ChIP-Atlas: Target genes

Potential target genes for CPSF3

Query protein: CPSF3
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX5441335 | HeLa
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
CPSF3's Target genes

◢ CPSF3: Average

◢ SRX8018228: 293

◢ SRX8018229: 293

◢ SRX8018230: 293

◢ SRX8018231: 293

◢ SRX5441330: HeLa

◢ SRX5441331: HeLa

◢ SRX5441334: HeLa

◣ SRX5441335: HeLa

◢ CPSF3: STRING

RABL2B
RABL2A
TSN
ZNF335
MAPKAPK5
DYNC1LI2
SRD5A1
NSUN2
NUP85
VDAC2
REXO1
CACTIN
POLR3F
DZANK1
PSMD12
ICE1
IPO13
OAZ3
RWDD1
NVL
CAPRIN1
NME6
HSPA9
S1PR4
NCLN
MRPS7
MIF4GD
GGA3
POLR2E
GPX4
GOSR2
SLC35B1
ZNF576
IRGQ
SUCLG1
FAM187A
EFTUD2
CCDC103
C19orf48
PSMG2
CEP76
LYRM4
FARS2
UBE2I
UPF2
DCTN1
MRPS5
MRPL11
ACTR10
VTI1B
COX7A2L
PSMD1
TAOK3
SUDS3
NNAT
BLCAP
COMMD1
CCT4
EXOSC5
BCKDHA
VARS1
RBBP5
STAM
CDC73
SEC61B
SKP1
RABGGTB
SART3
ISCU
STAM2
PTGES2
TSNAX
HADHB
HADHA
USP1
PI4KB
PES1
ATP5MG
ZRANB2
ZWILCH
SNAPC5
RPL4
PDHX
APIP
TAF9
RAD17
AK6
RPL21
NDUFA4
EIF2S3
PAK1IP1
C6orf52
FARSB
PDAP1
BUD31
RPL17-C18orf32
RPL17
C18orf32
NUP205
SUMF2
PNO1
SUPV3L1
HDGF
MRPL24
SELENOF
HS2ST1
VPS52
RPS18
B3GALT4
POLG2
DDX5
CEP95
AXDND1
VEZF1
ZC3H10
RPL41
ESYT1
HSPA1B
TM9SF1
IPO4
TSSK4
RPS27A
CLHC1
TMED1
GADD45GIP1
SFI1
EIF4ENIF1
NFKBIL1
DDX39B
ATP6V1G2
PIN4
ATP5F1E
ANAPC7
GOLGA5
RPLP0
GCN1
SMC2
C6orf226
DPH6
NFE2
HNRNPA1
CBX5
RPS23
ATP6AP1L
C6orf47
BAG6
APOM
RPL35A
LMLN
IQCG
MRTO4
EMC1
MYC
RXYLT1
EPN1
BICRA
MAMDC2
ANKLE2
EDC4
RIT1
TTC8
FAM131A
COX20
SCRIB
RPS12
PHF23
GABARAP
DVL2
ATP6V0C
AMDHD2
SECISBP2
CKS2
IER3
FLOT1
NRAS
PCBP1
FAM104A
C17orf80
RPL26
KRBA2
RBKS
BABAM2
TBCK
AIMP1
H2BC4
H2AC6
H2AZ1
DNAJB14
OR6B2
NDUFA10
H4C14
H3C15
H3C14
H2AC19
H2AC18
AKAP8
EIF4A2
UFM1
WDR90
MCRIP2
TLCD1
RPL23A
RAB34
NEK8
MRI1
C19orf53
PAF1
MED29
TBK1
H4C12
H4C11
H2BC15
H2AC15
ZNF585B
ZNF383
TRIM65
MRPL38
PRRT2
MAZ
MPDU1
LOC100996842
EIF4A1
CD68
SOX15
TMPPE
GLB1
DAPK3
SF3B3
COG4
BAZ2A
ATP5F1B
H4C15
RRP36
MEA1
CNPY2
ADK
AP3M1
GRAMD2A
DGKZ
RNF166
CTU2
PROSER1
NHLRC3
DUX4
ZBTB37
LAMP1
DDIT4
TMEM132A
TMEM109
RPS29
LRR1
TIMM13
RPN1
PCBD2
XPNPEP3
ST13
DNAJB7
TM4SF1
NANOS1
SMIM22
ROGDI
MRPL2
KLC4
CUL7
ZNF34
RPL8
NAT10
GTF3C4
DDX31
H2BC14
H2AC14
THAP9
SEC31A
DENR
MED1
CDK12
EEF1A1
NAPRT
MROH6
H4C3
H1-6
GET4
PIP4P1
OSGEP
APEX1
DNAJC21
SYNRG
RPS11
RPL13A
PRKAG1
GLRX2
INPP5E
ECI1
UPF3A
NOLC1
CCDC34
H3C3
H1-2
DPH7
UBE2M
CHMP2A
NUDT1
MRM2
MAD1L1
FBXO4
ALKBH5
PFDN5
MYG1
SIRT7
PCYT2
MAFG
PKD1
SLC35E3
XRN1
AHRR
TUBB
MDC1
WDR74
STX5
GORAB
ATAD3A
RHBDL1
RHOT2
POLR2C
SYNGAP1
PHF1
CUTA
ARHGAP11A-SCG5
ARHGAP11A
ZGLP1
FDX2
CMTR1
VPS28
PAGR1
MVP
RPL7
RDH10
PRDX2
JUNB
TTC33
POLDIP3
SNAPC4
RPL22L1
POLR2J3
RPS2
RPL3L
RNF151
NDUFB10
RBM39
SPATC1L
GBA
C5orf24
STK36
RNF25
MRM1
DHRS11
PPP1R10
MRPS18B
ATAT1
NDUFAF3
DALRD3
IMPDH2
RPL37
ZCWPW1
PPP1R35
MEPCE
EIF2D
MSH4
PNMA1
SRSF11
SYCE2
LRRC40
THOC5
RAD23A
CALR
FTH1
BEST1
MRPS16
DNAJC9
COASY
MLX
WDR24
STUB1
JMJD8
PEAK3
OAZ1
ARL4D
H2BC21
H2AC21
H2AC20
NDST2
CCDC138
RPS10-NUDT3
RPS10
SEC11C
CISD3
MAPK8IP3
NPM3
FGF8
UFSP1
ACHE
MATR3
ERCC6L2
RCC1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
DRAP1
C11orf68
SLC25A10
MRPL12
PRDX1
BTBD10
NDUFS3
KBTBD4
FAM180B
SCAMP3
FAM189B
MAP2K2
ZNF341
HAX1
SELENOH
BTBD18
RPL27A
SLC39A1
CRTC2
CREB3L4
UBC
EXOSC6
SLC3A2
PTMA
ZNF358
MCOLN1
NRIP1
MAT2A
TRAP1
PACSIN3
ARFGAP2
ABHD17A
TOPORS
SMIM27
VPS50
HEPACAM2
ZBED8
ZMIZ2
MAN2C1
NAA10
ARHGAP4
NDUFS7
CHD2
NUDT16L1
TOM1
SRF
CUL9
RPL3
MRPS34
EME2
NME3
CLUAP1
C16orf90
TXNRD2
COMT
GPSM1
DNLZ
CARD9
PRKAA1
ZBTB26
RABGAP1
PGP
CASKIN1
BRICD5
CDH24
H2BC5
H1-4
FZR1
DOHH
RNASEK
C17orf49
BCL6B
ZNF251
RBM4
DUS1L
MAML1
TRIP6
SRRT
USP21
UFC1
PPOX
FBF1
BAG2
ASXL1
COX18
KLHL11
RPS19
MOV10
TUSC2
RASSF1
HYAL2
STYXL1
MDH2
NOP2
OSTC
GTF2H2
SPCS1
GLT8D1
GPAA1
EXOSC4
ARF3
TCF3
GTF2A2
TNKS1BP1
RCOR3
FLYWCH1
SHC1
PYGO2
PBXIP1
LOC101928120
TMEM230
PCNA
TUBA1B
SETD1B
RHOF
ZNF76
PUF60
DERA
SGK1
H4C9
H2BC12
H2AC12
MDP1
CHMP4A
H3C13
H2BC18
EIF4H
ZBTB4
SLC35G6
POLR2A
MRPL40
HIRA
MAPKBP1
RPL27
IFI35
HMCES
PPP4R3B
CYP2W1
COX19
PMF1-BGLAP
PMF1
TMEM79
SMG5
DRG2
HSD3B7
MMP24OS
MMP24-AS1-EDEM2
EIF6
RICTOR
BNIP3
ACTN4
RCE1
EHMT1
METTL9
CDK16
DPY19L4
TUBGCP6
HDAC10
GNG14
MAF1
CYC1
FBXW9
WDR97
DENND4B
RUVBL1
EEFSEC
FUT11
CHCHD1
CCDC88A
MBD3
NOXO1
SYNGR3
GFER
SLC50A1
EFNA1
RGS14
LMAN2
DPM3
ABCF3
PACS1
SLC39A13
TRIP13
BRD9
RPS15A
ROPN1L
PHLDA1
RARS1
PDCD6
H3C12
H2BC17
H2AC17
CHD8
MXRA7
TMSB4X
CXorf38
TRABD
ANKFY1
SELENOO
DHPS
VPS4A
PROZ
LRRC37A3
EGLN2
MFSD14A
DIAPH1
ENOSF1
RRAS2
JAG2
ADAT1
MED26
GGA2
LRRC24
C8orf82
PHF2
TMED9
B4GALT7
TXLNA
GDI1
FAM50A
ATP6AP1
C7orf25
MTF2
PPFIA4
STYX
SURF6
CARD6
PITPNM2
MTRNR2L1
PAOX
ECHS1
GAPDH
RAB5B
PMEL
CDK2
CIRBP
FAM174C
EFNA2
NECAB3
ACTL10
PTPN6
C12orf57
ATN1
WDR73
NMB
RILP
SLC10A5
IMPA1
PIGS
ALDOC
PSMD5
MRPL55
GPS2
EIF5A
H4C2
H3C2
H2AC4
H4C1
FADD
H3C1
H1-1
TMEM267
PWP2
LOC102724159
USP3
AURKAIP1
SLC35A2
PIM2
SRRM3
ID1
RHOB
TIGD3
C5orf15
SETD6
TMEM101
IFI30
TRIM52
ROM1
EML3
B3GAT3
BCAP29
ZBTB45
SLC27A5
GAA
ADPRHL1
HOXA3
HOXA6
HOXA5
H4C8
MKRN2OS
MKRN2
ZNHIT2
TM7SF2
MRPL49
FAU
NT5C
TRAF7
RAB26
SNAP47
JMJD4
USP39
TMEM150A
RNF181
C2orf68
SLC39A7
RXRB
RING1
HSD17B8
H4-16
H2AJ
SLC26A11
CS
H2BC11
H2AC11
SLC39A4
CPSF1
SMN2
SMN1
TDG
C12orf73
CENPBD1
H3-3A
CYB561D1
ATXN7L2
PCBP2
CD79A
ARHGEF1
TSR3
GNPTG
TUBGCP5
NPAS4
GFAP
JRK
ZNF276
VPS9D1
AGO3
NCBP3
COPRS
TMEM43
CHCHD4
MLLT1
EAPP
ZNF131
TOR3A
SLC5A5
RPL18A
VCP
FANCG
ZSWIM8
IFITM3
IFITM1
IFITM2
TBC1D17
PNKP
AKT1S1
RECQL4
LRRC14
MFSD3
CIAO3
FAM222B
SLC27A3
COA3
CNTD1
TAF10
RRP8
ILK
TPP1
ARSG
TOMM20
PPP1R37
SPHK2
SPACA4
RPL18
FAM83E
ZNF205
ZSCAN10
EFNA4
WDR83OS
WDR83
MAN2B1
TELO2
PTX4
ID3
TEDC2
TEKT2
ADPRS
VWA7
ATXN2
CTNNAL1
CYTH1
H4C5
H3C4
H2BC7
H2AC7
H4C4
NOL7
SLC39A3
RUFY2
SLC24A1
INKA2
DDX20
NFYB
COPB1
STRIP1
TOB1
GPANK1
CSNK2B
CYBA
PAM16
WDR11
NUDT15
ATAD2
C7orf26
ZNF207
C17orf75
UBA2
TSFM
PDCD2L
TATDN3
NSL1
VIM
MIEN1
GRB7
BAX
LRRC8D
PSMC3IP
HAGHL
CCDC78
ANTKMT
METRN
RPL12
LRSAM1
BUD13
NSFL1C
FBXL20
NDUFA4L2
STAC3
MTARC1
TSC1
GFI1B
RPL19
CACNB1
INPP5K
SPOUT1
PEX12
AP2B1
SNRPE
RSAD1
CHAD
TCF25
PDE4DIP
CDK11B
CDK11A
STPG3
NELFB
FAM166A
ERCC5
NFAT5
SLC12A6
NUTM1
NOP10
WDR46
RGL2
PFDN6
MBTPS1
UBA52
PIP4K2B
ZNF35
STX10
IER2
TAF9B
UCKL1
ELL
TBCD
TMCO1
PPP1R15B
ITGB3BP
EFCAB7
CCDC97
CHUK
ARL6IP1
MRPS28
ABCA7
CHD5
CLK3
BICD2
ZNF451
RHBDF1
MPG
KMT5B
FAM228B
TP53I3
SF3B6
GAS2L1
MTA2
TUT1
STX16
FLOT2
DHRS13
C16orf46
LENG9
CDC42EP5
TCHP
ZBTB22
TAPBP
DAXX
ARMC7
BRWD1
MTHFS
SAMD1
C19orf67
WDR27
C6orf120
SFXN4
ANKRD40
RNASEH2C
KAT5
C16orf71
ANKS3
SF3A3
TMEM107
TIPIN
ATP7A
PTCD1
CPSF4
PSMG1
ANKRD12
SSBP1
VMAC
NDUFA11
PLK1
TEX38
ATPAF1
BHLHE40
UBE2Z
SP2
NPB
C8orf33
TAOK2
CNP
WASHC2C
ADI1
KIFBP
ZNF346
TAF2
MTREX
DHX29
TRIM41
OTULIN
AXL
CCDC24
SKA3
MRPL57
UHRF2
PRKRIP1
PRSS27
MRPL58
CLN6
HASPIN
NR1H3
ACP2
WDR37
IDI1
NKIRAS1
TMEM222
RPL15
LSG1
IARS1
FRG2C
NUF2
SLC25A17
TMSB10
DYRK1B
FOXD3
CSRNP2
CLPTM1L
GTSE1
DPP9
SENP1
PFKM
CDK5R1
FECH
RPS5
ABTB1
ULK3
TMEM223
TMEM179B
IREB2
POLD1
NR1H2
ZZZ3
QRICH1
SCAMP5
GTF2H2C