ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX367330 | 293
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◣ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ CDK9: STRING

WDR74
NGB
MTRNR2L1
FAM234B
H4C14
H4C15
RS1
PPEF1
LUC7L2
FMC1-LUC7L2
FMC1
MTRNR2L2
MSH3
DHFR
HNRNPU
H3C15
H3C14
H2AC19
H2AC18
HNRNPH1
PIK3R3
C1orf198
SOD2
WTAP
MTRNR2L8
TARS3
CEBPG
COQ8A
RNF151
RPS2
GEMIN8
ZNF839
EIF4A1
NUP214
SRSF2
MFSD11
POLE4
ZWILCH
RPL4
HSPA8
FARSA
CALR
MAGEB10
CDC25C
FAM53C
H1-10
MAT2A
LTA4H
CKB
C15orf39
H2AZ1
DNAJB14
TM2D3
ATP1B3
ZC3H10
RPL41
RPL3
EIF1
DUX4
HNRNPA2B1
CBX3
COX5A
CNOT11
WASHC4
FUS
HNRNPAB
POLDIP3
POLR2M
NGRN
MKNK2
EIF3A
SREBF1
FBXL3
IDH2
CCDC200
SRRM2
H4C1
H3C1
H1-1
ASCC1
ANAPC16
H4C3
H1-6
AKAP13
CIRBP
MYBL2
KCTD12
DESI2
JUN
POLG
TMEM107
WAC
UGCG
SRSF7
EFNB2
ZBTB45
TRIM28
RPL37A
MSANTD2
BTG3
RPS8
GLIPR1L2
PABPC4
EIF4G2
CYCS
RBMX
EIF1AX
SERF1B
SERF1A
MSX1
TYW1
SBDS
NRARP
H2BC11
H2AC11
RRNAD1
ISG20L2
RCC1
SIRT4
KLHL11
ADAMTS1
NASP
HSPA1B
U2AF1L5
U2AF1
MEAF6
HSPA1L
HSPA1A
MED11
ADSS2
GOLGA8A
METTL26
GTF2H2C_2
GTF2H2C
LRRC37A3
ZNF326
MCRIP2
KLF6
HSP90AA1
C4orf36
UBE2G2
LIN9
URGCP
UBE2D4
CZIB
HMGN2
PRMT5
SH3YL1
ACP1
COL23A1
CHAMP1
ENOSF1
PKD1
PI4K2B
DYNLL2
SFPQ
RPL22L1
LARP1B
GTF2H5
ULBP1
FBXO28
PPIA
BRD3
GPR89A
POLR2J3
ZBTB4
SLC35G6
POLR2A
BTF3
KCTD13
ID4
GSTA4
CHRNA5
TGOLN2
ALOXE3
HES7
UNC45A
HDDC3
ANKRD13C
RNF126
MAP3K3
SEPHS2
TXLNG
TSPAN3
NSF
CHST10
TTLL12
TNPO1
B3GALT1
C19orf48
ICMT
SESN2
RBM26
RHOB
TAF9
RAD17
AK6
CDC7
RPL5
H3-3B
CHEK1
MFSD14A
WDHD1
SOCS4
PCIF1
IFRD2
CDCA3
SCNM1
LYSMD1
TMEM115
CALR3
C19orf44
PHB
TCEA2
SMPD3
CLPB
BOD1
MMACHC
MRPL24
FEM1A
PNKD
AAMP
GSPT1
PAFAH2
ST3GAL2
CHMP4B
NUDCD1
SLC39A1
TSNAXIP1
RANBP10
BTRC
CRTC2
TMTC3
CEP290
PPRC1
AP2S1
KBTBD6
FRG2C
PANK4
HES5
PEMT
AHCYL2
KBTBD7
PRCC
MICOS13
HSD11B1L
DDX23
PPP1R12C
C1orf159
UNK
LARS1
CTU1
INVS
ERP44
PPP1R12B
ZFYVE1
PHF12
VCPIP1
C8orf44-SGK3
ZNF225
NTAN1
TSSC4
MAD2L1BP
GTPBP2
GTF2H4
BANP
SYMPK
FOXA3
ZNF444
TMEM11
ORMDL3
NPRL2
CYB561D2
SLC35B4
SCAF1
RRAS
TNFAIP1
IFT20
FASTKD1
GFUS
UBQLN4
LAMTOR2
DSTYK
SNX17
EIF2B4
RPIA
STAU1
WDPCP
MDH1
SLC4A2
CDK5
ING3
TTC33
TTC13
ARV1
STK25
ABCF2-H2BE1
ABCF2
CCDC146
SUFU
ACTR1A
SCRIB
INTS9
HMBOX1
ZSCAN22
GDE1
CCP110
TLE3
TIMM21
FBXO15
GATB
C16orf91
ZNF749
CHPF2
WNK1
COX7C
EMILIN1
MED15
BOLA1
JOSD2
ASPDH
NOP14
GRK4
SSBP1
ZNF337
UBR2
CLEC16A
DEXI
ZFYVE19
DNAJC17
AP2M1
ODF3L2
TMEM127
CIAO1
TFEB
WDR97
MAF1
TMEM59
TCEANC2
WDR87
SIPA1L3
ZNF56
C19orf53
ZFYVE28
TSC2
NTHL1
TOR1AIP2
TOR1AIP1
SIRT2
NFKBIB
PEX14
DFFA
UBAC1
PHF13
TRAPPC3
RPS7
CFAP99
SMARCAL1
VPS50
HEPACAM2
BUB1B
NUF2
FBXW11
KMT2B
TMEM70
ELOC
RIC8B
CBARP
ATP5F1D
DCAKD
RPL8
FBXO46
TBL3
NMT1
ZNF189
MRPL50
TFPT
PRPF31
SESN1
AURKAIP1
LRRC29
ING4
DYNC1I2
ZNF34
CTF1
BCL7C
RPGRIP1L
FTO
IPPK
CCDC90B
MEIOSIN
BUB3
PSMD11
RPS20
EMP3
SEPTIN9
RAB5C
ZNF235
SOX6
C11orf58
NDUFS2
ADAMTS4
USP48
ATP5PO
CAPN15
TMEM160
THRAP3
RANGAP1
THYN1
ACAD8
DCP1A
SLC25A19
RAB1A
LETM1
FBXL19
ZNF169
CNIH4
ZNF420
PRRG2
NOSIP
TRAF7
PEX26
OSCAR
NDUFA3
TMEM101
CCAR2
C8orf58
FBXO48
APLF
PDE6D
COPS7B
NUDT13
VIPAS39
AHSA1
TRAK2
STRADB
CCDC150
ZNF224
B3GALNT2
RBL1
ARHGAP9
CHCHD3
RALBP1
MARS1
GPANK1
CSNK2B
CLP1
TTBK1
SNX27
MED23
NOTCH2NLC
ZC3H11A
ZBED6
ZNF554
DDX49
COPE
ZNF354A
PTDSS2
NOTCH2NLB
NOTCH2NLA
RABAC1
ZNF350
NME1
KAT7
TMEM102
FGF11
MYLK4
LY6G5B
STK17A
WBP1
INO80B
FAM193A
BIRC5
CLDND1
RPL18A
FAM185A
LMNB2
PANK3
CTDP1
ZNF384
RBM6
GPKOW
PA2G4
SMUG1
NFXL1
TMEM43
CHCHD4
UFSP2
C4orf47
CDK5RAP2
YPEL3
TBX6
UTP11
SERPINI1
PDCD10
ZNF230
UBE2Q1
HTRA2
DQX1
FAM222A
WRNIP1
CCDC174
UCHL5
RO60
ZW10
SF3A3
ZNF37A
NUP153
PNPLA6
CNOT4
AKIRIN2
TMEM245
GPAA1
EXOSC4
FAM228B
FRG2
ZNF133
CNOT1
RPS6KB2
MAMDC2
RPS19
BICD2
ZNF718
HBP1
RPS3
UBL7
ZNF527
DUS3L
ZNF227
SLMAP
SDCCAG8
CEP170
ZCCHC4
ZNF595
PHF23
GABARAP
WBP2
SLC33A1
C19orf67
POLR2E
ZNF226
C6orf47
NDUFS7
FDPS
SNX1
CIAO2A
LAMP1
SPHK2
RPL18
NKIRAS1
FAM83E
HSPA13
SYPL1
PIGU
NFKBIL1
ATP6V1G2
SNRPE
PSENEN
LIN37
RPS13
MXI1
RALGAPA2
RPS26
PGBD4
EMC7
SEC61A1
DVL2
COMMD9
TIMM13
ZNF2
LUC7L
ZGPAT
ARFRP1
PCM1
PHB2
SCAMP4
ADAT3
SF3B6
CDCA8
C1orf109
NCLN
CFAP410
QTRT2
CCDC191
TMEM143
SYNGR4
INTS1
PTBP1
LRFN3
DGAT1
GUSB
RPP40
ZNF32
ZNF547
TRAPPC2B
MTMR9
SPATC1L
TPGS1
ENOX2
RPL15
TXNDC9
EIF5B
ZNF419
WDR53
FBXO45
NDUFS3
KBTBD4
AHCTF1
CIC
SEC11C
MED27
TNFRSF12A
THOC6
HCFC1R1
RPL29
GALK2
CAND1
ZNF500
TTC1
SLC17A7
ZCCHC8
GSK3A
ZNF484
PSMD4
PES1
RAB29
SLX1B
SLX1A
BOLA2B
HEXIM2
ASXL1
CWC22
EIF2D
DNM1L
TMEM69
GPBP1L1
BOLA2
CDK8
TERF2
ZNF343
WAPL
RPL23A
RAB34
TMEM186
PMM2
AQR
RPL37
OPA1
PRR14
TSACC
CCT3
GINS3
ZNF451
FAM207A
USP35
KCTD21
PSMD2
MRPL20
ZBTB7A
RAB30
IGSF8
UBE2J2
CWC25
NOLC1
MGRN1
CCNL1
MAX
RCAN1
CAPG
NCBP2AS2
NCBP2
PSMC4
DDX47
COPS7A
EIF1B
ZMAT5
UQCR10
GID4
ATPAF2
BOLA2-SMG1P6
UBA52
PSMF1
ALG10B
VAPA
LSG1
ILF3
SSR3
ZMYND10
METTL3
SSR2
BOD1L1
ZNF747
KANSL1
ZSCAN32
ZNF174
EML6
PEX12
RPS27
RAB13
TRIP4
MUS81
CFL1
SLC38A9
RBBP5
SCAMP3
RPS3A
TRIP10
GPR108
KCTD5
THAP1
TMEM222
WASF1
CDC40
LEMD2
L3MBTL2
USP31
COPS2
KBTBD8
PARL
RPL27
ZNF805
PRKCI
HIRIP3
ZNF17
EXOC4
UTP3
PPP6C
MEN1
GPR137
CLPP
FHIT
ZNF862
ZNF773
MTR
SUPT4H1
VPS4B
SUGP1
MAU2
SELENOH
GFM1
ZSWIM9
LIG1
TSN
C12orf43
RNASEH2C
ZNF25
NCDN
KIAA0319L
CCND3
RETSAT
ELMOD3
TOR2A
ZNF586
THAP11
NUTF2
CENPT
SASS6
CARS1
ZNF567
RRP15
NDUFB5
MRPL47
RACGAP1
ZNF140
CSRNP2
PPP1R13L
POLR1G
DPP9
FBH1
ANKRD16
PRKCSH
CCDC151
PSMB4
ESCO2
CCDC25
B4GALT7
TOR1A
ABRAXAS2
RPL22
SKP2
LMBRD2
ARMH3
ZNF277
DOCK4
PSMD3
EIF3C
TMEM199
POLDIP2
ZNF584
CA11
VKORC1
ATP5MF-PTCD1
ATP5MF
EIF3D
SMN2
SMN1
SLC50A1
POLRMT
DPM3
GPT2
EIF3CL
YJU2
ALG10
AKAP8
SERP1
EIF2A
TMEM33
STMN3
RTEL1
N4BP2L2
TRMT1L
SWT1
XPOT
MRPS23
ARHGEF1
ZNF684
DHX8
DEDD
CCDC124
MEA1
TSNAX
ZNF45
VEZT
FGD6
EIF2S2
TUT1
SNAPC3
JRK
CIAO3
KATNB1
CNOT6
TMED9
VRK1
STX18
CXXC1
IPO7
COPS8
ZNF436
RAB3C
ATP6V0B
TMEM41A
ATP13A1
ZNF165
PSMB6
ZNF628
AP2B1
SKIV2L
SF3B2
NELFE
GAL3ST3
CAPN10
INTS4
NUP205
MRPS18C
HELQ
INTS12
GSTCD
NOP53
ZNF548
MRPS16
ZNF764
ZNF101
GGPS1
ARID4B
IFRD1
ABT1
FRA10AC1
WDR46
PFDN6
DHX33
SFXN5
TOMM22
PUM3
CANT1
STX16
RPL12
LRSAM1
SCYL3
MRPL54
APBA3
CRK
RAB7A
C1orf54
APH1A
ALKBH8
DPH2
YIPF2
TIMM29
DARS2
CENPL
FBF1
MRPL1
BET1
COG2
KRR1
GFM2
SERBP1
GBA
MAMSTR
KHDC4
RBM28
GEMIN6
RFX1
MIA3
FAM168A
ITPR1
KLHL20
IPO13
SNAP47
JMJD4
R3HDM1
ZNF585A
ZRANB3
ZMPSTE24
SNAPIN
EIF3F
BRIX1
USP15
OAZ3
MORF4L1
NOP16
HIGD2A
ZNF416
MYBL1
MRPS25
UCK1
ABCC5
ZNF599
SART1
PPIP5K2
ZNF180
TLE4
DMAC1
TIMM22
DOHH
MRGBP
RAD52
TRUB2
COQ4
CNPY2
DCAF1
DNAJC28
RWDD1
TATDN3
NSL1
RPL34
RUVBL1
NUP107
RAB8B
RANBP1
TRABD
DNAJC14
ACLY
FBXO38
TRUB1
ZNF691
ZNF221
SLC12A6
ELP6
SETDB1
UBXN8
BABAM1
PARK7
WIZ
DNM2
UBE2V1
RAD51AP2
LTN1
ZIK1
TMEM79
SMG5
MRPL3
TMEM94
SEL1L
TM9SF4
TPRKB
PRPF4
CDC26
PRAF2
SLC39A13
ETFDH
C4orf46
EMSY
ZSCAN5A
SEC13
NUMA1
LRTOMT
ZNF565
ZNF146
TARS2
SH2B1
SH2D6
TAF8
ZNF776
TMEM88
NR1H3
ACP2
SETMAR
NMNAT1
LZIC