ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584302 | iPS derived chondrocytes
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◣ SRX3584302: iPS derived chondrocytes

◢ SRX3584303: iPS derived chondrocytes

◢ SRX3584304: iPS derived chondrocytes

◢ SRX3584305: iPS derived chondrocytes

◢ SRX3584306: iPS derived chondrocytes

◢ SRX3584307: iPS derived chondrocytes

◢ SRX3584308: iPS derived chondrocytes

◢ SRX3584309: iPS derived chondrocytes

◢ SRX3584310: iPS derived chondrocytes

◢ SRX3584311: iPS derived chondrocytes

◢ SRX3584312: iPS derived chondrocytes

◢ SRX3584313: iPS derived chondrocytes

◢ SRX6039037: iPS derived chondrocytes

◢ SRX6039038: iPS derived chondrocytes

◢ SRX6039039: iPS derived chondrocytes

◢ SRX6039040: iPS derived chondrocytes

◢ SRX6039041: iPS derived chondrocytes

◢ SRX6039042: iPS derived chondrocytes

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
SP5
RABL2B
RABL2A
POLR3F
DZANK1
MAPKAPK5
CACTIN
NME6
NUP85
PSMG2
CEP76
HSPA9
IPO13
NVL
PSMD1
POLR2E
SUDS3
RWDD1
NEUROG2
VDAC2
C19orf48
SLC35B1
EXOSC5
BCKDHA
DYNC1LI2
NDUFA4
IRGQ
ZNF576
TSN
FARSB
DCTN1
UPF2
RPL21
GOSR2
TBCK
AIMP1
VTI1B
EFTUD2
CCDC103
NUP205
ATP5MG
REXO1
PMAIP1
NCLN
ANAPC7
ACTR10
CAPRIN1
BLCAP
STAM
SEC61B
MRPS7
GGA3
HADHB
HADHA
STAM2
PNO1
SKP1
DPH6
PI4KB
IQCG
RPL35A
GRSF1
PES1
TMED1
COX7A2L
SRD5A1
NSUN2
PAK1IP1
C6orf52
GOLGA5
TSNAX
TTC8
LYRM4
FARS2
RBKS
BABAM2
RBBP5
UBE2I
ICE1
MRPS5
PSMD12
UFM1
PDAP1
BUD31
ISCU
SART3
PAF1
MED29
PCBP1
RPS12
RPS23
ATP6AP1L
SF3B3
COG4
USP1
RPS27A
CLHC1
PROSER1
NHLRC3
FAM104A
C17orf80
SELENOF
HS2ST1
SUPV3L1
VARS1
SMC2
ZRANB2
RABGGTB
TM9SF1
EIF4ENIF1
PRSS56
ADK
AP3M1
MRPL11
BAG6
APOM
PIN4
NEUROG3
OSGEP
APEX1
PTGES2
SPECC1
BICRA
XPNPEP3
ST13
DDX39B
STK36
RNF25
OR2L13
COMMD1
CCT4
RPS29
LRR1
NDUFA10
MSGN1
NEUROG1
SUCLG1
ATOH1
OAZ3
PDZD2
CCDC200
GADD45GIP1
ID2
H3C12
TLE3
CDX1
GADD45G
ARHGAP11A-SCG5
ARHGAP11A
CERS6
ZGPAT
ARFRP1
TAF9
RAD17
AK6
ZSWIM6
RPL7
RDH10
TLE6
ZNF383
SEC11C
STK38
CNPY2
HOXA3
SLC39A7
RXRB
IGFBP2
RPN1
TMPPE
GLB1
EBP
NEBL
MRTO4
EMC1
CDC73
HOXA4
EIF2S3
PDHX
APIP
ZNF503
CLGN
HOXB4
KLF17
ANKLE2
SMPD1
CPSF4L
OTX2
COQ3
VENTX
SKIL
GPR78
DKK1
NKD1
GTF3C4
DDX31
PDPN
HOXA2
BNIP2
GORAB
TLE2
ST18
SP8
PDE12
MEIS3
PTGES3
OTX1
USP17L22
USP17L20
USP17L15
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
GIMAP5
METTL11B
ALKBH5
ZNF746
SP7
CSTF2T
ASIP
POLR3A
TPRA1
HERPUD1
PRUNE2
REC8
CTXN3
SPCS1
GLT8D1
CPN2
FAM3C
CPVL
CHN2
MYRIP
LZTFL1
PCBD2
VOPP1
HES1
VEZT
FGD6
BNIP3
WDR74
BBS9
NBAS
C16orf91
TLE4
RBPJ
ANK2
PDHB
INSM1
GATA4
TMEM70
MALRD1
RARA
MRPL38
RBBP7
GPR108
ARSG
KAZALD1
NR2F1
KMT2A
PRDM12
ZFHX4
RASSF2
RARB
MRPL34
SH2B1
FLOT1
NDUFS7
INAFM2
DUSP6
BFSP1
SPATC1L
RNF149
SH3BP2
AXDND1
UPF3A
MBD2
FOXP1
RGS12
ZNF608
LPIN1
CBX3
HUS1
LIN28A
CS
RPS10-NUDT3
RPS10
HSPA1B
ARID5A
NEO1
HEXIM2
ZFHX3
PARK7
DSCAML1
MTRNR2L2
TIGD1
EIF4E2
NELFA
CCPG1
C15orf65
RPS6KA1
SEC14L1
SRSF11
LRRC40
C11orf24
KCNAB2
ARHGAP24
RAI14
KAT6B
HNRNPD
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
GRHL3
KDM3A
HOXC5
SLCO4C1
CCDC88A
ID1
ARHGEF10L
NADK
FGR
BRWD1
FGFRL1
NBEAL2
SKIV2L
NELFE
BIN2
NCOA2
MTMR4
CDCA7L
DIAPH1
ZNF76
NBPF1
USP15
CAMTA1
WNT10B
SNX3
POR
MEF2C
CABIN1
LPCAT3
MTRNR2L8
LNPEP
DDX3X
DENND2D
CDC42EP3
RSRC1
CCDC174
DIAPH3
RUNX1T1
PRDM10
IQCH
AAGAB
NFKBIA
HEBP2
ZCCHC3
TBC1D8
CD38
VAV1
TRAF4
ATP23
CMTR1
PNKD
PCNA
DHRS3
POLR2J3
RASSF5
SPACA1
ING1
HES3
CLDN2
EXOSC4
IQGAP2
PPIB
MINDY2
CNOT2
SLC9A1
OTUD7B
PKN2
PLCB2
RYBP
SHB
NKIRAS1
PEX14
H6PD
YTHDF2
SMARCD2
IFRD2
FAM110A
PCTP
NDFIP2
PRDM1
HESX1
CFD
SLC35E2B
PLEKHO2
TBRG4
NR1D2
CCDC114
JAK3
CYCS
RNF139
SH3TC1
DYNLL1
ZDHHC4
CEP41
HMGCS1
ARIH2
GTF3A
CBWD5
CBWD3
LTBR
DPP9
PIK3AP1
CLIC4
ZNF740
CSAD
SOD2
KCTD6
ADCY7
ADM
HNRNPA2B1
AKIRIN1
KIF26A
DGKZ
SLC35E2A
KANSL3
CBFA2T3
HOXB3
PDE4D
TXNRD1
NR2C1
TMEM222
NOTCH2
FAF2
PKM
C12orf29
SRPRA
HES5
RBL2
FCHSD2
SSX2IP
KIF21B
CTTN
PXYLP1
USP3
ZNF341
ATXN1L
SNAPC3
CD164
TBX2
TRMT6
MCM8
SLC39A13
CSRNP1
BAZ1B
MRPS24
TRERF1
CALM2
ANKRD13D
DTNB
RMND5A
RARG
ARHGAP4
UNC13D
TTI2
PIP4P2
LAPTM5
MAP2K1
CENPH
GATD3B
GATD3A
CLTC
RFESD
ZNF25
VANGL2
USP42
MTCH1
MAD1L1
KCNH2
SLC10A2
IL21R
STX18
PPCDC
DGAT2
THRAP3
RNF125
RASGRP2
ARHGEF1
PEAK3
MRPS31
GFRA3
ATG16L2
COX5A
RAD50
PKDCC
EPM2A
EIF4H
LRIG3
ZBTB17
PSMD3
PIKFYVE
HECTD3
ARL4A
SBNO2
SDE2
KAT6A
FBXO41
RWDD2A
PGM3
MAPRE2
KEAP1
MAPKBP1
RXRA
WTAP
ZNF414
STRADA
CBWD6
MTF2
ERLIN2
CASC3
TCHP
ASNS
MAGEF1
ZNF318
RCOR1
PEX3
ADAT2
PRKDC
MTRF1L
MCM4
NIBAN3
USPL1
HMGB1
MC1R
FXYD2
PANK2
UBL7
C1orf159
ATAD3B
MAST2
HOXD3
FAM120B
DYNLT1
NGRN
TCF4
PHF19
MCU
BUD13
TIGD5
EEF1D
VPS37C
RER1
MORN1
TUBB
RNF103-CHMP3
MAPKAPK3
CISH
NIBAN2
IFNGR1
ARF3
GPATCH8
C18orf32
NCBP2AS2
NCBP2
UPP1
HOXC6
LIX1
USP21
CYB5R4
GABRB2
DONSON
ATAD3A
CNOT6
JAKMIP1
KIF1C
INCA1
METTL25
FAM227B
DTWD1
DDX23
CCDC59
TDP2
DENND1A
BHLHE40
ACOT13
RAP1GAP2
FABP5
YY1AP1
DAP3
C12orf65
HPF1
ADAM17
NINJ2
ACOT2
PCMT1
SLC35E3
KMT5A
SPDYE14
SPDYE10P
NMNAT1
LZIC
SYPL1
UBE2L3
SPIN1
RIMBP3C
RIMBP3B
ARHGEF18
ARHGAP45
TSPAN4
POLR2L
SEH1L
NUDT15
CEP135
CCNL1
ASB1
NANP
MYCBP2
CACYBP
GSPT1
PTDSS1
MTERF3
SERTAD2
SLC7A5
MT2A
LSM5
AVL9
UNK
EIF3D
MTMR1
CDS2
MFN2
ATG5
HYLS1
LTB4R
TRAP1
C21orf91
ZNF219
LANCL2
RPLP1
RITA1
DDX54
APBB1IP
TBX3
CTSC
HOXC4
ADORA2A
KRI1
ITPRIP
DISP3
MEPCE
ASH1L
ZCCHC24
SNUPN
PSMF1
HMGCL
GFER
EIF5
GTF2H3
EIF2B1
QPRT
DLX2
KDM1A
USP34
TRAM1
UBIAD1
SP2
SLC16A6
THUMPD3
MAPK6
IMPA1
CD63
FNTA
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
NAA40
MBD6
ARF4
ZFAND2A
MKRN2
LAMP1
CARMIL1
NOC4L
DDX51
IL6R
TAS1R1
NOL9
PTK2B
NREP
ATOH8
ARHGAP27
BRAP
ACAD10
RPS3
EIF1B
FKBP1A
RPL8
DUSP4
CHST11
LONRF3
HNRNPF
ZCWPW1
PGD
ATG101
ACVR1
TMEM65
PGLS
TKFC
DDB1
DNAH7
MDM2
TRDMT1
RIMBP3
POU2F1
ELOVL6
GARS1
ZNF395
GFUS
RAN
LCOR
FAF1
CNPY3
SGK1
BOD1L1
SUPT4H1
RCOR3
SMIM20
DNAJB2
TMEM199
POLDIP2
FKBP5
CSNK1A1
GALE
DYNC2H1
CDC42
POLD2
PPIL4
SPRY2
DENND4B
SMG6
GPCPD1
EHD1
DHRS4L2
NCKAP5L
MRPL20
CXXC4
RERE
C6orf89
SNAPC5
PPP4R3B
B3GALNT2
CASTOR2
RCC2
POLG
ABHD12
CIAO2A
TBL3
PRKAB1
IPP
RAC2
ZBTB45
NUS1
WBP1L
TPP2
RBSN
CCDC43
TAF12
PEX2
ZNF593
UBE2K
C1orf232
ZC3H6
FDX1
MACROH2A1
PTP4A2
RNF216
NCBP3
PLEKHM1
CLCN3
FOS
INTS5
THYN1
ACAD8
TMEM41A
RAB11FIP1
DCP1A
SLC35A1
LRRC59
CD93
SPTBN5
CLN5
RGS14
MTCH2
PSTPIP1
NDUFV1
C15orf61
ETFA
MYADM
PPP1R8
ZBTB12
STARD3
HIBADH
DRAP1
C11orf68
ZNF774
MARCHF7
PRR19
PAFAH1B3
ATXN2
SPPL2A
FADS2
FADS1
RBM15B
PRKAG1
ZNF397
SECISBP2L
WDR53
FBXO45
CAP1
MIDEAS
CNR1
ABCF1
IQSEC1
DTX2
CYP2W1
LGALS1
IDS
RCN2
SCAMP4
ADAT3
SEC13
NOL4L
RAB3D
ARID1A
PURB
MT1G
FOXN2
BIRC2
DHDDS
ADPGK
SPATC1
MVK
NIBAN1
EXD1
CHP1
OSBPL3
DBI
C2orf76
UHRF2
SEPTIN2
RNF168
HDLBP
LST1
SLC43A3
GFRA1
TRNAU1AP
TESMIN
SIPA1
RFC2
MRPS28
CLK1
MAP2K3
RNF19A
PDZRN3
PLAGL1
ZFAND3
URGCP
PSMD9
HPD
SNX15
RUNX3
NSUN6
ARL5B
SEMA4B
GNA13
TMEM123
ZZZ3
ANKRD36C
PHF13
YARS1
S100PBP
CPQ
ZNF212
RNF34
HBS1L
CELF4
FBXL18
EIF3B
DLST
ZFPL1
PKNOX1
CDCA5
ABHD2
TMEM230
MGST1
CCNL2
TAF15
ICE2
SNAP29
PI4KA
MYL12B
UBE2V2
TRIAP1
KATNA1
FES
CSRNP2
MESD
RANBP3
GTF2H2C
GTF2H2C_2
ZCCHC4
POLDIP3
ERMARD
C15orf40
VPS36
NEURL2
CTSA
TUBGCP3
RNF138
GZF1
MRPS15
IGFBP6
HTRA2
TNPO1
C15orf39
FANCE
POLR2J
CDK11B
CDK11A
TPO
IGF2BP3
SOX12
REL
CLYBL
RAB37
ZNF202
DDX46
SRSF2
MFSD11
METTL23
JMJD6
HSPE1-MOB4
HSPE1
HSPD1
WDR18
STAT1
SLC25A19
MTHFR
LRRC37A3
CLCN6
STAU2
FAM76B
CEP57
MTHFD1L
CRLS1
VPS37A
MALT1
F2RL3
CNOT7
CGAS
ACTR3
UGGT2
TMEM217
TBC1D22B
PPP1R18
SDF4
B3GALT6
SLC39A6
ELP2
RTN4
FBXO31
CLEC18C
SYNRG
EEF2
RPS6KB2
LCE3A
CCDC92
ARID2
WASF2
TCF12
PA2G4
RB1
SUSD1
KBTBD2
MANF
LIN28B
GCFC2
INTS1
PIGU
PGK1
CHAMP1
UBOX5
FASTKD5