Trypanosomes Database
2014/05/07Web Site: http://www.tanpaku.org/tdb/
HTTPS Site: https://dbarchive.biosciencedbc.jp/data/trypanosome/
The database of enzymes that are effective targets for drug development that can control trypanosomiasis.
README Content
1. Database Component
2. Data Description
2.1 README
| Data name | README |
| Description of data contents | HTML file to describe "Trypanosomes Database" data. |
| File | README_e.html(English) |
2.2 Protein
| Data name | Protein |
| Description of data contents | It is a summaly table of protein information; such as sequences of mRNA and Amino acids, functions and metabolic pathways related to the protein. There is also information of candidate inhibitor of the protein. |
| File | trypanosome.zip (1.4 KB) |
Data items are the following:
| Data item | Description |
|---|---|
| symbol | Symbol of the protein |
| name | Name of the protein |
| organism | Organism of the protein |
| mRNA sequence | GI number of the mRNA sequence (Link to the NCBI Nucleotide in the Simple search site) |
| protein sequence | GI number of the Amino Acid sequence (Link to the NCBI Protein in the Simple search site) |
| entrez | Gene ID (NCBI Gene) |
| uniprot | UniProt Accession number |
| wikipedia | Search term in Wikipedia |
| ec | Enzyme Commission number |
| omim | OMIM ID (Online Mendelian inheritance in Man) |
| map | Location of the gene on a chromosome or its chromosome number |
| pdb | PDB ID (PDBj: Protein Data Bank Japan) |
| kegg pathway | ID of the KEGG pathway |
| candidate inhibitor | Name of candidate inhibitor of the protein |
| drugport id | DrugBank ID of candidate inhibitor |
3. License
You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.
The license for this database is specified in the Creative Commons Attribution-Share Alike 2.1 Japan.
If you use data from this database, please be sure attribute this database as follows: "Trypanosomes DB © Targeted Proteins Research Program licensed under CC Attribution-Share Alike 2.1 Japan".
The summary of the Creative Commons Attribution-Share Alike 2.1 Japan is found here.
With regard to this database, you are licensed to:
- freely access part or whole of this database, and acquire data;
- freely redistribute part or whole of the data from this database; and
- freely create and distribute database and other derivative works based on part or whole of the data from this database,
under the license, as long as you comply with the following conditions:
- You must attribute this database in the manner specified by the author or licensor when distributing part or whole of this database or any derivative work.
- You must distribute any derivative work based on part or whole of the data from this database under the license.
- You need to contact the Licensor shown below to request a license for use of this database or any part thereof not licensed under the license.
Yata 1111, Mishima, Shizuoka 411-8540, JAPAN
Platform for Drug Discovery, Informatics, and Structural Life Science
Research Organization of Information and Systems
National Institute of Genetics
E-mail: p4d-info[at]nig[dot]ac[dot]jp
4. Update History
| Date | Update contents |
|---|---|
| 2014/05/07 | The contact information is corrected. The features and manner of utilization of the database are corrected. |
| 2014/02/04 | Trypanosomes Database English archive site is opened. |
| 2011/04/04 | Trypanosomes Database (http://www.tanpaku.org/tdb/) is opened. |
5. Literature
-6. Contact address
When you have any question about "Trypanosomes Database", contact the following:
Yata 1111, Mishima, Shizuoka 411-8540, JAPAN
Platform for Drug Discovery, Informatics, and Structural Life Science
Research Organization of Information and Systems
National Institute of Genetics
E-mail: p4d-info[at]nig[dot]ac[dot]jp