PTX4
ID3
TEDC2
TEKT2
ADPRS
IFI35
VWA7
ATXN2
CTNNAL1
CYTH1
H2BC7
H3C4
H2AC7
NOL7
SLC39A3
RUFY2
SLC24A1
INKA2
DDX20
MIF4GD
NFYB
COPB1
STRIP1
GPANK1
C6orf47
CYBA
PAM16
WDR11
NUDT15
ATAD2
C7orf26
C17orf75
UBA2
TSFM
PDCD2L
TATDN3
NSL1
MIEN1
BAX
LRRC8D
PSMC3IP
CCDC78
RPL12
BUD13
ANTKMT
LRSAM1
NSFL1C
FBXL20
NDUFA4L2
MTARC1
TSC1
GFI1B
INPP5K
SPOUT1
PEX12
SNRPE
RSAD1
TCF25
PDE4DIP
CDK11B
CDK11A
STPG3
NELFB
MRPL12
ERCC5
NFAT5
SLC12A6
RGL2
MBTPS1
UBA52
NOP10
PIP4K2B
ZNF35
TAF9B
UCKL1
ELL
TBCD
TMCO1
PPP1R15B
ITGB3BP
EFCAB7
CCDC97
CHUK
ARL6IP1
MRPS28
ABCA7
CHD5
CLK3
H4C5
BICD2
ZNF451
MPG
KMT5B
FAM228B
SF3B6
GAS2L1
TUT1
STX16
DHRS13
C16orf46
LENG9
TCHP
ZBTB22
TAPBP
DAXX
ARMC7
BRWD1
MTHFS
SAMD1
WDR27
C6orf120
SFXN4
ANKRD40
KAT5
C16orf71
ANKS3
SF3A3
TMEM107
TIPIN
ATP7A
PTCD1
CPSF4
PSMG1
ANKRD12
SSBP1
VMAC
NDUFA11
PLK1
TEX38
ATPAF1
UBE2Z
SP2
PCYT2
C8orf33
TAOK2
CNP
WASHC2C
ADI1
KIFBP
ZNF346
TAF2
MTREX
DHX29
PTPN6
C12orf57
TRIM41
OTULIN
AXL
CCDC24
SKA3
MRPL57
UHRF2
PRKRIP1
PRSS27
MRPL58
CLN6
HASPIN
NR1H3
ACP2
IDI1
NKIRAS1
TMEM222
RPL15
LSG1
IARS1
FRG2C
NUF2
SLC25A17
TMSB10
DYRK1B
CSRNP2
CLPTM1L
GTSE1
DPP9
SENP1
PFKM
CDK5R1
FECH
ABTB1
ULK3
TMEM223
TMEM179B
IREB2
POLD1
ZZZ3
QRICH1
SCAMP5
GTF2H2C
GTF2H2C_2
ARHGEF35
TRMT2A
RANBP1
AGL
CEP72
CCDC43
EXOC3
DNAJA3
SLC25A42
DCAF10
DDX56
STAT3
SEC62
TAF1D
C11orf54
MTRNR2L8
POM121C
SRA1
CHMP6
H3C8
H2BC10
PBLD
HNRNPH3
IDH3B
H3C1
H1-1
GTF2IRD2B
GTF2IRD2
ROMO1
MRI1
USP30
PPP4C
CD320
LRP6
MRPS23
MUC3A
ZDHHC8
THEM4
KRT8
TMEM139
CASP2
PHKG2
CCNT1
PAFAH2
LOC100287896
LIPT2
ANAPC4
CCDC169-SOHLH2
CCDC169
RNF40
CCDC189
MARCHF7
AMACR
ZNF296
GEMIN7
FAM89B
EHBP1L1
PRKACA
INTS5
SSH3
NOC4L
DDX51
KMT2D
PPARA
RNF187
MRPL44
MRPL55
TBL1X
PGM1
FIS1
TBC1D13
KDM3B
RFX1
GMPPB
AMIGO3
ACTR8
MSTO1
FBXO31
MAP1LC3B
NOL11
NAXE
NXF1
DCXR
CLCN7
AHCY
ZC3H6
C6orf136
OGFOD3
HEXD
STXBP4
COX11
TSPAN10
NPLOC4
GPX1
GPN2
FRA10AC1
WDR70
NIPBL
TIGD6
HMGXB3
DMAP1
COQ7
KIAA2026
WDR47
MAPK1IP1L
YAP1
RASA4B
FAM207A
SMIM13
IL11RA
ELK1
CYB561
SUOX
SF3B4
DSTYK
SMARCD1
EEF2KMT
TTLL3
RFC4
MBD1
ST3GAL3
SCAP
SPSB2
RMND5B
TPI1
RPS15
TRIP4
METTL2B
UBB
LUC7L2
RRP8
ILK
FAM219B
EIF4A1
GSTO2
TOB2
IFITM3
SDHA
CCDC127
CHST14
MATN1
TYMP
SCO2
SCFD1
TRIM37
ZNF513
IPO9
USP34
SLC35A3
NR4A1
MTERF4
MST1
NDUFA6
NDUFS6
MRPL36
LSM14A
MTIF2
SPAG5
RIPK1
MRTFB
ZNF668
ZNF646
ISG20
TVP23B
H2BC8
H2AC8
MADD
GRB2
SPRTN
EXOC8
WDR6
ZNF414
JPT2
ELK4
ARPC3
STX5
PDPK1
DIDO1
TSC22D1
KANK2
COMMD2
EHD1
TFPT
PRPF31
KIF11
ADNP
RABIF