ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584310 | iPS derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◣ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

PSMD1
ZNF335
RABL2A
NME6
RABL2B
NUP85
CACTIN
MAPKAPK5
IPO13
VDAC2
VTI1B
POLR3F
DZANK1
NVL
HSPA9
PSMG2
CEP76
SUDS3
DYNC1LI2
EFTUD2
CCDC103
GOSR2
RWDD1
NUP205
LYRM4
FARS2
TBCK
AIMP1
SRD5A1
NSUN2
RPL21
REXO1
BLCAP
HADHB
HADHA
EXOSC5
BCKDHA
POLR2E
MRPS7
GGA3
STAM
C19orf48
PES1
STAM2
NCLN
UPF2
ATP5MG
DCTN1
SKP1
ANAPC7
TSNAX
FARSB
IRGQ
ZNF576
TSN
ISCU
SART3
PNO1
COX7A2L
TTC8
ZRANB2
SEC61B
RABGGTB
PDAP1
BUD31
XPNPEP3
ST13
CAPRIN1
SMC2
PCBP1
TMED1
SF3B3
COG4
MRPL11
RBBP5
VARS1
HOXA4
PI4KB
ACTR10
NDUFA4
IQCG
RPL35A
PROSER1
NHLRC3
RPS27A
CLHC1
RPS23
ATP6AP1L
GOLGA5
SELENOF
HS2ST1
EIF4ENIF1
SLC35B1
DPH6
PSMD12
UFM1
OSGEP
APEX1
MRPS5
PAK1IP1
C6orf52
ADK
AP3M1
RPS12
ANK2
DDX39B
RBKS
BABAM2
SUPV3L1
USP1
BAG6
APOM
ARHGAP24
FAM104A
C17orf80
NEUROG2
ICE1
ARHGAP11A-SCG5
ARHGAP11A
RPS29
LRR1
TM9SF1
SUCLG1
TLE4
PTGES2
COMMD1
CCT4
C16orf91
PIN4
NDUFA10
PAF1
MED29
RPL7
RDH10
TRIM71
ATOH1
PDHB
BNIP3
PRUNE2
METTL11B
HES1
CCDC200
RGS12
VEZT
FGD6
LRIG3
PRDM12
PDHX
APIP
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
MRTO4
EMC1
PDZRN3
SPTBN1
TPO
STK36
RNF25
ZFHX4
TAF9
RAD17
AK6
IGFBP2
CEP41
OAZ3
ZCCHC13
GALNT14
EIF2S3
HOXB4
FHL1
HOXA3
SPACA1
ZNF608
PMAIP1
CTXN3
ID1
RAI14
NEUROG3
GORAB
ATOH8
SEC11C
KIF21B
CETN1
TPRA1
PDE12
HOXA2
CNPY2
JAKMIP1
CCDC198
ZGPAT
ARFRP1
TLE2
SKIL
LMO1
RARA
ACVR1
KLB
MTMR7
HES3
ELAPOR2
BFSP1
UBE2I
NEUROG1
HOXC5
CDC73
CHD7
GTF3A
DDX3X
BICRA
GADD45GIP1
PCBD2
ZNF746
DLG2
PPFIBP2
NEO1
CLEC18C
MUSTN1
SSBP2
TMEM237
MRPL38
PHOX2B
PPP1R3D
FAM217B
ZNF383
DSCAML1
ID3
CLDN2
RPN1
FMN2
GTF3C4
DDX31
USP17L15
CAMTA1
MEF2C
RAN
ALKBH5
DONSON
MEIS3
SPCS1
GLT8D1
CNN3
TMPPE
GLB1
SLC39A14
RCOR3
CS
CHD8
LMO2
FAM181A
PBX2
CBX3
NR2F1
IPO11
RCOR1
ZNF853
ARHGAP10
QPRT
PDPN
HOXD3
LIX1
CASC3
TSPAN11
RARB
LIN28A
REC8
VANGL2
LGALS12
KMT2A
CLEC18B
FAM162A
CCDC58
CPLX1
AXDND1
VOPP1
KIF26A
RBM39
ABAT
SH2B1
ARHGEF28
PHTF1
SRSF11
LRRC40
FGF10
TRDMT1
FGFR4
PRSS47
DUSP2
KAT6B
MAD2L2
DRAXIN
SPOCK2
NBAS
WBP1L
GAS2L3
TXNRD1
ADM
SOX6
SH3BP4
DUSP4
PEX2
ANKRD6
PROS1
WDR74
BBS9
ANKLE2
ID2
ST18
SP5
RBPJ
INSM1
CLGN
GATA4
TMEM70
MALRD1
MYRIP
RBBP7
GADD45G
GPR108
GRSF1
ARSG
KAZALD1
RASSF2
MRPL34
FLOT1
NDUFS7
INAFM2
DUSP6
SPATC1L
RNF149
SH3BP2
UPF3A
MBD2
FOXP1
LPIN1
HUS1
RPS10-NUDT3
RPS10
HSPA1B
ARID5A
HEXIM2
ZFHX3
PARK7
MTRNR2L2
TIGD1
EIF4E2
NELFA
CCPG1
C15orf65
RPS6KA1
SEC14L1
C11orf24
KCNAB2
HNRNPD
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
GRHL3
KDM3A
SLCO4C1
CCDC88A
SPECC1
ARHGEF10L
NADK
FGR
BRWD1
STK38
KLF17
FGFRL1
NBEAL2
NKD1
SKIV2L
NELFE
BIN2
NCOA2
MTMR4
CDCA7L
DIAPH1
ZNF76
NBPF1
USP15
WNT10B
SNX3
POR
CABIN1
LPCAT3
MTRNR2L8
LNPEP
CPSF4L
DENND2D
CDC42EP3
RSRC1
CCDC174
DIAPH3
RUNX1T1
PRDM10
IQCH
AAGAB
NFKBIA
HEBP2
ZCCHC3
TBC1D8
CD38
VAV1
TRAF4
OTX1
ATP23
CMTR1
PNKD
PCNA
DHRS3
POLR2J3
RASSF5
ING1
EXOSC4
IQGAP2
PPIB
MINDY2
CNOT2
SLC9A1
OTUD7B
PKN2
PLCB2
RYBP
SHB
NKIRAS1
PEX14
H6PD
YTHDF2
SMARCD2
IFRD2
FAM110A
PCTP
NDFIP2
PRDM1
HESX1
CFD
TLE6
SLC35E2B
PLEKHO2
TBRG4
NR1D2
CCDC114
JAK3
CYCS
RNF139
SH3TC1
DYNLL1
SP7
POLR3A
ZDHHC4
HMGCS1
ARIH2
CBWD5
CBWD3
LTBR
DPP9
PIK3AP1
CLIC4
BNIP2
ZNF740
CSAD
SOD2
KCTD6
ADCY7
HNRNPA2B1
PRSS56
AKIRIN1
DGKZ
SLC35E2A
KANSL3
CBFA2T3
HOXB3
PDE4D
PTGES3
NR2C1
TMEM222
NOTCH2
FAF2
PKM
C12orf29
SRPRA
HES5
RBL2
FCHSD2
SSX2IP
CTTN
PXYLP1
USP3
ZNF341
ATXN1L
SNAPC3
CD164
TBX2
TRMT6
MCM8
SLC39A13
CSRNP1
BAZ1B
MRPS24
TRERF1
CALM2
ANKRD13D
DTNB
RMND5A
RARG
ARHGAP4
UNC13D
TTI2
PIP4P2
LAPTM5
MAP2K1
CENPH
GATD3B
GATD3A
CLTC
RFESD
ZNF25
USP42
MTCH1
MAD1L1
KCNH2
SLC10A2
IL21R
STX18
PPCDC
DGAT2
THRAP3
RNF125
RASGRP2
ARHGEF1
PEAK3
MRPS31
ZNF503
GFRA3
ATG16L2
COX5A
RAD50
PKDCC
EPM2A
EIF4H
CDX1
ZSWIM6
ZBTB17
PSMD3
PIKFYVE
HECTD3
ARL4A
SBNO2
SDE2
KAT6A
FBXO41
RWDD2A
PGM3
MAPRE2
SMPD1
KEAP1
MAPKBP1
RXRA
CPVL
CHN2
WTAP
ZNF414
STRADA
CBWD6
MTF2
ERLIN2
TCHP
ASNS
MAGEF1
ZNF318
PEX3
ADAT2
PRKDC
MTRF1L
MCM4
NIBAN3
USPL1
HMGB1
MC1R
FXYD2
PANK2
UBL7
C1orf159
ATAD3B
MAST2
FAM120B
OR2L13
DYNLT1
NGRN
TCF4
PHF19
MCU
BUD13
TIGD5
EEF1D
VPS37C
RER1
MORN1
TUBB
RNF103-CHMP3
MAPKAPK3
CISH
NIBAN2
IFNGR1
ARF3
GPATCH8
C18orf32
NCBP2AS2
NCBP2
UPP1
HOXC6
USP21
CYB5R4
GABRB2
ATAD3A
CNOT6
KIF1C
INCA1
METTL25
FAM227B
DTWD1
DDX23
CCDC59
TDP2
DENND1A
BHLHE40
ACOT13
RAP1GAP2
FABP5
YY1AP1
DAP3
C12orf65
HPF1
ADAM17
NINJ2
ACOT2
PCMT1
SLC35E3
KMT5A
SPDYE14
SPDYE10P
NMNAT1
LZIC
SYPL1
UBE2L3
SPIN1
RIMBP3C
RIMBP3B
ARHGEF18
ARHGAP45
TSPAN4
POLR2L
SEH1L
NUDT15
CEP135
CCNL1
ASB1
NANP
MYCBP2
CACYBP
GSPT1
PTDSS1
MTERF3
SERTAD2
SLC7A5
MT2A
LSM5
AVL9
UNK
EIF3D
MTMR1
CDS2
MFN2
ATG5
HYLS1
LTB4R
TRAP1
C21orf91
ZNF219
LANCL2
RPLP1
RITA1
DDX54
APBB1IP
TBX3
CTSC
HOXC4
ADORA2A
KRI1
ITPRIP
DISP3
MEPCE
ASH1L
ZCCHC24
SNUPN
PSMF1
HMGCL
GFER
EIF5
GTF2H3
EIF2B1
DLX2
TLE3
KDM1A
USP34
TRAM1
UBIAD1
SP2
SLC16A6
THUMPD3
MAPK6
IMPA1
CD63
FNTA
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
PDZD2
NAA40
MBD6
ARF4
ZFAND2A
MKRN2
LAMP1
CARMIL1
NOC4L
DDX51
IL6R
TAS1R1
NOL9
PTK2B
NREP
ARHGAP27
BRAP
ACAD10
RPS3
EIF1B
FKBP1A
RPL8
CHST11
LONRF3
HNRNPF
ZCWPW1
PGD
ATG101
TMEM65
PGLS
TKFC
DDB1
DNAH7
MDM2
RIMBP3
POU2F1
ELOVL6
GARS1
ZNF395
GFUS
LCOR
FAF1
CNPY3
SGK1
BOD1L1
SUPT4H1
SMIM20
DNAJB2
TMEM199
POLDIP2
FKBP5
CSNK1A1
GALE
DYNC2H1
CDC42
POLD2
PPIL4
SPRY2
DENND4B
SMG6
GPCPD1
EHD1
DHRS4L2
NCKAP5L
MRPL20
CXXC4
RERE
C6orf89
SNAPC5
PPP4R3B
B3GALNT2
CASTOR2
RCC2
POLG
ABHD12
CIAO2A
TBL3
PRKAB1
IPP
RAC2
ZBTB45
NUS1
TPP2
RBSN
CCDC43
TAF12
ZNF593
UBE2K
C1orf232
ZC3H6
FDX1
MACROH2A1
PTP4A2
RNF216
NCBP3
PLEKHM1
CLCN3
FOS
INTS5
THYN1
ACAD8
TMEM41A
RAB11FIP1
DCP1A
SLC35A1
LRRC59
CD93
SPTBN5
CLN5
RGS14
MTCH2
PSTPIP1
NDUFV1
C15orf61
ETFA
MYADM
PPP1R8
ZBTB12
STARD3
HIBADH
DRAP1
C11orf68
ZNF774
MARCHF7
PRR19
PAFAH1B3
ATXN2
SPPL2A
FADS2
FADS1
RBM15B
PRKAG1
ZNF397
SECISBP2L
WDR53
FBXO45
CAP1
MIDEAS
CNR1
ABCF1
IQSEC1
DTX2
CYP2W1
LGALS1
IDS
RCN2
SCAMP4
ADAT3
SEC13
NOL4L
RAB3D
ARID1A
PURB
FAM3C
MT1G
FOXN2
BIRC2
DHDDS
ADPGK
SPATC1
MVK
NIBAN1
EXD1
CHP1
OSBPL3
DBI
C2orf76
UHRF2
SEPTIN2
RNF168
HDLBP
LST1
SLC43A3
GFRA1
TRNAU1AP
TESMIN
SIPA1
RFC2
SLC39A7
RXRB
MRPS28
CLK1
MAP2K3
RNF19A
PLAGL1
ZFAND3
URGCP
PSMD9
HPD
SNX15
RUNX3
NSUN6
ARL5B
SEMA4B
GNA13
TMEM123
ZZZ3
ANKRD36C
PHF13
YARS1
S100PBP
CPQ
ZNF212
RNF34
HBS1L
CELF4
FBXL18
EIF3B
DLST
ZFPL1
PKNOX1
CDCA5
ABHD2
TMEM230
MGST1
CCNL2
TAF15
ICE2
SNAP29
PI4KA
MYL12B
UBE2V2
TRIAP1
KATNA1
FES
CSRNP2
MESD
RANBP3
GTF2H2C
GTF2H2C_2
ZCCHC4
POLDIP3
ERMARD
C15orf40
VPS36
NEURL2
CTSA
TUBGCP3
RNF138
GZF1
MRPS15
IGFBP6
HTRA2
TNPO1
C15orf39
FANCE
POLR2J
CDK11B
CDK11A
IGF2BP3
SOX12
REL
CLYBL
RAB37
ZNF202
DDX46
SRSF2
MFSD11
METTL23
JMJD6
HSPE1-MOB4
HSPE1
HSPD1
WDR18
STAT1
SLC25A19
MTHFR
LRRC37A3
CLCN6
STAU2
FAM76B
CEP57
MTHFD1L
CRLS1
VPS37A
MALT1
F2RL3