"movie_id","update","doi","template_type","date","title","description","tag","YouTubeURL","tdiaryURL","linked_DOI","imageURL","mov file","thumbnail","digest1","digest2","digest3","digest4","digest5","digest6","digest7","digest8","digest9","digest10","digest11","digest12","digest13","digest14","digest15","digest16","digest17","digest18","digest19","digest20","digest21","digest22","digest23","digest24","digest25","digest26","digest27","digest28","digest29","digest30","digest31","digest32","digest33","digest34","digest35","digest36","digest37","digest38","digest39","digest40","digest41","digest42","digest43","digest44","digest45","digest46","digest47","digest48","digest49","digest50","digest51","digest52","digest53","digest54","digest55"
"1230","","togotv.2017.041","","20170428","遺伝で決まること、決まらないこと @ 遺伝研一般公開講演会2017","本日の統合TVは、2017年4月8日に開催された国立遺伝学研究所 一般公開 講演会2017から、国立遺伝学研究所 人類遺伝研究部門 井ノ上 逸朗 教授 による「遺伝で決まること、決まらないこと」をお送りします。約46分です。
「次世代シーケンサーと称される新世代シーケンシング技術の発展は目覚しいものがあり、ゲノム医学推進の駆動力となり医学・医療を一変させつつあります。なにしろ、ヒトの全ゲノム情報が10万円程度で解析できるようになっています。今回、最先端のゲノム研究からわかった遺伝研究について紹介しますが、研究が進むと遺伝が関係ないことも明らかになります。例えば、近視は遺伝が関与するとされていた典型的な表現型ですが、どうも遺伝の影響ではないようです。また膨大なゲノム情報が得られるとともに、がんにおける遺伝子異常が次々と明らかになっており、それに伴い治療方針も決定される時代となりつつあります。本講演では「遺伝」をキーワードにさまざまな話題提供したいと思います。」","講演, 遺伝子,ゲノム,NGS","https://youtu.be/yOU3soygiDM","http://togotv.dbcls.jp/movie/170428NIG2017_inoue.mov","http://doi.org/10.7875/togotv.2017.039","http://togotv.dbcls.jp/images/20170428_0.jpg","170428NIG2017_inoue.mov","thumbnail/20170428_0.jpg","1. DNA配列と病気〜 (0:02:00)","2. 乳がんの原因遺伝子と遺伝子検査〜 (0:03:42)","3. 次世代シーケンサーとは〜 (0:08:53)","4. ゲノム解析が医療に応用された〜 (0:11:34)","5. 近視は遺伝?環境?〜 (0:16:53)","6. 遺伝子検査の実態〜 (0:21:57)","7. 遺伝子でどこまでわかるの?〜 (0:24:55)","8. ゲノム情報とスポーツ〜 (0:27:17)","9. 遺伝病の検査(血液検査、着床前遺伝子診断等)〜 (0:31:05)","10. 個人が持つ変異数〜 (0:38:37)","11. 遺伝と環境どちらが大事?〜 (0:40:26)","12. トークのまとめ〜 (0:45:34)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1229","","togotv.2017.040","","20170410","次世代シーケンシングを用いた遺伝子発現解析のためのガイド @ AJACS尾張","本日の統合TVは、2017年1月31日〜2月1日に開催された統合データベース講習会:AJACS尾張から、理化学研究所 ライフサイエンス技術基盤研究センター 原 雄一郎 氏 による「次世代シーケンシングを用いた遺伝子発現解析のためのガイド」をお送りします。約1時間51分です。
本講習では、RNA-seqを用いて2群間の発現比較解析を行いたい方や、なるべく自分でデータをハンドリングしたいけど、プログラムの実行だけでなく計算機のセットアップするスキルも無い方を主な対象として、RNA-seqの実験を問題なく行い、データが持つ生物学的情報を正しく解釈するためのリテラシーを学びます。また、実際のデータのハンドリング(計算機を用いてシーケンスリードから発現定量値を算出)の概要について紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,データベース,ウェブツール,発現解析,可視化,RNA-seq","https://youtu.be/Tc1X420vzYE","http://togotv.dbcls.jp/movie/170410AJACS64_04_hara.mov","http://doi.org/10.7875/togotv.2017.040","http://togotv.dbcls.jp/images/20170410_0.jpg","170410AJACS64_04_hara.mov","thumbnail/20170410_0.jpg","1. イントロダクション~RNA-seq: 次世代シーケンシングデータから遺伝子発現を知る (0:08:25)","2. RNA-seqの入口~実験計画: RNA-seqを行う前に (0:14:55)","3. RNA-seqの入口~発現解析の流れ (0:29:48)","4. RNA-seqの出口~クオリティーチェック(実習) (0:31:52)","5. RNA-seqの出口~データの可視化(実習) (1:12:08)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1228","","togotv.2017.039","","20170409","次世代シーケンサー(NGS)解析・実践編:目的別データ解析 @ AJACS尾張","本日の統合TVは、2017年1月31日〜2月1日に開催された統合データベース講習会:AJACS尾張から、ライフサイエンス統合データベースセンター (DBCLS) 仲里 猛留 による「次世代シーケンサー(NGS)解析・基礎編:関連データベース、ツール」をお送りします。約1時間44分です。
本講習では、主に次世代シーケンサー(NGS)実験によって得られた種々の目的別データを解析するために必要な基礎知識を概説するとともに、それらの実際について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,データベース,ウェブツール,スパコン,発現解析,可視化,ChIP-seq,メタゲノム,変異解析","https://youtu.be/xwD67OBWvNE","http://togotv.dbcls.jp/movie/170409AJACS64_03_nakazato.mov","http://doi.org/10.7875/togotv.2017.039","http://togotv.dbcls.jp/images/20170409_0.jpg","170409AJACS64_03_nakazato.mov","thumbnail/20170409_0.jpg","1. 概略 (0:06:44)","2. 参考リソース (0:11:32)","3. クオリティチェック・トリミング (0:43:55)","4. 発現解析(mapping) (00:56:56)","5. 発現解析(de novo) (01:10:28)","6. その後の発現解析 (01:18:23)","7. SNV/Indel解析 (01:27:18)","8. ChIP-Seq (01:32:54)","9. メタゲノム (01:40:38)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1227","","togotv.2017.038","","20170408","次世代シーケンサー(NGS)解析・基礎編:関連データベース、ツール @ AJACS尾張","本日の統合TVは、2017年1月31日〜2月1日に開催された統合データベース講習会:AJACS尾張から、ライフサイエンス統合データベースセンター (DBCLS) 仲里 猛留 による「次世代シーケンサー(NGS)解析・基礎編:関連データベース、ツール」をお送りします。約1時間21分です。
本講習では、主に次世代シーケンサー(NGS)解析に必要な基礎知識を概説するとともに、NGSに関連するデータベースやウェブツール(NCBI Sequence Read Archive (SRA)、European Nucleotide Archive (ENA)、DDBJ Sequence Read Archive (DRA)、DBCLS SRAなど)の使い方について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,データベース,ウェブツール,可視化","https://youtu.be/kntd_0--XPk","http://togotv.dbcls.jp/movie/170408AJACS64_02_nakazato.mov","http://doi.org/10.7875/togotv.2017.038","http://togotv.dbcls.jp/images/20170408_0.jpg","170408AJACS64_02_nakazato.mov","thumbnail/20170408_0.jpg","1. NGSとは? (0:15:35)","2. NGSのデータベース (0:30:53)","3. SRAの検索 (0:35:59)","4. SRAへの登録 (01:12:51)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1226","","togotv.2017.037","","20170407","NBDCの紹介とNBDCが提供するサービス @ AJACS尾張","本日の統合TVは、2017年1月31日〜2月1日に開催された統合データベース講習会:AJACS尾張から、バイオサイエンスデータベースセンター (NBDC) 森 亮樹 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約1時間21分です。
本講習では、主にIntegbioデータベースカタログ、生命科学データベース横断検索、生命科学系データベースアーカイブ、NBDCヒトデータベースの使い方について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NBDC,データベース","https://youtu.be/WKCZMqgL7UU","http://togotv.dbcls.jp/movie/170407AJACS64_01_mori.mov","http://doi.org/10.7875/togotv.2017.037","http://togotv.dbcls.jp/images/20170407_0.jpg","170407AJACS64_01_mori.mov","thumbnail/20170407_0.jpg","1. 講習を始める前に (0:00:55)","2. JSTとNBDC、データ共有の取り組みについて (0:02:53)","3. 主なサービス(カタログ、一括検索、データの一括ダウンロード)の紹介 (0:19:37)","4. 主なサービス(カタログ、一括検索、データの一括ダウンロード)の紹介~NBDCのポータルサイト (0:20:08)","5. 主なサービス(カタログ、一括検索、データの一括ダウンロード)の紹介~DBのカタログ (0:21:56)","6. 主なサービス(カタログ、一括検索、データの一括ダウンロード)の紹介~DBの一括検索 (0:32:27)","7. 主なサービス(カタログ、一括検索、データの一括ダウンロード)の紹介~データの一括ダウンロード (0:44:53)","8. ヒトに関するデータ関連のサービス (0:57:36)","9. その他のサービス例 (1:04:18)","10. おわりに (1:09:00)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1225","","togotv.2017.036","","20170406","Spotfire Cloudの使い方","TIBCO Spotfireは、データ可視化・解析ソフトウェアです。ドラッグアンドドロップなどの簡単な操作で大量のデータから表やグラフを素早く作成し解析できることが特長です。Spotfire Cloudはそのクラウド版です。ウェブブラウザ上で動作するので、本来Windowsのみで動作するTIBCO Spotfireを導入できない環境でも使用することができます。
今回は、ヒトの脂肪細胞分化のマイクロアレイデータ(GSE1657)を一部改変したサンプルデータを使って、基本的な操作方法について説明します。","可視化,発現解析,遺伝子,ウェブツール,環境設定","https://youtu.be/irncF2oSjz0","http://togotv.dbcls.jp/movie/170406Spotfire_cloud.mov","http://doi.org/10.7875/togotv.2017.036","http://togotv.dbcls.jp/images/20170406_0.jpg","170406Spotfire_cloud.mov","thumbnail/20170406_0.jpg","1. Free Trial の申請方法 (0:33) ","2. 新しい解析を始める (1:08) ","3. Recommeded Visualizations機能 (2:02) ","4. プロットの作成・操作 (3:03) ","5. 可視化手法の選択 (3:56) ","6. データの絞込み (5:36) ","7. メニューバーから選択できる項目 (6:46) ","8. お試し期間の延長方法 (9:32) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1224","","togotv.2017.035","","20170405","オミクス・データと個人情報 @ 質量分析インフォマティクス研究会2017年WS","本日の統合TVは、2017年2月24日にJST東京本部(サイエンスプラザ) 地下1階大会議室で開催された質量分析インフォマティクス研究会・第2回ワークショップ(2017年)〜質量分析研究に於ける情報処理の現在と今後〜から、バイオサイエンスデータベースセンター (NBDC) / ライフサイエンス統合データベースセンター (DBCLS) 箕輪 真理 による「オミクス・データと個人情報」をお送りします。約25分です。
講演要旨はこちらからご覧いただけます。
ワークショップの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,メタボローム,倫理","https://youtu.be/8ZmrOgbE5Yw","http://togotv.dbcls.jp/movie/170405MSbioinfo_04_minowa.mov","http://doi.org/10.7875/togotv.2017.035","http://togotv.dbcls.jp/images/20170405_0.jpg","170405MSbioinfo_04_minowa.mov","thumbnail/20170405_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1223","","togotv.2017.034","","20170404","MS/MSスペクトルクラスタリングの化合物構造推定への応用 @ 質量分析インフォマティクス研究会2017年WS","本日の統合TVは、2017年2月24日にJST東京本部(サイエンスプラザ) 地下1階大会議室で開催された質量分析インフォマティクス研究会・第2回ワークショップ(2017年)〜質量分析研究に於ける情報処理の現在と今後〜から、沖縄科学技術大学院大学・進化神経生物学ユニット 早川 英介 氏 による「MS/MSスペクトルクラスタリングの化合物構造推定への応用」をお送りします。約37分です。
講演要旨はこちらからご覧いただけます。
ワークショップの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,メタボローム","https://youtu.be/1s66RsztcAg","http://togotv.dbcls.jp/movie/170404MSbioinfo_03_hayakawa.mov","http://doi.org/10.7875/togotv.2017.034","http://togotv.dbcls.jp/images/20170404_0.jpg","170404MSbioinfo_03_hayakawa.mov","thumbnail/20170404_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1222","","togotv.2017.033","","20170403","CE-MSメタボロミクスにおけるバイオ/ケモ/質量分析インフォマティクス @ 質量分析インフォマティクス研究会2017年WS","本日の統合TVは、2017年2月24日にJST東京本部(サイエンスプラザ) 地下1階大会議室で開催された質量分析インフォマティクス研究会・第2回ワークショップ(2017年)〜質量分析研究に於ける情報処理の現在と今後〜から、ヒューマン・メタボローム・テクノロジーズ 山本 博之 氏 による「CE-MSメタボロミクスにおけるバイオ/ケモ/質量分析インフォマティクス」をお送りします。約42分です。
講演要旨はこちらからご覧いただけます。
ワークショップの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,メタボローム","https://youtu.be/7p8Lnc88AjU","http://togotv.dbcls.jp/movie/170403MSbioinfo_02_yamamoto.mov","http://doi.org/10.7875/togotv.2017.033","http://togotv.dbcls.jp/images/20170403_0.jpg","170403MSbioinfo_02_yamamoto.mov","thumbnail/20170403_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1221","","togotv.2017.032","","20170402","質量分析を用いたメタボロミクス研究に資する情報処理および化合物同定のための技術開発 @ 質量分析インフォマティクス研究会2017年WS","本日の統合TVは、2017年2月24日にJST東京本部(サイエンスプラザ) 地下1階大会議室で開催された質量分析インフォマティクス研究会・第2回ワークショップ(2017年)〜質量分析研究に於ける情報処理の現在と今後〜から、理化学研究所・環境資源科学研究センター・メタボローム情報研究チーム 津川 裕司 氏 による「質量分析を用いたメタボロミクス研究に資する情報処理および化合物同定のための技術開発」をお送りします。約42分です。
講演要旨はこちらからご覧いただけます。
ワークショップの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,メタボローム","https://youtu.be/HmKDhzhapNg","http://togotv.dbcls.jp/movie/170402MSbioinfo_01_tsugawa.mov","http://doi.org/10.7875/togotv.2017.032","http://togotv.dbcls.jp/images/20170402_0.jpg","170402MSbioinfo_01_tsugawa.mov","thumbnail/20170402_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1220","","togotv.2017.031","","20170401","Local BLAST の使い方〜導入・準備編(MacOSX版)〜 2017","今回の統合TVは、自分のコンピュータ(MacOSX)でBLAST検索を実行する方法を紹介します。現在、さまざまなデータベースに対してウェブ経由でBLAST検索を実行できます。しかしながら、実行速度が遅かったり、大量に検索すると怒られたり、自分の望むデータベースがなかったりする場合があります。また、まだ公開していない配列データに対してBLAST検索を実行したい場合もあるかもしれません。そんなときには、自分のコンピュータ(Local) にBLASTをインストールして、ローカルでBLAST検索を実行してしまいましょう!今回はその第一弾、”導入・準備編”BLASTプログラムのインストール方法やBLAST検索用のデータベース作成方法について紹介します。
","環境設定,アミノ酸,塩基配列,配列解析","https://youtu.be/1q5kNUoJRJ0","http://togotv.dbcls.jp/movie/170401LocalBlast_setup.mov","http://doi.org/10.7875/togotv.2017.031","http://togotv.dbcls.jp/images/20170401_0.jpg","170401LocalBlast_setup.mov","thumbnail/20170401_0.jpg","1. BLAST のダウンロードとインストール (0:43) ","2. BLAST のセットアップ (1:45) ","3. ウェブサイト経由でデータベースをダウンロードする (3:05) ","4. コマンドライン経由でデータベースをダウンロードする (4:28) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1219","","togotv.2017.030","","20170329","情報・システム研究機構の新時代に向けて @ ROISシンポジウム2016","本日の統合TVは、2017年2月20日に東京大学 伊藤謝恩ホールで開催された情報・システム研究機構(ROIS)シンポジウム「分野を超えたデータサイエンスの広がり~自然科学から人文社会科学まで~」から、情報・システム研究機構 理事 藤井 良一 氏 による「情報・システム研究機構の新時代に向けて」をお送りします。約16分です。
講演資料はこちらからご覧いただけます。
シンポジウムの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/wBjdfo0axLU","http://togotv.dbcls.jp/movie/170329ROISsympo2016_08_fujii.mov","http://doi.org/10.7875/togotv.2017.030","http://togotv.dbcls.jp/images/20170329_0.jpg","170329ROISsympo2016_08_fujii.mov","thumbnail/20170329_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1218","","togotv.2017.029","","20170328","異分野融合・新分野創成を担うデータサイエンティストの育成基盤 @ ROISシンポジウム2016","本日の統合TVは、2017年2月20日に東京大学 伊藤謝恩ホールで開催された情報・システム研究機構(ROIS)シンポジウム「分野を超えたデータサイエンスの広がり~自然科学から人文社会科学まで~」から、統計数理研究所 所長 樋口 知之 氏 による「異分野融合・新分野創成を担うデータサイエンティストの育成基盤」をお送りします。約10分です。
講演資料はこちらからご覧いただけます。
シンポジウムの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/C5IJkQWWvtY","http://togotv.dbcls.jp/movie/170328ROISsympo2016_07_higuchi.mov","http://doi.org/10.7875/togotv.2017.029","http://togotv.dbcls.jp/images/20170328_0.jpg","170328ROISsympo2016_07_higuchi.mov","thumbnail/20170328_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1217","","togotv.2017.028","","20170327","データサイエンス共同利用基盤施設における具体的取組みの紹介 @ ROISシンポジウム2016","本日の統合TVは、2017年2月20日に東京大学 伊藤謝恩ホールで開催された情報・システム研究機構(ROIS)シンポジウム「分野を超えたデータサイエンスの広がり~自然科学から人文社会科学まで~」から、「データサイエンス共同利用基盤施設における具体的取組みの紹介」をお送りします。約49分です。講演者は下記のとおりです。
- 小原 雄治 (ライフサイエンス統合データベースセンター センター長) 講演資料(PDF)
- 吉野 諒三 (社会データ構造化センター センター長) 講演資料(PDF)
- 北本 朝展 (人文学オープンデータ共同利用センター 準備室長) 講演資料(PDF)
- 野口 英樹 (ゲノムデータ解析支援センター センター長) 講演資料(PDF)
- 中野 慎也 (データ融合計算支援プロジェクト) 講演資料(PDF)
- 門倉 昭 (極域環境データサイエンスセンター 準備室長) 講演資料(PDF)
シンポジウムの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/6na0VwBybqM","http://togotv.dbcls.jp/movie/170327ROISsympo2016_06_DSall.mov","http://doi.org/10.7875/togotv.2017.028","http://togotv.dbcls.jp/images/20170327_0.jpg","170327ROISsympo2016_06_DSall.mov","thumbnail/20170327_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1216","","togotv.2017.027","","20170326","データサイエンス共同利用基盤施設の取組み @ ROISシンポジウム2016","本日の統合TVは、2017年2月20日に東京大学 伊藤謝恩ホールで開催された情報・システム研究機構(ROIS)シンポジウム「分野を超えたデータサイエンスの広がり~自然科学から人文社会科学まで~」から、情報・システム研究機構 データサイエンス共同利用基盤施設 施設長 藤山 秋佐夫 氏 による「データサイエンス共同利用基盤施設の取組み」をお送りします。約10分です。
講演資料はこちらからご覧いただけます。
シンポジウムの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/C2iTnAvPF2Q","http://togotv.dbcls.jp/movie/170326ROISsympo2016_05_fujiyama.mov","http://doi.org/10.7875/togotv.2017.027","http://togotv.dbcls.jp/images/20170326_0.jpg","170326ROISsympo2016_05_fujiyama.mov","thumbnail/20170326_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1215","","togotv.2017.026","","20170324","データは誰のものか @ ROISシンポジウム2016","本日の統合TVは、2017年2月20日に東京大学 伊藤謝恩ホールで開催された情報・システム研究機構(ROIS)シンポジウム「分野を超えたデータサイエンスの広がり~自然科学から人文社会科学まで~」から、人間文化研究機構 理事 佐藤 洋一郎 氏 による「データは誰のものか」をお送りします。約27分です。
講演資料はこちらからご覧いただけます。
シンポジウムの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/LB3BtrDMCoM","http://togotv.dbcls.jp/movie/170324ROISsympo2016_03_sato.mov","http://doi.org/10.7875/togotv.2017.026","http://togotv.dbcls.jp/images/20170324_0.jpg","170324ROISsympo2016_03_sato.mov","thumbnail/20170324_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1214","","togotv.2017.025","","20170323","大学におけるデータサイエンスとその教育 @ ROISシンポジウム2016","本日の統合TVは、2017年2月20日に東京大学 伊藤謝恩ホールで開催された情報・システム研究機構(ROIS)シンポジウム「分野を超えたデータサイエンスの広がり~自然科学から人文社会科学まで~」から、九州大学 理事・副学長 安浦 寛人 氏 による「大学におけるデータサイエンスとその教育」をお送りします。約26分です。
講演資料はこちらからご覧いただけます。
シンポジウムの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/fyoKzvi1L_4","http://togotv.dbcls.jp/movie/170323ROISsympo2016_02_yasuura.mov","http://doi.org/10.7875/togotv.2017.025","http://togotv.dbcls.jp/images/20170323_0.jpg","170323ROISsympo2016_02_yasuura.mov","thumbnail/20170323_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1213","","togotv.2017.024","","20170322","情報・システム研究機構のこれまでを振り返って @ ROISシンポジウム2016","本日の統合TVは、2017年2月20日に東京大学 伊藤謝恩ホールで開催された情報・システム研究機構(ROIS)シンポジウム「分野を超えたデータサイエンスの広がり~自然科学から人文社会科学まで~」から、情報・システム研究機構 機構長 北川 源四郎 氏 による「情報・システム研究機構のこれまでを振り返って」をお送りします。約20分です。
講演資料はこちらからご覧いただけます。
シンポジウムの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/bkDbEda1f68","http://togotv.dbcls.jp/movie/170322ROISsympo2016_01_kitagawa.mov","http://doi.org/10.7875/togotv.2017.024","http://togotv.dbcls.jp/images/20170322_0.jpg","170322ROISsympo2016_01_kitagawa.mov","thumbnail/20170322_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1212","","togotv.2017.023","","20170321","NCBI BLASTの使い方 〜基本編〜 2017","NCBI BLAST(えぬしーびーあいブラストと発音します)は、問い合わせ配列に類似した配列をデータベース中から検索するツールです。BLASTの名称はBasic Local Alignment Search Toolの頭文字に由来しており、配列解析には欠かせない、基本的なツールです。塩基配列を問い合わせ配列として、nr/ntデータベース(冗長性を排した塩基配列データベース)に対して検索を行い、機能を推定する使い方を説明します。もちろん、塩基配列だけではなく、アミノ酸配列に対しても使えます。","塩基配列,配列解析,NCBI,アミノ酸","https://youtu.be/pSmA0sfx_Mk","http://togotv.dbcls.jp/movie/170321_NCBI_BLAST.mov","http://doi.org/10.7875/togotv.2017.023","http://togotv.dbcls.jp/images/20170321_0.jpg","170321_NCBI_BLAST.mov","thumbnail/20170321_0.jpg","1. Nucleotide BLAST を実行する (1:28) ","2. BLAST検索の結果 (2:50) ","3. スコアの見方 (3:41) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1211","","togotv.2017.022","","20170320","Extending the interoperability of tagtog and PubAnnotation"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Juan Miguel Cejuela makes a presentation entitled ""Extending the interoperability of tagtog and PubAnnotation"". (8:04)
Here is the proposal of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/dBUHB_9fD_o","http://togotv.dbcls.jp/movie/170320BLAH3_17_juan.mov","http://doi.org/10.7875/togotv.2017.022","http://togotv.dbcls.jp/images/20170320_0.jpg","170320BLAH3_17_juan.mov","thumbnail/20170320_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1210","","togotv.2017.021","","20170319","Building a cost-effective gold standard set for enriching PubAnnotation"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Dongseop Kwon makes a presentation entitled ""Building a cost-effective gold standard set for enriching PubAnnotation"". (10:36)
Here are the slides of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/k8XPmmIumjM","http://togotv.dbcls.jp/movie/170319BLAH3_16_dongseop.mov","http://doi.org/10.7875/togotv.2017.021","http://togotv.dbcls.jp/images/20170319_0.jpg","170319BLAH3_16_dongseop.mov","thumbnail/20170319_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1209","","togotv.2017.020","","20170318","BioCreative 2017 PM task: finding mutations affecting protein interactions for precision medicine"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Zhiyong Lu makes a presentation entitled ""BioCreative 2017 PM task: finding mutations affecting protein interactions for precision medicine"". (10:40)
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/16hdMgRmitE","http://togotv.dbcls.jp/movie/170318BLAH3_15_zhiyong.mov","http://doi.org/10.7875/togotv.2017.020","http://togotv.dbcls.jp/images/20170318_0.jpg","170318BLAH3_15_zhiyong.mov","thumbnail/20170318_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1208","","togotv.2017.019","","20170317","Integrating PubTator in the curation pipeline of SourceData"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Lou Götz makes a presentation entitled ""Integrating PubTator in the curation pipeline of SourceData"". (8:17)
Here are the slides of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/pxoY-hIsx-Y","http://togotv.dbcls.jp/movie/170317BLAH3_14_lou.mov","http://doi.org/10.7875/togotv.2017.019","http://togotv.dbcls.jp/images/20170317_0.jpg","170317BLAH3_14_lou.mov","thumbnail/20170317_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1207","","togotv.2017.018","","20170316","Integrating biomedical data annotation in scientific publishing"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Thomas Lemberger makes a presentation entitled ""Integrating biomedical data annotation in scientific publishing"". (42:57)
Here are the slides of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/31pi_Xv99zc","http://togotv.dbcls.jp/movie/170316BLAH3_13_thomas.mov","http://doi.org/10.7875/togotv.2017.018","http://togotv.dbcls.jp/images/20170316_0.jpg","170316BLAH3_13_thomas.mov","thumbnail/20170316_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1206","","togotv.2017.017","","20170315","Annotating the SIRO model and discovering experimental protocols"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Olga Giraldo makes a presentation entitled ""Annotating the SIRO model and discovering experimental protocols"". (10:18)
Here is the proposal of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/I2BKaSRcJUM","http://togotv.dbcls.jp/movie/170315BLAH3_12_olga.mov","http://doi.org/10.7875/togotv.2017.017","http://togotv.dbcls.jp/images/20170315_0.jpg","170315BLAH3_12_olga.mov","thumbnail/20170315_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1205","","togotv.2017.016","","20170314","YBio M2CMT : a flexible bio-text mining tool for multi-component multi-target"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Min Song makes a presentation entitled "" YBio M2CMT : a flexible bio-text mining tool for multi-component multi-target"". (8:03)
Here is the proposal of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/t-k7v5CNPMY","http://togotv.dbcls.jp/movie/170314BLAH3_11_min.mov","http://doi.org/10.7875/togotv.2017.016","http://togotv.dbcls.jp/images/20170314_0.jpg","170314BLAH3_11_min.mov","thumbnail/20170314_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1204","","togotv.2017.015","","20170313","Data programming for PubAnnotation via Snorkel"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Juan Banda makes a presentation entitled ""Data programming for PubAnnotation via Snorkel"". (7:55)
Here are the slides of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/CZ0ztCf-iw4","http://togotv.dbcls.jp/movie/170313BLAH3_10_juan.mov","http://doi.org/10.7875/togotv.2017.015","http://togotv.dbcls.jp/images/20170313_0.jpg","170313BLAH3_10_juan.mov","thumbnail/20170313_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1203","","togotv.2017.014","","20170312","Linked Annotation Networks: Developing an Infrastructure for Inference"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Tiffany J. Callahan makes a presentation entitled ""Linked Annotation Networks: Developing an Infrastructure for Inference"". (9:01)
Here are the slides of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/Ev6UonS1mR8","http://togotv.dbcls.jp/movie/170312BLAH3_09_tiffany.mov","http://doi.org/10.7875/togotv.2017.014","http://togotv.dbcls.jp/images/20170312_0.jpg","170312BLAH3_09_tiffany.mov","thumbnail/20170312_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1202","","togotv.2017.013","","20170311","Scientific Paper Analysis: JST CREST Project on Big Data Application"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Yuji Matsumoto makes a presentation entitled ""Scientific Paper Analysis: JST CREST Project on Big Data Application"". (41:36)
Here are the slides of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/qDNFgCw6q9s","http://togotv.dbcls.jp/movie/170311BLAH3_08_yuji.mov","http://doi.org/10.7875/togotv.2017.013","http://togotv.dbcls.jp/images/20170311_0.jpg","170311BLAH3_08_yuji.mov","thumbnail/20170311_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1201","","togotv.2017.012","","20170310","The Noctua Modeling Tool"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Seth Carbon makes a presentation entitled ""The Noctua Modeling Tool"". (10:05)
Here are the slides of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/L7mlhVD8T9s","http://togotv.dbcls.jp/movie/170310BLAH3_07_seth.mov","http://doi.org/10.7875/togotv.2017.012","http://togotv.dbcls.jp/images/20170310_0.jpg","170310BLAH3_07_seth.mov","thumbnail/20170310_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1200","","togotv.2017.011","","20170309","Towards seamless format conversion between BioC and PubAnnotation for sharing PubMed/PubMed Central documents and annotations"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Sun Kim makes a presentation entitled ""Towards seamless format conversion between BioC and PubAnnotation for sharing PubMed/PubMed Central documents and annotations"". (11:32)
Here are the slides of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/zy4aoC60Bzk","http://togotv.dbcls.jp/movie/170309BLAH3_06_sun.mov","http://doi.org/10.7875/togotv.2017.011","http://togotv.dbcls.jp/images/20170309_0.jpg","170309BLAH3_06_sun.mov","thumbnail/20170309_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1199","","togotv.2017.010","","20170308","Customized automatic corpus annotations using AlvisNLP/ML"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Robert Bossy makes a presentation entitled ""Customized automatic corpus annotations using AlvisNLP/ML"". (9:54)
Here are the slides of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/eUiucApYRE8","http://togotv.dbcls.jp/movie/170308BLAH3_05_robert.mov","http://doi.org/10.7875/togotv.2017.010","http://togotv.dbcls.jp/images/20170308_0.jpg","170308BLAH3_05_robert.mov","thumbnail/20170308_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1198","","togotv.2017.009","","20170307","BioASQ and PubAnnotaion : Using linked annotations in biomedical question answering"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Anastasios Nentidis makes a presentation entitled ""BioASQ and PubAnnotaion : Using linked annotations in biomedical question answering"". (9:56)
Here are the slides of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/KN-fMUS2XE8","http://togotv.dbcls.jp/movie/170307BLAH3_04_anastatios.mov","http://doi.org/10.7875/togotv.2017.009","http://togotv.dbcls.jp/images/20170307_0.jpg","170307BLAH3_04_anastatios.mov","thumbnail/20170307_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1197","","togotv.2017.008","","20170306","An overview of the MiNCor: annotation guidelines and text corpora for MicroRNA mentions in the scientific literature"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Josè Camilla Sammartino makes a presentation entitled ""An overview of the MiNCor: annotation guidelines and text corpora for MicroRNA mentions in the scientific literature"". (7:57)
Here is the proposal of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/5OUzxwGvMok","http://togotv.dbcls.jp/movie/170306BLAH3_03_jose.mov","http://doi.org/10.7875/togotv.2017.008","http://togotv.dbcls.jp/images/20170306_0.jpg","170306BLAH3_03_jose.mov","thumbnail/20170306_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1196","","togotv.2017.007","","20170305","Text-mining-based retrieval of protein networks"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Lars Juhl Jensen makes a presentation entitled ""Text-mining-based retrieval of protein networks"". (8:21)
Here are the slides of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/07gj8vKslac","http://togotv.dbcls.jp/movie/170305BLAH3_02_lars.mov","http://doi.org/10.7875/togotv.2017.007","http://togotv.dbcls.jp/images/20170305_0.jpg","170305BLAH3_02_lars.mov","thumbnail/20170305_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1195","","togotv.2017.006","","20170304","Tying it all together - From terminology integration to annotation integration"," Biomedical Linked Annotation Hackathon (BLAH) 3 was held in National Institute of Informatics in Tokyo, Japan. On the first day of the Hackathon (16. Jan.), public symposium of the BLAH 3 was held.
In this talk, Olivier Bodenreider makes a presentation entitled ""Tying it all together - From terminology integration to annotation integration"". (56:57)
Here are the slides of this talk.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon","https://youtu.be/SWh10mvhJVo","http://togotv.dbcls.jp/movie/170304BLAH3_01_olivier.mov","http://doi.org/10.7875/togotv.2017.006","http://togotv.dbcls.jp/images/20170304_0.jpg","170304BLAH3_01_olivier.mov","thumbnail/20170304_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1194","","togotv.2017.005","","20170303","Allen Brain Atlasを使い倒す 〜基本編〜 2017","The Allen Mouse Brain Atlasとは、米国シアトルのAllen脳科学研究所が提供する、マウス脳を網羅する21000個以上の遺伝子発現を詳細に示した三次元マップを構築するためのデータベースです。 マウス脳を数十万個の切片にし、in situ hybridizationを行い、すべての遺伝子の発現パターンを細胞レベルまで示しています。 今回は、その基本的な検索、操作方法について説明します。","遺伝子,可視化,発現解析,画像,データベース","https://youtu.be/64n63tUJjBo","http://togotv.dbcls.jp/movie/170303_ABA.mov","http://doi.org/10.7875/togotv.2017.005","http://togotv.dbcls.jp/images/20170303_0.jpg","170303_ABA.mov","thumbnail/20170303_0.jpg","1. Gene Search (0:47) ","2. Differential Search (2:09) ","3. Fine Structure Search (2:57) ","4. Bulk Search (3:35) ","5. Human Differential Search (4:12) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1193","","togotv.2017.004","","20170223","MEGANを使って、メタゲノムデータを解析する","MEGANは、メタゲノム解析を網羅的に行うことができるソフトです。もともとはメタゲノムの生物種マッピング用のためのソフトでしたが、KEGGやSEEDを用いた機能予測やパスウェイ再構築の機能などが拡張されており、様々な系統・機能解析をマウス操作だけで簡単に行うことができます。今回は、MEGANのデモデータを使って基本的な操作を説明します。","配列解析,ゲノム,NGS,ソフトウェア,KEGG,微生物,パスウェイ解析,メタゲノム,系統樹","https://youtu.be/FpFHTg6qUYQ","http://togotv.dbcls.jp/movie/170223_MEGAN.mov","http://doi.org/10.7875/togotv.2017.004","http://togotv.dbcls.jp/images/20170223_0.jpg","170223_MEGAN.mov","thumbnail/20170223_0.jpg","1. MEGANのダウンロード (0:32) ","2. サンプルデータのアップロード (1:35) ","3. 単一サンプルの解析 (4:39) ","4. 複数サンプルの比較 (8:11) ","5. 解析結果の保存 (10:00) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1192","","togotv.2017.003","","20170213","OMIMを使い倒す 家族性乳がんの関連遺伝子をさぐる 2017","OMIM(Online Mendelian Inheritance in Man)は、ヒトの遺伝性疾患に関するデータベースです。今回は、ヒトの乳がんの約5パーセントを占める、遺伝的要素の強い家族性乳がんを例に、その使い方を紹介します。
家族性乳がんのリスク因子として、がん抑制遺伝子である BRCA1/2 遺伝子の変異が知られています。この変異を持っていると、持っていない場合より遺伝性の乳がんを発症する可能性が高まりますが、変異があれば必ず乳がんになる訳ではなく、遺伝性を疑われる乳がんを発症した人全てでこの変異が見つかる訳でもありません。ところで、乳がんの発症に関与する他の遺伝子や、他に BRCA1/2 遺伝子が関与している疾患はないのでしょうか。それらをデータベースを用いて知る一つの方法は,例えば、ある疾患のページでどのような遺伝子が引用されているかを見ていくことです。Molecular Genetics という項目をつぶさに眺めれば、それらの関係を読み取る事ができるでしょう。あるいは、疾患のページからClinical Synopsisというページで概略を掴む事もできます。また、大まかな傾向を掴みたいだけなら、もう一つの方法もあります。OMIMデータベースには大きく分けて疾患の情報と、その原因やリスク因子である遺伝子の情報の二種類が収録されていますが、この二つはID番号の違いや、検索オプションを用いると、疾患の情報と遺伝子の情報とに分けられます。つまり、疾患について言及している遺伝子や、遺伝子について言及している疾患のページを一覧できるのです。特定の遺伝子について興味があるが、その遺伝子がどのような疾患や表現型に関与しているかを知りたい場合に、この機能が役に立つかもしれません。 ","疾患情報,データベース","https://youtu.be/eC2cfQjGFtA","http://togotv.dbcls.jp/movie/170213_OMIM.mov","http://doi.org/10.7875/togotv.2017.003","http://togotv.dbcls.jp/images/20170213_0.jpg","170213_OMIM.mov","thumbnail/20170213_0.jpg","1. 乳がんで検索 (0:49) ","2. OMIMのデータはIDと疾患と遺伝子を簡単に見分けられる (1:55) ","3. OMIMの各エントリの見かた (2:28) ","4. キーワード検索と絞込機能を用いた検索の活用法 (4:27) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1191","","togotv.2017.002","","20170102","NCBI GEOの使い方1 〜マイクロアレイデータの検索・取得〜2017","NCBI GEO(Gene Expression Omnibus; 「ジオ」あるいは「ゲオ」と発音します)はNCBIが提供・維持管理している遺伝子発現情報のデータベースです。GEOには、主にマイクロアレイ実験で得られたデータが日々蓄積されており、その登録データ数は世界最大です。それらの中から、自分の興味のある発現データセットや遺伝子プロファイルを検索することができるだけでなく、それらの生データを自由にダウンロードすることが可能です。
今回は、目的のマイクロアレイ実験データセットを検索し生データをダウンロードする方法および、プラットフォームの登録実験数が多すぎるときの対処法について説明しています。","発現解析,NCBI,GEO","https://youtu.be/aOCYRQzrjOY","http://togotv.dbcls.jp/movie/170102_GEO1.mov","http://doi.org/10.7875/togotv.2017.002","http://togotv.dbcls.jp/images/20170102_0.jpg","170102_GEO1.mov","thumbnail/20170102_0.jpg","1. 検索〜全データダウンロード (0:32) ","2. 1サンプルのデータダウンロード (3:15) ","3. 登録実験数が極端に多い場合(4:19) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1190","","togotv.2017.001","","20170101","生命科学系ウェブツール活用サイト「統合TV」の使い方","『統合TV』は、生命科学分野の有用なデータベースやツールの使い方を動画で紹介するウェブサイトです。DBCLSでは、利用者が必要とするDBやWebツールに容易にアクセスし利用できるようにするために、「どこにどのようなDBやWebツールが存在し、それらはどのように活用できるのか」についての情報を提供しており、「統合TV」はその代表的なコンテンツの一つです。2007年7月のサービス開始以来,合計1189本(2016年末現在)の動画を無償で公開しています。
本動画では、2016年にリニューアルされた統合TVウェブサイトの使い方や、新機能について紹介します。","DBCLS,情報収集,データベース","https://youtu.be/SQclITQNdks","http://togotv.dbcls.jp/movie/170101_togotv.mov","http://doi.org/10.7875/togotv.2017.001","http://togotv.dbcls.jp/images/20170101_0.jpg","170101_togotv.mov","thumbnail/20170101_0.jpg","1. 動画を検索し視聴する (0:48) ","2. 「目的別検索」 (2:46) ","3. 「タグ検索」 (3:20) ","4. 「AJACS講習会資料」 (3:40) ","5. 「新着論文レビュー」の記事へのリンク (4:23) ","6. 「自由に使える画像を探す」 (5:00) ","7. コンテンツ作成のリクエスト (6:36) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1189","","togotv.2016.179","","20161225","ゲノム情報から花の匂いの多様化メカニズムを探る @ NIGJOINT2016"," 本日の統合TVは、2016年12月15-16日(木・金)に行われた2016年度 国立遺伝学研究所 研究会 次世代モデル生物におけるゲノム情報利用ワークショップ から 国立科学博物館植物研究部多様性解析・保全グループ 奥山 雄大 研究員 による「ゲノム情報から花の匂いの多様化メカニズムを探る」をお送りします。 約31分です。
研究会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演, ゲノム","https://youtu.be/I4Zw_T7YhbQ","http://togotv.dbcls.jp/movie/161225_NIGJOINT_06_okuyama.mov","http://doi.org/10.7875/togotv.2016.179","http://togotv.dbcls.jp/images/20161225_0.jpg","","thumbnail/20161225_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1188","","togotv.2016.178","","20161224","昆虫研究におけるゲノム情報の利用(私の研究の歴史を例に) @ NIGJOINT2016"," 本日の統合TVは、2016年12月15-16日(木・金)に行われた2016年度 国立遺伝学研究所 研究会 次世代モデル生物におけるゲノム情報利用ワークショップ から 農研機構 生物機能利用研究部門 遺伝子利用基盤研究領域 先進昆虫ゲノム改変ユニット 横井 翔 研究員 による「昆虫研究におけるゲノム情報の利用(私の研究の歴史を例に)」をお送りします。 約34分です。
研究会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演, ゲノム","https://youtu.be/xHiZsy4cywU","http://togotv.dbcls.jp/movie/161224_NIGJOINT_05_yokoi.mov","http://doi.org/10.7875/togotv.2016.178","http://togotv.dbcls.jp/images/20161224_0.jpg","161224_NIGJOINT_05_yokoi.mov","thumbnail/20161224_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1187","","togotv.2016.177","","20161223","非モデル生物研究のための公共NGSデータベースSRAの利活用:その検索と登録 @ NIGJOINT2016"," 本日の統合TVは、2016年12月15-16日(木・金)に行われた2016年度 国立遺伝学研究所 研究会 次世代モデル生物におけるゲノム情報利用ワークショップ から ライフサイエンス統合データベースセンター 仲里 猛留 による「非モデル生物研究のための公共NGSデータベースSRAの利活用:その検索と登録」をお送りします。 約54分です。
研究会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演, NGS, データベース","https://youtu.be/aevji5-thvw","http://togotv.dbcls.jp/movie/161223_NIGJOINT_04_nakazato.mov","http://doi.org/10.7875/togotv.2016.177","http://togotv.dbcls.jp/images/20161223_0.jpg","161223_NIGJOINT_04_nakazato.mov","thumbnail/20161223_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1186","","togotv.2016.176","","20161222","旧世代モデル生物で培われた機能アノテーション法~次世代モデル生物への応用に向けて @ NIGJOINT2016"," 本日の統合TVは、2016年12月15-16日(木・金)に行われた2016年度 国立遺伝学研究所 研究会 次世代モデル生物におけるゲノム情報利用ワークショップ から 理化学研究所 ライフサイエンス技術基盤研究センター 大容量データ管理技術開発ユニット 粕川 雄也 ユニットリーダー による「旧世代モデル生物で培われた機能アノテーション法~次世代モデル生物への応用に向けて」をお送りします。 約35分です。
研究会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演, ゲノム, FANTOM","https://youtu.be/5xmlc96Iolgj","http://togotv.dbcls.jp/movie/161222_NIGJOINT_03_kasukawa.mov","http://doi.org/10.7875/togotv.2016.176","http://togotv.dbcls.jp/images/20161222_0.jpg","161222_NIGJOINT_03_kasukawa.mov","thumbnail/20161222_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1185","","togotv.2016.175","","20161221","農林業を支える植物のゲノミクス @ NIGJOINT2016"," 本日の統合TVは、2016年12月15-16日(木・金)に行われた2016年度 国立遺伝学研究所 研究会 次世代モデル生物におけるゲノム情報利用ワークショップ から 東京大学大学院農学生命科学研究科 生産・環境生物学専攻 生物測定学研究室 鐘ケ江 弘美 特任研究員 による「農林業を支える植物のゲノミクス」をお送りします。 約35分です。
研究会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演, ゲノム","https://youtu.be/fpgHlYCanBc","http://togotv.dbcls.jp/movie/161221_NIGJOINT_02_kanegae.mov","http://doi.org/10.7875/togotv.2016.175","http://togotv.dbcls.jp/images/20161221_0.jpg","161221_NIGJOINT_02_kanegae.mov","thumbnail/20161221_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1184","","togotv.2016.174","","20161220","次世代モデル生物におけるゲノム情報利用ワークショップ(NIGJOINT2016) 趣旨説明"," 本日の統合TVは、2016年12月15-16日(木・金)に行われた2016年度 国立遺伝学研究所 研究会 次世代モデル生物におけるゲノム情報利用ワークショップ から ライフサイエンス統合データベースセンター 坊農 秀雅 による「次世代モデル生物におけるゲノム情報利用ワークショップ 趣旨説明」をお送りします。 約18分です。
研究会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演, ゲノム","https://youtu.be/gfaciovKMgk","http://togotv.dbcls.jp/movie/161220_NIGJOINT_01_bono.mov","http://doi.org/10.7875/togotv.2016.174","http://togotv.dbcls.jp/images/20161220_0.jpg","161220_NIGJOINT_01_bono.mov","thumbnail/20161220_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1183","","togotv.2016.173","","20161120","【トーゴーの日シンポジウム2016】生命科学分野における質問応答システムの実現に向けて"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、 金 進東 特任准教授 による成果報告⑪「生命科学分野における質問応答システムの実現に向けて」をお送りします。約16分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日","https://youtu.be/9uh2vNyOlw4","http://togotv.dbcls.jp/movie/161120togo2016_17_kim.mov","http://doi.org/10.7875/togotv.2016.173","http://togotv.dbcls.jp/images/20161120_0.jpg","161120togo2016_17_kim.mov","thumbnail/20161120_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1182","","togotv.2016.172","","20161119","【トーゴーの日シンポジウム2016】学術情報と社会をつなぐ代謝物と生物種のデータベース"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、理化学研究所 環境資源科学研究センター 有田 正規 チームリーダーによる成果報告⑩「学術情報と社会をつなぐ代謝物と生物種のデータベース」をお送りします。約22分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,メタボローム","https://youtu.be/Orb2btCZDJg","http://togotv.dbcls.jp/movie/161119togo2016_16_arita.mov","http://doi.org/10.7875/togotv.2016.172","http://togotv.dbcls.jp/images/20161119_0.jpg","161119togo2016_16_arita.mov","thumbnail/20161119_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1181","","togotv.2016.171","","20161118","【トーゴーの日シンポジウム2016】生物の表現型が研究コミュニティをつなぐ"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、理化学研究所 バイオリソースセンター 桝屋 啓志 ユニットリーダーによる成果報告⑨「生物の表現型が研究コミュニティをつなぐ」をお送りします。約18分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日","https://youtu.be/vIkIbNcMkTg","http://togotv.dbcls.jp/movie/161118togo2016_15_masuya.mov","http://doi.org/10.7875/togotv.2016.171","http://togotv.dbcls.jp/images/20161118_0.jpg","161118togo2016_15_masuya.mov","thumbnail/20161118_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"","","保留","","","【トーゴーの日シンポジウム2016】データベース作りとデータ駆動科学"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、東京大学大学院新領域創成科学研究科 岡田 真人 教授による招待講演②「データベース作りとデータ駆動科学」をお送りします。約36分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日","https://youtu.be/5J7EKD0v4FI","http://togotv.dbcls.jp/movie/161117togo2016_14_okada.mov","http://doi.org/10.7875/togotv.2016.170","http://togotv.dbcls.jp/images/20161117_0.jpg","161117togo2016_14_okada.mov","thumbnail/20161117_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1179","","togotv.2016.169","","20161116","【トーゴーの日シンポジウム2016】公共ChIPデータを活用した遺伝子制御ネットワーク構築と転写因子予測"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、理化学研究所 医科学イノベーションハブ推進プログラム 川上 英良 上級研究員によるユーザー発表④「公共ChIPデータを活用した遺伝子制御ネットワーク構築と転写因子予測」をお送りします。約14分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,ChIP-seq,パスウェイ解析,転写因子","https://youtu.be/-EJbsw0ccLk","http://togotv.dbcls.jp/movie/161116togo2016_13_kawakami.mov","http://doi.org/10.7875/togotv.2016.169","http://togotv.dbcls.jp/images/20161116_0.jpg","161116togo2016_13_kawakami.mov","thumbnail/20161116_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1178","","togotv.2016.168","","20161115","【トーゴーの日シンポジウム2016】統合データベースを活用した肝・胆道系の難治性疾患 “原発性胆汁性胆管炎” の疾患関連遺伝子解析"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、長崎大学 大学院医歯薬学総合研究科 中村 稔 教授によるユーザー発表③「統合データベースを活用した肝・胆道系の難治性疾患 “原発性胆汁性胆管炎” の疾患関連遺伝子解析」をお送りします。約15分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,疾患情報,遺伝子","https://youtu.be/ewnW1M1ChCM","http://togotv.dbcls.jp/movie/161115togo2016_12_nakamura.mov","http://doi.org/10.7875/togotv.2016.168","http://togotv.dbcls.jp/images/20161115_0.jpg","161115togo2016_12_nakamura.mov","thumbnail/20161115_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1177","","togotv.2016.167","","20161114","【トーゴーの日シンポジウム2016】糖鎖関連データベースのセマンティックウェブ対応と連携強化"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、産業技術総合研究所 創薬基盤研究部門 成松 久 総括研究主幹による成果報告⑧「糖鎖関連データベースのセマンティックウェブ対応と連携強化」をお送りします。約21分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日","https://youtu.be/V3mDTE-LJN8","http://togotv.dbcls.jp/movie/161114togo2016_11_narimatsu.mov","http://doi.org/10.7875/togotv.2016.167","http://togotv.dbcls.jp/images/20161114_0.jpg","161114togo2016_11_narimatsu.mov","thumbnail/20161114_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1176","","togotv.2016.166","","20161113","【トーゴーの日シンポジウム2016】PGDBj:幅広い用途に向けた植物ゲノム情報ポータルサイト"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、かずさDNA研究所 田畑 哲之 所長による成果報告⑦「PGDBj:幅広い用途に向けた植物ゲノム情報ポータルサイト」をお送りします。約20分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,植物,ゲノム","https://youtu.be/2tk7Rijf1KY","http://togotv.dbcls.jp/movie/161113togo2016_10_tabata.mov","http://doi.org/10.7875/togotv.2016.166","http://togotv.dbcls.jp/images/20161113_0.jpg","161113togo2016_10_tabata.mov","thumbnail/20161113_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1175","","togotv.2016.165","","20161112","【トーゴーの日シンポジウム2016】ゲノム・メタゲノム情報統合による微生物DBの超高度化推進"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、国立遺伝学研究所 黒川 顕 教授による成果報告⑥「ゲノム・メタゲノム情報統合による微生物DBの超高度化推進」をお送りします。約14分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,メタゲノム,ゲノム,データベース","https://youtu.be/l3MrvGpNemU","http://togotv.dbcls.jp/movie/161112togo2016_09_kurokawa.mov","http://doi.org/10.7875/togotv.2016.165","http://togotv.dbcls.jp/images/20161112_0.jpg","161112togo2016_09_kurokawa.mov","thumbnail/20161112_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1174","","togotv.2016.164","","20161111","【トーゴーの日シンポジウム2016】NBDC RDFポータルが目指す、次世代データ統合利用基盤"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、ライフサイエンス統合データベースセンター 川島 秀一 特任助教による成果報告⑤「NBDC RDFポータルが目指す、次世代データ統合利用基盤」をお送りします。約20分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,NBDC,RDF,データベース","https://youtu.be/4dqsMccYla4","http://togotv.dbcls.jp/movie/161111togo2016_08_kawashima.mov","http://doi.org/10.7875/togotv.2016.164","http://togotv.dbcls.jp/images/20161111_0.jpg","161111togo2016_08_kawashima.mov","thumbnail/20161111_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1173","","togotv.2016.163","","20161110","【トーゴーの日シンポジウム2016】疾患ヒトゲノム変異の生物学的機能注釈を目指した多階層オミクスデータの統合"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、東京大学大学院医学系研究科 菅野 純夫 教授による成果報告④「疾患ヒトゲノム変異の生物学的機能注釈を目指した多階層オミクスデータの統合」をお送りします。約17分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,疾患情報, ゲノム","https://youtu.be/VZa0lw_3Zks","http://togotv.dbcls.jp/movie/161110togo2016_07_sugano.mov","http://doi.org/10.7875/togotv.2016.163","http://togotv.dbcls.jp/images/20161110_0.jpg","161110togo2016_07_sugano.mov","thumbnail/20161110_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1172","","togotv.2016.162","","20161109","【トーゴーの日シンポジウム2016】個別化医療に向けたヒトゲノムバリエーションデータベース"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、東京大学大学院医学系研究科 徳永 勝士 教授による成果報告③「個別化医療に向けたヒトゲノムバリエーションデータベース」をお送りします。約17分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,疾患情報,ゲノム,多型","https://youtu.be/J4RsmDaYK9s","http://togotv.dbcls.jp/movie/161109togo2016_06_tokunaga.mov","http://doi.org/10.7875/togotv.2016.162","http://togotv.dbcls.jp/images/20161109_0.jpg","161109togo2016_06_tokunaga.mov","thumbnail/20161109_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1171","","togotv.2016.161","","20161108","【トーゴーの日シンポジウム2016】日本人ゲノムデータベースの臨床ゲノム解析における利用"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、徳島大学大学院医歯薬学研究部 成戸 卓也 助教 によるユーザー発表②「日本人ゲノムデータベースの臨床ゲノム解析における利用」をお送りします。約13分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,ゲノム,疾患情報,データベース","https://youtu.be/O4vLT7a0EKY","http://togotv.dbcls.jp/movie/161108togo2016_05_naruto.mov","http://doi.org/10.7875/togotv.2016.161","http://togotv.dbcls.jp/images/20161108_0.jpg","161108togo2016_05_naruto.mov","thumbnail/20161108_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1170","","togotv.2016.160","","20161107","【トーゴーの日シンポジウム2016】KNApSAcKデータベースを用いた昆虫・植物間化学的相互作用解析"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、東京工業大学生命理工学院 小寺 正明 講師 によるユーザー発表①「KNApSAcKデータベースを用いた昆虫・植物間化学的相互作用解析」をお送りします。約14分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,植物,メタボローム","https://youtu.be/fPFx_2aJhHw","http://togotv.dbcls.jp/movie/161107togo2016_04_kotera.mov","http://doi.org/10.7875/togotv.2016.160","http://togotv.dbcls.jp/images/20161107_0.jpg","161107togo2016_04_kotera.mov","thumbnail/20161107_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1169","","togotv.2016.159","","20161106","【トーゴーの日シンポジウム2016】がんのゲノム医療実装に向けた現状と課題:統合データベースへの期待"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、国立がん研究センター 中釜 斉 理事長 による 招待講演「がんのゲノム医療実装に向けた現状と課題:統合データベースへの期待」をお送りします。約35分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,疾患情報,ゲノム","https://youtu.be/0WyGxzcLCSM","http://togotv.dbcls.jp/movie/161106togo2016_03_nakagama.mov","http://doi.org/10.7875/togotv.2016.159","http://togotv.dbcls.jp/images/20161106_0.jpg","161106togo2016_03_nakagama.mov","thumbnail/20161106_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1168","","togotv.2016.158","","20161105","【トーゴーの日シンポジウム2016】ゲノム・疾患・医薬品のネットワーク解析"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、京都大学化学研究所 金久 實 特任教授 による成果報告②「ゲノム・疾患・医薬品のネットワーク解析」をお送りします。約20分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,ゲノム,疾患情報","https://youtu.be/aJht-weRTIU","http://togotv.dbcls.jp/movie/161105togo2016_02_kanehisa.mov","http://doi.org/10.7875/togotv.2016.158","http://togotv.dbcls.jp/images/20161105_0.jpg","161105togo2016_02_kanehisa.mov","thumbnail/20161105_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1167","","togotv.2016.157","","20161104","【トーゴーの日シンポジウム2016】生命科学におけるデータサイエンスの課題とPDB"," 本日の統合TVは、2016年10月5-6日に開催されたトーゴーの日シンポジウム2016 ~統合データベース、実りの時へ~ から、大阪大学 蛋白質研究所 中村 春木 所長 による成果報告①「生命科学におけるデータサイエンスの課題とPDB」をお送りします。約18分です。
講演要旨はこちらです。
本シンポジウムの一連の動画は、YouTubeの再生リストからもご覧いただけます。","講演, トーゴーの日,PDB,PDBj,タンパク質","https://youtu.be/IvrsByj8k00","http://togotv.dbcls.jp/movie/161104togo2016_01_nakamura.mov","http://doi.org/10.7875/togotv.2016.157","http://togotv.dbcls.jp/images/20161104_0.jpg","161104togo2016_01_nakamura.mov","thumbnail/20161104_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1166","","togotv.2016.156","","20161103","【遺伝研公開講演会2016】大学院生から見た遺伝研での研究生活","本日の統合TVは、2016年10月29日に開催された国立遺伝学研究所公開講演会2016から、国立遺伝学研究所 遺伝情報分析研究室 飯塚 朋代 氏 による「大学院生から見た遺伝研での研究生活」をお送りします。約9分です。
講演会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/GB9Xs05hZNY","http://togotv.dbcls.jp/movie/161103NIG_03_iizuka.mov","http://doi.org/10.7875/togotv.2016.156","http://togotv.dbcls.jp/images/20161103_0.jpg","161103NIG_03_iizuka.mov","thumbnail/20161103_0.jpg","1. 自己紹介〜 (0:00:35)","2. 今日の内容、遺伝研ならではの研究ライフ〜 (0:01:18)","3. NIGポスター交流会〜 (0:02:44)","4. 総研大プログレスレポート〜 (0:3:39)","5. 教員、研究員による研究交流セミナー〜 (0:5:00)","6. 輪読サークル〜 (0:6:00)","7. その他イベント盛りだくさん〜 (0:6:51)","8. 遺伝研を選ぶワケ〜 (0:7:39)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1165","","togotv.2016.155","","20161102","【遺伝研公開講演会2016】バイオインフォマティクスと未来社会","本日の統合TVは、2016年10月29日に開催された国立遺伝学研究所公開講演会2016から、国立遺伝学研究所 生命情報研究センター ゲノム進化研究室 黒川 顕 教授 による「バイオインフォマティクスと未来社会」をお送りします。約36分です。
「細菌は、海洋や土壌さらにはヒトの腸内など、地球上のあらゆる環境に存在し、地球環境における物質循環の根幹を形成しています。 それら細菌由来の膨大な遺伝子で満たされた環境は、巨大な「遺伝子プール」と言われています。我々はこの環境中の遺伝子プールを徹底的に解読、デジタル化し、スーパーコンピュータを駆使することで環境と細菌との関係性を明らかにしようとしています。 講演では、この研究を通して見えてきた未来社会に関してお話しします。」
講演会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/sewC4y9TsI8","http://togotv.dbcls.jp/movie/161102NIG_02_kurokawa.mov","http://doi.org/10.7875/togotv.2016.155","http://togotv.dbcls.jp/images/20161102_0.jpg","161102NIG_02_kurokawa.mov","thumbnail/20161102_0.jpg","1. バクテリアはどこにいる?〜 (0:02:57)","2. ほとんどのバクテリアは何をやっているのかわからない。なぜか?〜 (0:04:15)","3. 培養せずに群集まるごとゲノム解析(メタゲノム解析)〜 (0:05:22)","4. メタゲノム研究の推移〜 (0:10:51)","5. ヒト腸内メタゲノムプロジェクトのはじまり〜 (0:11:25)","6. 土壌汚染による土壌細菌群集の変動解析〜 (0:18:04)","7. メタゲノムデータの蓄積〜 (0:25:55)","8. ゲノム情報、異分野融合、イノベーション〜 (0:30:07)","9. 若手へのメッセージ〜 (0:35:04)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1164","","togotv.2016.154","","20161101","【遺伝研公開講演会2016】細胞を見れば分かる! 植物の不思議","本日の統合TVは、2016年10月29日に開催された国立遺伝学研究所公開講演会2016から、国立遺伝学研究所 細胞空間制御研究室 小田 祥久 准教授 による「植物を見れば分かる! 植物の不思議」をお送りします。約22分です。
「野菜や果物、青々と茂る木々など、私たちの生活に欠かすことのできない植物はなぜこんなにも瑞々しく育つことができるのでしょうか? 植物の細胞を詳しく見るとその答えが分かってきます。 植物の細胞は実に沢山の水を運び、蓄える巧妙な仕組みを備えています。植物細胞の最新の研究成果をご紹介します。」
講演会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/kDTt_9zf5XE","http://togotv.dbcls.jp/movie/161101NIG_01_oda.mov","http://doi.org/10.7875/togotv.2016.154","http://togotv.dbcls.jp/images/20161101_0.jpg","161101NIG_01_oda.mov","thumbnail/20161101_0.jpg","1. 細胞を顕微鏡で観察すると?〜 (0:00:35)","2. 液胞を見てみよう!〜 (0:04:00)","3. 植物細胞の形はどのようにして生まれるのか?微小管の重要性〜 (0:07:45)","4. 道管の役割、形成過程〜 (0:13:03)","5. 道管の種類〜 (0:14:20)","6. 道管を作る微小管〜 (0:17:29)","7. 表層微小管を壊すタンパク質を発見〜 (0:19:09)","8. 壁孔で働く3つの遺伝子を発見〜 (0:20:25)","9. 遺伝子操作で道管を作る〜 (0:21:17)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1163","","togotv.2016.153","","20161025","【NGSハンズオン2016】第3部 NGS解析 (中~上級) - トランスクリプトームアセンブリ、発現量推定","本日の統合TVは、2016年7月19日(火) ~ 8月4日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 平成28年度 次世代シークエンサ(NGS)ハンズオン講習会 から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「第3部 NGS解析 (中~上級) (農学生命情報科学特論II) トランスクリプトームアセンブリ、発現量推定」をお送りします。約5時間57分です。
本講習では、主に
・de novoトランスクリプトームアセンブリ(TrinityとBridger)
・前処理(アダプター除去やトリミング)との組合せによる性能比較
・発現量推定(TIGAR2)
をハンズオン形式で学びます。
講義資料 (PDF: 約9.7MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,NGS速習・ハンズオン,Linux,R,配列解析,発現解析","https://youtu.be/McgkTkpJ0Qs","http://togotv.dbcls.jp/movie/161025NGS_11_kadota.mov","http://doi.org/10.7875/togotv.2016.153","http://togotv.dbcls.jp/images/20161025_0.jpg","161025NGS_11_kadota.mov","thumbnail/20161025_0.jpg","1. 乳酸菌RNA-seqデータ解析のおさらいと問題設定(0:09:46)","2. de novoトランスクリプトームアセンブリ~事前準備~(0:12:57)","3. de novoトランスクリプトームアセンブリ~FastQC~(0:17:35)","4. de novoトランスクリプトームアセンブリ~Rockhopper2おさらい~(0:23:06)","5. de novoトランスクリプトームアセンブリ~情報抽出~(0:49:19)","6. de novoトランスクリプトームアセンブリ~様々なトリム条件でRockhopper2を実行(トリミング)~(0:59:18)","7. de novoトランスクリプトームアセンブリ~様々なトリム条件でRockhopper2を実行(fastx-trimmer–f–l)~(1:09:49)","8. de novoトランスクリプトームアセンブリ~様々なトリム条件でRockhopper2を実行(様々なトリム条件)~(1:29:43)","9. de novoトランスクリプトームアセンブリ~様々なトリム条件でRockhopper2を実行(様々な基準でアセンブリ結果を評価)~(2:16:53)","10. de novoトランスクリプトームアセンブリ~様々なトリム条件でRockhopper2を実行(ベストな条件でpaired-endアセンブリを実行)~(2:34:05)","11. de novoトランスクリプトームアセンブリ~Trinity(解凍)~(2:55:56)","12. de novoトランスクリプトームアセンブリ~Trinity(インストール)~(3:05:08)","13. de novoトランスクリプトームアセンブリ~Trinity(実行方法を調べてパスを通す)~(3:18:22)","14. de novoトランスクリプトームアセンブリ~Trinity(色々試しながら実行)~(3:33:55)","15. de novoトランスクリプトームアセンブリ~Trinity(apt-get)~(4:24:47)","16. de novoトランスクリプトームアセンブリ~Bridger~(4:28:32)","17. 発現量推定~TIGAR2のダウンロード、解凍、動作確認~(4:43:34)","18. 発現量推定~推奨パイプラインに従って実行~(4:55:04)","19. 発現量推定~結果の解釈、FPKM (RPKM)値を手計算~(5:24:35)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1162","","togotv.2016.152","","20161024","【NGSハンズオン2016】第3部 NGS解析 (中~上級) - クラウド環境との連携、ロングリードデータの解析"," 本日の統合TVは、2016年7月19日(火) ~ 8月4日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 平成28年度 次世代シークエンサ(NGS)ハンズオン講習会 から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「第3部 NGS解析 (中~上級) (農学生命情報科学特論II) クラウド環境との連携、ロングリードデータの解析」をお送りします。約5時間54分です。
本講習では、主に
・NGS連載第6回(残り)、ゲノムサイズ推定(KmerGenie)
・配列長によるフィルタリング(Pythonプログラム実行と改変)
・DDBJ Pipeline (VelvetとPlatanus;エアーハンズオン)
・ロングリード(PacBio)データと公共DB
・ファイル形式(sra, FASTQ, bax.h5)、SRA Toolkit、FastQC
・DDBJ Pipeline (HGAP;エアーハンズオン)
をハンズオン形式で学びます。
講義資料 (PDF: 約10.3MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,NGS速習・ハンズオン,Linux,R,配列解析","https://youtu.be/F_hQ2jouTEQ","http://togotv.dbcls.jp/movie/161024NGS_10_kadota.mov","http://doi.org/10.7875/togotv.2016.152","http://togotv.dbcls.jp/images/20161024_0.jpg","161024NGS_10_kadota.mov","thumbnail/20161024_0.jpg","1. W11:ゲノムサイズ推定(KmerGenieのインストールと利用)~インストール~(0:06:25)","2. W11:ゲノムサイズ推定(KmerGenieのインストールと利用)~single-endで実行(結果の解説)~(0:56:44)","3. W11:ゲノムサイズ推定(KmerGenieのインストールと利用)~paired-endで実行(結果の解説)~(1:36:05)","4. W12:配列長によるフィルタリング(Pythonプログラムの利用)(2:00:37)","5. DDBJ Pipeline(W13からW17まではほぼ省略)~W18:k=131でのVelvet実行結果の解析~(3:30:00)","6. DDBJ Pipeline(W13からW17まではほぼ省略)~W19:Platanusの実行、W20:結果の解析~(3:52:18)","7. DDBJ Pipeline(W13からW17まではほぼ省略)~W21:ACGTカウント(塩基ごとの出現頻度解析)~(4:17:15)","8. ロングリード(PacBio)データと公共DB~W2:PacBio生データはbax.h5形式、公共DBはsra形式とFASTQ形式~(4:19:18)","9. ロングリード(PacBio)データと公共DB~W3:公共DB (DRA)のFASTQファイルを入力としてFastQC~(4:45:42)","10. ロングリード(PacBio)データと公共DB~W4:NCBI SRA (SRA)が提供するSRA Toolkitのインストール~(5:01:09)","11. ロングリード(PacBio)データと公共DB~W5:利用(.sra→.fastqへの変換)、W6:FastQC~(5:26:07)","12. DDBJ PipelineでHGAPを実行(5:37:41)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1161","","togotv.2016.151","","20161023","【NGSハンズオン2016】第3部 NGS解析 (中~上級) - Linux環境でのデータ解析:マッピング、トリミング、アセンブリ"," 本日の統合TVは、2016年7月19日(火) ~ 8月4日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 平成28年度 次世代シークエンサ(NGS)ハンズオン講習会 から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「第3部 NGS解析 (中~上級) (農学生命情報科学特論II) Linux環境でのデータ解析:マッピング、トリミング、アセンブリ」をお送りします。約5時間53分です。
本講習では、主に
・NGS連載第5回(残り)、第6回(W10-6まで)
・RパッケージQuasRを用いたRNA-seqデータのマッピング
・末端塩基のトリミング(Biostringsとfastx_trimmer)
・トリミング前後のde novoアセンブルとマッピング結果の評価
・Illumina MiSeqデータの特徴と前処理(FastQCとFaQCs)
・de novoゲノムアセンブリ(Velvet)
をハンズオン形式で学びます。
講義資料 (PDF: 約11.9MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,NGS速習・ハンズオン,Linux,R,配列解析","https://youtu.be/b7jtJ8kaBuE","http://togotv.dbcls.jp/movie/161023NGS_09_kadota.mov","http://doi.org/10.7875/togotv.2016.151","http://togotv.dbcls.jp/images/20161023_0.jpg","161023NGS_09_kadota.mov","thumbnail/20161023_0.jpg","1. Illumina HiSeqデータ(トランスクリプトーム)の乳酸菌ゲノムへのマッピング~W14:QuasRパッケージを用いたマッピングの事前準備と本番~(0:05:28)","2. Illumina HiSeqデータ(トランスクリプトーム)の乳酸菌ゲノムへのマッピング~W15:結果の解説、forward側の100-107bp付近に問題があることを特定~(0:55:18)","3. トリミング、de novoトランスクリプトームアセンブリとマッピングの再実行~W16:問題のある領域(forward側の100-107bp)のトリミング~(1:25:25)","4. トリミング、de novoトランスクリプトームアセンブリとマッピングの再実行~W17:トリム後のデータでアセンブリを再実行(Rockhopper2; クラスパス設定関連Tips含む)~(1:46:58)","5. トリミング、de novoトランスクリプトームアセンブリとマッピングの再実行~W18:トリム後のデータでマッピングを再実行(QuasR)~(2:34:06)","6. トリミング、de novoトランスクリプトームアセンブリとマッピングの再実行~W19:トリム前のデータでクオリティチェックを再実行(FastQC)~(2:49:09)","7. Illumina MiSeqデータ(乳酸菌ゲノム)の特徴と前処理~W4:FastQC~(3:24:07)","8. Illumina MiSeqデータ(乳酸菌ゲノム)の特徴と前処理~W5:FaQCs~(3:42:40)","9. Illumina MiSeqデータ(乳酸菌ゲノム)の特徴と前処理~W6:再度FastQC~(3:58:23)","10. de novoゲノムアセンブリ~W7:Bio-LinuxにプレインストールされているVelvet (ver. 1.2.09)を上限のk=31で実行~(4:11:40)","11. de novoゲノムアセンブリ~W8:k=31のアセンブリ結果をRで確認。k=141で実行し、k=31の結果と同じになるのを確認~(4:43:19)","12. de novoゲノムアセンブリ~W9:Velvet (ver. 1.2.10)のインストール~(4:56:46)","13. de novoゲノムアセンブリ~W10:Velvet (ver. 1.2.10)の実行~(5:24:26)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1160","","togotv.2016.150","","20161022","【NGSハンズオン2016】第3部 NGS解析 (中~上級) - Linux環境でのデータ解析:JavaやRの利用法"," 本日の統合TVは、2016年7月19日(火) ~ 8月4日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 平成28年度 次世代シークエンサ(NGS)ハンズオン講習会 から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「第3部 NGS解析 (中~上級) (農学生命情報科学特論II) Linux環境でのデータ解析:JavaやRの利用法」をお送りします。約5時間22分です。
本講習では、主に
・日本乳酸菌学会誌のNGS連載第4回の復習(特にFastQCとFaQCs)
・乳酸菌連載第5回(W13-2まで)
・paired-endファイルのアダプター除去(FaQCs)
・Javaプログラムの設定と実行(Rockhopper2)
・Linux環境でのRの利用法(対話モードとバッチモード)
をハンズオン形式で学びます。
講義資料 (PDF: 約11.7MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,NGS速習・ハンズオン,Linux,R","https://youtu.be/2ej57QRcuBM","http://togotv.dbcls.jp/movie/161022NGS_08_kadota.mov","http://doi.org/10.7875/togotv.2016.150","http://togotv.dbcls.jp/images/20161022_0.jpg","161022NGS_08_kadota.mov","thumbnail/20161022_0.jpg","1. 日本乳酸菌学会誌のNGS連載第4回までの復習(特にFastQCとFaQCs)~まずはFaQCs実行~(0:05:19)","2. 日本乳酸菌学会誌のNGS連載第4回までの復習(特にFastQCとFaQCs)~おさらい~(0:16:07)","3. 日本乳酸菌学会誌のNGS連載第4回までの復習(特にFastQCとFaQCs)~FastQCでIllumina adapterの消滅確認~(0:49:06)","4. Javaプログラムの設定と実行(Rockhopper2)~W2: Javaの確認とダウンロード、GUI版の実行~(1:16:19)","5. Javaプログラムの設定と実行(Rockhopper2)~W3: Linux Tips (&, ps, kill, and nohup)~(1:41:08)","6. Javaプログラムの設定と実行(Rockhopper2)~W4: コマンドライン版の実行(paired-end)、クラスパスの設定~(2:08:20)","7. Javaプログラムの設定と実行(Rockhopper2)~W5: 再実行~(2:37:03)","8. Javaプログラムの設定と実行(Rockhopper2)~W6:コマンドライン版の実行(single-end)~(2:54:59)","9. Linux環境でのRの利用法~W7:起動と終了、QuasRパッケージのインストール(エアーハンズオン)~(3:27:40)","10. Linux環境でのRの利用法~W8:R基本コマンド~(3:45:16)","11. Linux環境でのRの利用法~W9:乳酸菌ゲノム配列取得と基本情報取得(連載第1回の図2)~(3:56:01)","12. Linux環境でのRの利用法~W10:source関数、バッチモードでの利用~(4:18:49)","13. Linux環境でのRの利用法~W12:バッチモードでの利用の発展形、入力ファイルの絶対パス指定~(4:51:11)","14. Linux環境でのRの利用法~W13:gzip圧縮状態での利用~(5:11:22)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1159","","togotv.2016.149","","20161021","【NGSハンズオン2016】第2部 NGS解析 (初~中級) - ChIP-seq"," 本日の統合TVは、2016年7月19日(火) ~ 8月4日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 平成28年度 次世代シークエンサ(NGS)ハンズオン講習会 から、アメリエフ株式会社 山口 昌雄 氏・久保 竜一 氏 による「第2部 NGS解析 (初~中級) ChIP-seq」をお送りします。約5時間42分です。
本講習では、主にChIP-seqにおける代表的なパイプラインについてハンズオン形式で学びます。
講義資料 (PDF: 約3.7MB)
コマンド集(GitHub)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,NGS速習・ハンズオン,ChIP-seq,発現解析,遺伝子","https://youtu.be/edVlKkfi0Cw","http://togotv.dbcls.jp/movie/161021NGS_07_amelieff.mov","http://doi.org/10.7875/togotv.2016.149","http://togotv.dbcls.jp/images/20161021_0.jpg","161021NGS_07_amelieff.mov","thumbnail/20161021_0.jpg","【講義パート】1. ChIP-seqとは(0:08:53)","【講義パート】2. ChIP-seq解析の流れ(0:13:48)","【講義パート】3. 公開データの取得(0:32:01)","【実習パート】4. 公開データの取得(1:14:53)","【実習パート】5. クオリティコントロール(1:18:11)","【実習パート】6. マッピング(2:23:43)","【実習パート】7. ピーク検出(3:01:05)","【実習パート】8. ピークアノテーション(4:37:26)","【実習パート】9. モチーフ探索(4:58:01)","【実習パート】10. まとめ(5:14:40)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1158","","togotv.2016.148","","20161020","【NGSハンズオン2016】第2部 NGS解析 (初~中級) - RNA-seq"," 本日の統合TVは、2016年7月19日(火) ~ 8月4日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 平成28年度 次世代シークエンサ(NGS)ハンズオン講習会 から、アメリエフ株式会社 山口 昌雄 氏・尾上 広祐 氏 による「第2部 NGS解析 (初~中級) RNA-seq」をお送りします。約5時間3分です。
本講習では、主にRNA-seqにおける代表的なパイプラインについてハンズオン形式で学びます。
(注: 冒頭から18分過ぎまで配布資料ではなく、amelieffのウェブページ/資料をもとに講義を行っておりますが、現在は閲覧できません。)
講義資料 (PDF: 約6.2MB)
コマンド集(GitHub)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,NGS速習・ハンズオン,RNA-seq,発現解析,遺伝子","https://youtu.be/EPWfpSA96HI","http://togotv.dbcls.jp/movie/161020NGS_06_amelieff.mov","http://doi.org/10.7875/togotv.2016.148","http://togotv.dbcls.jp/images/20161020_0.jpg","161020NGS_06_amelieff.mov","thumbnail/20161020_0.jpg","【講義パート】1. RNA-seqとは(0:18:54)","【講義パート】2. RNA-seq解析の流れ(0:21:42)","【講義パート】3. 公開データの取得(0:27:03)","【講義パート】4. クオリティコントロール(0:53:12)","【講義パート】5. マッピング(1:03:11)","【講義パート】6. 発現定量(1:23:03)","【実習パート】7. クオリティコントロール(1:38:03)","【実習パート】8. マッピング(2:20:52)","【実習パート】9. 発現定量(3:31:02)","【実習パート】10. 発現比較(4:18:43)","【実習パート】11. 可視化(4:38:10)","【実習パート】12. まとめ(4:51:35)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1157","","togotv.2016.147","","20161019","【NGSハンズオン2016】第2部 NGS解析 (初~中級) - ゲノムReseq、変異解析"," 本日の統合TVは、2016年7月19日(火) ~ 8月4日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 平成28年度 次世代シークエンサ(NGS)ハンズオン講習会 から、アメリエフ株式会社 山口 昌雄 氏・三澤 拓真 氏 による「第2部 NGS解析 (初~中級) ゲノムReseq、変異解析」をお送りします。約4時間28分です。
本講習では、主にゲノムReseqおよび変異解析における代表的なパイプラインについてハンズオン形式で学びます。
講義資料 (PDF: 約3.3MB)
コマンド集(GitHub)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,NGS速習・ハンズオン,ゲノム,Reseq,変異解析","https://youtu.be/kNkzOOHJ3JQ","http://togotv.dbcls.jp/movie/161019NGS_05_amelieff.mov","http://doi.org/10.7875/togotv.2016.147","http://togotv.dbcls.jp/images/20161019_0.jpg","161019NGS_05_amelieff.mov","thumbnail/20161019_0.jpg","【講義パート】1. Reseqとは(0:03:04)","【講義パート】2. 検出可能な遺伝子変異(0:09:04)","【講義パート】3. 解析パイプラインとは(0:16:07)","【講義パート】4. 公開データの取得と利用(0:18:34)","【講義パート】5. クオリティコントロールとは(0:41:46)","【講義パート】6. マッピングとは(0:45:07)","【講義パート】7. 変異検出とは(0:49:59)","【講義パート】8. アノテーションとは(1:00:09)","【講義パート】9. 後半パート (実習)で行うこと(1:02:39)","【実習パート】10. 公開データの確認(1:20:07)","【実習パート】11. クオリティコントロール(1:30:11)","【実習パート】12. マッピング(2:17:48)","【実習パート】13. 変異検出(3:04:38)","【実習パート】14. アノテーション(3:46:19)","【実習パート】15. 解析結果の可視化(4:14:07)","【実習パート】16. まとめ(4:21:15)","【実習パート】17. 最後に(4:25:58)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1156","","togotv.2016.146","","20161018","【NGSハンズオン2016】第2部 NGS解析 (初~中級) - NGS解析基礎"," 本日の統合TVは、2016年7月19日(火) ~ 8月4日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 平成28年度 次世代シークエンサ(NGS)ハンズオン講習会 から、アメリエフ株式会社 山口 昌雄 氏・窪川 美雪 氏 による「第2部 NGS解析 (初~中級) NGS解析基礎」をお送りします。約2時間38分です。
本講習では、主に
・ファイル形式
・可視化 (IGV)
・quality check
・マッピング
・アセンブル
をハンズオン形式で学びます。
講義資料 (PDF: 約2.7MB)
コマンド集(GitHub)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,NGS速習・ハンズオン","https://youtu.be/L6tsLVFGljQ","http://togotv.dbcls.jp/movie/161018NGS_04_amelieff.mov","http://doi.org/10.7875/togotv.2016.146","http://togotv.dbcls.jp/images/20161018_0.jpg","161018NGS_04_amelieff.mov","thumbnail/20161018_0.jpg","【講義パート】1. NGSデータ解析で主に使用するファイル形式(0:14:30)","【実習パート】2. データのクオリティチェックとクリーニング(1:13:48)","【実習パート】3. NGSデータのマッピング(1:49:23)","【実習パート】4. 【実践!】新しいソフトウェアの導入(1:54:24)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1155","","togotv.2016.145","","20161017","【NGSハンズオン2016】第1部 統計解析 - トランスクリプトーム解析2"," 本日の統合TVは、2016年7月19日(火) ~ 8月4日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 平成28年度 次世代シークエンサ(NGS)ハンズオン講習会 から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「第1部 統計解析 (農学生命情報科学特論I) トランスクリプトーム解析2」をお送りします。約4時間33分です。
本講習では、主に
・反復あり3群間比較(TCCによるANOVA的な解析)
・デザイン行列、post-hoc test
・遺伝子間クラスタリング(MBCluster.Seq)
・反復あり3群間比較(EBSeqやbaySeqによる発現パターン分類)
・反復なし3群間比較(TCC)、および結果の解釈
・(データの正規化、TCC正規化を組み合わせた各種解析)
をハンズオン形式で学びます。
講義資料 (PDF: 約7.3MB)
解析データ (ZIP: 約0.4MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,NGS速習・ハンズオン,発現解析,遺伝子","https://youtu.be/oE05juOP5xQ","http://togotv.dbcls.jp/movie/161017NGS_03_kadota.mov","http://doi.org/10.7875/togotv.2016.145","http://togotv.dbcls.jp/images/20161017_0.jpg","161017NGS_03_kadota.mov","thumbnail/20161017_0.jpg","1. 反復あり3群間比較(TCCによるANOVA的な解析)(0:01:52)","2. デザイン行列、post-hoc test~「G1 vs. G2」~(0:40:42)","3. デザイン行列、post-hoc test~「G1 vs. G2」~(1:01:05)","4. デザイン行列、post-hoc test~「G1 vs. G3」~(1:20:11)","5. デザイン行列、post-hoc test~「G2 vs. G3」~(1:36:36)","6. デザイン行列、post-hoc test~コントラストで「G1 vs. G2」と「G1 vs. G3」~(1:51:36)","7. デザイン行列、post-hoc test~「Post-hoc testの2群間比較」と「通常の2群間比較」の違い~(2:00:02)","8. 遺伝子間クラスタリング~MBCluster.Seq単体での利用~(2:22:20)","9. 遺伝子間クラスタリング~「TCC正規化 + MBCluster.Seq」~(2:48:20)","10. 遺伝子間クラスタリング~「TCC正規化 + MBCluster.Seq」とTCC発現変動解析の組み合わせ~(2:56:24)","11. 反復あり3群間比較(EBSeqやbaySeqによる発現パターン分類)~baySeq~(3:15:05)","12. 反復あり3群間比較(EBSeqやbaySeqによる発現パターン分類)~TCC結果を含めてbaySeqの発現パターン分類結果上で議論する~(3:53:01)","13. 反復なし3群間比較(TCC)、および結果の解釈(4:13:39)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1154","","togotv.2016.144","","20161016","【NGSハンズオン2016】第1部 統計解析 - トランスクリプトーム解析1"," 本日の統合TVは、2016年7月19日(火) ~ 8月4日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 平成28年度 次世代シークエンサ(NGS)ハンズオン講習会 から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「第1部 統計解析 (農学生命情報科学特論I) トランスクリプトーム解析1」をお送りします。約4時間32分です。
本講習では、主に
・カウントデータ取得以降の統計解析(RNA-seq)
・サンプル間クラスタリング、結果の解釈
・発現変動解析(反復あり2群間比較)
・分布やモデル、実験デザイン
・反復なし2群間比較(TCC, DESeq2)、および結果の解釈
をハンズオン形式で学びます。
講義資料 (PDF: 約6.5MB)
解析データ (ZIP: 約3.2MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,NGS速習・ハンズオン,発現解析,遺伝子","https://youtu.be/q822hvTeu-Q","http://togotv.dbcls.jp/movie/161016NGS_02_kadota.mov","http://doi.org/10.7875/togotv.2016.144","http://togotv.dbcls.jp/images/20161016_0.jpg","161016NGS_02_kadota.mov","thumbnail/20161016_0.jpg","1. カウントデータ、データの正規化(基礎)、RPK、RPM、RPKM (0:03:59)","2. サンプル間クラスタリング、結果の解釈~20150729の復習(Blekhmanのデータ)、Tips~(0:42:28)","3. サンプル間クラスタリング、結果の解釈~ReCountのbodymapデータ~(1:20:16)","4. サンプル間クラスタリング、結果の解釈~giladデータ~(1:34:15)","5. サンプル間クラスタリング、結果の解釈~マージ(bodymap + gilad)後のデータ~(1:49:21)","6. 発現変動解析(反復あり2群間比較)~Blekhmanのデータ(DEGが多い場合)、M-A plot~(2:06:24)","7. 発現変動解析(反復あり2群間比較)~モデル、分布、統計的手法、Blekhmanのデータ(DEGがそれほど多くない場合)~(2:41:13)","8. 発現変動解析(反復あり2群間比較)~Blekhmanのデータ(DEGがほとんどない同一群の場合)~(2:51:52)","9. 発現変動解析(反復あり2群間比較)~倍率変化(2倍以上、1/2以下の発現変動)を用いた場合~(3:05:02)","10. 発現変動解析(反復あり2群間比較)~giladのデータ(オス肝臓3サンプル vs. メス肝臓3サンプル;計6人)~(3:11:36)","11. 実験デザイン、反復なし2群間比較~MAQCのtechnical replicatesデータ(7 brain samples vs. 7 UHR samples)~(3:17:15)","12. 実験デザイン、反復なし2群間比較~MAQCのbiological replicatesデータ(1 brain samples vs. 1 UHR samples)~(3:42:15)","13. 実験デザイン、反復なし2群間比較~反復なし2群間比較:maqc (pooled)~(3:53:12)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1153","","togotv.2016.143","","20161015","【NGSハンズオン2016】第1部 統計解析 - ゲノム解析、塩基配列解析"," 本日の統合TVは、2016年7月19日(火) ~ 8月4日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 平成28年度 次世代シークエンサ(NGS)ハンズオン講習会 から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「第1部 統計解析 (農学生命情報科学特論I) ゲノム解析、塩基配列解析」をお送りします。約4時間51分です。
本講習では、主に
・NGS解析手段、ウェブツール(DDBJ Pipeline)との連携
・k-mer解析(k個の連続塩基に基づく各種解析)の基礎と応用
・塩基ごとの出現頻度解析(k=1)、2連続塩基の出現頻度解析(k=2)
・塩基配列解析を行うための基本スキルの復習や作図
・de novoアセンブリ時のエラー補正やゲノムサイズ推定の基本的な考え方
をハンズオン形式で学びます。
講義資料 (PDF: 約7.3MB)
解析データ (ZIP: 約2.2MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,NGS速習・ハンズオン,ゲノム,塩基配列,配列解析","https://youtu.be/TSa1yPy_sdM","http://togotv.dbcls.jp/movie/161015NGS_01_kadota.mov","http://doi.org/10.7875/togotv.2016.143","http://togotv.dbcls.jp/images/20161015_0.jpg","161015NGS_01_kadota.mov","thumbnail/20161015_0.jpg","1. NGS解析手段、ウェブツール(DDBJ Pipeline)との連携 (0:08:02)","2. DDBJ PipelineでPlatanusを実行 (0:26:06)","3. k-mer解析(k個の連続塩基に基づく各種解析)の基礎~塩基ごとの出現頻度解析(k=1)~ (0:34:39)","4. k-mer解析(k個の連続塩基に基づく各種解析)の基礎~一気に計算~ (0:56:04)","5. k-mer解析(k個の連続塩基に基づく各種解析)の基礎~2連続塩基の出現頻度解析(k=2)、基本スキルの復習や作図~ (1:22:30)","6. de novoアセンブリ時のエラー補正やゲノムサイズ推定の基本的な考え方~ランダムな塩基配列(仮想ゲノムおよび仮想NGSデータ)の作成~ (2:11:18)","7. de novoアセンブリ時のエラー補正やゲノムサイズ推定の基本的な考え方~k-mer解析の応用、ゲノムサイズ推定の基礎~ (2:39:33)","8. de novoアセンブリ時のエラー補正やゲノムサイズ推定の基本的な考え方~ゲノムサイズ推定(1,000 bpの仮想ゲノムの場合)~ (3:04:24)","9. de novoアセンブリ時のエラー補正やゲノムサイズ推定の基本的な考え方~ゲノムサイズ推定(1,000 bpの仮想ゲノム;4X → 10X coverageの場合)~ (3:15:58)","10. de novoアセンブリ時のエラー補正やゲノムサイズ推定の基本的な考え方~k-mer出現頻度分布~ (3:28:02)","11. de novoアセンブリ時のエラー補正やゲノムサイズ推定の基本的な考え方~シークエンスエラーを含む場合~ (3:56:10)","12. de novoアセンブリ時のエラー補正やゲノムサイズ推定の基本的な考え方~最終確認~ (4:19:31)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1152","","togotv.2016.142","","20161014","SPARQL によるアプリケーション開発 @ 第1回RDF講習会","本日の統合TVは、2016年10月7日に開催された第1回 RDF 講習会から、ライフサイエンス統合データベースセンター (DBCLS) 片山 俊明 による「SPARQL によるアプリケーション開発」をお送りします。約35分です。
本講習会では、「Linked Open Data と RDF」、「NBDC, DBCLS における RDF への取り組み」、「SPARQL入門」の3部構成で、RDFやその関連技術に関する基礎から、SPARQLによるクエリの書き方まで、特に、生命科学分野のRDFデータに焦点をあてて解説し、既存のRDFデータを活用する方法の習得を目指します。
発表スライドはこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,RDF","https://youtu.be/BUMrMTY7uyI","http://togotv.dbcls.jp/movie/161014RDF_07_katayama.mov","http://doi.org/10.7875/togotv.2016.142","http://togotv.dbcls.jp/images/20161014_0.jpg","161014RDF_07_katayama.mov","thumbnail/20161014_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1151","","togotv.2016.141","","20161013","SPARQLの言語仕様とクエリ @ 第1回RDF講習会","本日の統合TVは、2016年10月7日に開催された第1回 RDF 講習会から、ライフサイエンス統合データベースセンター (DBCLS) 山本 泰智 による「SPARQLの言語仕様とクエリ」をお送りします。約32分です。
本講習会では、「Linked Open Data と RDF」、「NBDC, DBCLS における RDF への取り組み」、「SPARQL入門」の3部構成で、RDFやその関連技術に関する基礎から、SPARQLによるクエリの書き方まで、特に、生命科学分野のRDFデータに焦点をあてて解説し、既存のRDFデータを活用する方法の習得を目指します。
発表スライドはこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,RDF","https://youtu.be/C1D01xiHXjg","http://togotv.dbcls.jp/movie/161013RDF_06_yy.mov","http://doi.org/10.7875/togotv.2016.141","http://togotv.dbcls.jp/images/20161013_0.jpg","161013RDF_06_yy.mov","thumbnail/20161013_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1150","","togotv.2016.140","","20161012","SPARQL の基本 @ 第1回RDF講習会","本日の統合TVは、2016年10月7日に開催された第1回 RDF 講習会から、フリーランスエンジニア 岡別府 陽子 氏による「SPARQL の基本」をお送りします。約33分です。
本講習会では、「Linked Open Data と RDF」、「NBDC, DBCLS における RDF への取り組み」、「SPARQL入門」の3部構成で、RDFやその関連技術に関する基礎から、SPARQLによるクエリの書き方まで、特に、生命科学分野のRDFデータに焦点をあてて解説し、既存のRDFデータを活用する方法の習得を目指します。
発表スライドはこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,RDF","https://youtu.be/OKbo8PrQpwQ","http://togotv.dbcls.jp/movie/161012RDF_05_OKB.mov","http://doi.org/10.7875/togotv.2016.140","http://togotv.dbcls.jp/images/20161012_0.jpg","161012RDF_05_OKB.mov","thumbnail/20161012_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1149","","togotv.2016.139","","20161011","RDF 開発のためのサービス @ 第1回RDF講習会","本日の統合TVは、2016年10月7日に開催された第1回 RDF 講習会から、ライフサイエンス統合データベースセンター (DBCLS) 片山 俊明 による「RDF 開発のためのサービス」をお送りします。約27分です。
本講習会では、「Linked Open Data と RDF」、「NBDC, DBCLS における RDF への取り組み」、「SPARQL入門」の3部構成で、RDFやその関連技術に関する基礎から、SPARQLによるクエリの書き方まで、特に、生命科学分野のRDFデータに焦点をあてて解説し、既存のRDFデータを活用する方法の習得を目指します。
発表スライドはこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,RDF","https://youtu.be/7FOJEYT6eyk","http://togotv.dbcls.jp/movie/161011RDF_04_katayama.mov","http://doi.org/10.7875/togotv.2016.139","http://togotv.dbcls.jp/images/20161011_0.jpg","161011RDF_04_katayama.mov","thumbnail/20161011_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1148","","togotv.2016.138","","20161010","RDFによるデータ統合 @ 第1回RDF講習会","本日の統合TVは、2016年10月7日に開催された第1回 RDF 講習会から、ライフサイエンス統合データベースセンター (DBCLS) 川島 秀一 による「RDFによるデータ統合」をお送りします。約19分です。
本講習会では、「Linked Open Data と RDF」、「NBDC, DBCLS における RDF への取り組み」、「SPARQL入門」の3部構成で、RDFやその関連技術に関する基礎から、SPARQLによるクエリの書き方まで、特に、生命科学分野のRDFデータに焦点をあてて解説し、既存のRDFデータを活用する方法の習得を目指します。
発表スライドはこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,RDF","https://youtu.be/-MlJjTyqA3g","http://togotv.dbcls.jp/movie/161010RDF_03_kawashima.mov","http://doi.org/10.7875/togotv.2016.138","http://togotv.dbcls.jp/images/20161010_0.jpg","161010RDF_03_kawashima.mov","thumbnail/20161010_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1147","","togotv.2016.137","","20161009","SPARQL を支える技術 @ 第1回RDF講習会","本日の統合TVは、2016年10月7日に開催された第1回 RDF 講習会から、ライフサイエンス統合データベースセンター (DBCLS) 川島 秀一 による「SPARQL を支える技術」をお送りします。約47分です。
本講習会では、「Linked Open Data と RDF」、「NBDC, DBCLS における RDF への取り組み」、「SPARQL入門」の3部構成で、RDFやその関連技術に関する基礎から、SPARQLによるクエリの書き方まで、特に、生命科学分野のRDFデータに焦点をあてて解説し、既存のRDFデータを活用する方法の習得を目指します。
発表スライドはこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,RDF","https://youtu.be/FwQhxziD6rQ","http://togotv.dbcls.jp/movie/161009RDF_02_kawashima.mov","http://doi.org/10.7875/togotv.2016.137","http://togotv.dbcls.jp/images/20161009_0.jpg","161009RDF_02_kawashima.mov","thumbnail/20161009_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1146","","togotv.2016.136","","20161008","LOD の基礎知識 @ 第1回RDF講習会","本日の統合TVは、2016年10月7日に開催された第1回 RDF 講習会から、国立情報学研究所 加藤 文彦 氏による「LOD の基礎知識」をお送りします。約40分です。
本講習会では、「Linked Open Data と RDF」、「NBDC, DBCLS における RDF への取り組み」、「SPARQL入門」の3部構成で、RDFやその関連技術に関する基礎から、SPARQLによるクエリの書き方まで、特に、生命科学分野のRDFデータに焦点をあてて解説し、既存のRDFデータを活用する方法の習得を目指します。
発表スライドはこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,RDF","https://youtu.be/cYXtFH_7_jk","http://togotv.dbcls.jp/movie/161008RDF_01_kato.mov","http://doi.org/10.7875/togotv.2016.136","http://togotv.dbcls.jp/images/20161008_0.jpg","161008RDF_01_kato.mov","thumbnail/20161008_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1145","","togotv.2016.135","","20160927","Metascapeを使って、遺伝子リストの生物学的解釈をする"," マイクロアレイ実験や次世代シーケンシング(NGS)などで得られた大量な遺伝子を扱う際に、どういう機能を持つ遺伝子が変化する傾向にあるかを知るエンリッチメント解析は非常に有用な解析手法です。
Metascapeは、ウェブ上でヒト・マウス・ラットのエンリッチメント解析ができるツールです。リストに含まれる遺伝子にどのような機能を持つものが多いか、クラスタリングなどによって直感的に分析することができます。IDリストのほかタイムコースなどの複数リストデータも使用可能で、複数リスト間のアノテーションについて差分を表示することもできます。
本動画ではMetascapeの基本的な使い方について、説明します。","遺伝子,発現解析,可視化,パスウェイ解析,ウェブツール","https://youtu.be/WgsXeywBvVk","http://togotv.dbcls.jp/movie/160927_metascape.mov","http://doi.org/10.7875/togotv.2016.135","http://togotv.dbcls.jp/images/20160927_0.jpg","160927_metascape.mov","thumbnail/20160927_0.jpg","1. Single listのエンリッチメント解析 (0:43) ","2. ID conversion (1:26) ","3. Annotation (1:51) ","4. Membership (2:25) ","5. Enrichment (3:12) ","6. エンリッチメント解析の結果 (3:21) ","7. Multiple listのエンリッチメント解析 (4:47) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1144","","togotv.2016.134","","20160914","次世代シーケンスデータを用いたオミクス解析 @ AJACS東女医大","本日の統合TVは、2016年9月12日に開催された統合データベース講習会:AJACS東女医大から、国立研究開発法人 国立がん研究センター 先端医療開発センター (NCC-EPOC) 鈴木 絢子 研究員 による「次世代シーケンサーを用いたオミクス解析」をお送りします。約1時間6分です。
本講習では、主に新型DNAシーケンサー (High-Throughput Sequencer, HTS) から得られる塩基配列データを国立遺伝学研究所スーパーコンピュータシステムを使ってマッピングする方法とそれらをIGVを使って可視化する方法について学びます。また、NGSに関するデータベース、新技術について紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,データベース,ウェブツール,スパコン,発現解析,可視化","https://youtu.be/TZ2X7t4NbUM","http://togotv.dbcls.jp/movie/160914AJACS63_03_suzuki.mov","http://doi.org/10.7875/togotv.2016.134","http://togotv.dbcls.jp/images/20160914_0.jpg","160914AJACS63_03_suzuki.mov","thumbnail/20160914_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1143","","togotv.2016.133","","20160913","次世代シーケンスデータベースの使い方 @ AJACS東女医大","本日の統合TVは、2016年9月12日に開催された統合データベース講習会:AJACS東女医大から、ライフサイエンス統合データベースセンター (DBCLS) 大田 達郎 による「次世代シーケンスデータベースの使い方」をお送りします。約2時間2分です。
本講習では、主に新型DNAシーケンサー (High-Throughput Sequencer, HTS) から得られる塩基配列データと、それに基づく生物学的データを公開しているデータベースの概要、およびデータベースからのデータの取得の手順を学びます。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習, AJACS, NGS, 発現解析, ChIP-seq, 可視化","https://youtu.be/5nzCXhGrftE","http://togotv.dbcls.jp/movie/160913AJACS63_02_ohta.mov","http://doi.org/10.7875/togotv.2016.133","http://togotv.dbcls.jp/images/20160913_0.jpg","160913AJACS63_02_ohta.mov","thumbnail/20160913_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1142","","togotv.2016.132","","20160912","NBDCの紹介とNBDCが提供するサービス @ AJACS東女医大","本日の統合TVは、2016年9月12日に開催された統合データベース講習会:AJACS東女医大から、バイオサイエンスデータベースセンター (NBDC) 森 亮樹 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約1時間11分です。
本講習では、主にIntegbioデータベースカタログ、生命科学データベース横断検索、生命科学系データベースアーカイブ、NBDCヒトデータベースの使い方について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NBDC,データベース","https://youtu.be/WHpVas8xX4Y","http://togotv.dbcls.jp/movie/160912AJACS63_01_mori.mov","http://doi.org/10.7875/togotv.2016.132","http://togotv.dbcls.jp/images/20160912_0.jpg","160912AJACS63_01_mori.mov","thumbnail/20160912_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1141","","togotv.2016.131","","20160908","Cytoscape を使ったデータの可視化 @ AJACS京都2","本日の統合TVは、2016年9月1-2日に開催された統合データベース講習会:AJACS京都2から、バイオサイエンスデータベースセンター (NBDC) 櫛田 達矢 による「Cytoscapeを使ったデータの可視化」をお送りします。約1時間22分です。
本講習では、Cytoscapeの特徴、機能について概説したのち、ライフサイエンスデータの可視化方法について、実際の操作方法をハンズオン形式で学びます。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,パスウェイ解析,発現解析,遺伝子,可視化,ソフトウェア","https://youtu.be/LQsVU5qqjf8","http://togotv.dbcls.jp/movie/160908AJACS62_06_kushida.mov","http://doi.org/10.7875/togotv.2016.131","http://togotv.dbcls.jp/images/20160908_0.jpg","160908AJACS62_06_kushida.mov","thumbnail/20160908_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1140","","togotv.2016.130","","20160907","NGSデータから新たな知識を導出するための高次解析 @ AJACS京都2","本日の統合TVは、2016年9月1-2日に開催された統合データベース講習会:AJACS京都2から、理化学研究所 情報基盤センター バイオインフォマティクス研究開発ユニット 尾崎 遼 基礎科学特別研究員 による「NGSデータから新たな知識を導出するための高次解析」をお送りします。約2時間35分です。
本講習では、自ら取得した(または公共データベースから取得した)NGS低次解析済みデータの高次解析の方法を学ぶことを目的として、NGSデータの形式を理解すること、NGSデータ高次解析の基礎知識を理解すること、自分でコマンドを打って高次解析を体験すること、自身の問題意識に応じて解析の方法を調べられるようになることを目標にしています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習, AJACS, NGS, 発現解析,可視化,遺伝子,R,データベース","https://youtu.be/kyBUfQdmZa8","http://togotv.dbcls.jp/movie/160907AJACS62_05_ozaki.mov","http://doi.org/10.7875/togotv.2016.130","http://togotv.dbcls.jp/images/20160907_0.jpg","160907AJACS62_05_ozaki.mov","thumbnail/20160907_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1139","","togotv.2016.129","","20160906","次世代シーケンスデータベースの使い方 @ AJACS京都2","本日の統合TVは、2016年9月1-2日に開催された統合データベース講習会:AJACS京都2から、ライフサイエンス統合データベースセンター (DBCLS) 大田 達郎 による「次世代シーケンスデータベースの使い方」をお送りします。約1時間35分です。
本講習では、主に新型DNAシーケンサー (High-Throughput Sequencer, HTS) から得られる塩基配列データと、それに基づく生物学的データを公開しているデータベースの概要、およびデータベースからのデータの取得の手順を学びます。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習, AJACS, NGS, 発現解析, ChIP-seq, 可視化,データベース,塩基配列","https://youtu.be/tcz0QZ6Ru20","http://togotv.dbcls.jp/movie/160906AJACS62_04_ohta.mov","http://doi.org/10.7875/togotv.2016.129","http://togotv.dbcls.jp/images/20160906_0.jpg","160906AJACS62_04_ohta.mov","thumbnail/20160906_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1138","","togotv.2016.128","","20160905","パスウェイデータベース @ AJACS京都2","本日の統合TVは、2016年9月1-2日に開催された統合データベース講習会:AJACS京都2から、京都大学 化学研究所 五斗 進 准教授 による「パスウェイデータベース」をお送りします。約1時間30分です。
本講習では、パスウェイデータベースの概要とデータ形式などを紹介するとともに、主にBioCyc、Reactome、KEGGの使って、手持ちのオミックスデータをパスウェイにマッピングする方法について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,パスウェイ解析,発現解析,遺伝子,可視化,ウェブツール,データベース","https://youtu.be/y7t7g89SZmg","http://togotv.dbcls.jp/movie/160905AJACS62_03_goto.mov","http://doi.org/10.7875/togotv.2016.128","http://togotv.dbcls.jp/images/20160905_0.jpg","160905AJACS62_03_goto.mov","thumbnail/20160905_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1137","","togotv.2016.127","","20160904","メタボローム解析の紹介 @ AJACS京都2","本日の統合TVは、2016年9月1-2日に開催された統合データベース講習会:AJACS京都2から、かずさDNA研究所 櫻井 望 チーム長 による「メタボローム解析の紹介」をお送りします。約1時間21分です。
本講習では、メタボローム解析の概要を紹介するとともに、ChemSpiderやHuman Metabolome Database (HMDB)、Kazusa Molecular Formula Searcher (MFSearcher)を使って化合物を検索する方法やMassBankを使ったMS/MS検索とその解釈について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,メタボローム,データベース","https://youtu.be/2t3eLl8PMIg","http://togotv.dbcls.jp/movie/160904AJACS62_02_sakurai.mov","http://doi.org/10.7875/togotv.2016.127","http://togotv.dbcls.jp/images/20160904_0.jpg","160904AJACS62_02_sakurai.mov","thumbnail/20160904_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1136","","togotv.2016.126","","20160903","NBDCの紹介とNBDCが提供するサービス @ AJACS京都2","本日の統合TVは、2016年9月1-2日に開催された統合データベース講習会:AJACS京都2から、バイオサイエンスデータベースセンター (NBDC) / ライフサイエンス統合データベースセンター (DBCLS) 箕輪 真理 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約1時間24分です。
本講習では、主にIntegbioデータベースカタログ、生命科学データベース横断検索、生命科学系データベースアーカイブ、NBDCヒトデータベースの使い方について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NBDC,データベース","https://youtu.be/gFDD58y5j0E","http://togotv.dbcls.jp/movie/160903AJACS62_01_minowa.mov","http://doi.org/10.7875/togotv.2016.126","http://togotv.dbcls.jp/images/20160903_0.jpg","160903AJACS62_01_minowa.mov","thumbnail/20160903_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1135","","togotv.2016.125","","20160813","オミックスデータと統計解析 @ AJACSこまち ","本日の統合TVは、2016年8月8-9日に開催された統合データベース講習会:AJACSこまちから、岩手医科大学 いわて東北メディカル・メガバンク機構 生体情報解析部門 古川 亮平 助教 による「オミックスデータと統計解析」をお送りします。約1時間59分です。
本講習では、Rの基本操作から、統計量の算出や回帰分析/分散分析の実行とその結果を表にまとめる方法、多重性の問題を補正したP値で回避する方法などを通じて、膨大なデータの中から、目的のデータにうまくアクセスし、個々の解析結果からうまく情報を取り出す方法についてハンズオンで学びます。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,R,NGS,ソフトウェア","https://youtu.be/uaTqKj2jgh4","http://togotv.dbcls.jp/movie/160813AJACS61_05_furukawa.mov","http://doi.org/10.7875/togotv.2016.125","http://togotv.dbcls.jp/images/20160813_0.jpg","160813AJACS61_05_furukawa.mov","thumbnail/20160813_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1134","","togotv.2016.124","","20160812","化合物データベース・パスウェイデータベースの紹介 @ AJACSこまち","本日の統合TVは、2016年8月8-9日に開催された統合データベース講習会:AJACSこまちから、国立遺伝学研究所 DDBJ センター 時松 敏明 アノテータ による「化合物データベース・パスウェイデータベースの紹介」をお送りします。約1時間47分です。
本講習では、化合物データベース・パスウェイデータベースの概要とデータ形式などを紹介するとともに、主にBioCyc、KEGG、PubChem、KNApSAcKの使い方について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,パスウェイ解析,化合物,可視化,ウェブツール,データベース","https://youtu.be/EXuBvVhbzSg","http://togotv.dbcls.jp/movie/160812AJACS61_04_tokimatsu.mov","http://doi.org/10.7875/togotv.2016.124","http://togotv.dbcls.jp/images/20160812_0.jpg","160812AJACS61_04_tokimatsu.mov","thumbnail/20160812_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1133","","togotv.2016.123","","20160811","生物学的解釈をするための遺伝子発現DB・解析ツールの使い方 @ AJACSこまち ","本日の統合TVは、2016年8月8-9日に開催された統合データベース講習会:AJACSこまちから、ライフサイエンス統合データベースセンター (DBCLS) 小野 浩雅 による「生物学的解釈をするための遺伝子発現DB・解析ツールの使い方」をお送りします。約2時間22分です。
本講習では、統合TVを使って、研究現場で頻繁に使われるデータベースやツールの使い方を知る方法をはじめ、RefExを使って個々の遺伝子の発現プロファイルを調べる方法、DAVIDを用いて発現データの結果を生物学的に解釈する方法について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,発現解析,データベース,ウェブツール","https://youtu.be/jgUFOX-WbQI","http://togotv.dbcls.jp/movie/160811AJACS61_03_hono.mov","http://doi.org/10.7875/togotv.2016.123","http://togotv.dbcls.jp/images/20160811_0.jpg","160811AJACS61_03_hono.mov","thumbnail/20160811_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1132","","togotv.2016.122","","20160810","塩基配列解析のためのデータベース・ウェブツールとCRISPRガイドRNA設計 @ AJACSこまち","本日の統合TVは、2016年8月8-9日に開催された統合データベース講習会:AJACSこまちから、ライフサイエンス統合データベースセンター (DBCLS) 内藤 雄樹 による「塩基配列解析のためのデータベース・ウェブツールとCRISPRガイドRNA設計」をお送りします。約1時間26分です。
本講習では、主にNCBI データベース、NCBI BLAST、UCSC BLAT、UCSCゲノムブラウザの基本的な使い方について実習形式で紹介しています。
また、塩基配列検索に関連する有用サイトとして、統合遺伝子検索GGRNA、高速配列検索GGGenome、siRNA設計ウェブサーバsiDirect、CRISPR設計ウェブサーバCRISPRdirectの使い方についても活用例を交えながら紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,塩基配列,配列解析,CRISPR,データベース,ウェブツール","https://youtu.be/Oht0iEvma8Y","http://togotv.dbcls.jp/movie/160810AJACS61_02_naito.mov","http://doi.org/10.7875/togotv.2016.122","http://togotv.dbcls.jp/images/20160810_0.jpg","160810AJACS61_02_naito.mov","thumbnail/20160810_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1131","","togotv.2016.121","","20160809","NBDCの紹介とNBDCが提供するサービス @ AJACSこまち","本日の統合TVは、2016年8月8-9日に開催された統合データベース講習会:AJACSこまちから、バイオサイエンスデータベースセンター (NBDC) 森 亮樹 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約1時間26分です。
本講習では、主にIntegbioデータベースカタログ、生命科学データベース横断検索、生命科学系データベースアーカイブ、NBDCヒトデータベースの使い方について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NBDC,データベース","https://youtu.be/JaVHcidBKwU","http://togotv.dbcls.jp/movie/160809AJACS61_01_mori.mov","http://doi.org/10.7875/togotv.2016.121","http://togotv.dbcls.jp/images/20160809_0.jpg","160809AJACS61_01_mori.mov","thumbnail/20160809_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1130","","togotv.2016.120","","20160808","jPOSTリポジトリへのデータ登録 @ jPOST Workshop 2016","本日の統合TVは、2016年7月27日に開催されたjPOST Workshop 2016 : プロテオームデータと生命科学データベースから、熊本大学 小林 大樹 氏 による「jPOST リポジトリへのデータ登録」をお送りします。約39分です。
ワークショップの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,実習,登録方法,タンパク質,プロテオーム,データベース","https://youtu.be/E6-HUFbzmiE","http://togotv.dbcls.jp/movie/160808_jPOST_03_kobayashi.mov","http://doi.org/10.7875/togotv.2016.120","http://togotv.dbcls.jp/images/20160808_0.jpg","160808_jPOST_03_kobayashi.mov","thumbnail/20160808_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1129","","togotv.2016.119","","20160807","さまざまなタンパク質関連データベース @ jPOST Workshop 2016 ","本日の統合TVは、2016年7月27日に開催されたjPOST Workshop 2016 : プロテオームデータと生命科学データベースから、バイオサイエンスデータベースセンター 畠中 秀樹 による「さまざまなタンパク質関連データベース」をお送りします。約39分です。
ワークショップの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,タンパク質,データベース,配列解析,構造解析,可視化","https://youtu.be/LbB1dpFUa64","http://togotv.dbcls.jp/movie/160807_jPOST_02_hatanaka.mov","http://doi.org/10.7875/togotv.2016.119","http://togotv.dbcls.jp/images/20160807_0.jpg","160807_jPOST_02_hatanaka.mov","thumbnail/20160807_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1128","","togotv.2016.118","","20160806","ゲノムと遺伝子発現DBの現状 − トランスオミクスのための基礎知識 @ jPOST Workshop 2016","本日の統合TVは、2016年7月27日に開催されたjPOST Workshop 2016 : プロテオームデータと生命科学データベースから、ライフサイエンス統合データベースセンター 坊農 秀雅 による「ゲノムと遺伝子発現DBの現状 − トランスオミクスのための基礎知識」をお送りします。約33分です。
ワークショップの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,発現解析,データベース,ウェブツール,ゲノム","https://youtu.be/AhZhZpkm9Qg","http://togotv.dbcls.jp/movie/160806_jPOST_01_bono.mov","http://doi.org/10.7875/togotv.2016.118","http://togotv.dbcls.jp/images/20160806_0.jpg","160806_jPOST_01_bono.mov","thumbnail/20160806_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1127","","togotv.2016.117","","20160805","JST/NBDC が提供するサービス及びプロジェクト概観 @ All-in-one 合同講習会 2016","本日の統合TVは、2016年7月23日に開催されたAll-in-one 合同講習会 2016 ~バイオビッグデータ解析入門~から、バイオサイエンスデータベースセンター (NBDC) 大波 純一 による「JST/NBDC が提供するサービス及びプロジェクト概観」をお送りします。約1時間です。
生命科学の分野では、研究で得られたデータをただ単に公開するだけでなく、データベースシステムとして別の研究者が再利用しやすいように整備して、社会に還元することまでが一般的になりつつあります。しかもデータベースの情報解析を出発点として新しい知見を得るデータ駆動型研究や、データベース整備のためのツールや基準作りも盛んであり、日々一歩先の未来を見据えた研究開発や政策決定が必須です。
科学技術振興機構(JST)バイオサイエンスデータベースセンター(NBDC)では、このような生命科学分野の新しい流れをサポートするため、研究プロジェクトのファンディング事業や、多数のデータベース・ツール・インフラ設備の提供、日進月歩の研究手法を学習するための講習会の開催など、幅広い事業を展開しています。
NBDCが提供している研究や学習に役立つサービスと、プロジェクトの概観について紹介します。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,DBCLS,NBDC,All-in-one合同講習会","https://youtu.be/Wf9hbwyTGQM","http://togotv.dbcls.jp/movie/160805_allinone_05_onami.mov","http://doi.org/10.7875/togotv.2016.117","http://togotv.dbcls.jp/images/20160805_0.jpg","160805_allinone_05_onami.mov","thumbnail/20160805_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1126","","togotv.2016.116","","20160804","文献情報を利用したサービスの活用法 @ All-in-one 合同講習会 2016","本日の統合TVは、2016年7月23日に開催されたAll-in-one 合同講習会 2016 ~バイオビッグデータ解析入門~から、ライフサイエンス統合データベースセンター (DBCLS) 山本 泰智 による「文献情報を利用したサービスの活用法」をお送りします。約54分です。
生命科学分野において文献情報はPubMed/MEDLINEを利用して取得することが多いと思います。また、近年はフルテキストをPMCから無償で取得できる論文も増加し、購読契約をしていない雑誌の論文でも読めることが多くなりました。DBCLSではこれらの文献関連データベースを利用し、日々の研究活動がより効率的になるよう様々なサービスを提供しています。講習会ではPubMedやDBCLSで提供中のこれらのサービスを紹介します。今回は略語に関する情報を効率よく得られるAllie、PubMed/MEDLINEに含まれる書誌情報で用いられている英語表現を素早く検索できるinMeXes、そして論文の本文中で他の論文を引用する記述(引用文脈)を、引用される論文を軸に閲覧できるサービスColilについて、それぞれサービス内容や活用事例などを説明します。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,DBCLS,文献検索,文章執筆,辞書,All-in-one合同講習会","https://youtu.be/JO9erLFsD0s","http://togotv.dbcls.jp/movie/160804_allinone_04_yamamoto.mov","http://doi.org/10.7875/togotv.2016.116","http://togotv.dbcls.jp/images/20160804_0.jpg","160804_allinone_04_yamamoto.mov","thumbnail/20160804_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1125","","togotv.2016.115","","20160803","ホモロジー・モデリングによるタンパク質の立体構造予測 @ All-in-one 合同講習会 2016","本日の統合TVは、2016年7月23日に開催されたAll-in-one 合同講習会 2016 ~バイオビッグデータ解析入門~から、大阪大学 蛋白質研究所 川端 猛 氏 による「ホモロジー・モデリングによるタンパク質の立体構造予測」をお送りします。約1時間10分です。
タンパク質のアミノ酸配列だけから、その立体構造を予測することを、タンパク質の立体構造予測と呼びます。予備知識なしに立体構造を予測することは大変困難です。しかし「立体構造はアミノ酸配列より進化的に保存しやすい」という経験則があるため、近縁のタンパク質の立体構造が入手できれば、それを鋳型にすることで、比較的簡単に立体構造のモデルを作成することができます。例えば、ミオグロビンの立体構造を鋳型にして、ヘモグロビンα鎖の立体構造を予測することができます。この予測法をホモロジー・モデリング法と呼びます。本演習では、まず、比較的小さなタンパク質のホモロジー・モデリングを実際に行ってみます。また、ホモロジー・モデリング法は、いくつかの分子が結合した複合体の予測にも適用することができます。HOMCOSサーバを用いた、複合体の検索とモデリングの紹介も行います。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,PDB,データベース,構造解析,タンパク質,All-in-one合同講習会","https://youtu.be/s9YFsGzkFos","http://togotv.dbcls.jp/movie/160803_allinone_03_kawabata.mov","http://doi.org/10.7875/togotv.2016.115","http://togotv.dbcls.jp/images/20160803_0.jpg","160803_allinone_03_kawabata.mov","thumbnail/20160803_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1124","","togotv.2016.114","","20160802","DDBJデータベースを用いた配列の検索と解析 @ All-in-one 合同講習会 2016","本日の統合TVは、2016年7月23日に開催されたAll-in-one 合同講習会 2016 ~バイオビッグデータ解析入門~から、国立遺伝学研究所 DDBJ センター 有田 正規 氏による「DDBJデータベースを用いた配列の検索と解析」をお送りします。約1時間11分です。
血液中で酸素を運搬するヘモグロビンをテーマに、公共データベースを用いて遺伝子配列の検索や比較をおこなう方法を解説します。グロビン遺伝子を例に、分子時計という概念や分子系統樹の作り方も紹介します。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。
","講演,DDBJ,データベース,配列解析,遺伝子,系統樹,All-in-one合同講習会","https://youtu.be/MBwvn2onq50","http://togotv.dbcls.jp/movie/160802_allinone_02_arita.mov","http://doi.org/10.7875/togotv.2016.114","http://togotv.dbcls.jp/images/20160802_0.jpg","160802_allinone_02_arita.mov","thumbnail/20160802_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1123","","togotv.2016.113","","20160801","立体構造データの検索・可視化法 @ All-in-one 合同講習会 2016","本日の統合TVは、2016年7月23日に開催されたAll-in-one 合同講習会 2016 ~バイオビッグデータ解析入門~から、大阪大学 蛋白質研究所 工藤 高裕 氏 による「立体構造データの検索・可視化法」をお送りします。約49分です。
立体構造データ計測法の概略(X線、NMR、電子顕微鏡)、データフォーマット、検索法、基本的な分子ビューアの使い方について説明します。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,PDB,データベース,PDB,PDBj,タンパク質,構造解析,可視化,All-in-one合同講習会","https://youtu.be/rxHPB7gmhp0","http://togotv.dbcls.jp/movie/160801_allinone_01_kudo.mov","http://doi.org/10.7875/togotv.2016.113","http://togotv.dbcls.jp/images/20160801_0.jpg","160801_allinone_01_kudo.mov","thumbnail/20160801_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1122","","togotv.2016.112","","20160713","ライフサイエンス分野データの可視化と共有化@AJACS安芸"," 本日の統合TVは、2016年7月5-6日に開催された統合データベース講習会:AJACS安芸から、ライフサイエンス統合データベースセンター(DBCLS) 坊農 秀雅 による「ライフサイエンス分野データの可視化と共有化」をお送りします。約1時間23分です。
本講習では、JalviewやUCSC Genome Browserなどを使って配列データの可視化する方法や、数値データの可視化のために統計解析ツールRを用いて、パイチャート(pie chart)や主成分分析(PCA: Principal Component Analysis)、階層クラスタリング(Hierachical Clustering)、ヒートマップ(heatmap)を作成する方法について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,発現解析,データベース,ウェブツール,可視化,R,Bioconductor,配列解析","https://youtu.be/Ew11y0h63yE","http://togotv.dbcls.jp/movie/160713_AJACS60_bono.mov","http://doi.org/10.7875/togotv.2016.112","http://togotv.dbcls.jp/images/20160713_0.jpg","160713_AJACS60_bono.mov","thumbnail/20160713_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1121","","togotv.2016.111","","20160712","文献情報を活用する@AJACS安芸"," 本日の統合TVは、2016年7月5-6日に開催された統合データベース講習会:AJACS安芸から、ライフサイエンス統合データベースセンター(DBCLS) 山本 泰智 による「文献情報を活用する」をお送りします。約1時間21分です。
本講習では、PubMedの効率的な検索方法を紹介するとともに、DBCLSの提供する文献情報活用サービスであるAllieやinMeXes、Colilの使い方について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,文献検索,文章執筆,辞書","https://youtu.be/pFtQz-52d78","http://togotv.dbcls.jp/movie/160712_AJACS60_yamamoto.mov","http://doi.org/10.7875/togotv.2016.111","http://togotv.dbcls.jp/images/20160712_0.jpg","160712_AJACS60_yamamoto.mov","thumbnail/20160712_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1120","","togotv.2016.110","","20160711","メタボローム解析の紹介@AJACS安芸"," 本日の統合TVは、2016年7月5-6日に開催された統合データベース講習会:AJACS安芸から、かずさDNA研究所 櫻井 望 チーム長 による「メタボローム解析の紹介」をお送りします。約1時間20分です。
本講習では、メタボローム解析の概要を紹介するとともに、ChemSpiderやHuman Metabolome Database (HMDB)、Kazusa Molecular Formula Searcher (MFSearcher)を使って化合物を検索する方法やMassBankを使ったMS/MS検索とその解釈について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,メタボローム,データベース","https://youtu.be/haRjT6ftL5M","http://togotv.dbcls.jp/movie/160711_AJACS60_sakurai.mov","http://doi.org/10.7875/togotv.2016.110","http://togotv.dbcls.jp/images/20160711_0.jpg","160711_AJACS60_sakurai.mov","thumbnail/20160711_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1119","","togotv.2016.109","","20160710","DDBJ Pipelineを用いたDNA多型注釈解析の実習@AJACS安芸"," 本日の統合TVは、2016年7月5-6日に開催された統合データベース講習会:AJACS安芸から、国立遺伝学研究所 大量遺伝情報研究室 望月 孝子 特任研究員 による「DDBJ Pipelineを用いたDNA多型注釈解析の実習」をお送りします。約1時間13分です。
本講習では、DDBJ Read Annotation PipelineやPitagora-Galaxy、DNApod: DNA Polymorphism annOtation Databaseを使ったDNAの多型注釈解析について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,DDBJ,パイプライン,多型","https://youtu.be/W9TN1nVMQDA","http://togotv.dbcls.jp/movie/160710_AJACS60_mochizuki.mov","http://doi.org/10.7875/togotv.2016.109","http://togotv.dbcls.jp/images/20160710_0.jpg","160710_AJACS60_mochizuki.mov","thumbnail/20160710_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1118","","togotv.2016.108","","20160709","遺伝子発現DBの使い方@AJACS安芸"," 本日の統合TVは、2016年7月5-6日に開催された統合データベース講習会:AJACS安芸から、ライフサイエンス統合データベースセンター(DBCLS) 坊農 秀雅 による「遺伝子発現DBの使い方」をお送りします。約1時間17分です。
本講習では、EBI ArrayExpressやNCBI Gene Expression Omnibus(GEO)を使って興味ある実験データセットを検索する方法や、DBCLS AOEを使ってそれらを絞り込む方法、RefExを使って個々の遺伝子の発現プロファイルを調べる方法について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,発現解析,データベース,ウェブツール","https://youtu.be/pk8lW-Mw-Dw","http://togotv.dbcls.jp/movie/160709_AJACS60_bono.mov","http://doi.org/10.7875/togotv.2016.108","http://togotv.dbcls.jp/images/20160709_0.jpg","160709_AJACS60_bono.mov","thumbnail/20160709_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1117","","togotv.2016.107","","20160708","パスウェイデータベースの紹介とKEGG PATHWAYの使い方@AJACS安芸"," 本日の統合TVは、2016年7月5-6日に開催された統合データベース講習会:AJACS安芸から、ライフサイエンス統合データベースセンター(DBCLS) 守屋 勇樹 による「パスウェイデータベースの紹介とKEGG PATHWAYの使い方」をお送りします。約1時間28分です。
本講習では、パスウェイデータベースの概要とデータ形式などを紹介するとともに、主にBioCyc、Reactome、KEGGの使い方に加え、DAVIDを用いて発現データの結果を KEGG パスウェイにマッピングする方法について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,パスウェイ解析,発現解析,遺伝子,可視化,ウェブツール","https://youtu.be/Hdwet-jLSAE","http://togotv.dbcls.jp/movie/160708_AJACS60_moriya.mov","http://doi.org/10.7875/togotv.2016.107","http://togotv.dbcls.jp/images/20160708_0.jpg","160708_AJACS60_moriya.mov","thumbnail/20160708_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1116","","togotv.2016.106","","20160707","NBDCの紹介とNBDCが提供するサービス@AJACS安芸","本日の統合TVは、2016年7月5-6日に開催された統合データベース講習会:AJACS安芸から、バイオサイエンスデータベースセンター (NBDC) 森 亮樹 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約1時間57分です。
本講習では、主にIntegbioデータベースカタログ、生命科学データベース横断検索、生命科学系データベースアーカイブ、NBDCヒトデータベースの使い方について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NBDC,データベース","https://youtu.be/WSU57VsBENQ","http://togotv.dbcls.jp/movie/160707_AJACS60_mori.mov","http://doi.org/10.7875/togotv.2016.106","http://togotv.dbcls.jp/images/20160707_0.jpg","160707_AJACS60_mori.mov","thumbnail/20160707_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1115","","togotv.2016.105","","20160706","次世代シークエンサデータ解析の基礎知識 @AJACS前橋","本日の統合TVは、2016年6月21日に開催された統合データベース講習会:AJACS前橋から、理化学研究所 予防医療・ゲノミクス応用開発ユニット 森岡 勝樹 センター研究員 による「次世代シークエンサデータ解析の基礎知識」をお送りします。約2時間40分です。
本講習では、次世代シークエンサー(NGS)でこれから実験をしたい・する人を対象に、必ず押さえておくべきデータ解析の基礎知識を紹介します。その後、ChIP-seq解析初心者コースとして、ChIP-seq解析のために最適化されたGalaxyサーバであるNebulaを使って、NGSデータ解析の実際について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習, AJACS, NGS, 発現解析, ChIP-seq, 可視化, 遺伝子","https://youtu.be/3KUdKeM7Jo0","http://togotv.dbcls.jp/movie/160706AJACS59_morioka.mov","http://doi.org/10.7875/togotv.2016.105","http://togotv.dbcls.jp/images/20160706_0.jpg","160706AJACS59_morioka.mov","thumbnail/20160706_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1114","","togotv.2016.104","","20160705","生物学的解釈をするための遺伝子発現DB・解析ツールの使い方 @AJACS前橋","本日の統合TVは、2016年6月21日に開催された統合データベース講習会:AJACS前橋から、ライフサイエンス統合データベースセンター (DBCLS) 小野 浩雅 による「生物学的解釈をするための遺伝子発現DB・解析ツールの使い方」をお送りします。約2時間です。
本講習では、RefExを使って個々の遺伝子の発現プロファイルを調べる方法と、DAVIDを用いて発現データの結果を生物学的に解釈する方法について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,発現解析,データベース,ウェブツール","https://youtu.be/pAEw3aN6cWA","http://togotv.dbcls.jp/movie/160705AJACS59_hono.mov","http://doi.org/10.7875/togotv.2016.104","http://togotv.dbcls.jp/images/20160705_0.jpg","160705AJACS59_hono.mov","thumbnail/20160705_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1113","","togotv.2016.103","","20160704","NBDCの紹介とNBDCが提供するサービス @AJACS前橋","本日の統合TVは、2016年6月21日に開催された統合データベース講習会:AJACS前橋から、バイオサイエンスデータベースセンター (NBDC) / ライフサイエンス統合データベースセンター (DBCLS) 箕輪 真理 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約1時間13分です。
本講習では、主にIntegbioデータベースカタログ、生命科学データベース横断検索、生命科学系データベースアーカイブ、NBDCヒトデータベースの使い方について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NBDC,データベース","https://youtu.be/6EgSY3WcIYo","http://togotv.dbcls.jp/movie/160704AJACS59_minowa.mov","http://doi.org/10.7875/togotv.2016.103","http://togotv.dbcls.jp/images/20160704_0.jpg","160704AJACS59_minowa.mov","thumbnail/20160704_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1112","","togotv.2016.102","","20160703","Lightning talks (5min each) @BioHackathon2016"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this video, 17 speakers make presentations entitled as follows. (1:26:02)
- Fast and accurate long read alignment on string graphs by Hajime Suzuki
- The Global Alliance for Genomics and Health APIs by Benedict Paten
- Patient matchmaking over a federated network by Orion Buske
- The Noctua Modeling and other Berkeley BOP software projects by Seth Carbon
- EpiRR - A registry for reference epigenomes by Alessandro Vullo
- Omics Discovery Index-Discovering and Linking Public Omics Datasets by Rafael C Jimenez
- Data Linking with GenboreeKB and the Allele Registry by Lillian Ashmore
- Database Construction and Functional Varidations for the Metabolic Enzymes in Euglena by Takeshi Kawashima
- GlyTouCan Design and Development by Nobuyuki Aoki
- J-phenome: a portal of Japanese phenotype data by Hiroshi Masuya
- Gamification for establishing biomedical edges in Wikidata by Sebastian Burgstaller
- Plant breeding knowledge management using Semantic Web technologies by Erick Antezana
- Finally reusable data, FRED by Alexander Garcia
- Toward the Experimental Protocol Description Standard by Tazro Ohta
- BioRuby by Naohisa Goto
- Traversing class-class relationships for constructing a SPARQL query by Atsuko Yamaguchi
- Question and Answering over Linked Open Data by Jin-Dong Kim
Here are the slides of the lightning talks.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/nTh6--TyW6s","http://togotv.dbcls.jp/movie/160703BH2016_17_LT.mov","http://doi.org/10.7875/togotv.2016.102","http://togotv.dbcls.jp/images/20160703_0.jpg","160703BH2016_17_LT.mov","thumbnail/20160703_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1111","","togotv.2016.101","","20160702","The Graph Positional Burrows-Wheeler Transform"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Adam Novak (University of California, Santa Cruz, USA) makes a presentation entitled ""The Graph Positional Burrows-Wheeler Transform"". (13:58)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/XscYfzxEi_Y","http://togotv.dbcls.jp/movie/160702BH2016_16_adam.mov","http://doi.org/10.7875/togotv.2016.101","http://togotv.dbcls.jp/images/20160702_0.jpg","160702BH2016_16_adam.mov","thumbnail/20160702_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1110","","togotv.2016.100","","20160701","Resequencing against a pan-genome"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Erik Garrison (Wellcome Trust Sanger Institute, UK) makes a presentation entitled ""Resequencing against a pan-genome"". (15:26)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/kgwBMiMs4pA","http://togotv.dbcls.jp/movie/160701BH2016_15_erik.mov","http://doi.org/10.7875/togotv.2016.100","http://togotv.dbcls.jp/images/20160701_0.jpg","160701BH2016_15_erik.mov","thumbnail/20160701_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1109","","togotv.2016.099","","20160630","Dogma conscious and agnostic sharing of high-throughput data"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Hideya Kawaji (RIKEN, Japan) makes a presentation entitled ""Dogma conscious and agnostic sharing of high-throughput data"". (12:12)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/jNEqIaypINg","http://togotv.dbcls.jp/movie/160630BH2016_14_kawaji.mov","http://doi.org/10.7875/togotv.2016.099","http://togotv.dbcls.jp/images/20160630_0.jpg","160630BH2016_14_kawaji.mov","thumbnail/20160630_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1108","","togotv.2016.098","","20160629","Public Data Repositories and Standards in Proteomics"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Eric Deutsch (Institute for Systems Biology, USA) makes a presentation entitled ""Public Data Repositories and Standards in Proteomics"". (15:35)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/MSDQnzWOgxI","http://togotv.dbcls.jp/movie/160629BH2016_13_eric.mov","http://doi.org/10.7875/togotv.2016.098","http://togotv.dbcls.jp/images/20160629_0.jpg","160629BH2016_13_eric.mov","thumbnail/20160629_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1107","","togotv.2016.097","","20160628","disgenet2r: the DisGeNET R package"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Núria Queralt Rosinach (Institut Hospital del Mar d'Investigacions Mèdiques, Spain) makes a presentation entitled ""disgenet2r: the DisGeNET R package"". (17:33)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/glPP-8maOeI","http://togotv.dbcls.jp/movie/160628BH2016_12_nuria.mov","http://doi.org/10.7875/togotv.2016.097","http://togotv.dbcls.jp/images/20160628_0.jpg","160628BH2016_12_nuria.mov","thumbnail/20160628_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1106","","togotv.2016.096","","20160627","Providing Model Organism Linked Data From InterMine"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Michel Dumontier (Stanford University School of Medicine, USA) makes a presentation entitled ""Providing Model Organism Linked Data From InterMine"". (11:01)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/bfb0wU0-vSo","http://togotv.dbcls.jp/movie/160627BH2016_11_michel.mov","http://doi.org/10.7875/togotv.2016.096","http://togotv.dbcls.jp/images/20160627_0.jpg","160627BH2016_11_michel.mov","thumbnail/20160627_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1105","","togotv.2016.095","","20160626","Impact of schema.org in the semantic web and interoperability of life sciences data"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Rafael C Jimenez (ELIXIR, UK) makes a presentation entitled ""Impact of schema.org in the semantic web and interoperability of life sciences data"". (13:39)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/deb0PZ_9mEw","http://togotv.dbcls.jp/movie/160626BH2016_10_rafael.mov","http://doi.org/10.7875/togotv.2016.095","http://togotv.dbcls.jp/images/20160626_0.jpg","160626BH2016_10_rafael.mov","thumbnail/20160626_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1104","","togotv.2016.094","","20160625","Progress towards a semantic representation of PubChem"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Evan Bolton (National Center for Biotechnology Information, USA) makes a presentation entitled ""Progress towards a semantic representation of PubChem"". (18:09)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/BL-2KI-mee4","http://togotv.dbcls.jp/movie/160625BH2016_09_evan.mov","http://doi.org/10.7875/togotv.2016.094","http://togotv.dbcls.jp/images/20160625_0.jpg","160625BH2016_09_evan.mov","thumbnail/20160625_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1103","","togotv.2016.093","","20160624","Facilitating semantic alignment of EBI services"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Simon Jupp (European Bioinformatics Institute, UK) makes a presentation entitled ""Facilitating semantic alignment of EBI services"". (17:06)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/AF3Oezej1OE","http://togotv.dbcls.jp/movie/160624BH2016_08_simon.mov","http://doi.org/10.7875/togotv.2016.093","http://togotv.dbcls.jp/images/20160624_0.jpg","160624BH2016_08_simon.mov","thumbnail/20160624_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1102","","togotv.2016.092","","20160623","Drug Safety portal"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk by App Contest Winners, Juan M Banda (Stanford University, USA) makes a presentation entitled ""Drug Safety portal"". (13:21)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/SyZl3WwW01Y","http://togotv.dbcls.jp/movie/160623BH2016_07_juan.mov","http://doi.org/10.7875/togotv.2016.092","http://togotv.dbcls.jp/images/20160623_0.jpg","160623BH2016_07_juan.mov","thumbnail/20160623_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1101","","togotv.2016.091","","20160622","A Wikidata Powered Model Organism Database of Microbes"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk by App Contest Winners, Timothy E Putman (The Scripps Research Institute, USA) makes a presentation entitled ""A Wikidata Powered Model Organism Database of Microbes"". (16:45)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/3c5IuBGgD3U","http://togotv.dbcls.jp/movie/160622BH2016_06_timothy.mov","http://doi.org/10.7875/togotv.2016.091","http://togotv.dbcls.jp/images/20160622_0.jpg","160622BH2016_06_timothy.mov","thumbnail/20160622_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1100","","togotv.2016.090","","20160621","MetaExplorer: how to mine data from metagenomics experiments"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk by App Contest Winners, Francesco Strozzi (Enterome, France) makes a presentation entitled ""MetaExplorer: how to mine data from metagenomics experiments"". (12:03)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/9mA9xBi4K1I","http://togotv.dbcls.jp/movie/160621BH2016_05_francesco.mov","http://doi.org/10.7875/togotv.2016.090","http://togotv.dbcls.jp/images/20160621_0.jpg","160621BH2016_05_francesco.mov","thumbnail/20160621_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1099","","togotv.2016.089","","20160620","Integrated database “dbTMM”: integration of large-scale data of genomic prospective cohort study in Tohoku Medical Megabank project toward personalized healthcare"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Soichi Ogishima (Tohoku Medical Megabank Organization, Japan) makes a presentation entitled ""Integrated database “dbTMM”: integration of large-scale data of genomic prospective cohort study in Tohoku Medical Megabank project toward personalized healthcare"". (12:12)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/QyLsw-prBuQ","http://togotv.dbcls.jp/movie/160620BH2016_04_ogishima.mov","http://doi.org/10.7875/togotv.2016.089","http://togotv.dbcls.jp/images/20160620_0.jpg","160620BH2016_04_ogishima.mov","thumbnail/20160620_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1098","","togotv.2016.088","","20160619","Hacking user interface designs for the effective exploration of biological data"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Kazuharu Arakawa (Keio University, Japan) makes a presentation entitled ""Hacking user interface designs for the effective exploration of biological data"". (11:57)
Here are the slides of this symposium.
All presentations are listed in the YouTube list.
","講演,English,BioHackathon,RDF","https://youtu.be/OQlimVoZylw","http://togotv.dbcls.jp/movie/160619BH2016_03_arakawa.mov","http://doi.org/10.7875/togotv.2016.088","http://togotv.dbcls.jp/images/20160619_0.jpg","160619BH2016_03_arakawa.mov","thumbnail/20160619_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1097","","togotv.2016.087","","20160618","Welcome address: Institute for Advanced Biosciences"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Masaru Tomita (Keio University, Japan) makes a presentation entitled ""Welcome address: Institute for Advanced Biosciences"". (18:53)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/rCHFMtME5Z4","http://togotv.dbcls.jp/movie/160618BH2016_02_tomita.mov","http://doi.org/10.7875/togotv.2016.087","http://togotv.dbcls.jp/images/20160618_0.jpg","160618BH2016_02_tomita.mov","thumbnail/20160618_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1096","","togotv.2016.086","","20160617","Introduction to the BioHackathon 2016"," NBDC/DBCLS BioHackathon 2016 was held at the Institute for Advanced Biosciences (IAB), Keio University and the Hotel Tachibanaya in Tsuruoka, Yamagata, Japan.
Public symposium of the BioHackathon 2016 was also held at the Institute for Advanced Biosciences (IAB), Keio University, Tsuruoka, Yamagata, Japan on Jun 12 (Sun).
In this talk, Toshiaki Katayama (Database Center for Life Science, Japan) makes a presentation entitled ""Introduction to the BioHackathon 2016"". (5:36)
Here are the slides of this symposium.
All presentations are listed in the YouTube list. ","講演,English,BioHackathon,RDF","https://youtu.be/oc2wQ0i5Kz0","http://togotv.dbcls.jp/movie/160617BH2016_01_katayama.mov","http://doi.org/10.7875/togotv.2016.086","http://togotv.dbcls.jp/images/20160617_0.jpg","160617BH2016_01_katayama.mov","thumbnail/20160617_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1095","","togotv.2016.070","","20160616","GeneTrail2を使って、エンリッチメント解析を行う"," マイクロアレイ実験や次世代シーケンシング(NGS)などで得られた大量な遺伝子を扱う際に、どういう機能を持つ遺伝子が変化する傾向にあるかを知るエンリッチメント解析は非常に有用な解析手法です。
GeneTrail2は、ウェブ上で多様なエンリッチメント解析ができるツールです。トランスクリプトームだけでなく、タンパク質やmiRNA, SNPのエンリッチメント解析をすることもできます。
本動画では、GeneTrail2を使ってNCBI GEOに登録されているマイクロアレイデータのエンリッチメント解析を行う方法をについて紹介します。","遺伝子,発現解析,可視化,パスウェイ解析,ウェブツール","https://youtu.be/9EUea6cb2Q4","http://togotv.dbcls.jp/movie/160616genetrail2.mov","http://doi.org/10.7875/togotv.2016.070","http://togotv.dbcls.jp/images/20160616_0.jpg","160616genetrail2.mov","thumbnail/20160616_0.jpg","1. アップロードするデータの説明 (0:58) ","2. データの入力 (2:13) ","3. 解析方法の選択 (3:38) ","4. 解析結果の閲覧 (4:31) ","5. 解析結果の比較 (7:19) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1094","","togotv.2016.085","","20160615","再現性のあるシステム構築 Reproducible Galaxy Workflow"," 本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、理化学研究所 情報基盤センター バイオインフォマティクス研究開発ユニット 石井 学 氏 による「再現性のあるシステム構築 Reproducible Galaxy Workflow」をお送りします。約15分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール","https://youtu.be/fTjfoXLNA18","http://togotv.dbcls.jp/movie/160615GWS2016_ishii.mov","http://doi.org/10.7875/togotv.2016.085","http://togotv.dbcls.jp/images/20160615_0.jpg","160615GWS2016_ishii.mov","thumbnail/20160615_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1093","","togotv.2016.084","","20160614","Galaxy Tool をパッケージする技術 Dockerとは"," 本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、株式会社アスケイド那須野 淳氏 による「Galaxy Tool をパッケージする技術 Dockerとは」をお送りします。約13分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール","https://youtu.be/rVWswk4sJN0","http://togotv.dbcls.jp/movie/160614GWS2016_nasuno.mov","http://doi.org/10.7875/togotv.2016.084","http://togotv.dbcls.jp/images/20160614_0.jpg","160614GWS2016_nasuno.mov","thumbnail/20160614_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1092","","togotv.2016.083","","20160613","高性能PCクラスタ上で Galaxy を利用する"," 本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、株式会社ナベ インターナショナル 山田有紀恵 氏 による「高性能PCクラスタ上で Galaxy を利用する」をお送りします。約13分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール","https://youtu.be/5lcX4UJWcec","http://togotv.dbcls.jp/movie/160613GWS2016_yamada.mov","http://doi.org/10.7875/togotv.2016.083","http://togotv.dbcls.jp/images/20160613_0.jpg","160613GWS2016_yamada.mov","thumbnail/20160613_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1091","","togotv.2016.082","","20160612","Galaxy ワークフローの紹介 (Variant Calling 02)","本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、合同会社パーシピア 池田 誠 氏 による「Galaxy ワークフローの紹介 (Variant Calling 02)」をお送りします。約11分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール,NGS,ワークフロー","https://youtu.be/kdx8BlYExgk","http://togotv.dbcls.jp/movie/160612GWS2016_ikeda.mov","http://doi.org/10.7875/togotv.2016.082","http://togotv.dbcls.jp/images/20160612_0.jpg","160612GWS2016_ikeda.mov","thumbnail/20160612_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1090","","togotv.2016.081","","20160611","Galaxy ワークフローの紹介 (Variant Calling 01)"," 本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、産業技術総合研究所 ゲノム情報研究センター 新海 典夫 氏 による「Galaxy ワークフローの紹介 (Variant Calling 01)」をお送りします。約7分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール,NGS,ワークフロー","https://youtu.be/RNAAGRxp27Y","http://togotv.dbcls.jp/movie/160611GWS2016_shinkai.mov","http://doi.org/10.7875/togotv.2016.081","http://togotv.dbcls.jp/images/20160611_0.jpg","160611GWS2016_shinkai.mov","thumbnail/20160611_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1089","","togotv.2016.080","","20160610","Galaxy ワークフローの紹介(Variant Calling 植物) DNApod: DNA Polymorphisms annotation Database"," 本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、国立遺伝学研究所 望月 孝子 氏 による「Galaxy ワークフローの紹介(Variant Calling 植物) DNApod: DNA Polymorphisms annotation Database」をお送りします。約11分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール, ワークフロー, 多型, ゲノム,植物","https://youtu.be/dljfQN3dOyw","http://togotv.dbcls.jp/movie/160610GWS2016_mochizuki.mov","http://doi.org/10.7875/togotv.2016.080","http://togotv.dbcls.jp/images/20160610_0.jpg","160610GWS2016_mochizuki.mov","thumbnail/20160610_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1088","","togotv.2016.079","","20160609","遺伝研スパコン、MiGAP、インタークラウド"," 本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、国立遺伝学研究所 小笠原 理 氏 による「遺伝研スパコン、MiGAP、インタークラウド」をお送りします。約13分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール,スパコン,微生物,ゲノム,パイプライン","https://youtu.be/vQzqUGAszHI","http://togotv.dbcls.jp/movie/160609GWS2016_ogasawara.mov","http://doi.org/10.7875/togotv.2016.079","http://togotv.dbcls.jp/images/20160609_0.jpg","160609GWS2016_ogasawara.mov","thumbnail/20160609_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1087","","togotv.2016.078","","20160608","非モデル生物研究のための de novo RNA-seq"," 本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、東京工業大学 生命理工学院 生命理工学系 小寺 正明 氏 による「非モデル生物研究のための de novo RNA-seq」をお送りします。約11分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール,ワークフロー,NGS,RNA-seq","https://youtu.be/ZD8V-5uJ8EM","http://togotv.dbcls.jp/movie/160608GWS2016_kotera.mov","http://doi.org/10.7875/togotv.2016.078","http://togotv.dbcls.jp/images/20160608_0.jpg","160608GWS2016_kotera.mov","thumbnail/20160608_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1086","","togotv.2016.077","","20160607","Galaxy ワークフローの紹介 (RNA-seq)","本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016
から、理化学研究所 統合生命医科学研究センター中岡 慎治 氏 による「Galaxy ワークフローの紹介 (RNA-seq)」をお送りします。約12分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール,ワークフロー,NGS,RNA-seq","https://youtu.be/HRn7KGa6WQw","http://togotv.dbcls.jp/movie/160607GWS2016_nakaoka.mov","http://doi.org/10.7875/togotv.2016.077","http://togotv.dbcls.jp/images/20160607_0.jpg","160607GWS2016_nakaoka.mov","thumbnail/20160607_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1085","","togotv.2016.076","","20160606","Galaxy ワークフローの紹介 (ChIP-seq)","本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、東京大学 先端科学技術研究センター仲木 竜氏 による「Galaxy ワークフローの紹介 (ChIP-seq)」をお送りします。約11分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール,ワークフロー,ChIP-seq","https://youtu.be/07Y5cKTYg0o","http://togotv.dbcls.jp/movie/160606GWS2016_nakaki.mov","http://doi.org/10.7875/togotv.2016.076","http://togotv.dbcls.jp/images/20160606_0.jpg","160606GWS2016_nakaki.mov","thumbnail/20160606_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1084","","togotv.2016.075","","20160605","Galaxy ワークフローの紹介 (BS-seq)","本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、産業技術総合研究所 ゲノム情報研究センター齋藤 裕 氏 による「Galaxy ワークフローの紹介 (BS-seq)」をお送りします。約13分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール,ワークフロー,NGS","https://youtu.be/O2Hsk2ooM8U","http://togotv.dbcls.jp/movie/160605GWS2016_saito.mov","http://doi.org/10.7875/togotv.2016.075","http://togotv.dbcls.jp/images/20160605_0.jpg","160605GWS2016_saito.mov","thumbnail/20160605_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1083","","togotv.2016.074","","20160604","公共Galaxy サーバーの活用","本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、慶應義塾大学 鈴木 治夫 氏 による「公共Galaxy サーバーの活用」をお送りします。約9分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール","https://youtu.be/Rvsa-BwonLo","http://togotv.dbcls.jp/movie/160604GWS2016_suzuki.mov","http://doi.org/10.7875/togotv.2016.074","http://togotv.dbcls.jp/images/20160604_0.jpg","160604GWS2016_suzuki.mov","thumbnail/20160604_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1082","","togotv.2016.073","","20160603","Community Galaxy の紹介","本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、ライフサイエンス統合データベースセンター(DBCLS) 大田 達郎 による「Community Galaxy (コミュニティーギャラクシー= Pitagora Galaxy: ピタゴラギャラクシー)の紹介」をお送りします。約12分です。
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール","https://youtu.be/FH6emQNYuB0","http://togotv.dbcls.jp/movie/160603GWS2016_ohta.mov","http://doi.org/10.7875/togotv.2016.073","http://togotv.dbcls.jp/images/20160603_0.jpg","160603GWS2016_ohta.mov","thumbnail/20160603_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1081","","togotv.2016.072","","20160602","Reproducible computational research with Galaxy","本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016
から、ジョンズ・ホプキンス大学 James Taylor氏 による「Reproducible computational research with Galaxy」をお送りします。約22分です。
The Galaxy Workshop Tokyo 2016 was held in RCAST, The University of Tokyo in Japan. (Apr. 28, 2016) In this talk, James Taylor (Johns Hopkins University) makes a presentation entitled ""Reproducible computational research with Galaxy"". 22:13)
このワークショップの一連の講演動画はYouTubeのリストからも閲覧可能です。","講演,Galaxy,ウェブツール, English","https://youtu.be/vUI3hx0ixF8","http://togotv.dbcls.jp/movie/160602GWS2016_taylor.mov","http://doi.org/10.7875/togotv.2016.072","http://togotv.dbcls.jp/images/20160602_0.jpg","160602GWS2016_taylor.mov","thumbnail/20160602_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1080","","togotv.2016.071","","20160601","使ってみよう Galaxy 公共サーバ編・仮想マシン編(ハンズオントレーニング)","本日の統合TVは、2016年4月28日に開催されたThe Galaxy Workshop Tokyo 2016から、日本オラクル 山中 遼太 氏による「使ってみよう Galaxy 公共サーバ編・仮想マシン編(ハンズオントレーニング)」をお送りします。約1時間20分です。
- はじめよう Galaxy 〜 公共サーバー編 (0:00:00 - 0:46:34)
- はじめよう Galaxy 〜 仮想マシン編 (0:46:35 - 1:05:54)
- はじめよう Galaxy 〜 クラウド編 (1:06:26 - 1:20:36)
","実習,Galaxy,ウェブツール","https://youtu.be/jaDzKvHn3ho","http://togotv.dbcls.jp/movie/160601GWS2016_yamanaka.mov","http://doi.org/10.7875/togotv.2016.071","http://togotv.dbcls.jp/images/20160601_0.jpg","160601GWS2016_yamanaka.mov","thumbnail/20160601_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1079","","togotv.2016.069","","20160426","無料統計ソフトEZR (Easy R)を使ってマウス操作だけで多彩な統計解析をする 〜導入・基本編〜"," Rは、フリーで使える統計解析向けのプログラミング言語です。非常に多彩な解析を行うことができますが、コマンド操作が中心であるため、初心者には敷居が高い面もあります。
EZR (Easy R)は、Rでおこなえる多彩な解析やグラフ作成を、マウス操作だけでおこなえるツールです。本動画では、EZRの導入方法と基本的な操作について紹介します。","ソフトウェア,R,可視化,環境設定","https://youtu.be/M3eRkOL8cZk","http://togotv.dbcls.jp/movie/160426_EZR.mov","http://doi.org/10.7875/togotv.2016.069","http://togotv.dbcls.jp/images/20160426_0.jpg","160426_EZR.mov","thumbnail/20160426_0.jpg","EZRのインストール (0:41)","データのインポート (3:18)","EZRで統計解析 (4:15)","特定のデータを抽出 (5:28)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1078","","togotv.2016.068","","20160425","How to use RefEx: Reference Expression Dataset"," RefEx (http://refex.dbcls.jp/) is Reference Expression Dataset for functional curation of transcriptomes.
RefEx is a challenge to achieve the reference of mammalian tissue gene expression data by different types of methods such as expressed sequence tag (as EST), microarray (as GeneChip), Cap Analysis Gene Expression(as CAGE) and RNA-seq for human, mouse and rat. Recently, CAGE data from The FANTOM5 project which is a broad atlas of human and mouse gene expression in tissues, primary cells and cell lines is included in RefEx.
The main use cases of RefEx are the following three points.
- examine the pattern of gene expression in normal tissues of the body, cells and celllines.
- one-click search for tissue specific genes.
- compare the differences of gene expression levels by experimental methods.
You can easily check the gene expression profiles of unfamiliar genes from the actual measurement data rather than only description in the paper.","遺伝子,発現解析,DBCLS,CAGE,RNA-seq,English","https://youtu.be/Jfo0Uquz15U","http://togotv.dbcls.jp/movie/160425RefEx_en.mov","http://doi.org/10.7875/togotv.2016.068","http://togotv.dbcls.jp/images/20160425_0.jpg","160425RefEx_en.mov","thumbnail/20160425_0.jpg","1. Switch the dataset (0:27) ","2. Incremental search for gene name or symbol (0:37) ","3. Search results (0:54) ","4. Detailed information (1:59) ","5. Viewer for FANTOM5 CAGE data (3:04) ","6. ""Table of contents"" of each gene (5:09) ","7. Search for the tissue specific genes (5:27) ","8. Search filter (6:13) ","9. List function (7:26) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1077","","togotv.2016.067","","20160418","DOGAN - Genome Database of Microorganisms Sequenced at NITE - の使い方","DOGANは、NITE (独立行政法人製品評価技術基盤機構) で全ゲノム配列を解析した微生物のゲノム情報を提供するDBです。産業上有用な微生物や系統的に基準となる微生物を中心に解析が行われています。本動画ではDOGANの特徴とその基本的な使い方を、醤油醸造の乳酸菌として知られる Tetragenococcus halophilus という微生物のゲノムを例にして具体的に紹介します。","ゲノム,塩基配列,遺伝子,データベース,微生物,配列解析","https://youtu.be/3KUyFzK3N8M","http://togotv.dbcls.jp/movie/160418DOGAN.mov","http://doi.org/10.7875/togotv.2016.067","http://togotv.dbcls.jp/images/20160418_0.jpg","160418DOGAN.mov","thumbnail/20160418_0.jpg","1. DOGANトップページの紹介 (0:51) ","2. Tetragenococcus halophilusのゲノム情報 (2:17) ","3. Mapの使い方 (2:40) ","4. ORFページの見方 (3:57) ","5. Search機能の活用 (5:20) ","6. BLAST機能の使い方 (6:32) ","7. アミノ酸配列、塩基配列の入手 (6:54) ","8. Category Search機能の使い方 (7:27) ","9. データの一括ダウンロード (8:51) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1076","","togotv.2016.066","","20160417","SlideSort for comparative NGS data and privacy preserving search for sensitive data"," RDF summit for individual genomics (The 2nd RDF summit in 2016) was held in Tohoku Medical Megabank Organization(ToMMo) in Sendai, Miyagi, Japan.
On the first day of the meeting (19 Feb 2016), an informal seminar was held. The goal of this session is to briefly understand the technologies behind -- share the state of the art results and remaining issues on the reference genome graph, match maker exchange, semantic web genome databases etc.
In this talk, Kana Shimizu makes a presentation entitled ""SlideSort for comparative NGS data and privacy preserving search for sensitive data"". (6:12)
A playlist of this session is also available.","講演,English,BioHackathon,RDF","https://youtu.be/2I-oZ_pfzgk","http://togotv.dbcls.jp/movie/160417RDFsummit_shimizu.mov","http://doi.org/10.7875/togotv.2016.066","http://togotv.dbcls.jp/images/20160417_0.jpg","160417RDFsummit_shimizu.mov","thumbnail/20160417_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1075","","togotv.2016.065","","20160416","Fast dynamic programming algorithm for nucleotide sequences, and long read alignment on string graphs"," RDF summit for individual genomics (The 2nd RDF summit in 2016) was held in Tohoku Medical Megabank Organization(ToMMo) in Sendai, Miyagi, Japan.
On the first day of the meeting (19 Feb 2016), an informal seminar was held. The goal of this session is to briefly understand the technologies behind -- share the state of the art results and remaining issues on the reference genome graph, match maker exchange, semantic web genome databases etc.
In this talk, Hajime Suzuki makes a presentation entitled ""Fast dynamic programming algorithm for nucleotide sequences, and long read alignment on string graphs"". (5:05)
A playlist of this session is also available.","講演,English,BioHackathon,RDF","https://youtu.be/66tvJ94v8nQ","http://togotv.dbcls.jp/movie/160416RDFsummit_suzuki.mov","http://doi.org/10.7875/togotv.2016.065","http://togotv.dbcls.jp/images/20160416_0.jpg","160416RDFsummit_suzuki.mov","thumbnail/20160416_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1074","","togotv.2016.064","","20160415","Big vs enormous data in genomics"," RDF summit for individual genomics (The 2nd RDF summit in 2016) was held in Tohoku Medical Megabank Organization(ToMMo) in Sendai, Miyagi, Japan.
On the first day of the meeting (19 Feb 2016), an informal seminar was held. The goal of this session is to briefly understand the technologies behind -- share the state of the art results and remaining issues on the reference genome graph, match maker exchange, semantic web genome databases etc.
In this talk, Maciek Smuga-Otto makes a presentation entitled ""Big vs enormous data in genomics"". (12:12)
Here are the slides of this talk.
A playlist of this session is also available.","講演,English,BioHackathon,RDF","https://youtu.be/Sk60JcuMhyA","http://togotv.dbcls.jp/movie/160415RDFsummit_otto.mov","http://doi.org/10.7875/togotv.2016.064","http://togotv.dbcls.jp/images/20160415_0.jpg","160415RDFsummit_otto.mov","thumbnail/20160415_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1073","","togotv.2016.063","","20160414","Annotation —???—> variant graph"," RDF summit for individual genomics (The 2nd RDF summit in 2016) was held in Tohoku Medical Megabank Organization(ToMMo) in Sendai, Miyagi, Japan.
On the first day of the meeting (19 Feb 2016), an informal seminar was held. The goal of this session is to briefly understand the technologies behind -- share the state of the art results and remaining issues on the reference genome graph, match maker exchange, semantic web genome databases etc.
In this talk, Kieron Taylor makes a presentation entitled ""Annotation —???—> variant graph"". (15:22)
Here are the slides of this talk.
A playlist of this session is also available.","講演,English,BioHackathon,RDF","https://youtu.be/BUbjHPHSCeE","http://togotv.dbcls.jp/movie/160414RDFsummit_taylor.mov","http://doi.org/10.7875/togotv.2016.063","http://togotv.dbcls.jp/images/20160414_0.jpg","160414RDFsummit_taylor.mov","thumbnail/20160414_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1072","","togotv.2016.062","","20160413","RDF/SPARQL a Swiss-Prot practical perspective"," RDF summit for individual genomics (The 2nd RDF summit in 2016) was held in Tohoku Medical Megabank Organization(ToMMo) in Sendai, Miyagi, Japan.
On the first day of the meeting (19 Feb 2016), an informal seminar was held. The goal of this session is to briefly understand the technologies behind -- share the state of the art results and remaining issues on the reference genome graph, match maker exchange, semantic web genome databases etc.
In this talk, Jerven Bolleman makes a presentation entitled ""RDF/SPARQL a Swiss-Prot practical perspective"". (14:09)
Here are the slides of this talk.
A playlist of this session is also available.","講演,English,BioHackathon,RDF","https://youtu.be/suZ3yzpRn3c","http://togotv.dbcls.jp/movie/160413RDFsummit_bolleman.mov","http://doi.org/10.7875/togotv.2016.062","http://togotv.dbcls.jp/images/20160413_0.jpg","160413RDFsummit_bolleman.mov","thumbnail/20160413_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1071","","togotv.2016.061","","20160412","Exchanging case summaries to discover rare disease cohorts across organizations"," RDF summit for individual genomics (The 2nd RDF summit in 2016) was held in Tohoku Medical Megabank Organization(ToMMo) in Sendai, Miyagi, Japan.
On the first day of the meeting (19 Feb 2016), an informal seminar was held. The goal of this session is to briefly understand the technologies behind -- share the state of the art results and remaining issues on the reference genome graph, match maker exchange, semantic web genome databases etc.
In this talk, Orion Buske makes a presentation entitled ""Exchanging case summaries to discover rare disease cohorts across organizations"". (17:44)
Here are the slides of this talk.
A playlist of this session is also available.","講演,English,BioHackathon,RDF","https://youtu.be/6ygKiMRoN9Y","http://togotv.dbcls.jp/movie/160412RDFsummit_buske.mov","http://doi.org/10.7875/togotv.2016.061","http://togotv.dbcls.jp/images/20160412_0.jpg","160412RDFsummit_buske.mov","thumbnail/20160412_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1070","","togotv.2016.060","","20160411","Indexing Graphs for Path Queries"," RDF summit for individual genomics (The 2nd RDF summit in 2016) was held in Tohoku Medical Megabank Organization(ToMMo) in Sendai, Miyagi, Japan.
On the first day of the meeting (19 Feb 2016), an informal seminar was held. The goal of this session is to briefly understand the technologies behind -- share the state of the art results and remaining issues on the reference genome graph, match maker exchange, semantic web genome databases etc.
In this talk, Jouni Sirén makes a presentation entitled ""Indexing Graphs for Path Queries"". (15:09)
Here are the slides of this talk.
A playlist of this session is also available.","講演,English,BioHackathon,RDF","https://youtu.be/vLSN5u9eVFA","http://togotv.dbcls.jp/movie/160411RDFsummit_siren.mov","http://doi.org/10.7875/togotv.2016.060","http://togotv.dbcls.jp/images/20160411_0.jpg","160411RDFsummit_siren.mov","thumbnail/20160411_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1069","","togotv.2016.059","","20160410","A toolkit for working with genome variation graphs"," RDF summit for individual genomics (The 2nd RDF summit in 2016) was held in Tohoku Medical Megabank Organization(ToMMo) in Sendai, Miyagi, Japan.
On the first day of the meeting (19 Feb 2016), an informal seminar was held. The goal of this session is to briefly understand the technologies behind -- share the state of the art results and remaining issues on the reference genome graph, match maker exchange, semantic web genome databases etc.
In this talk, Erik Garrison makes a presentation entitled ""A toolkit for working with genome variation graphs"". (17:30)
Here are the slides of this talk.
A playlist of this session is also available.","講演,English,BioHackathon,RDF","https://youtu.be/blCnRXaPfQ0","http://togotv.dbcls.jp/movie/160410RDFsummit_garrison.mov","http://doi.org/10.7875/togotv.2016.059","http://togotv.dbcls.jp/images/20160410_0.jpg","160410RDFsummit_garrison.mov","thumbnail/20160410_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1068","","togotv.2016.058","","20160409","The Human Genome Variation Map Graph Bake-Off"," RDF summit for individual genomics (The 2nd RDF summit in 2016) was held in Tohoku Medical Megabank Organization(ToMMo) in Sendai, Miyagi, Japan.
On the first day of the meeting (19 Feb 2016), an informal seminar was held. The goal of this session is to briefly understand the technologies behind -- share the state of the art results and remaining issues on the reference genome graph, match maker exchange, semantic web genome databases etc.
In this talk, Adam Novak makes a presentation entitled ""The Human Genome Variation Map Graph Bake-Off"". (15:38)
Here are the slides of this talk.
A playlist of this session is also available.","講演,English,BioHackathon,RDF","https://youtu.be/BdaFFOD50og","http://togotv.dbcls.jp/movie/160409RDFsummit_novak.mov","http://doi.org/10.7875/togotv.2016.058","http://togotv.dbcls.jp/images/20160409_0.jpg","160409RDFsummit_novak.mov","thumbnail/20160409_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1067","","togotv.2016.057","","20160408","Introduction to the 2nd DBCLS RDF summit"," RDF summit for individual genomics (The 2nd RDF summit in 2016) was held in Tohoku Medical Megabank Organization(ToMMo) in Sendai, Miyagi, Japan.
On the first day of the meeting (19 Feb 2016), an informal seminar was held. The goal of this session is to briefly understand the technologies behind -- share the state of the art results and remaining issues on the reference genome graph, match maker exchange, semantic web genome databases etc.
In this talk, Toshiaki Katayama makes a presentation entitled ""Introduction to the 2nd DBCLS RDF summit"". (12:00)
Here are the slides of this talk.
A playlist of this session is also available.","講演,English,BioHackathon,RDF","https://youtu.be/jqdGHFoyhpY","http://togotv.dbcls.jp/movie/160408RDFsummit_katayama.mov","http://doi.org/10.7875/togotv.2016.057","http://togotv.dbcls.jp/images/20160408_0.jpg","160408RDFsummit_katayama.mov","thumbnail/20160408_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1066","","togotv.2016.056","","20160407","国立遺伝学研究所 一般公開2016 講演会 「進化研究とゲノム解析」"," 本日の統合TVは、2016年4月2日(土)に国立遺伝学研究所で行われた 池尾 一穂 先生 による「進化研究とゲノム解析」をお送りします。 約55分です。
ゲノムとは、個体が持つ全てのDNA(遺伝子)情報のことです。ゲノム研究のための技術革新により、情報科学と生命科学の融合による新しい研究が開始され、 全ゲノム情報を用いた生物の多様性の研究、その成果の応用も始まりました。 最近のゲノム研究の進歩を紹介するとともに、ゲノム情報を利用した生物の多様性を理解するための試みの最近の動向を紹介します。(国立遺伝学研究所 一般公開2016 ウェブサイトより)
","講演","https://youtu.be/UfLJxcrY3D4","http://togotv.dbcls.jp/movie/160407NIG_lecture_ikeo.mov","http://doi.org/10.7875/togotv.2016.056","http://togotv.dbcls.jp/images/20160407_0.jpg","160407NIG_lecture_ikeo.mov","thumbnail/20160407_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1065","","togotv.2016.055","","20160406","国立遺伝学研究所 一般公開2016 講演会 「ゲノムの歩き方」"," 本日の統合TVは、2016年4月2日(土)に国立遺伝学研究所で行われた 一般公開2016 講演会 から 藤山 秋佐夫 先生 による「ゲノムの歩き方」をお送りします。 約60分です。
「生命の流れは、その指令書である遺伝情報が正しく読み取られ、順序正しく実行されてこそ途切れることなく流れ続けます。 ・・・ヒト・ゲノム解析研究は、30億字に記されたヒトの全遺伝情報を解読し、ゲノムの構成、遺伝情報の制御を明らかにし、 ひいては生命の流れの中におけるヒトの存在意義にまで迫ろうとする壮大な計画なのです。(松原謙一)」。 このように宣言して始められたヒトゲノム計画は、15年前に最初のゴールに到達しました。 この講演では、その全体像とその後の展開についてご紹介します。(国立遺伝学研究所 一般公開2016 ウェブサイトより)
","講演","https://youtu.be/jCrvznsy_fM","http://togotv.dbcls.jp/movie/160406NIG_lecture_fujiyama.mov","http://doi.org/10.7875/togotv.2016.055","http://togotv.dbcls.jp/images/20160406_0.jpg","160406NIG_lecture_fujiyama.mov","thumbnail/20160406_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1064","","togotv.2016.054","","20160405","Pitagora Galaxyを使ってマウス操作だけでRNA-seq解析をする","RNA-seqは、次世代シーケンサーを使って組織や細胞の全遺伝子の発現量を網羅的に解析する手法です。非常に有益な手法ですが、それらの解析の多くはコマンドライン操作をともなうため、コマンドライン操作に慣れていない人にとっては敷居が高く敬遠されがちです。
Pitagora Galaxyは、RNA-seqのようなビッグデータでも自身のパソコンを使ってマウス操作だけで解析ができるツールです。本動画では、Pitagora Galaxyを使って、マウス操作だけでRNA-seq解析をする方法を紹介します。","発現情報,ゲノム,遺伝子,可視化,環境設定,ソフトウェア,RNA-seq","https://youtu.be/ZDyor5NbYZs","http://togotv.dbcls.jp/movie/160405pitagora_RNAseq.mov","http://doi.org/10.7875/togotv.2016.054","http://togotv.dbcls.jp/images/20160405_0.jpg","160405pitagora_RNAseq.mov","thumbnail/20160405_0.jpg","1. Pitagora Galaxyのセッティング(0:35)","2. サンプルデータのダウンロード(1:51)","3. Pitagora GalaxyでRNA−seq解析(2:57)","4. Tophatの実行(5:02)","5. Cuffdiffの実行(5:52)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1063","","togotv.2016.053","","20160404","SequenceServerを使って自分のPCで簡単BLAST検索"," SequenceServer (http://www.sequenceserver.com) はウェブアプリケーションのような形でBLAST+ を実行するソフトウェアです。BLAST+ はコマンドライン上で操作するアプリケーションですが、SequenceServer を導入すると、ウェブブラウザ上で BLAST+ を実行することができます。SequenceServer を使えば手軽に BLAST 検索を行うことができます。本動画は Linux 環境で SequenceServer v1.0.7 を導入する方法を説明します。","環境設定,アミノ酸,塩基配列,配列解析,遺伝子,ソフトウェア","https://youtu.be/3q51APEECbM","http://togotv.dbcls.jp/movie/160404sequenceserver.mov","http://doi.org/10.7875/togotv.2016.053","http://togotv.dbcls.jp/images/20160404_0.jpg","160404sequenceserver.mov","thumbnail/20160404_0.jpg","1. SequenceServerの紹介 (0:09)","2. SequenceServerのインストール (1:34)","3. BLAST検索用データベースの構築 (2:37)","4. SequenceServerでBLAST検索 (5:22)","5. BLAST検索結果の閲覧,検索結果やヒットした配列のダウンロード (7:49)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1062","","togotv.2016.052","","20160321","統合TVプロモーションムービー2016","統合TVは、生命科学分野の有用なデータベースやツールの使い方を動画で紹介するウェブサイトです。数多くの解説動画の情報をうまく整理し、ユーザーが真に必要とする情報に素早く容易にたどりつけるようにまとめています。生命科学研究に頻繁に使われるサイトを知り、その使い倒し術を知る手段として、日々の実験や研究の進展のためぜひご活用ください。","DBCLS, 情報収集","https://youtu.be/M77W5zQdUFU","http://togotv.dbcls.jp/movie/160321togotv_promotion.mov","http://doi.org/10.7875/togotv.2016.052","http://togotv.dbcls.jp/images/20160321_0.jpg","160321togotv_promotion.mov","thumbnail/20160321_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1061","","togotv.2016.051","","20160318","次世代シークエンサーDRY解析教本による遺伝子発現解析〜CLCbioでRNA-seq〜@AJACSa三島2","本日の統合TVは、2016年2月25、26日に開催された統合データベース講習会AJACSadvanced(AJACSa)三島2から、株式会社QIAGEN 宮本 真理 氏 による「次世代シークエンサーDRY解析教本による遺伝子発現解析〜CLCbioでRNA-seq〜」をお送りします。約2時間2分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習, AJACS, NGS, 発現解析, RNA-seq, ソフトウェア, 可視化, 遺伝子","https://youtu.be/fe3y58egY3M","http://togotv.dbcls.jp/movie/160318AJACSa2_miyamoto.mov","http://doi.org/10.7875/togotv.2016.051","http://togotv.dbcls.jp/images/20160318_0.jpg","160318AJACSa2_miyamoto.mov","thumbnail/20160318_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1060","","togotv.2016.050","","20160317","次世代シークエンサーDRY解析教本による遺伝子発現解析〜ChIP-seq フォローアップ〜@AJACSa三島2","本日の統合TVは、2016年2月25、26日に開催された統合データベース講習会AJACSadvanced(AJACSa)三島2から、理化学研究所 予防医療・ゲノミクス応用開発ユニット 森岡 勝樹 センター研究員 による「次世代シークエンサーDRY解析教本による遺伝子発現解析〜ChIP-seq フォローアップ〜」をお送りします。約1時間22分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演, AJACS, NGS, 発現解析, ChIP-seq, 可視化, 遺伝子","https://youtu.be/2NkrgTVbHDI","http://togotv.dbcls.jp/movie/160317AJACSa2_morioka.mov","http://doi.org/10.7875/togotv.2016.050","http://togotv.dbcls.jp/images/20160317_0.jpg","160317AJACSa2_morioka.mov","thumbnail/20160317_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1059","","togotv.2016.049","","20160316","次世代シークエンサーDRY解析教本による遺伝子発現解析〜Cufflinks、cummeRbund、DAVID〜@AJACSa三島2","本日の統合TVは、2016年2月25、26日に開催された統合データベース講習会AJACSadvanced(AJACSa)三島2から、ライフサイエンス統合データベースセンター 仲里 猛留 による「次世代シークエンサーDRY解析教本による遺伝子発現解析〜Cufflinks、cummeRbund、DAVID〜」をお送りします。約2時間31分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習, AJACS, NGS, 発現解析, 環境設定, 可視化, 遺伝子","https://youtu.be/XHLHqCru5_4","http://togotv.dbcls.jp/movie/160316AJACSa2_nakazato.mov","http://doi.org/10.7875/togotv.2016.049","http://togotv.dbcls.jp/images/20160316_0.jpg","160316AJACSa2_nakazato.mov","thumbnail/20160316_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1058","","togotv.2016.048","","20160315","次世代シークエンサーDRY解析教本による遺伝子発現解析〜インストール、FASTQC、TopHat〜@AJACSa三島2","本日の統合TVは、2016年2月25、26日に開催された統合データベース講習会AJACSadvanced(AJACSa)三島2から、岩手医科大学 大桃 秀樹 助教による「次世代シークエンサーDRY解析教本による遺伝子発現解析〜インストール、FASTQC、TopHat〜」をお送りします。約1時間54分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習, AJACS, NGS, 発現解析, 環境設定, 遺伝子","https://youtu.be/wLQ2_AB6MUE","http://togotv.dbcls.jp/movie/160315AJACSa2_omomo.mov","http://doi.org/10.7875/togotv.2016.048","http://togotv.dbcls.jp/images/20160315_0.jpg","160315AJACSa2_omomo.mov","thumbnail/20160315_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1057","","togotv.2016.047","","20160314","次世代シークエンサーDRY解析教本による遺伝子発現解析〜オリエンテーション〜@AJACSa三島2","本日の統合TVは、2016年2月25、26日に開催された統合データベース講習会AJACSadvanced(AJACSa)三島2から、ライフサイエンス統合データベースセンター 坊農 秀雅 による「次世代シークエンサーDRY解析教本による遺伝子発現解析〜オリエンテーション〜」をお送りします。約57分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習, AJACS, NGS, 発現解析, 環境設定, 遺伝子","https://youtu.be/5AFEXKbNuS4","http://togotv.dbcls.jp/movie/160314AJACSa2_bono.mov","http://doi.org/10.7875/togotv.2016.047","http://togotv.dbcls.jp/images/20160314_0.jpg","160314AJACSa2_bono.mov","thumbnail/20160314_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1056","","togotv.2016.046","","20160303","データの再現性と再利用を促進するデータジャーナル ~Scientific Dataを例に~","本日の統合TVは、2016年2月8日に東京大学 伊藤謝恩ホールで開催された情報・システム研究機構シンポジウム「~オープンサイエンスにおける研究データのオープン化~」から、Nature Publishing Group オープンリサーチマーケティングマネージャー 新谷 洋子 氏 による「データの再現性と再利用を促進するデータジャーナル ~Scientific Dataを例に~」をお送りします。約32分です。
シンポジウムの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/iAVpOFFy_qY","http://togotv.dbcls.jp/movie/160303ROISsympo_shintani.mov","http://doi.org/10.7875/togotv.2016.046","http://togotv.dbcls.jp/images/20160303_0.jpg","160303ROISsympo_shintani.mov","thumbnail/20160303_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1055","","togotv.2016.045","","20160302","生命科学とオープンデータ","本日の統合TVは、2016年2月8日に東京大学 伊藤謝恩ホールで開催された情報・システム研究機構シンポジウム「~オープンサイエンスにおける研究データのオープン化~」から、東京大学 教授、JST NBDCセンター長、DDBJセンター長 高木 利久 氏 による「生命科学とオープンデータ」をお送りします。約25分です。
シンポジウムの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/a94t0eGl8yQ","http://togotv.dbcls.jp/movie/160302ROISsympo_takagi.mov","http://doi.org/10.7875/togotv.2016.045","http://togotv.dbcls.jp/images/20160302_0.jpg","160302ROISsympo_takagi.mov","thumbnail/20160302_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1054","","togotv.2016.044","","20160301","極域科学とオープンリサーチデータ","本日の統合TVは、2016年2月8日に東京大学 伊藤謝恩ホールで開催された情報・システム研究機構シンポジウム「~オープンサイエンスにおける研究データのオープン化~」から、国立研究開発法人 情報通信研究機構 統合データシステム研究開発室長 村山 泰啓 氏 による「極域科学とオープンリサーチデータ」をお送りします。約32分です。
シンポジウムの一連の動画はYouTubeの再生リストからもご覧いただけます。","講演","https://youtu.be/aESXXBNk1n8","http://togotv.dbcls.jp/movie/160301ROISsympo_murayama.mov","http://doi.org/10.7875/togotv.2016.044","http://togotv.dbcls.jp/images/20160301_0.jpg","160301ROISsympo_murayama.mov","thumbnail/20160301_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1053","","togotv.2016.043","","20160217","Creating a pedigree chart using f-tree","f-tree is a pedigree creating software published by Iwate Medical University.
As you simply enter genealogical information, it automatically creates pedigree charts.
Just enter the family relationships, it is possible to draw a family tree automatically. Furthermore, not only the family relationships, it can also draw information of the disease.
You can download it from the website of “Iwate Tohoku Medical Megabank Organization - Genetics Workshop”.
(Note: Adobe AIR is necessary to install f-tree.)
この動画の 日本語版 は こちらです。","ソフトウェア,家系図,可視化,English","https://youtu.be/fxo4eo7W9II","http://togotv.dbcls.jp/movie/160217_f-tree_e.mov","http://doi.org/10.7875/togotv.2016.043","http://togotv.dbcls.jp/images/20160217_0.jpg","160217_f-tree_e.mov","thumbnail/20160217_0.jpg","Install of Adobe AIR (0:24)","Install of f-tree (1:00)","Input the family information (1:51)","Show and save the family tree (6:15)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1052","","togotv.2016.042","","20160211","Cytoscapeを使ったデータの可視化@AJACS薩摩","本日の統合TVは、2016年1月26-27日に開催された統合データベース講習会:AJACS薩摩から、バイオサイエンスデータベースセンター (NBDC) 櫛田 達矢 による「Cytoscapeを使ったデータの可視化」をお送りします。約91分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,パスウェイ解析,発現解析,遺伝子,可視化,ソフトウェア","https://youtu.be/wzjiKk0qZ-0","http://togotv.dbcls.jp/movie/160211AJACS58_kushida.mov","http://doi.org/10.7875/togotv.2016.042","http://togotv.dbcls.jp/images/20160211_0.jpg","160211AJACS58_kushida.mov","thumbnail/20160211_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1051","","togotv.2016.041","","20160210","メタボローム解析の紹介@AJACS薩摩","本日の統合TVは、2016年1月26-27日に開催された統合データベース講習会:AJACS薩摩から、かずさDNA研究所 櫻井 望 チーム長 による「メタボローム解析の紹介」をお送りします。約78分です。
本講習では、メタボローム解析の概要を紹介するとともに、ChemSpiderやHuman Metabolome Database (HMDB)、Kazusa Molecular Formula Searcher (MFSearcher)を使って化合物を検索する方法やMassBankを使ったMS/MS検索とその解釈について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,メタボローム,データベース","https://youtu.be/nTF2u3rlhic","http://togotv.dbcls.jp/movie/160210AJACS58_sakurai.mov","http://doi.org/10.7875/togotv.2016.041","http://togotv.dbcls.jp/images/20160210_0.jpg","160210AJACS58_sakurai.mov","thumbnail/20160210_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1050","","togotv.2016.040","","20160209","次世代シーケンサーから得られたデータの使い方@AJACS薩摩","本日の統合TVは、2016年1月26-27日に開催された統合データベース講習会:AJACS薩摩から、ライフサイエンス統合データベースセンター 坊農 秀雅 による「次世代シーケンサーから得られたデータの使い方」をお送りします。約165分です。
本講習では、NGSデータ解析の概要を紹介するとともに、よく用いられるNGSの応用やSequence Read Archive (SRA)の使い方、R/BioconductorでNGSデータを解析する方法について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NGS,データベース,ウェブツール","https://youtu.be/-gQUcydk96c","http://togotv.dbcls.jp/movie/160209AJACS58_bono.mov","http://doi.org/10.7875/togotv.2016.040","http://togotv.dbcls.jp/images/20160209_0.jpg","160209AJACS58_bono.mov","thumbnail/20160209_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1049","","togotv.2016.039","","20160208","ゲノム配列とそれに付与されたデータの使い方@AJACS薩摩","本日の統合TVは、2016年1月26-27日に開催された統合データベース講習会:AJACS薩摩から、ライフサイエンス統合データベースセンター 坊農 秀雅 による「ゲノム配列とそれに付与されたデータの使い方」をお送りします。約90分です。
本講習では、主に、NCBIを使ってゲノム配列を探す、NCBI BLASTやGGGenomeを使ってゲノム配列から欲しい領域を探す、UCSCやEnsemblなどの Genome Browser を使ってアノテーションを付加して表示する方法について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,ゲノム,データベース","https://youtu.be/STlDN_UQ24Q","http://togotv.dbcls.jp/movie/160208AJACS58_bono.mov","http://doi.org/10.7875/togotv.2016.039","http://togotv.dbcls.jp/images/20160208_0.jpg","160208AJACS58_bono.mov","thumbnail/20160208_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1048","","togotv.2016.038","","20160207","パスウェイデータベースの紹介とKEGG PATHWAYの使い方@AJACS薩摩","本日の統合TVは、2016年1月26-27日に開催された統合データベース講習会:AJACS薩摩から、ライフサイエンス統合データベースセンター(DBCLS) 守屋 勇樹 による「パスウェイデータベースの紹介とKEGG PATHWAYの使い方」をお送りします。約86分です。
本講習では、パスウェイデータベースの概要とデータ形式などを紹介するとともに、主にBioCyc、Reactome、KEGGの使い方について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習, AJACS,KEGG,パスウェイ解析","https://youtu.be/FwRN7R8XBoM","http://togotv.dbcls.jp/movie/160207AJACS58_moriya.mov","http://doi.org/10.7875/togotv.2016.038","http://togotv.dbcls.jp/images/20160207_0.jpg","160207AJACS58_moriya.mov","thumbnail/20160207_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1047","","togotv.2016.037","","20160206","生物学的解釈をするための遺伝子発現DB・解析ツールの使い方@AJACS薩摩","本日の統合TVは、2016年1月26-27日に開催された統合データベース講習会:AJACS薩摩から、ライフサイエンス統合データベースセンター (DBCLS) 小野 浩雅 による「生物学的解釈をするための遺伝子発現DB・解析ツールの使い方」をお送りします。約124分です。
本講習では、RefExを使って個々の遺伝子の発現プロファイルを調べる方法と、DAVIDを用いて発現データの結果を生物学的に解釈する方法について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,発現解析,データベース,ウェブツール","https://youtu.be/4MA-9pQ-5qY","http://togotv.dbcls.jp/movie/160206AJACS58_hono.mov","http://doi.org/10.7875/togotv.2016.037","http://togotv.dbcls.jp/images/20160206_0.jpg","160206AJACS58_hono.mov","thumbnail/20160206_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1046","","togotv.2016.036","","20160205","NBDCの紹介とNBDCが提供するサービス@AJACS薩摩","本日の統合TVは、2016年1月26-27日に開催された統合データベース講習会:AJACS薩摩から、バイオサイエンスデータベースセンター (NBDC) / ライフサイエンス統合データベースセンター (DBCLS) 箕輪 真理 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約73分です。
本講習では、主にIntegbioデータベースカタログ、生命科学データベース横断検索、生命科学系データベースアーカイブ、NBDCヒトデータベースの使い方について実習形式で紹介しています。
講習会で使用したテキスト・資料はこちらからご覧いただけます。
講習会の一連の動画はYouTubeの再生リストからもご覧いただけます。","実習,AJACS,NBDC,データベース","https://youtu.be/TkYoxqAiwcs","http://togotv.dbcls.jp/movie/160205AJACS58_minowa.mov","http://doi.org/10.7875/togotv.2016.036","http://togotv.dbcls.jp/images/20160205_0.jpg","160205AJACS58_minowa.mov","thumbnail/20160205_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1045","","togotv.2016.035","","20160204","Functional Annotation of Sequences using Blast2GO"," Blast2GO is a user-friendly bioinformatics platform. This tool can run high-throughput functional annotation of novel gene/protein set.
This video introduces fundamental procedures of Blast2GO using sample sequences.
この動画の 日本語版 はこちらです。 ","English,遺伝子,アミノ酸,配列解析,発現解析,可視化,ソフトウェア","https://youtu.be/otc7vVe1Lbc","http://togotv.dbcls.jp/movie/160204Blast2GO_en.mov","http://doi.org/10.7875/togotv.2016.035","http://togotv.dbcls.jp/images/20160204_0.jpg","160204Blast2GO_en.mov","thumbnail/20160204_0.jpg","Download of Blast2GO (0:41)","Homology search by blast and interproscan (2:50)","Mapping (5:12)","Annotation (5:29)","Enrichment Analysis (8:44)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1044","","togotv.2016.034","","20160203","figshareの使い方"," figshare(フィグシェア)は、研究者が研究の過程で得た図表やその他の付随するデータをクラウド上で公開するシステムです。データは、全公開だけでなく、許可した共同研究者のみと制限的に共有をすることも可能です。論文に掲載されていないデータ・不採択となったデータも公開ができます。
アップロードしたデータそれぞれに、タイトル、著者名、研究カテゴリ、タグ、詳細説明などを書き記すことができ、さらに、すべてのデータに固有の識別子(DOI)を付与できます。そのため、データの引用が促進されるとともに、データの閲覧数や引用数などの情報も得られやすくなります。","ウェブツール,データベース,情報収集","https://youtu.be/1pZJX39HLxo","http://togotv.dbcls.jp/movie/160203_figshare.mov","http://doi.org/10.7875/togotv.2016.034","http://togotv.dbcls.jp/images/20160203_0.jpg","160203_figshare.mov","thumbnail/20160203_0.jpg","figshare の概要 (0:13)","使い方の紹介 (1:21)","Sign up (1:27)","Login (1:41)","データの登録方法 (1:54)","データの管理方法 (4:49)","公開データの探し方 (5:14)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1043","","togotv.2016.033","","20160202","生物進化論の新しい展開"," 本日の統合TVは、2016年1月30日(土)に三島市民文化会館小ホールで行われた太田朋子 国立遺伝学研究所名誉教授 クラフォード賞受賞記念講演会 から 太田 朋子 国立遺伝学研究所 名誉教授 による「生物進化論の新しい展開」をお送りします。 約62分です。
太田 名誉教授 は、2015年5月に、生物の進化の仕組みについて、画期的な研究成果を挙げた功績によりスウェーデン王立科学アカデミーからクラフォード賞を授与されました。これを受け、国立遺伝学研究所のある三島市の名声を高め、市民に夢と希望を与えたとして、三島市長特別賞が贈られました。その受賞記念として開催された講演会において、ご自身の研究「分子進化のほぼ中立説」に関することや女性研究者としてのこれまでの経験等をお話いただきました。
","講演","https://youtu.be/TsqgKzXaZtc","http://togotv.dbcls.jp/movie/160202_ohta_lecture.mov","http://doi.org/10.7875/togotv.2016.033","http://togotv.dbcls.jp/images/20160202_0.jpg","160202_ohta_lecture.mov","thumbnail/20160202_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1042","","togotv.2016.032","","20160201","A corpus of psychological diseases and their potential causes"," Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Fabio Rinaldi makes a presentation entitled ""A corpus of psychological diseases and their potential causes"". (9:26)
Here are the slides of this talk.","講演,English,BioHackathon","https://youtu.be/_5gGx2q0GbY","http://togotv.dbcls.jp/movie/160201BLAH2_Rinaldi.mov","http://doi.org/10.7875/togotv.2016.032","http://togotv.dbcls.jp/images/20160201_0.jpg","160201BLAH2_Rinaldi.mov","thumbnail/20160201_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1041","","togotv.2016.031","","20160131","relna: corpus of Relations of Transcription Factors to Genes or Proteins"," Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Ashish Baghudana makes a presentation entitled ""relna: corpus of Relations of Transcription Factors to Genes or Proteins"". (7:06)
","講演,English,BioHackathon","https://youtu.be/hnDAjDNC3tE","http://togotv.dbcls.jp/movie/160131BLAH2_baghudana.mov","http://doi.org/10.7875/togotv.2016.031","http://togotv.dbcls.jp/images/20160131_0.jpg","160131BLAH2_baghudana.mov","thumbnail/20160131_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1040","","togotv.2016.030","","20160130","Unifying knowledge resources for named entity recognition and normalization"," Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Robert Leaman makes a presentation entitled ""Unifying knowledge resources for named entity recognition and normalization"". (10:09)
","講演,English,BioHackathon","https://youtu.be/lZ_B4Yy6ASQ","http://togotv.dbcls.jp/movie/160130BLAH2_Leaman.mov","http://doi.org/10.7875/togotv.2016.030","http://togotv.dbcls.jp/images/20160130_0.jpg","160130BLAH2_Leaman.mov","thumbnail/20160130_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1039","","togotv.2016.029","","20160129","Validating the wisdom of the crowd for pharmacovigilance: linking adverse reactions reported in Social Media to literature"," Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Graciela Gonzalez makes a presentation entitled ""Validating the wisdom of the crowd for pharmacovigilance: linking adverse reactions reported in Social Media to literature"". (39:43)
Here are the slides of this talk.","講演,English,BioHackathon","https://youtu.be/z1zr8-xVNNQ","http://togotv.dbcls.jp/movie/160129BLAH2_Gonzalez.mov","http://doi.org/10.7875/togotv.2016.029","http://togotv.dbcls.jp/images/20160129_0.jpg","160129BLAH2_Gonzalez.mov","thumbnail/20160129_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1038","","togotv.2016.028","","20160128","BioTate, an annotation framework for biomedical information"," Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Alexander Garcia makes a presentation entitled ""BioTate, an annotation framework for biomedical information"". (10:33)
","講演,English,BioHackathon","https://youtu.be/Y0b4bFBpLxw","http://togotv.dbcls.jp/movie/160128BLAH2_Garcia.mov","http://doi.org/10.7875/togotv.2016.028","http://togotv.dbcls.jp/images/20160128_0.jpg","160128BLAH2_Garcia.mov","thumbnail/20160128_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1037","","togotv.2016.027","","20160127","Making tagtog interoperate with PubAnnotation"," Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Juan Miguel Cejuela makes a presentation entitled ""Making tagtog interoperate with PubAnnotation"". (4:25)
","講演,English,BioHackathon","https://youtu.be/IK9LYldJoMQ","http://togotv.dbcls.jp/movie/160127BLAH2_Cejuela.mov","http://doi.org/10.7875/togotv.2016.027","http://togotv.dbcls.jp/images/20160127_0.jpg","160127BLAH2_Cejuela.mov","thumbnail/20160127_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1036","","togotv.2016.026","","20160126","Real-time tagging of biomedical entities"," Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Evangelos Pafilis and Lars Juhl Jensen make a presentation entitled ""Real-time tagging of biomedical entities"". (6:47)
","講演,English,BioHackathon","https://youtu.be/gNFSuPI72zE","http://togotv.dbcls.jp/movie/160126BLAH2_Jensen.mov","http://doi.org/10.7875/togotv.2016.026","http://togotv.dbcls.jp/images/20160126_0.jpg","160126BLAH2_Jensen.mov","thumbnail/20160126_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1035","","togotv.2016.025","","20160125","Lannbridge: transparent interoperability for Linked Annotations"," Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Sampo Pyysalo makes a presentation entitled ""Lannbridge: transparent interoperability for Linked Annotations"". (9:44) ","講演,English,BioHackathon","https://youtu.be/PgRtz93_hfU","http://togotv.dbcls.jp/movie/160125BLAH2_Pyysalo.mov","http://doi.org/10.7875/togotv.2016.025","http://togotv.dbcls.jp/images/20160125_0.jpg","160125BLAH2_Pyysalo.mov","thumbnail/20160125_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1034","","togotv.2016.024","","20160124","From Text to Knowledge Base and back: issues and challenges in Life Sciences"," Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Claire Nédellec makes a presentation entitled ""From Text to Knowledge Base and back: issues and challenges in Life Sciences"". (40:40)
Here are the slides of this talk.","講演,English,BioHackathon","https://youtu.be/7U5Z6Xh--28","http://togotv.dbcls.jp/movie/160124BLAH2_Nédellec.mov","http://doi.org/10.7875/togotv.2016.024","http://togotv.dbcls.jp/images/20160124_0.jpg","160124BLAH2_Nédellec.mov","thumbnail/20160124_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1033","","togotv.2016.023","","20160123","The SPECIES-800 corpus"," Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Evangelos Pafilis and Lars Juhl Jensen make a presentation entitled ""The SPECIES-800 corpus"". (9:40)
","講演,English,BioHackathon","https://youtu.be/2lfd520NixA","http://togotv.dbcls.jp/movie/160123BLAH2_Pafilis.mov","http://doi.org/10.7875/togotv.2016.023","http://togotv.dbcls.jp/images/20160123_0.jpg","160123BLAH2_Pafilis.mov","thumbnail/20160123_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1032","","togotv.2016.022","","20160122","Natural Language Processing and Semantic Annotation of Biomedical Scientific Literature for Knowledge Network Discovery"," Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Cathy Wu makes a presentation entitled ""Natural Language Processing and Semantic Annotation of Biomedical Scientific Literature for Knowledge Network Discovery"". (40:34)
Here are the slides of this talk.","講演,English,BioHackathon","https://youtu.be/VLzsdN-0Ftk","http://togotv.dbcls.jp/movie/160122BLAH2_Wu.mov","http://doi.org/10.7875/togotv.2016.022","http://togotv.dbcls.jp/images/20160122_0.jpg","160122BLAH2_Wu.mov","thumbnail/20160122_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1031","","togotv.2016.021","","20160121","Deriving Linked Annotations from Corpora","Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Mariana Neves makes a presentation entitled ""Deriving Linked Annotations from Corpora"". (5:39)
Here are the slides of this talk.","講演,English,BioHackathon","https://youtu.be/p2VQvh_QlAo","http://togotv.dbcls.jp/movie/160121BLAH2_Neves.mov","http://doi.org/10.7875/togotv.2016.021","http://togotv.dbcls.jp/images/20160121_0.jpg","160121BLAH2_Neves.mov","thumbnail/20160121_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1030","","togotv.2016.020","","20160120","Biomedical semantic technologies: from the bench to the bedside","Biomedical Linked Annotation Hackathon (BLAH) 2 was held in DNA Data Bank of Japan, National Institute of Genetics in Mishima, Shizuoka, Japan. On the first day of the Hackathon (16. Nov.), public symposium of the BLAH 2 was held.
In this talk, Dietrich Rebholz-Schuhmann makes a presentation entitled ""Biomedical semantic technologies: from the bench to the bedside"". (45:04)
Here are the slides of this talk.","講演,English,BioHackathon","https://youtu.be/THtAbZCWk6U","http://togotv.dbcls.jp/movie/160120BLAH2_Rebholz-Schuhmann.mov","http://doi.org/10.7875/togotv.2016.020","http://togotv.dbcls.jp/images/20160120_0.jpg","160120BLAH2_Rebholz-Schuhmann.mov","thumbnail/20160120_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1029","","togotv.2016.019","","20160119","生物多様性情報分野からのインプット@Annotathon2015"," 本日の統合TVは、2015年11月12-13日(木・金)に行われた2015年度 国立遺伝学研究所 研究会 Annotathon2015 (生命科学データベースの利用価値向上のためのアノテーションマラソン) から 国立科学博物館 神保 宇嗣 研究員 による「生物多様性情報分野からのインプット」をお送りします。 約22分です。
研究会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,","https://youtu.be/_DhzsE3YDVc","http://togotv.dbcls.jp/movie/160119annotathon_jinbo.mov","http://doi.org/10.7875/togotv.2016.019","http://togotv.dbcls.jp/images/20160119_0.jpg","160119annotathon_jinbo.mov","thumbnail/20160119_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1028","","togotv.2016.018","","20160118","微生物ゲノムアノテーションの現状と問題点@Annotathon2015"," 本日の統合TVは、2015年11月12-13日(木・金)に行われた2015年度 国立遺伝学研究所 研究会 Annotathon2015 (生命科学データベースの利用価値向上のためのアノテーションマラソン) から 東京工業大学大学院 生命理工学研究科 生命情報専攻 森 宙史 助教 による「微生物ゲノムアノテーションの現状と問題点」をお送りします。 約35分です。
研究会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,微生物,メタゲノム","https://youtu.be/ZBFigNbyXSU","http://togotv.dbcls.jp/movie/160118annotathon_mori.mov","http://doi.org/10.7875/togotv.2016.018","http://togotv.dbcls.jp/images/20160118_0.jpg","160118annotathon_mori.mov","thumbnail/20160118_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1027","","togotv.2016.017","","20160117","ChIP-seqデータベースのためのメタ情報アノテーション@Annotathon2015"," 本日の統合TVは、2015年11月12-13日(木・金)に行われた2015年度 国立遺伝学研究所 研究会 Annotathon2015 (生命科学データベースの利用価値向上のためのアノテーションマラソン) から 九州大学大学院 医学研究院 発生再生医学分野 沖 真弥 助教 による「ChIP-seqデータベースのためのメタ情報アノテーション」をお送りします。 約15分です。
既報のChIP-Seqデータを簡単な操作で半自動的に可視化するSraTailorや、既報のChIP-Seqデータの可視化と解析を行うChIP-Atlasを開発する上で必要となるメタデータのアノテーションの現状と対策についてのお話です。
研究会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,ChIP-seq,NGS,発現解析,遺伝子","https://youtu.be/4WIghwLe0FY","http://togotv.dbcls.jp/movie/160117annotathon_oki.mov","http://doi.org/10.7875/togotv.2016.017","http://togotv.dbcls.jp/images/20160117_0.jpg","160117annotathon_oki.mov","thumbnail/20160117_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1026","","togotv.2016.016","","20160116","ゲノムアノテーションそもそも@Annotathon2015"," 本日の統合TVは、2015年11月12-13日(木・金)に行われた2015年度 国立遺伝学研究所 研究会 Annotathon2015 (生命科学データベースの利用価値向上のためのアノテーションマラソン) から 国立遺伝学研究所 大量遺伝情報研究室 中村 保一 教授 による「ゲノムアノテーションそもそも」をお送りします。 約9分です。
研究会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,ゲノム","https://youtu.be/cdHHsMDT1R0","http://togotv.dbcls.jp/movie/160116annotathon_yn.mov","http://doi.org/10.7875/togotv.2016.016","http://togotv.dbcls.jp/images/20160116_0.jpg","160116annotathon_yn.mov","thumbnail/20160116_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1025","","togotv.2016.015","","20160115","Annotathonのこれまでとこれから@Annotathon2015"," 本日の統合TVは、2015年11月12-13日(木・金)に行われた2015年度 国立遺伝学研究所 研究会 Annotathon2015 (生命科学データベースの利用価値向上のためのアノテーションマラソン) から ライフサイエンス統合データベースセンター 仲里 猛留 による「Annotathonのこれまでとこれから」をお送りします。 約9分です。
研究会の一連の動画はYouTubeの再生リストからもご覧いただけます。","講演,","https://youtu.be/wAHi4R6qMTs","http://togotv.dbcls.jp/movie/160115annotathon_nakazato.mov","http://doi.org/10.7875/togotv.2016.015","http://togotv.dbcls.jp/images/20160115_0.jpg","160115annotathon_nakazato.mov","thumbnail/20160115_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1024","","togotv.2016.014","","20160114","draw.io を使って、フローチャートやネットワーク図を簡単に描く"," draw.ioは、JGraph Ltd が開発・公開している無料の図形形成アプリケーションです。高度なフローチャートやネットワーク図、ベン図などを簡単に作成することができます。インストールが不要で、ブラウザ上で使用する際にも、ログインは不要、さらに日本語対応です。1,000種類を超える多様なステンシルが用意されており、思いのままに欲しい図形を描くことができます。完成した図形は、PDFだけでなく、SVGとHTMLでも出力可能です。
今回は、既存のテンプレートを用いて、図形の複製、置き換え、接続ポイント、テキストの追加、レイアウトの変更などの基本的な操作方法を紹介します。","環境設定,ウェブツール,可視化","https://youtu.be/8q8xcDqo3Eo","http://togotv.dbcls.jp/movie/160114drawio.mov","http://doi.org/10.7875/togotv.2016.014","http://togotv.dbcls.jp/images/20160114_0.jpg","160114drawio.mov","thumbnail/20160114_0.jpg","1. draw.io の概要 (0:12)","2. 既存のテンプレート(0:26)","3. 図形の複製 (2:19)","4. 図形の置き換え(2:57)","5. 接続ポイント(3:17)","6. テキストの追加 (3:32)","7. レイアウトの変更(4:24)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1023","","togotv.2016.013","","20160113","ProteomicsDBを使って ヒトのタンパク質を検索する"," ProteomicsDBは、主に質量分析法のデータを基にしたヒトのタンパク質データベースです。プロテアーゼによる切断部位の検索や人体組織中におけるタンパク質の発現状況を調べることができるほか、シーケンスや質量からタンパク質を検索することができます。また、プロテオームデータの解析も行うことができます。
【参考論文】プロテオミクス:質量分析に基づくヒトプロテオームの概要
本動画では、ProteomicsDBを使って、ヒトのプロテオームデータの検索方法について説明します。","プロテオーム,タンパク質,アミノ酸,データベース,発現解析","https://youtu.be/jwAbNwaKQA8","http://togotv.dbcls.jp/movie/160113proteomicsdb.mov","http://doi.org/10.7875/togotv.2016.013","http://togotv.dbcls.jp/images/20160113_0.jpg","160113proteomicsdb.mov","thumbnail/20160113_0.jpg","1. タンパク質の名称/IDから検索する (0:47)","2. タンパク質の詳細情報を見る (1:32)","3. プロテアーゼによるタンパク質の切断部位を調べる (2:34)","4. タンパク質が人体組織中におけるタンパク質の発現状況を調べる (3:31)","5. シーケンス/質量から検索する (4:31)","6. ヒトの染色体から検索する (4:50)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1022","","togotv.2016.012","","20160112","NIG スパコンでの解析の実践 (DDBJ Pipeline) (ゲノム支援 2015年度 情報解析講習会)"," 本日の統合TVは、DNA Data Bank of Japan (DDBJ) からの「投稿TV」として、2015年11月19-20日(木・金)に行われた 文部科学省 科学研究費新学術領域研究(研究領域提案型)『生命科学系3分野支援活動』ゲノム支援 2015年度 情報解析講習会 から 国立遺伝学研究所 大量遺伝情報研究室 中村 保一 教授による「NIG スパコンでの解析の実践 (DDBJ Pipeline)」をお送りします。 約21分です。
オリジナルのYouTube動画はこちらからご覧いただけます。
また、講習会資料についてはこちらからご覧ください。","実習,DDBJ,スパコン,パイプライン,NGS","https://youtu.be/RVrNJxAfoWI","http://togotv.dbcls.jp/movie/160112genome_yn2.mov","http://doi.org/10.7875/togotv.2016.012","http://togotv.dbcls.jp/images/20160112_0.jpg","160112genome_yn2.mov","thumbnail/20160112_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1021","","togotv.2016.011","","20160111","NIG スーパーコンピュータから DDBJ への接続方法 (ゲノム支援 2015年度 情報解析講習会)"," 本日の統合TVは、DNA Data Bank of Japan (DDBJ) からの「投稿TV」として、2015年11月19-20日(木・金)に行われた 文部科学省 科学研究費新学術領域研究(研究領域提案型)『生命科学系3分野支援活動』ゲノム支援 2015年度 情報解析講習会 から 国立遺伝学研究所 大量遺伝情報研究室 谷澤 靖洋 研究員による「NIG スーパーコンピュータから DDBJ への接続方法」をお送りします。 約13分です。
オリジナルのYouTube動画はこちらからご覧いただけます。
また、講習会資料についてはこちら(Win版) (Mac版)からご覧ください。","実習,DDBJ,スパコン,環境設定","https://youtu.be/8zMT3W-SFKA","http://togotv.dbcls.jp/movie/160111genome_tanizawa.mov","http://doi.org/10.7875/togotv.2016.011","http://togotv.dbcls.jp/images/20160111_0.jpg","160111genome_tanizawa.mov","thumbnail/20160111_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1020","","togotv.2016.010","","20160110","DDBJ と NIG スーパーコンピュータ (ゲノム支援 2015年度 情報解析講習会)","本日の統合TVは、DNA Data Bank of Japan (DDBJ) からの「投稿TV」として、2015年11月19-20日(木・金)に行われた 文部科学省 科学研究費新学術領域研究(研究領域提案型)『生命科学系3分野支援活動』ゲノム支援 2015年度 情報解析講習会 から 国立遺伝学研究所 大量遺伝情報研究室 中村 保一 教授による「DDBJ と NIG スーパーコンピュータ」をお送りします。 約23分です。
オリジナルのYouTube動画はこちらからご覧いただけます。
また、講習会資料についてはこちらからご覧ください。","講演,DDBJ,スパコン","https://youtu.be/G2FOimIIcD0","http://togotv.dbcls.jp/movie/160110genome_yn1.mov","http://doi.org/10.7875/togotv.2016.010","http://togotv.dbcls.jp/images/20160110_0.jpg","160110genome_yn1.mov","thumbnail/20160110_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1019","","togotv.2016.009","","20160109","Mass Submission System の紹介 (第33回 DDBJing 講習会 in 東京)","本日の統合TVは、DNA Data Bank of Japan (DDBJ) からの「投稿TV」として、2015年11月11日(水)に行われた第33回 DDBJing 講習会 in 東京 から DNA Data Bank of Japan (DDBJ) 李 慶範 アノテータによる「Mass Submission System の紹介」をお送りします。 約43分です。
オリジナルのYouTube動画はこちらからご覧いただけます。
また、講習会資料についてはこちらからご覧ください。","講演,DDBJing,DDBJ,登録方法","https://youtu.be/5Z0VroRzPpo","http://togotv.dbcls.jp/movie/160109DDBJing33_li.mov","http://doi.org/10.7875/togotv.2016.009","http://togotv.dbcls.jp/images/20160109_0.jpg","160109DDBJing33_li.mov","thumbnail/20160109_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1018","","togotv.2016.008","","20160108","DDBJ Pipeline講習:NGS公共データベースを利用したDNA多型解析ワークフローの実習 (第33回 DDBJing 講習会 in 東京)","本日の統合TVは、DNA Data Bank of Japan (DDBJ) からの「投稿TV」として、2015年11月11日(水)に行われた第33回 DDBJing 講習会 in 東京 から 国立遺伝学研究所 大量遺伝情報研究室 望月 孝子 特任研究員 による「DDBJ Pipeline講習:NGS公共データベースを利用したDNA多型解析ワークフローの実習」をお送りします。 約35分です。
オリジナルのYouTube動画はこちらからご覧いただけます。
また、講習会資料についてはこちらからご覧ください。","実習,DDBJing,NGS,データベース,多型,ワークフロー,DDBJ","https://youtu.be/ZCO0QZkon6U","http://togotv.dbcls.jp/movie/160108DDBJing33_mochizuki.mov","http://doi.org/10.7875/togotv.2016.008","http://togotv.dbcls.jp/images/20160108_0.jpg","160108DDBJing33_mochizuki.mov","thumbnail/20160108_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1017","","togotv.2016.007","","20160107","Japanese Genotype-phenotype Archive の紹介 (第33回 DDBJing 講習会 in 東京)","本日の統合TVは、DNA Data Bank of Japan (DDBJ) からの「投稿TV」として、2015年11月11日(水)に行われた第33回 DDBJing 講習会 in 東京 から DNA Data Bank of Japan (DDBJ) 児玉 悠一 アノテータによる「Japanese Genotype-phenotype Archive の紹介」をお送りします。 約21分です。
オリジナルのYouTube動画はこちらからご覧いただけます。
また、講習会資料についてはこちらからご覧ください。","講演,DDBJ,NBDC,データベース","https://youtu.be/eUGu7yStbLM","http://togotv.dbcls.jp/movie/160107DDBJing33_kodama.mov","http://doi.org/10.7875/togotv.2016.007","http://togotv.dbcls.jp/images/20160107_0.jpg","160107DDBJing33_kodama.mov","thumbnail/20160107_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1016","","togotv.2016.006","","20160106","BioProject, BioSample, DDBJ Sequence Read Archive の紹介 (第33回 DDBJing 講習会 in 東京)","本日の統合TVは、DNA Data Bank of Japan (DDBJ) からの「投稿TV」として、2015年11月11日(水)に行われた第33回 DDBJing 講習会 in 東京 から DNA Data Bank of Japan (DDBJ) 福田 亜沙美 アノテータによる「BioProject, BioSample, DDBJ Sequence Read Archive の紹介」をお送りします。 約35分です。
オリジナルのYouTube動画はこちらからご覧いただけます。
また、講習会資料についてはこちらからご覧ください。","講演,DDBJing,DDBJ","https://youtu.be/24IsQNm-9_M","http://togotv.dbcls.jp/movie/160106DDBJing33_fukuda.mov","http://doi.org/10.7875/togotv.2016.006","http://togotv.dbcls.jp/images/20160106_0.jpg","160106DDBJing33_fukuda.mov","thumbnail/20160106_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1015","","togotv.2016.005","","20160105","NGSを用いたジェノタイピングを様々な解析に用いるには? ~高密度SNPデータ解析の処方箋~ (第33回 DDBJing 講習会 in 東京)","本日の統合TVは、DNA Data Bank of Japan (DDBJ) からの「投稿TV」として、2015年11月11日(水)に行われた第33回 DDBJing 講習会 in 東京 から 東京大学大学院農学生命科学研究科 生産・環境生物学専攻 生物測定学研究室 鐘ヶ江 弘美 特任研究員による「NGSを用いたジェノタイピングを様々な解析に用いるには? ~高密度SNPデータ解析の処方箋~」をお送りします。 約43分です。
オリジナルのYouTube動画はこちらからご覧いただけます。
また、講習会資料についてはこちらからご覧ください。
","講演,DDBJing,NGS,多型","https://youtu.be/YDawRifdCr8","http://togotv.dbcls.jp/movie/160105DDBJing33_kanegae.mov","http://doi.org/10.7875/togotv.2016.005","http://togotv.dbcls.jp/images/20160105_0.jpg","160105DDBJing33_kanegae.mov","thumbnail/20160105_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1014","","togotv.2016.004","","20160104","ゲノムワイド多型を利用した遺伝解析の実際 (第33回 DDBJing 講習会 in 東京)","本日の統合TVは、DNA Data Bank of Japan (DDBJ) からの「投稿TV」として、2015年11月11日(水)に行われた第33回 DDBJing 講習会 in 東京 から かずさDNA研究所 先端研究部 植物ゲノム・遺伝学研究室 白澤 健太 主任研究員による「ゲノムワイド多型を利用した遺伝解析の実際」をお送りします。 約44分です。
オリジナルのYouTube動画はこちらからご覧いただけます。
また、講習会資料についてはこちらからご覧ください。
","講演,DDBJing,ゲノム,多型","https://youtu.be/AL8gkTCLj_w","http://togotv.dbcls.jp/movie/160104DDBJing33_sirasawa.mov","http://doi.org/10.7875/togotv.2016.004","http://togotv.dbcls.jp/images/20160104_0.jpg","160104DDBJing33_sirasawa.mov","thumbnail/20160104_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1013","","togotv.2016.003","","20160103","DDBJ と NIG Supercomputer の紹介、大量配列情報解析 (第33回 DDBJing 講習会 in 東京)","本日の統合TVは、DNA Data Bank of Japan (DDBJ) からの「投稿TV」として、2015年11月11日(水)に行われた第33回 DDBJing 講習会 in 東京 から 国立遺伝学研究所 大量遺伝情報研究室 神沼 英里 助教による「DDBJ と NIG Supercomputer の紹介、大量配列情報解析」をお送りします。 約45分です。
オリジナルのYouTube動画はこちらからご覧いただけます。
また、講習会資料についてはこちらからご覧ください。
","講演,DDBJ,スパコン,配列解析,DDBJing","https://youtu.be/asfyRVon4Hg","http://togotv.dbcls.jp/movie/160103DDBJing33_kaminuma.mov","http://doi.org/10.7875/togotv.2016.003","http://togotv.dbcls.jp/images/20160103_0.jpg","160103DDBJing33_kaminuma.mov","thumbnail/20160103_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1012","","togotv.2016.002","","20160102","GeneSetDBで遺伝子解析とエンリッチメント解析を行う","GeneSetDBは、オークランド大学バイオインフォマティクス研究所で運営されているフリーの遺伝子セット解析用データベースです。ヒト、マウス、ラットを対象にしたPathway、Disease/Phenotype、Drug/Chemical、Genes Regulations、Gene Ontologyの5つのサブクラスからなる26種のデータベースから構成されており、既存の遺伝子セット解析ツールと比べ、特に医学・薬学分野に関連した情報を解析対象にすることができるのが特長です。
今回は、GeneSetDBを使って、ユーザの興味ある遺伝子がどのデータベースの遺伝子セットに含まれているかを検索する方法と、ユーザが用意した遺伝子セットについて生物学的解釈をするためのエンリッチメント解析を行う方法を紹介します。","遺伝子,発現解析,パスウェイ解析,データベース","https://youtu.be/qqF19PaURsA","http://togotv.dbcls.jp/movie/160102genesetdb.mov","http://doi.org/10.7875/togotv.2016.002","http://togotv.dbcls.jp/images/20160102_0.jpg","160102genesetdb.mov","thumbnail/20160102_0.jpg","1. 遺伝子/遺伝子セットの検索 (00:37)","2. 検索対象のデータベースを絞り込む (01:57)","3. 検索結果のリストをダウンロードする (02:29)","4. エンリッチメント解析を行う (02:50)","5. エンリッチメント解析結果の見方 (03:50)","6. エンリッチメント解析結果のヒートマップ表示 (04:56)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1011","","togotv.2016.001","","20160101","創薬現場におけるPDBの多角的活用"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、アステラス製薬 白井 宏樹 専任理事 による「創薬現場におけるPDBの多角的活用」をお送りします。約18分です。","講演,トーゴーの日,PDB","https://youtu.be/cC_DiLM5UaQ","http://togotv.dbcls.jp/movie/160101togo2015_shirai.mov","http://doi.org/10.7875/togotv.2016.001","http://togotv.dbcls.jp/images/20160101_0.jpg","160101togo2015_shirai.mov","thumbnail/20160101_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1010","","togotv.2015.150","","20151231","原因不明および原因既知の疾患の解析を実施するにあたって〜ゲノムからの視点"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、長崎大学 原爆後障害医療研究所 吉浦 孝一郎 教授 による「原因不明および原因既知の疾患の解析を実施するにあたって〜ゲノムからの視点」をお送りします。約18分です。","講演,トーゴーの日","https://youtu.be/ybnpH22R0qI","http://togotv.dbcls.jp/movie/151231togo2015_yoshiura.mov","http://doi.org/10.7875/togotv.2015.150","http://togotv.dbcls.jp/images/20151231_0.jpg","151231togo2015_yoshiura.mov","thumbnail/20151231_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1009","","togotv.2015.149","","20151230","統合データベースの利用と求めること ウイルス学からの視点"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、北海道大学大学院 獣医学研究科 日尾野 隆大 氏 による「統合データベースの利用と求めること ウイルス学からの視点」をお送りします。約18分です。","講演,トーゴーの日","https://youtu.be/mD0oZNuZzP8","http://togotv.dbcls.jp/movie/151230togo2015_hiono.mov","http://doi.org/10.7875/togotv.2015.149","http://togotv.dbcls.jp/images/20151230_0.jpg","151230togo2015_hiono.mov","thumbnail/20151230_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1008","","togotv.2015.148","","20151229","日本医療研究開発機構のミッション: 研究リソースと情報の共有によるイノベーション"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、国立研究開発法人 日本医療研究開発機構(AMED) 末松 誠 理事長 による「日本医療研究開発機構のミッション: 研究リソースと情報の共有によるイノベーション」をお送りします。約35分です。","講演,トーゴーの日","https://youtu.be/BGOJSL4ZHZM","http://togotv.dbcls.jp/movie/151229togo2015_suematsu.mov","http://doi.org/10.7875/togotv.2015.148","http://togotv.dbcls.jp/images/20151229_0.jpg","151229togo2015_suematsu.mov","thumbnail/20151229_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1007","","togotv.2015.147","","20151228","困ったときはDBCLS/NBDCへ ~素人教育者による知の情報拠点の利用"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、徳島大学大学院 医歯薬学研究部 井本 逸勢 教授による「困ったときはDBCLS/NBDCへ ~素人教育者による知の情報拠点の利用」をお送りします。約13分です。","講演,トーゴーの日","https://youtu.be/67eS82Ae_Sg","http://togotv.dbcls.jp/movie/151228togo2015_imoto.mov","http://doi.org/10.7875/togotv.2015.147","http://togotv.dbcls.jp/images/20151228_0.jpg","151228togo2015_imoto.mov","thumbnail/20151228_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1006","","togotv.2015.146","","20151227","科学的可視化による因果関係の探索"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、京都大学 学術情報メディアセンター 小山田 耕二 教授による「科学的可視化による因果関係の探索」をお送りします。約20分です。","講演,トーゴーの日,可視化","https://youtu.be/fYLQkuastIM","http://togotv.dbcls.jp/movie/151227togo2015_koyamada.mov","http://doi.org/10.7875/togotv.2015.146","http://togotv.dbcls.jp/images/20151227_0.jpg","151227togo2015_koyamada.mov","thumbnail/20151227_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1005","","togotv.2015.145","","20151226","土壌の撹乱によるマイクロバイオームの変動"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、東北大学大学院 生命科学研究科 加藤 広海 研究員による「土壌の撹乱によるマイクロバイオームの変動」をお送りします。約20分です。","講演,トーゴーの日","https://youtu.be/dcinh2h2ip0","http://togotv.dbcls.jp/movie/151226togo2015_kato.mov","http://doi.org/10.7875/togotv.2015.145","http://togotv.dbcls.jp/images/20151226_0.jpg","151226togo2015_kato.mov","thumbnail/20151226_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1004","","togotv.2015.144","","20151225","データサイエンスと情報・システム研究機構の取り組み"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、情報・システム研究機構 北川源四郎 機構長 による「データサイエンスと情報・システム研究機構の取り組み」をお送りします。約41分です。","講演,トーゴーの日","https://youtu.be/Q-QyuLmGGdA","http://togotv.dbcls.jp/movie/151225togo2015_kitagawa.mov","http://doi.org/10.7875/togotv.2015.144","http://togotv.dbcls.jp/images/20151225_0.jpg","151225togo2015_kitagawa.mov","thumbnail/20151225_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1003","","togotv.2015.143","","20151224","生命動態情報と細胞・発生画像情報の統合"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、理化学研究所 生命システム研究センター 大浪 修一 チームリーダー による「生命動態情報と細胞・発生画像情報の統合」をお送りします。約16分です。","講演,トーゴーの日","https://youtu.be/kamdJ3UPm7k","http://togotv.dbcls.jp/movie/151224togo2015_onami.mov","http://doi.org/10.7875/togotv.2015.143","http://togotv.dbcls.jp/images/20151224_0.jpg","151224togo2015_onami.mov","thumbnail/20151224_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1002","","togotv.2015.142","","20151223","プロテオーム統合データベースjPOSTの構築"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、京都大学大学院 薬学研究科 石濱 泰 教授 による「プロテオーム統合データベースjPOSTの構築」をお送りします。約14分です。","講演,トーゴーの日,プロテオーム","https://youtu.be/xKpoftQJmJM","http://togotv.dbcls.jp/movie/151223togo2015_ishihama.mov","http://doi.org/10.7875/togotv.2015.142","http://togotv.dbcls.jp/images/20151223_0.jpg","151223togo2015_ishihama.mov","thumbnail/20151223_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1001","","togotv.2015.141","","20151222","KEGG MEDICUS:創薬から医療現場における利用"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、東京理科大学 薬学部 宮城島 利一 客員教授 による「KEGG MEDICUS:創薬から医療現場における利用」をお送りします。約20分です。","講演,トーゴーの日,KEGG","https://youtu.be/vTVh-28NZCE","http://togotv.dbcls.jp/movie/151222togo2015_miyagishima.mov","http://doi.org/10.7875/togotv.2015.141","http://togotv.dbcls.jp/images/20151222_0.jpg","151222togo2015_miyagishima.mov","thumbnail/20151222_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1000","","togotv.2015.140","","20151221","データサイエンス、人工知能からの生命科学への貢献"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、国立研究開発法人 産業技術総合研究所 人工知能研究センター 辻井 潤一 センター長 による「データサイエンス、人工知能からの生命科学への貢献」をお送りします。約41分です。","講演,トーゴーの日","https://youtu.be/2EN6pLyk-9Y","http://togotv.dbcls.jp/movie/151221togo2015_tujii.mov","http://doi.org/10.7875/togotv.2015.140","http://togotv.dbcls.jp/images/20151221_0.jpg","151221togo2015_tujii.mov","thumbnail/20151221_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"999","","togotv.2015.139","","20151220","日本におけるオープンサイエンスの推進~サイエンスの新たな飛躍の時代の幕開け~"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、総合科学技術・イノベーション会議 原山 優子 議員による「日本におけるオープンサイエンスの推進~サイエンスの新たな飛躍の時代の幕開け~」をお送りします。約39分です。","講演,トーゴーの日","https://youtu.be/eMEHpm-8S_U","http://togotv.dbcls.jp/movie/151220togo2015_harayama.mov","http://doi.org/10.7875/togotv.2015.139","http://togotv.dbcls.jp/images/20151220_0.jpg","151220togo2015_harayama.mov","thumbnail/20151220_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"998","","togotv.2015.138","","20151219","オープンライフサイエンスと統合データベース"," 本日の統合TVは、2015年10月5-6日に開催されたトーゴーの日シンポジウム2015 ~統合データベースとオープンライフサイエンス~ から、科学技術振興機構 バイオサイエンスデータベースセンター (NBDC) 高木 利久 センター長 による「オープンライフサイエンスと統合データベース」をお送りします。約21分です。","講演,トーゴーの日,NBDC","https://youtu.be/XjYeFvSAZ0s","http://togotv.dbcls.jp/movie/151219togo2015_takagi.mov","http://doi.org/10.7875/togotv.2015.138","http://togotv.dbcls.jp/images/20151219_0.jpg","151219togo2015_takagi.mov","thumbnail/20151219_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"997","","togotv.2015.137","","20151218","Lightning talks (5min each) @BioHackathon2015"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this video, 12 speakers make presentations entitled as follows. (1:01:35)
- Kieron Taylor, RDF - a composable Ensembl
- Tazro Ohta, Semantic Wet Lab: Publishing Protocols and Workflow
- Robert Hoehndorf, Aber-OWL update
- Naohisa Goto, BioRuby
- Shuichi Kawashima, NBDC RDF portal
- Yasunori Yamamoto, D2RQ mapper that gives RDF powers to RDB
- Hidemasa Bono, AOE: All of publicly available gene expression data
- Takeshi Kawashima, The Necessity of tools for finding out associations between phylogenetic and geologic data in modern genomic-scale phylogenetics
- Arto Bendiken, Dydra - cloud hosting for RDF & SPARQL
- Peter Amstutz, A brief introduction to Arvados, Common Workflow Language, and Schema Salad
- Colin Hercus, NovoAlign, novoSort, novoLR and novoWorx
- Mark Thompson, Open, reusable knowledge graph annotations
","講演,English,BioHackathon,RDF","https://youtu.be/x7oPi-CQNA4","http://togotv.dbcls.jp/movie/151218BH2015_LT.mov","http://doi.org/10.7875/togotv.2015.137","http://togotv.dbcls.jp/images/20151218_0.jpg","151218BH2015_LT.mov","thumbnail/20151218_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"996","","togotv.2015.136","","20151217","LODQA: natural language interface to SPARQL endpoints"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Jin-Dong Kim (Database Center for Life Science, Japan) makes a presentation entitled ""LODQA: natural language interface to SPARQL endpoints"". (11:29)
","講演,English,BioHackathon","https://youtu.be/q785L0GUPzk","http://togotv.dbcls.jp/movie/151217BH2015_JDkim.mov","http://doi.org/10.7875/togotv.2015.136","http://togotv.dbcls.jp/images/20151217_0.jpg","151217BH2015_JDkim.mov","thumbnail/20151217_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"995","","togotv.2015.135","","20151216","Europe PubMed Central and Linked Data"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Jee-Hyub Kim (European Bioinformatics Institute, UK) makes a presentation entitled ""Europe PubMed Central and Linked Data"". (10:36)
","講演,English,BioHackathon","https://youtu.be/akaifOM8KtQ","http://togotv.dbcls.jp/movie/151216BH2015_JHkim.mov","http://doi.org/10.7875/togotv.2015.135","http://togotv.dbcls.jp/images/20151216_0.jpg","151216BH2015_JHkim.mov","thumbnail/20151216_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"994","","togotv.2015.134","","20151215","Text Mining Tools for Assisting Literature Curation"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Chih-Hsuan Wei (National Institute of Health, USA) makes a presentation entitled ""Text Mining Tools for Assisting Literature Curation"". (9:03)
","講演,English,BioHackathon","https://youtu.be/a-GUrslhxmc","http://togotv.dbcls.jp/movie/151215BH2015_wei.mov","http://doi.org/10.7875/togotv.2015.134","http://togotv.dbcls.jp/images/20151215_0.jpg","151215BH2015_wei.mov","thumbnail/20151215_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"993","","togotv.2015.133","","20151214","Semantics for experimental protocols"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Alexander García (Universidad Politécnica de Madrid, Spain) makes a presentation entitled ""Semantics for experimental protocols"". (14:32)
","講演,English,BioHackathon,RDF","https://youtu.be/E5u6kSY13Q8","http://togotv.dbcls.jp/movie/151214BH2015_garcia.mov","http://doi.org/10.7875/togotv.2015.133","http://togotv.dbcls.jp/images/20151214_0.jpg","151214BH2015_garcia.mov","thumbnail/20151214_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"992","","togotv.2015.132","","20151213","BioInformatics and Semantic Web, what do they need a bioinformatician and a biomedical researcher?"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Raoul Bonnal (Isituto Nazionale Genetica Molecolare “Romeo ed Enrica Invernizzi”, Italy) makes a presentation entitled ""BioInformatics and Semantic Web, what do they need a bioinformatician and a biomedical researcher?"". (6:34)
","講演,English,BioHackathon,RDF","https://youtu.be/4nMt-qQs2BE","http://togotv.dbcls.jp/movie/151213BH2015_bonnal.mov","http://doi.org/10.7875/togotv.2015.132","http://togotv.dbcls.jp/images/20151213_0.jpg","151213BH2015_bonnal.mov","thumbnail/20151213_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"991","","togotv.2015.131","","20151212","Writing FOSS software for big biology"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Pjotr Prins (Director of Genenetwork.org, The Netherlands) makes a presentation entitled ""Writing FOSS software for big biology"". (5:10)
","講演,English,BioHackathon","https://youtu.be/k0D2oREJO1M","http://togotv.dbcls.jp/movie/151212BH2015_prins.mov","http://doi.org/10.7875/togotv.2015.131","http://togotv.dbcls.jp/images/20151212_0.jpg","151212BH2015_prins.mov","thumbnail/20151212_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"990","","togotv.2015.130","","20151211","Bionode - Modular and universal bioinformatics"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Bruno Vieira (Queen Mary University of London, UK) makes a presentation entitled ""Bionode - Modular and universal bioinformatics"". (7:54)
","講演,English,BioHackathon","https://youtu.be/9MoI1IFRdvc","http://togotv.dbcls.jp/movie/151211BH2015_vieira.mov","http://doi.org/10.7875/togotv.2015.130","http://togotv.dbcls.jp/images/20151211_0.jpg","151211BH2015_vieira.mov","thumbnail/20151211_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"989","","togotv.2015.129","","20151210","The Human Genome Variation Map Pilot Project"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Benedict Paten (University of California, Santa Cruz, USA) makes a presentation entitled ""The Human Genome Variation Map Pilot Project"". (14:33)
","講演,English,BioHackathon","https://youtu.be/Rvnr7IijTCg","http://togotv.dbcls.jp/movie/151210BH2015_paten.mov","http://doi.org/10.7875/togotv.2015.129","http://togotv.dbcls.jp/images/20151210_0.jpg","151210BH2015_paten.mov","thumbnail/20151210_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"988","","togotv.2015.128","","20151209","YacMa: a semantic web platform for biological knowledge integration"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Erick Antezana (Norwegian University of Science and Technology, Norway & Bayer CropScience, Belgium) makes a presentation entitled ""YacMa: a semantic web platform for biological knowledge integration"". (14:15)
","講演,English,BioHackathon","https://youtu.be/vr-5eqMFNtQ","http://togotv.dbcls.jp/movie/151209BH2015_antezana.mov","http://doi.org/10.7875/togotv.2015.128","http://togotv.dbcls.jp/images/20151209_0.jpg","151209BH2015_antezana.mov","thumbnail/20151209_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"987","","togotv.2015.127","","20151208","Identifiers.org updates"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Nick Juty (European Bioinformatics Institute, UK) makes a presentation entitled ""Identifiers.org updates"". (10:53)
","講演,English,BioHackathon","https://youtu.be/XrKVFb8T854","http://togotv.dbcls.jp/movie/151208BH2015_juty.mov","http://doi.org/10.7875/togotv.2015.127","http://togotv.dbcls.jp/images/20151208_0.jpg","151208BH2015_juty.mov","thumbnail/20151208_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"986","","togotv.2015.126","","20151207","Network Analysis and Linking for Bio2RDF"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Michel Dumontier (Stanford University School of Medicine, USA) makes a presentation entitled ""Network Analysis and Linking for Bio2RDF"". (14:40)
","講演,English,BioHackathon,RDF","https://youtu.be/eSfQ-YZgLUA","http://togotv.dbcls.jp/movie/151207BH2015_dumontier.mov","http://doi.org/10.7875/togotv.2015.126","http://togotv.dbcls.jp/images/20151207_0.jpg","151207BH2015_dumontier.mov","thumbnail/20151207_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"985","","togotv.2015.125","","20151206","Introduction of DisGeNET, a discovery platform for the dynamical exploration of human diseases and their genes"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Núria Queralt Rosinach (Institut Hospital del Mar d'Investigacions Mèdiques, Spain) makes a presentation entitled ""Introduction of DisGeNET, a discovery platform for the dynamical exploration of human diseases and their genes"". (9:57)
","講演,English,BioHackathon","https://youtu.be/pNMLQFary2I","http://togotv.dbcls.jp/movie/151206BH2015_rosinach.mov","http://doi.org/10.7875/togotv.2015.125","http://togotv.dbcls.jp/images/20151206_0.jpg","151206BH2015_rosinach.mov","thumbnail/20151206_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"984","","togotv.2015.124","","20151205","Phenotype Ontologies and their role in understanding rare disorders"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Tudor Groza (Kinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Australia) makes a presentation entitled ""Phenotype Ontologies and their role in understanding rare disorders"". (12:02)
","講演,English,BioHackathon","https://youtu.be/Km6J1FLWemg","http://togotv.dbcls.jp/movie/151205BH2015_groza.mov","http://doi.org/10.7875/togotv.2015.124","http://togotv.dbcls.jp/images/20151205_0.jpg","151205BH2015_groza.mov","thumbnail/20151205_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"983","","togotv.2015.123","","20151204","MeSH RDF 2015"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Gang Fu (National Center for Biotechnology Information, USA) makes a presentation entitled ""MeSH RDF 2015"". (13:59)
","講演,English,BioHackathon,RDF","https://youtu.be/yB4oNQJqZDU","http://togotv.dbcls.jp/movie/151204BH2015_fu.mov","http://doi.org/10.7875/togotv.2015.123","http://togotv.dbcls.jp/images/20151204_0.jpg","151204BH2015_fu.mov","thumbnail/20151204_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"982","","togotv.2015.122","","20151203","GlycoRDF ontology"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Thomas Luetteke (Justus-Liebig University Giessen, Germany) makes a presentation entitled ""GlycoRDF ontology"". (12:23)
","講演,English,BioHackathon,RDF","https://youtu.be/vmWCkZQmJto","http://togotv.dbcls.jp/movie/151203BH2015_luetteke.mov","http://doi.org/10.7875/togotv.2015.122","http://togotv.dbcls.jp/images/20151203_0.jpg","151203BH2015_luetteke.mov","thumbnail/20151203_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"981","","togotv.2015.121","","20151202","Applying RDF/SPARQL to ortholog databases"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Hirokazu Chiba (National Institute for Basic Biology, Japan) makes a presentation entitled ""Applying RDF/SPARQL to ortholog databases"". (4:03)
","講演,English,BioHackathon,RDF","https://youtu.be/f8dgftqZKAo","http://togotv.dbcls.jp/movie/151202BH2015_chiba.mov","http://doi.org/10.7875/togotv.2015.121","http://togotv.dbcls.jp/images/20151202_0.jpg","151202BH2015_chiba.mov","thumbnail/20151202_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"980","","togotv.2015.120","","20151201","Efforts in the semantic standardization of orthology content"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Jesualdo Tomás Fernández-Breis (University of Murcia, Spain) makes a presentation entitled ""Efforts in the semantic standardization of orthology content"". (6:01)
","講演,English,BioHackathon,RDF","https://youtu.be/siCcb1fG4Cs","http://togotv.dbcls.jp/movie/151201BH2015_fernandez.mov","http://doi.org/10.7875/togotv.2015.120","http://togotv.dbcls.jp/images/20151201_0.jpg","151201BH2015_fernandez.mov","thumbnail/20151201_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"979","","togotv.2015.119","","20151130","PubChemRDF examples, potential applications, and future directions"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Evan Bolton (National Center for Biotechnology Information, USA) makes a presentation entitled ""PubChemRDF examples, potential applications, and future directions"". (14:28)
","講演,English,BioHackathon,RDF","https://youtu.be/gdpj-eIwTOc","http://togotv.dbcls.jp/movie/151130BH2015_bolton.mov","http://doi.org/10.7875/togotv.2015.119","http://togotv.dbcls.jp/images/20151130_0.jpg","151130BH2015_bolton.mov","thumbnail/20151130_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"978","","togotv.2015.118","","20151129","UniProt SPARQL in production"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Jerven Bolleman (Swiss Institute of Bioinformatics, Switzerland) makes a presentation entitled ""UniProt SPARQL in production"". (13:55)
","講演,English,BioHackathon,RDF","https://youtu.be/pLZo04flNTs","http://togotv.dbcls.jp/movie/151129BH2015_bolleman.mov","http://doi.org/10.7875/togotv.2015.118","http://togotv.dbcls.jp/images/20151129_0.jpg","151129BH2015_bolleman.mov","thumbnail/20151129_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"977","","togotv.2015.117","","20151128","Research at the Atomic Bomb Disease Institute, Nagasaki University"," DBCLS BioHackathon 2015 was held at the Nagasaki University and the Luke Plaza Hotel in Nagasaki, Japan.
Public symposium of the BioHackathon 2015 was also held at the Ryojun Kaikan, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan, on Sep 13 (Sun).
In this talk, Hiroyuki Mishima (Nagasaki University, Japan) makes a presentation entitled ""Research at the Atomic Bomb Disease Institute, Nagasaki University"". (12:39)
","講演,English,BioHackathon","https://youtu.be/0uQD1xn-dOw","http://togotv.dbcls.jp/movie/151128BH2015_mishima.mov","http://doi.org/10.7875/togotv.2015.117","http://togotv.dbcls.jp/images/20151128_0.jpg","151128BH2015_mishima.mov","thumbnail/20151128_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"976","","togotv.2015.116","","20151127","次世代シーケンサー(NGS)から遺伝子発現を見るためのホップ&ステップ@AJACS伊予","本日の統合TVは、2015年9月25日に開催された統合データベース講習会:AJACS伊予から、理化学研究所 ライフサイエンス技術基盤研究センター 原 雄一郎 研究員による「次世代シーケンサー(NGS)から遺伝子発現を見るためのホップ&ステップ」をお送りします。約87分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,NGS,配列解析,発現解析,可視化,データベース,ウェブツール,R,Bioconductor,RNA-seq","https://youtu.be/m9BibPsTEHk","http://togotv.dbcls.jp/movie/151127AJACS57_hara.mov","http://doi.org/10.7875/togotv.2015.116","http://togotv.dbcls.jp/images/20151127_0.jpg","151127AJACS57_hara.mov","thumbnail/20151127_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"975","","togotv.2015.115","","20151126","次世代シーケンサー(NGS)と関連するデータベース・ツール@AJACS伊予","本日の統合TVは、2015年9月25日に開催された統合データベース講習会:AJACS伊予から、ライフサイエンス統合データベースセンター 仲里 猛留 による「次世代シーケンサー(NGS)と関連するデータベース・ツール」をお送りします。約91分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,NGS,データベース","https://youtu.be/gHWPiSG4_Y0","http://togotv.dbcls.jp/movie/151126AJACS57_nakazato.mov","http://doi.org/10.7875/togotv.2015.115","http://togotv.dbcls.jp/images/20151126_0.jpg","151126AJACS57_nakazato.mov","thumbnail/20151126_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"974","","togotv.2015.114","","20151125","NBDCの紹介とNBDCが提供するサービス@AJACS伊予","本日の統合TVは、2015年9月25日に開催された統合データベース講習会:AJACS伊予から、バイオサイエンスデータベースセンター (NBDC) 櫛田 達矢 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約78分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,NBDC,データベース","https://youtu.be/yAivkahpoRg","http://togotv.dbcls.jp/movie/151125AJACS57_kushida.mov","http://doi.org/10.7875/togotv.2015.114","http://togotv.dbcls.jp/images/20151125_0.jpg","151125AJACS57_kushida.mov","thumbnail/20151125_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"973","","togotv.2015.113","","20151124","塩基配列解析のためのデータベース・ウェブツール@AJACS伊予","本日の統合TVは、2015年9月25日に開催された統合データベース講習会:AJACS伊予から、ライフサイエンス統合データベースセンター 内藤 雄樹 による「塩基配列解析のためのデータベース・ウェブツール」をお送りします。約75分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,塩基配列,配列解析,データベース,ウェブツール","https://youtu.be/A15kG7XFyWQ","http://togotv.dbcls.jp/movie/151124AJACS57_naito.mov","http://doi.org/10.7875/togotv.2015.113","http://togotv.dbcls.jp/images/20151124_0.jpg","151124AJACS57_naito.mov","thumbnail/20151124_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"972","","togotv.2015.112","","20151123","R/Bioconductorを使った遺伝子発現解析入門@AJACS津軽","本日の統合TVは、2015年9月3-4日に開催された統合データベース講習会:AJACS津軽から、ライフサイエンス統合データベースセンター 坊農 秀雅 による「R/Bioconductorを使った遺伝子発現解析入門」をお送りします。約79分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,発現解析,データベース,ウェブツール,R,Bioconductor","https://youtu.be/3mBgzhZs2BI","http://togotv.dbcls.jp/movie/151123AJACS56_bono2.mov","http://doi.org/10.7875/togotv.2015.112","http://togotv.dbcls.jp/images/20151123_0.jpg","151123AJACS56_bono2.mov","thumbnail/20151123_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"971","","togotv.2015.111","","20151122","遺伝子発現データベースの使い方@AJACS津軽","本日の統合TVは、2015年9月3-4日に開催された統合データベース講習会:AJACS津軽から、ライフサイエンス統合データベースセンター 坊農 秀雅 による「次世代シーケンサーデータの取り扱いと疾患ゲノム解析の基礎」をお送りします。約59分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,発現解析,データベース,ウェブツール","https://youtu.be/bRb23Rg4ibA","http://togotv.dbcls.jp/movie/151122AJACS56_bono1.mov","http://doi.org/10.7875/togotv.2015.111","http://togotv.dbcls.jp/images/20151122_0.jpg","151122AJACS56_bono1.mov","thumbnail/20151122_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"970","","togotv.2015.110","","20151121","次世代シーケンサーデータの取り扱いと疾患ゲノム解析の基礎@AJACS津軽","本日の統合TVは、2015年9月3-4日に開催された統合データベース講習会:AJACS津軽から、岩手医科大学 いわて東北メディカル・メガバンク機構 清水 厚志 教授 による「次世代シーケンサーデータの取り扱いと疾患ゲノム解析の基礎」をお送りします。約98分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,NGS,ゲノム,疾患情報","https://youtu.be/gRFzIz2bcGo","http://togotv.dbcls.jp/movie/151121AJACS56_shimizu.mov","http://doi.org/10.7875/togotv.2015.110","http://togotv.dbcls.jp/images/20151121_0.jpg","151121AJACS56_shimizu.mov","thumbnail/20151121_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"969","","togotv.2015.109","","20151120","メタボローム解析の紹介@AJACS津軽","本日の統合TVは、2015年9月3-4日に開催された統合データベース講習会:AJACS津軽から、かずさDNA研究所 櫻井 望 チーム長 による「メタボローム解析の紹介」をお送りします。約78分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,メタボローム,データベース","https://youtu.be/I_wsRz8ej6o","http://togotv.dbcls.jp/movie/151120AJACS56_sakurai.mov","http://doi.org/10.7875/togotv.2015.109","http://togotv.dbcls.jp/images/20151120_0.jpg","151120AJACS56_sakurai.mov","thumbnail/20151120_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"968","","togotv.2015.108","","20151119","生体分子の立体構造データに触れてみる@AJACS津軽","本日の統合TVは、2015年9月3-4日に開催された統合データベース講習会:AJACS津軽から、大阪大学 蛋白質研究所 鈴木 博文 特任研究員 による「生体分子の立体構造データに触れてみる」をお送りします。約85分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,構造解析,アミノ酸,タンパク質,データベース,ウェブツール,PDB","https://youtu.be/0X8RwP_wjWY","http://togotv.dbcls.jp/movie/151119AJACS56_suzuki.mov","http://doi.org/10.7875/togotv.2015.108","http://togotv.dbcls.jp/images/20151119_0.jpg","151119AJACS56_suzuki.mov","thumbnail/20151119_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"967","","togotv.2015.107","","20151118","NBDCの紹介とNBDCが提供するサービス@AJACS津軽","本日の統合TVは、2015年9月3-4日に開催された統合データベース講習会:AJACS津軽から、バイオサイエンスデータベースセンター (NBDC) / ライフサイエンス統合データベースセンター (DBCLS) 箕輪 真理 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約73分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,NBDC,データベース","https://youtu.be/3r2M4JE-gq4","http://togotv.dbcls.jp/movie/151118AJACS56_minowa.mov","http://doi.org/10.7875/togotv.2015.107","http://togotv.dbcls.jp/images/20151118_0.jpg","151118AJACS56_minowa.mov","thumbnail/20151118_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"966","","togotv.2015.106","","20151117","【NGSハンズオン2015】NGS解析 - ChIP-seqの基礎実習(初級)"," 本日の統合TVは、2015年7月22日(水) ~ 8月6日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 次世代シークエンサ(NGS)ハンズオン講習会 から、理化学研究所 情報基盤センター 森岡 勝樹 センター研究員による「NGS解析 - ChIP-seqの基礎実習(初級)」をお送りします。約5時間7分です。
講義資料PDF (約2MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。
","実習,AJACS,NGS,ChIP-seq,可視化,パイプライン,NGS速習・ハンズオン","https://youtu.be/ogbRkDC72tU","http://togotv.dbcls.jp/movie/151117NGS_morioka.mov","http://doi.org/10.7875/togotv.2015.106","http://togotv.dbcls.jp/images/20151117_0.jpg","151117NGS_morioka.mov","thumbnail/20151117_0.jpg","1. はじめに (0:03:59)","2. ChiP-Seq とは (0:14:40)","3. ChiP-seq で得られるデータの例 (0:23:59)","4. ChiP-seq の目的 (0:25:50)","5. ChiP-Seq データ解析の流れ (0:27:09)","6. Peak Call (0:28:40)","7. 1. SICER (0:32:10)","8. 2. MACS (0:35:24)","9. 3. F-Seq (0:38:41)","10. Peak call の難しさ (0:43:25)","11. Peak call の極意 (0:45:16)","12. Peak Call 法の種類 (0:52:09)","13. Peak Call 後の解析 (0:52:46)","14. HOMER (0:54:25)","15. NGS plot (0:57:08)","16. galaxy & sratailer (0:59:57)","17. 本日のデータ (1:01:55)","18. 実習環境とファイルの準備 (1:03:53)","19. 本日の実習の流れ (suimye/NGS_handson2015 · GitHub) (1:24:30)","20. 初心者コースの概要 (1:36:07)","21. 今回のデータの取得とクオリティ check (1:36:54)","22. bowtie2 を使ったゲノムへのマッピング (1:58:40)","23. データの変換操作とクレンジング (クレンジング、sam から bam ファイルへの変換) (2:14:21)","24. PCR duplicates について (2:37:55)","25. データの変換操作とクレンジング (ゲノム上の repeat 領域を除く) (2:50:40)","26. アライメント後のデータの可視化 (3:05:30)","27. Peak Call に基づくタンパク質-DNA 結合領域の検出 (3:52:33)","28. タンパク質-DNA結合領域 (Peak) の配列解析 (4:38:09)","29. PhysBinder について (4:46:50)","30. motif discovery analysis について (4:58:00)","31. Ngsplot の biolinux8 での install と解析 (5:03:16)","","","","","","","","","","","","","","","","","","","","","","","",""
"965","","togotv.2015.105","","20151116","【NGSハンズオン2015】NGS解析 - RNA-seq、カウントデータ取得以降の統計解析"," 本日の統合TVは、2015年7月22日(水) ~ 8月6日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 次世代シークエンサ(NGS)ハンズオン講習会 から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「NGS解析 - RNA-seq、カウントデータ取得以降の統計解析」をお送りします。約2時間8分です。
講義資料PDF (約3MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。","実習,AJACS,NGS,RNA-seq,発現解析,パイプライン,NGS速習・ハンズオン","https://youtu.be/SAnok1PDdD0","http://togotv.dbcls.jp/movie/151116NGS_kadota.mov","http://doi.org/10.7875/togotv.2015.105","http://togotv.dbcls.jp/images/20151116_0.jpg","151116NGS_kadota.mov","thumbnail/20151116_0.jpg","1. クラスタリング (0:01:34)","2. クラスタリング〜入力ファイル& R を起動〜 (0:02:30)","3. クラスタリング〜作業ディレクトリの変更&作業ディレクトリと入力ファイルの確認〜 (0:04:31)","4. クラスタリング〜コピペで実行、実行結果、出力ファイル〜 (0:06:32)","5. クラスタリング〜clusterSample 関数〜 (0:09:35)","6. クラスタリング〜結果の解釈〜 (0:35:07)","7. 発現変動解析(2 群間比較)〜HS vs. RM〜 (0:39:20)","8. 発現変動解析(2 群間比較)〜サブセット抽出〜 (0:43:32)","9. 発現変動解析(2 群間比較)〜FDR〜 (0:46:28)","10. 発現変動解析(2 群間比較)〜DEG 数の見積もり〜 (0:50:58)","11. 発現変動解析(2 群間比較)〜樹形図と一致〜 (0:58:17)","12. 発現変動解析(2 群間比較)〜M-A plot〜 (1:00:30)","13. 発現変動解析(2 群間比較)〜DEG 検出結果〜 (1:06:25)","14. Tips: log の世界 (1:18:25)","15. 分布やモデル (1:20:47)","16. おさらい&「HS vs. PT」 (1:25:21)","17. 「HS vs. RM」と「HS vs. PT」の比較 (1:27:24)","18. サンプル間類似度 (1:31:33)","19. 2 群間比較(DEG がほとんどない同一群の場合) (1:40:22)","20. 倍率変化を用いた場合 (1:49:45)","21. 発現変動解析:3 群間比較など (1:57:42)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"964","","togotv.2015.104","","20151115","【NGSハンズオン2015】NGS解析 - RNA-seq"," 本日の統合TVは、2015年7月22日(水) ~ 8月6日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 次世代シークエンサ(NGS)ハンズオン講習会 から、アメリエフ株式会社 山口 昌男 氏 による「NGS解析 - RNA-seq」をお送りします。約2時間52分です。
講義資料PDF (2015.09.03版; 約4MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。","実習,AJACS,NGS,RNA-seq,発現解析,パイプライン,NGS速習・ハンズオン","https://youtu.be/QUAxFOMMI6M","http://togotv.dbcls.jp/movie/151115NGS_yamaguchi.mov","http://doi.org/10.7875/togotv.2015.104","http://togotv.dbcls.jp/images/20151115_0.jpg","151115NGS_yamaguchi.mov","thumbnail/20151115_0.jpg","1. RNA-seq とは (0:00:40)","2. RNA-seq 解析:パイプライン (0:02:20)","3. RNA-seq 解析でできること (0:04:22)","4. RNA-seq 解析:データ〜酵母のゲノムのリファレンス取得&配列確認〜 (0:06:07)","5. RNA-seq 解析:データ〜DDBJ DRA について〜 (0:10:50)","6. RNA-seq 解析:データ〜シーケンスデータ取得〜 (0:20:50)","7. RNA-seq 解析:データ〜シーケンスデータを確認〜 (0:28:17)","8. RNA-seq 解析:クオリティコントロール〜シーケンスデータのクオリティを確認〜 (0:29:40)","9. 応用)PolyA/T tail の混入 (0:43:00)","10. RNA-seq 解析:クオリティコントロール〜最初の 1 塩基を削除〜 (0:43:27)","11. RNA-seq 解析:クオリティコントロール〜PolyA/T tail を除去 1〜 (0:51:59)","12. 応用)アダプタ配列を除去するソフト (0:57:48)","13. RNA-seq 解析:クオリティコントロール〜PolyA/T tail を除去 2 &質疑応答〜 (0:59:23)","14. RNA-seq 解析:クオリティコントロール〜クオリティの低いリードを除外〜 (1:08:51)","15. RNA-seq 解析:クオリティコントロール〜クリーニング結果の確認〜 (1:19:13)","16. RNA-seq 解析:マッピング〜TopHat の使い方を確認〜 (1:28:30)","17. RNA-seq 解析:マッピング〜マッピング〜 (1:37:15)","18. RNA-seq 解析:マッピング〜マッピング率〜 (1:48:30)","19. ポイント)TopHat のアルゴリズム (1:53:00)","20. RNA-seq 解析:マッピング〜マッピング結果の可視化〜 (1:53:26)","21. ポイント)遺伝子の発現量 ≠ 遺伝子上にマップされたリード数 (2:10:53)","22. RNA-seq 解析:発現定量〜Cufflinks の使い方を確認〜 (2:14:40)","23. RNA-seq 解析:発現定量〜発現量を計算〜 (2:18:58)","24. 応用)サンプル間比較 (2:29:06)","25. 質疑応答 (2:48:09)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"963","","togotv.2015.103","","20151114","【NGSハンズオン2015】NGS解析 - ゲノムReseq、変異解析"," 本日の統合TVは、2015年7月22日(水) ~ 8月6日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 次世代シークエンサ(NGS)ハンズオン講習会 から、アメリエフ株式会社 山口 昌男 氏 による「NGS解析 - ゲノムReseq、変異解析」をお送りします。約4時間42分です。
講義資料PDF (2015.09.02版; 約3MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。","実習,AJACS,NGS,Reseq,多型,変異解析,パイプライン,NGS速習・ハンズオン","https://youtu.be/eS4xxESx5uY","http://togotv.dbcls.jp/movie/151114NGS_yamaguchi.mov","http://doi.org/10.7875/togotv.2015.103","http://togotv.dbcls.jp/images/20151114_0.jpg","151114NGS_yamaguchi.mov","thumbnail/20151114_0.jpg","1. 本講義にあたって (0:01:49)","2. 講義内容 (0:04:30)","3. Reseq 解析:検出可能な変異 (0:05:52)","4. Reseq 解析:パイプライン (0:11:20)","5. Reseq 解析:データ〜酵母のゲノムのリファレンス取得〜 (0:18:17)","6. 応用)ヒトリファレンスの話 (0:40:50)","7. Reseq 解析:データ〜リファレンスのインデックスを作成〜 (0:53:30)","8. 質疑応答 (1:12:39)","9. マシンのスペックについて (1:18:29)","10. command.zip (1:24:23)","11. Reseq 解析:データ〜シーケンスデータ取得〜 (1:27:50)","12. Reseq 解析:データ〜シーケンスデータを確認〜 (1:33:18)","13. Reseq 解析:クオリティコントロール〜シーケンスデータのクオリティ確認〜 (1:41:01)","14. 応用)とあるシーケンスデータの実例 (1:50:19)","15. Reseq 解析:クオリティコントロール〜fastq_quality_filter の使い方 & fastq ファイルについて〜 (1:52:48)","16. 応用)クオリティコントロールの順番も大切 (2:18:57)","17. Reseq 解析:マッピング〜Bwa mem コマンドの使い方を確認〜 (2:24:09)","18. Reseq 解析:マッピング〜マッピング〜 (2:35:13)","19. Reseq 解析:マッピング〜SAM を BAM に変換〜 (2:43:35)","20. Reseq 解析:マッピング〜ソートとインデキシング〜 (2:47:52)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"962","","togotv.2015.102","","20151113","【NGSハンズオン2015】NGS解析 - NGS解析基礎"," 本日の統合TVは、2015年7月22日(水) ~ 8月6日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 次世代シークエンサ(NGS)ハンズオン講習会 から、アメリエフ株式会社 山口 昌男 氏 による「NGS解析 - NGS解析基礎」をお送りします。約4時間33分です。
講義資料PDF (2015.09.02版; 約3MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。","実習,AJACS,NGS,UNIX,可視化,NGS速習・ハンズオン","https://youtu.be/xXGxO5l9u8M","http://togotv.dbcls.jp/movie/151113NGS_yamaguchi.mov","http://doi.org/10.7875/togotv.2015.102","http://togotv.dbcls.jp/images/20151113_0.jpg","151113NGS_yamaguchi.mov","thumbnail/20151113_0.jpg","1. 講義内容 (0:03:40)","2. ファイル形式〜NGS 解析でよく使われるファイル形式〜 (0:04:35)","3. ファイル形式 | fastq (0:06:24)","4. ファイル形式 | bam/sam (0:15:24)","5. ファイル形式 | vcf (0:41:27)","6. ファイル形式 | bed (0:54:26)","7. ファイル形式 | fasta (1:06:01)","8. データの入手の仕方 (1:14:16)","9. データの可視化〜Integrative Genomics Viewer (IGV)〜 (1:20:34)","10. データの可視化 | インデックスの作成 (1:34:00)","11. データの可視化 | インデックスの作成〜IGV の場合〜 (1:46:30)","12. 質問「登録されていないゲノムデータを IGV で使用したい場合は?」 (1:58:46)","13. データのクオリティチェック〜FastQC〜 (2:02:01)","14. 質問「データの使える使えないの基準は?」&その他質疑応答 (2:26:13)","15. マッピング (2:39:30)","16. マッピング〜Reseq の場合〜 (2:51:31)","17. マッピング〜RNA-seq の場合〜 (2:59:34)","18. マッピング〜Methyl-seq、その他の場合〜 (3:09:57)","19. アセンブリング (3:12:45)","20. 質問「作業時間とその作業に必要なメモリの見積もりは?」 (3:19:00)","21. 休憩時間中の質疑応答、その他 (Vague) (3:29:30)","22. Velvet 〜初めて Velvet を使ってみる〜 (3:38:49)","23. Velvet 〜velveth〜 (3:47:58)","24. Velvet 〜velvetg〜 (3:55:05)","25. Velvet 〜Velvet に必要なメモリ〜 (3:59:11)","26. Velvet 〜Velvet を GUI で動かす (Vague を使用)〜 (4:03:12)","27. Velvet 〜Vague の実行〜 (4:10:12)","28. Velvet 〜Vague の実行結果〜 (4:24:32)","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"961","","togotv.2015.101","","20151112","【NGSハンズオン2015】データ解析環境R - Bioconductorの利用法"," 本日の統合TVは、2015年7月22日(水) ~ 8月6日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 次世代シークエンサ(NGS)ハンズオン講習会 から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「データ解析環境R - Bioconductorの利用法」をお送りします。約4時間46分です。
講義資料PDF (2015.07.31版; 約7MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。","実習,AJACS,R,Bioconductor,プログラミング,環境設定,NGS速習・ハンズオン","https://youtu.be/zO0awM47yUU","http://togotv.dbcls.jp/movie/151112NGS_kadota.mov","http://doi.org/10.7875/togotv.2015.101","http://togotv.dbcls.jp/images/20151112_0.jpg","151112NGS_kadota.mov","thumbnail/20151112_0.jpg","1. 前講義 (R基礎) の訂正〜Overrepresented seq. (例題4)〜 (0:00:20)","2. 本日の講義内容 (0:03:48)","3. パッケージ (0:04:40)","4. R 本体とパッケージの関係 (0:17:43)","5. CRAN と Bioconductor (0:19:10)","6. R 本体 と Bioconductor のバージョンアップ (0:21:57)","7. パッケージのインストール (0:26:58)","8. Bioconductor 概観 (0:30:13)","9. Bioconductor 概観〜library(XXX)〜 (0:55:02)","10. ゲノム配列パッケージ (BSgenome) 利用の意義 (1:02:19)","11. BSgenome (1:03:46)","12. BSgenome 〜質問「R での検索方法は?」〜 (1:10:41)","13. BSgenome 〜installed.genomes()〜 (1:22:15)","14. ヒトゲノム情報パッケージの解析〜BSgenome 例題9〜 (1:26:33)","15. ヒトゲノム情報パッケージの解析〜BSgenome 例題10〜 (1:43:42)","16. ヒトゲノム情報パッケージの解析〜BSgenome 例題9・26番目以降の配列について〜 (1:46:18)","17. プロモーター配列取得 (1:49:35)","18. プロモーター配列取得〜例題1〜 (1:52:45)","19. プロモーター配列取得〜例題3〜 (1:56:55)","20. プロモーター配列取得〜質問「自分達のサンプルを調べたい場合の方法は?」〜(2:00:33)","21. プロモーター配列取得〜Tips: sessionInfo〜 (2:02:34)","22. プロモーター配列取得〜パッケージのインストール〜 (2:06:01)","23. プロモーター配列取得〜バージョンの違い〜 (2:08:52)","24. プロモーター配列取得〜FASTA 形式ファイルと GFF3 形式ファイル〜(2:35:06) ","25. プロモーター配列取得〜例題7〜 (2:37:49)","26. 質問「プロモーター配列の取得方法の違いについて」(2:52:19)","27. プロモーター配列取得〜データの型〜 (2:58:59)","28. library(help=パッケージ名) (3:14:01)","29. パッケージ概観 (3:18:21)","30. プロモーター配列取得〜例題7の目的をおさらい〜 (3:24:47)","31. 残りのコードを概説 (3:25:46)","32. プロモーター配列取得〜データの型〜 (3:28:08)","33. プロモーター配列取得〜例題8〜(3:33:56) ","34. 遺言(3:36:09) ","35. R を用いた検証例 (例題7、例題14) (3:39:19)","36. Linux を用いた検証例 (3:42:11)","37. 質疑応答 (3:46:10)","38. FASTQ ファイルの各種解析 (Linux と R を相補的に活用) (3:48:36)","39. FASTQ ファイル解析 (3:49:44)","40. FastQC と QuasR の実行結果 (3:51:11)","41. FastQC マニュアル (4:02:06)","42. FastQC (4:04:06)","43. FastQC のオプション (デフォルトと--nogroup あり) の違いによる Kmer Content 項目の結果の違い (4:12:35)","44. 様々な状況証拠を収集 (4:16:25)","45. QuasR (トリム前とトリム後) (4:21:06)","46. 末端塩基のトリム (例題4) (4:25:34)","47. 例外処理 (4:29:34)","48. R での検証 (4:40:01)","","","","","","",""
"960","","togotv.2015.100","","20151111","【NGSハンズオン2015】データ解析環境R - R基礎"," 本日の統合TVは、2015年7月22日(水) ~ 8月6日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 次世代シークエンサ(NGS)ハンズオン講習会 から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「データ解析環境R - R基礎」をお送りします。約4時間29分です。
講義資料PDF (2015.07.27版; 約6.7MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。","実習,AJACS,R,プログラミング,環境設定,NGS速習・ハンズオン","https://youtu.be/Vwfid2tR8dI","http://togotv.dbcls.jp/movie/151111NGS_kadota.mov","http://doi.org/10.7875/togotv.2015.100","http://togotv.dbcls.jp/images/20151111_0.jpg","151111NGS_kadota.mov","thumbnail/20151111_0.jpg","1. おさらい (0:05:33)","2. 解析基礎2 (「基本的な利用法」PDF 中) (0:07:38)","3. 作業ディレクトリとフォルダ中のファイルの確認 (0:09:56)","4. コマンド群のコピペと実行結果 (0:15:17)","5. コードの中身の説明 (0:21:48)","6. R コード中の色の使い分けの説明とそれを踏まえた応用例 (0:24:02)","7. ありがちなミス (0:36:54)","8. コード内部の説明〜読み込み〜 (0:45:40)","9. コード内部の説明〜行列要素へのアクセス〜 (0:53:08)","10. Tips: 関数とオプション (1:05:31)","11. Tips: タブ補完 (1:07:11)","12. Tips: table 関数 (1:09:21)","13. Mac の標準テキストエディタについて (1:13:20)","14. Tips: ソート (1:17:11)","15. Tips: is.element 関数 (1:22:24)","16. Tips: ""二重クォーテーション"" (1:27:22)","17. 目的をおさらい (1:28:55)","18. 例題1、例題12、例題13 (1:38:42)","19. リアル RNA-seq カウントデータ (数値行列データ) (1:44:31)","20. カウントデータ (1:45:51)","21. 数値行列 (1:47:15)","22. xls形式ファイルもOK (1:51:35)","23. #以降は無視される (1:55:47)","24. 作業フォルダと解析ファイルの存在確認、及び詳細情報の確認 (1:56:42)","25. Linux の場合 (1:59:45)","26. 入力ファイルの読み込み確認 (2:01:08)","27. head 関数 (2:16:40)","28. colnames 関数 (2:23:00)","29. paste 関数 (2:24:08)","30. length は要素数 (2:26:14)","31. 列の並びがイマイチ (subsetting の具体的なテクニック) (2:29:31)","32. 列名で並び替え (2:32:50)","33. cbind 関数 (2:36:00)","34. cbind 関数 (2:36:00)","35. 例題41 (データの概観) (2:42:10)","36. colSums, range 関数 (2:51:50)","37. apply, min, max 関数 (2:54:12)","38. colMeans, rowMeans 関数 (2:57:08)","39. summary 関数 (3:00:06)","40. 各種の補正 (3:05:14)","41. TCC パッケージを用いたクラスタリング (例題7) (3:08:39)","42. サブセット抽出と整形 (例題42) (3:20:27)","43. R各種パッケージ (中級):代表的なパッケージの利用法 (3:27:01)","44. 基本情報取得 (コンティグ数、配列長、N50、GC含量) (3:29:43)","45. 基本情報取得 〜N50 とは〜 (3:34:12)","46. 基本情報取得 〜N50 とは〜 (3:34:12)","47. 基本情報取得 〜コード内部の説明〜 (3:36:33)","48. 基本情報取得 〜Tips: 条件判定〜 (3:43:58)","49. 任意の領域の切り出し (3:49:38)","50. 任意の領域の切り出し〜Tips: 関数のオプション〜 (3:51:31)","51. 任意の領域の切り出し〜Tips: 関数の使用法〜 (4:00:04)","52. 任意の領域の切り出し〜FastQCと同じ結果を得る〜 (4:04:29)","53. 任意の領域の切り出し〜Overrepresented seq. (例題4)〜 (4:07:16)","54. GC 含量計算部分の説明 (4:11:01)","55. GC 含量計算部分の説明〜配列ごとの GC 含量を計算〜 (4:25:36)"
"959","","togotv.2015.099","","20151110","【NGSハンズオン2015】UNIX/Linuxとスクリプト言語 - Python入門"," 本日の統合TVは、2015年7月22日(水) ~ 8月6日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 次世代シークエンサ(NGS)ハンズオン講習会 から、アメリエフ株式会社 服部 恵美 氏 による「UNIX/Linuxとスクリプト言語 - Python入門」をお送りします。約4時間59分です。
講義資料PDF (2015.09.02版; 約2MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。","実習,AJACS,UNIX,Linux,プログラミング,Python,環境設定,NGS速習・ハンズオン","https://youtu.be/FQabMlA5esM","http://togotv.dbcls.jp/movie/151110NGS_hattori.mov","http://doi.org/10.7875/togotv.2015.099","http://togotv.dbcls.jp/images/20151110_0.jpg","151110NGS_hattori.mov","thumbnail/20151110_0.jpg","1. Python が導く明るい未来 (0:04:39)","2. 本講義の内容 (0:12:11)","3. Python のバージョンと実習環境準備 (0:13:13)","4. Python と Perl の比較 (0:22:57)","5. 実習1 Python スクリプト・py1.py を書いて実行 (0:34:38)","6. 演算子 (0:36:28)","7. 条件付き処理 (0:43:48)","8. 繰り返し処理 (0:45:31)","9. リストとタプル (0:52:15)","10. 実習2 & 実習3 Python スクリプト・py2.py, py3.py を書いて実行 (リスト & タプルを作る) (1:12:51)","11. コメント (1:26:01)","12. 辞書 (1:32:46)","13. 実習4 Python スクリプト・py4.py を書いて実行 (辞書) (1:36:43)","14. 値の整形 (1:56:01)","15. Python のお作法:PEP8 (2:08:36)","16. 関数 (2:18:24)","17. 実習5 Python スクリプト・py5.py を書いて実行 (関数) (2:20:45)","18. vi 使用時にタブ入力を簡単にする方法 (2:26:00)","19. 実習6 Python スクリプト・py6.py を書いて実行 (2:30:49)","20. ライブラリ (2:40:20)","21. 実習7 Python スクリプト・py7.py を書いて実行 (2:45:53)","22. シバン (2:52:33)","23. BioPython (2:55:04)","24. ファイル入出力 (3:00:00)","25. 最終課題 Python スクリプト・py8.py を書いて実行 (3:02:47)","26. BioLinux でどのようなメソッドが使えるかを調べる方法 (3:17:35)","27. 大文字と小文字間の変換方法 (3:23:22)","28. 最終課題の答え合わせ (3:28:26)","29. オブジェクト指向 (3:32:21)","30. 実習9 Python スクリプト・py9.py を書いて実行 & Perl 入門の最終課題を Python で書く (3:37:50)","31. 参考資料の訂正 (4:04:18)","32. vi 講座 (4:07:05)","33. vi 講座 (矩形選択の方法) (4:34:52)","34. vi 講座 (検索方法) (4:37:51)","35. vi 講座 (置換方法) (4:40:37)","36. vi 講座 (部分コピーの方法) (4:44:40)","","","","","","","","","","","","","","","","","","",""
"958","","togotv.2015.098","","20151109","【NGSハンズオン2015】UNIX/Linuxとスクリプト言語 - Perl入門"," 本日の統合TVは、2015年7月22日(水) ~ 8月6日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 次世代シークエンサ(NGS)ハンズオン講習会 から、アメリエフ株式会社 服部 恵美 氏 による「UNIX/Linuxとスクリプト言語 - Perl入門」をお送りします。約5時間31分です。
講義資料PDF (2015.09.02版; 約2MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。","実習,AJACS,UNIX,Linux,プログラミング,Perl,環境設定,NGS速習・ハンズオン","https://youtu.be/Tx0qmuHTbyw","http://togotv.dbcls.jp/movie/151109NGS_hattori.mov","http://doi.org/10.7875/togotv.2015.098","http://togotv.dbcls.jp/images/20151109_0.jpg","151109NGS_hattori.mov","thumbnail/20151109_0.jpg","1. Perl が導く明るい未来 (0:05:35)","2. Perl とは (0:08:21)","3. Perl スクリプトの作成と実行 (0:18:02)","4. 実習1 Perl スクリプト・perl1.pl の作成 (print) (0:29:05)","5. 変数について (0:36:59)","6. 実習2 Perl スクリプト・perl2.pl を書いて実行 (変数) (0:41:52)","7. 配列について (1:03:34)","8. 実習3 Perl スクリプト・perl3.pl を書いて実行 (配列) (1:08:50)","9. コマンドライン引数について (1:43:33)","10. 実習4 Perl スクリプト・perl4.pl を書いて実行 (コマンドライン引数) (1:45:37)","11. ハッシュについて (1:52:00)","12. 実習5 Perl スクリプト・perl5.pl を書いて実行 (ハッシュ) (1:57:24)","13. 配列とハッシュの違い (2:05:53)","14. 条件付き処理について (2:07:48)","15. 実習6 Perl スクリプト・perl6.pl を書いて実行 (条件付き処理) (2:15:19)","16. 繰り返し処理について (2:42:53)","17. 実習7 Perl スクリプト・perl7.pl を書いて実行 (繰り返し処理) (3:01:00)","18. 繰り返し処理でハッシュにアクセス (3:17:30)","19. 繰り返し処理で使用する next, last (3:24:53)","20. スコープについて (3:30:20)","21. ファイル入出力について (3:33:00)","22. バグを見つけやすくする (3:43:13)","23. 実習8 Perl スクリプト・perl8-1.pl と perl8-2.pl を書いて実行 (バグを見つけやすくする) (3:44:31)","24. コメントについて (3:50:45)","25. シバンについて (3:51:09)","26. 正規表現について (3:52:37)","27. 実習9 Perl スクリプト・perl9.pl を書いて実行 (ファイルを読み込み、条件通りに出力) (4:27:22)","28. 最終課題の説明 & 質疑応答 (5:05:19)","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"957","","togotv.2015.097","","20151108","【NGSハンズオン2015】UNIX/Linuxとスクリプト言語 - シェルスクリプト入門"," 本日の統合TVは、2015年7月22日(水) ~ 8月6日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 次世代シークエンサ(NGS)ハンズオン講習会 から、アメリエフ株式会社 服部 恵美 氏 による「UNIX/Linuxとスクリプト言語 - シェルスクリプト入門」をお送りします。約4時間3分です。
講義資料PDF (2015.09.02版; 約2MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。","実習,AJACS,UNIX,Linux,プログラミング,シェルスクリプト,環境設定,NGS速習・ハンズオン","https://youtu.be/eISlS3VsI_I","http://togotv.dbcls.jp/movie/151108NGS_hattori.mov","http://doi.org/10.7875/togotv.2015.097","http://togotv.dbcls.jp/images/20151108_0.jpg","151108NGS_hattori.mov","thumbnail/20151108_0.jpg","1. シェルスクリプトが導く明るい未来 (0:04:15)","2. シェルスクリプトとは (0:11:05)","3. 実習環境の設定 (0:18:10)","4. テストデータの取得 (0:24:00)","5. 本講義の達成目標 (0:32:00)","6. 実習 1 〜シェルスクリプト・test1.sh を書いて実行 (0:36:22)","7. 実習 2 〜シェルスクリプト・test2.sh を書いて実行 (変数を使用) (1:03:49)","8. 変数のありがたみがわかる例 (1:13:08)","9. 引数について (1:16:50)","10. 実習 3 〜シェルスクリプト・test3.sh を書いて実行 (引数を使用) (1:19:15)","11. ディレクトリを作成する (1:30:53)","12. 実習 4 〜シェルスクリプト・test4.sh を書いて実行 (ディレクトリを作成) (1:31:30)","13. 条件付き処理について (1:50:16)","14. 実習 5 〜シェルスクリプト・test5.sh を書いて実行 (条件付き処理) (1:55:10)","15. 比較演算子について (2:08:23)","16. 複数の条件付き処理について(2:11:50)","17. 繰り返し処理について(2:21:16)","18. 実習 6 〜シェルスクリプト・test6.sh を書いて実行 (繰り返し処理を使ってディレクトリを3つ作成) (2:38:12)","19. 便利なコマンド(2:48:19)","20. 実習 7 〜シェルスクリプト・test7.sh を書いて実行 (標準出力と標準エラー出力) (2:54:40)","21. # について (コメント & シバン)(3:05:06)","22. cdbtools を使った最終課題 (シェルスクリプト・test8.sh を書いて実行) (3:17:35)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"956","","togotv.2015.096","","20151107","【NGSハンズオン2015】UNIX/Linuxとスクリプト言語 - Linux基礎"," 本日の統合TVは、2015年7月22日(水) ~ 8月6日(木)に開催された、バイオインフォマティクス人材育成カリキュラム 次世代シークエンサ(NGS)ハンズオン講習会 から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「UNIX/Linuxとスクリプト言語 - Linux基礎」をお送りします。約3時間52分です。
講義資料PDF (2015.07.21版; 約10MB)
関連ウェブサイトのリンク情報などを含む資料ページはこちらです。
この動画と講習資料が同時に見られる「AJACS講習会資料」ページはこちらです。","実習,AJACS,UNIX,Linux,プログラミング,環境設定,NGS速習・ハンズオン","https://youtu.be/CHhCusRCrS8","http://togotv.dbcls.jp/movie/151107NGS_kadota.mov","http://doi.org/10.7875/togotv.2015.096","http://togotv.dbcls.jp/images/20151107_0.jpg","151107NGS_kadota.mov","thumbnail/20151107_0.jpg","1. Linux (コマンド) 習得の意義 (0:05:00)","2. テストデータ取得〜wgetの場合〜 (0:09:00)","3. テストデータ取得〜ドラッグ&ドロップの場合〜 (0:33:02)","4. テストデータ取得〜共有フォルダ経由の場合〜 (0:50:05)","5. Integrative Genomics Viewer (IGV) のインストール (1:03:22)","6. findコマンド (1:26:21)","7. 日本乳酸菌学会誌のNGS連載第4回のW7-1以降 (1:28:51)","8. FastQC (ver. 0.10.1) preinstalled in Bio-Linux 8 (1:29:28)","9. FastQC のバージョン情報 (2:26:51)","10. FastQC (ver. 0.10.1) の実行結果 (2:28:57)","11. FastQC (ver. 0.11.3) (2:30:50)","12. FastQC (ver. 0.11.3) : ダウンロード (2:33:00)","13. FastQC (ver. 0.11.3) : 解凍 (2:44:52)","14. FastQC (ver. 0.11.3) : パス (のイントロ) (2:50:14)","15. FastQC (ver. 0.11.3) : 正規表現 (2:55:41)","16. FastQC (ver. 0.11.3) : パスを通す (3:06:48)","17. FastQC ver. 0.11.3 と ver. 0.10.1 の違い (3:24:05)","18. Genome Analysis Toolkit (GATK) の取得 (3:32:15)","19. Bio-Linux8のovaファイル (3:46:17)","","","
","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"955","","togotv.2015.095","","20151106","文献情報サービスRefWorksで文献管理を行う"," RefWorksは、研究成果や電子リソースから収集した学術情報を蓄積・管理し、それらを共有したり、情報発信するためのウェブサービスです。本動画では、RefWorksの基本的な使い方である、文献検索と保存、フォルダの整理、引用文献の作成について説明します。","文献検索,文章執筆,ウェブツール,情報収集","https://youtu.be/e2t0oWSZdKo","http://togotv.dbcls.jp/movie/151106_refworks.mov","http://doi.org/10.7875/togotv.2015.095","http://togotv.dbcls.jp/images/20151106_0.jpg","151106_refworks.mov","thumbnail/20151106_0.jpg","1. アカウントを作成する(0分36秒)","2. 文献を検索、保存する(1分17秒)","3. フォルダを作成する(5分15秒)","4. 引用文献を作成する(6分05秒)","5. 引用文献のフォーマットを追加する(7分09秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"954","","togotv.2015.094","","20151030","Blast2GOを使ってシーケンス配列の機能アノテーションを行う"," Blast2GOは、シーケンス配列の機能アノテーションを行うツールです。大量のシーケンスデータに関しても、マウスの操作だけで様々なアノテーションや、統計解析をすることができます。
本動画では、サンプル配列を使って、Blast2GOの基本的な使い方を説明します。","遺伝子,アミノ酸,配列解析,発現解析,可視化,ソフトウェア","https://youtu.be/nWf097ntrC0","http://togotv.dbcls.jp/movie/151030_Blast2GO.mov","http://doi.org/10.7875/togotv.2015.094","http://togotv.dbcls.jp/images/20151030_0.jpg","151030_Blast2GO.mov","thumbnail/20151030_0.jpg","1. Blast2GOのダウンロード (0分41秒)","2. blast、interproscanによる配列類似性検索 (2分54秒)","3. マッピング (5分12秒)","4. アノテーション (5分29秒)","5. エンリッチメント解析 (8分44秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"953","","togotv.2015.093","","20151013","Googleサイトの使い方 (研究会・勉強会用ホームページを簡単に作成する)","Googleサイトは、Google 社が提供するホームページを簡単に作ることができる無料Webサービスです。研究会や勉強会用のホームページを作成したい場合に便利です。ワンクリックでページを作成でき、HTML を使わずに、レイアウトやページデザインを簡単にカスタマイズできます。ホームページの共有設定を制限すれば、限られたメンバーだけでセミナー議事録などを情報共有することもできます。
今回は、研究会のウェブサイト作成を例に、基本的な設定方法やカスタマイズについて紹介します。","Google,環境設定,ウェブツール","https://youtu.be/fDf3dEfAxnI","http://togotv.dbcls.jp/movie/151013_Google_sites.mov","http://doi.org/10.7875/togotv.2015.093","http://togotv.dbcls.jp/images/20151013_0.jpg","151013_Google_sites.mov","thumbnail/20151013_0.jpg","1. 今回の作成見本 (0分29秒)","2. Googleサイトの作成 (0分42秒)","3. レイアウトの変更 (1分52秒)","4. 書式の変更 (2分00秒)","5. リンクの挿入 (2分35秒)","6. 画像の挿入 (2分52秒)","7. Googleカレンダーの挿入 (3分32秒)","8. Googleフォームの挿入 (3分58秒)","9. ページの追加 (4分35秒)","10. サイトの設定変更 (5分31秒)","11. サイトの公開 (5分59秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"952","","togotv.2015.092","","20151010","パスウェイデータベースの紹介@AJACS米子","本日の統合TVは、2015年8月4日に開催された統合データベース講習会:AJACS米子から、ライフサイエンス統合データベースセンター (DBCLS) 片山 俊明 による「パスウェイデータベースの紹介」をお送りします。約91分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,パスウェイ解析,発現解析,遺伝子,可視化,ウェブツール","https://youtu.be/4f9Rgb47ngo","http://togotv.dbcls.jp/movie/151010AJACS55_tktym.mov","http://doi.org/10.7875/togotv.2015.092","http://togotv.dbcls.jp/images/20151010_0.jpg","151010AJACS55_tktym.mov","thumbnail/20151010_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"951","","togotv.2015.091","","20151009","遺伝子発現データベース・解析ツールの使い方@AJACS米子","本日の統合TVは、2015年8月4日に開催された統合データベース講習会:AJACS米子から、ライフサイエンス統合データベースセンター (DBCLS) 小野 浩雅 による「遺伝子発現データベース・解析ツールの使い方」をお送りします。約105分です。講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,発現解析,データベース,ウェブツール","https://youtu.be/DInQROKNAhQ","http://togotv.dbcls.jp/movie/151009AJACS55_hono.mov","http://doi.org/10.7875/togotv.2015.091","http://togotv.dbcls.jp/images/20151009_0.jpg","151009AJACS55_hono.mov","thumbnail/20151009_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"950","","togotv.2015.090","","20151008","次世代シークエンサーを用いたがん細胞のオミクス解析@AJACS米子","本日の統合TVは、2015年8月4日に開催された統合データベース講習会:AJACS米子から、国立研究開発法人 国立がん研究センター 先端医療開発センター (NCC-EPOC) 鈴木 絢子 研究員 による「次世代シーケンサーを用いたがん細胞のオミクス解析」をお送りします。約85分です。講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,NGS,データベース,ウェブツール","https://youtu.be/YkizovcepjI","http://togotv.dbcls.jp/movie/151008AJACS55_suzuki.mov","http://doi.org/10.7875/togotv.2015.090","http://togotv.dbcls.jp/images/20151008_0.jpg","151008AJACS55_suzuki.mov","thumbnail/20151008_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"949","","togotv.2015.089","","20151007","NBDCの紹介とNBDCが提供するサービス@AJACS米子","本日の統合TVは、2015年8月4日に開催された統合データベース講習会:AJACS米子から、バイオサイエンスデータベースセンター (NBDC) / ライフサイエンス統合データベースセンター (DBCLS) 箕輪 真理 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約70分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,NBDC,データベース","https://youtu.be/yEBw7YUcSec","http://togotv.dbcls.jp/movie/151007AJACS55_minowa.mov","http://doi.org/10.7875/togotv.2015.089","http://togotv.dbcls.jp/images/20151007_0.jpg","151007AJACS55_minowa.mov","thumbnail/20151007_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"948","","togotv.2015.088","","20151006","Reactome を使ってパスウェイ情報を検索する 〜解析データのマッピング〜"," Reactome はヒトの生体中での反応やパスウェイを整備したデータベースです。それぞれの分野の専門家が編集しているため、信頼性の高いデータが得られます。代謝以外にもシグナル伝達や膜輸送、感染など様々なパスウェイが扱われています。DNA マイクロアレイやプロテオーム解析、メタボローム解析の結果を解釈する際にも利用できます。本動画はサンプルデータを用いて、ある分子がより深く関与するパスウェイを探したり、発現量をパスウェイにマッピングしたりする方法を説明します。","パスウェイ解析,発現解析,遺伝子,可視化,ウェブツール","https://youtu.be/SWn5XOhpCdY","http://togotv.dbcls.jp/movie/151006reactome_exp.mov","http://doi.org/10.7875/togotv.2015.088","http://togotv.dbcls.jp/images/20151006_0.jpg","151006reactome_exp.mov","thumbnail/20151006_0.jpg","1. 入力した分子がより深く関与するパスウェイを探す (0分52秒)","2. 発現量をパスウェイにマッピングする (3分20秒)","3. パスウェイ図を画像形式でダウンロードする (7分23秒)
","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"947","","togotv.2015.087","","20151005","Reactome を使ってパスウェイ情報を検索する 〜基本操作編〜"," Reactome はヒトの生体中での反応やパスウェイを整備したデータベースです。それぞれの分野の専門家が編集しているため、信頼性の高いデータが得られます。代謝以外にもシグナル伝達や膜輸送、感染など様々なパスウェイが扱われています。DNA マイクロアレイやプロテオーム解析、メタボローム解析の結果を解釈する際にも利用できます。今回はパスウェイの閲覧方法を紹介します。","パスウェイ解析,発現解析,遺伝子,可視化,ウェブツール","https://youtu.be/VDWPaI7VW7Y","http://togotv.dbcls.jp/movie/151005reactome_basic.mov","http://doi.org/10.7875/togotv.2015.087","http://togotv.dbcls.jp/images/20151005_0.jpg","151005reactome_basic.mov","thumbnail/20151005_0.jpg","1. Reactome とは (0分10秒)","2. Pathway Browser の使い方 (0分43秒)","3. 定の分子の詳細を見る (3分7秒)","4. パスウェイを読み解いてみる 〜ゴルジ・小胞体間の輸送の例〜 (5分54秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"946","","togotv.2015.086","","20151004","f-treeを使って家系図を描く","f-treeは、岩手医科大学・いわて東北メディカル・メガバンク機構が提供する家系図作成ソフトです。家族関係を入力するだけで、自動で家系図を描画することができます。家族の関係だけでなく、疾患の情報なども描きこむことができます。
ソフトのダウンロードはいわて東北メディカル・メガバンク機構 - いでん講習会から行うことができます。(※インストールにはAdobe AIRが必要です)","ソフトウェア,家系図,可視化","https://youtu.be/Dj_H0f7yY5M","http://togotv.dbcls.jp/movie/151004f_tree.mov","http://doi.org/10.7875/togotv.2015.086","http://togotv.dbcls.jp/images/20151004_0.jpg","151004f_tree.mov","thumbnail/20151004_0.jpg","1. Adobe AIRのインストール (0分18秒)","2. f-treeのインストール (1分4秒)","3. 家族情報を入力する (1分45秒)","4. 家系図の表示・保存 (5分5秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"945","","togotv.2015.085","","20151003","Cytoscapeを使ったデータの可視化@AJACS千里","本日の統合TVは、6月16-17に開催された統合データベース講習会:AJACS千里から、バイオサイエンスデータベースセンター (NBDC) 櫛田 達矢 による「Cytoscapeを使ったデータの可視化」をお送りします。約90分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,パスウェイ解析,発現解析,遺伝子,可視化,ソフトウェア","https://youtu.be/e7NTeo2o11Q","http://togotv.dbcls.jp/movie/151003AJACS54_kushida2.mov","http://doi.org/10.7875/togotv.2015.085","http://togotv.dbcls.jp/images/20151003_0.jpg","151003AJACS54_kushida2.mov","thumbnail/20151003_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"944","","togotv.2015.084","","20151002","微生物におけるNGSデータからゲノムアノテーションまで@AJACS千里","本日の統合TVは、6月16-17に開催された統合データベース講習会:AJACS千里から、国立遺伝学研究所大量遺伝情報研究室 藤澤 貴智 特任研究員による「微生物におけるNGSデータからゲノムアノテーションまで」をお送りします。約71分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,微生物,NGS,ゲノム","https://youtu.be/97964REldSg","http://togotv.dbcls.jp/movie/151002AJACS54_fujisawa.mov","http://doi.org/10.7875/togotv.2015.084","http://togotv.dbcls.jp/images/20151002_0.jpg","151002AJACS54_fujisawa.mov","thumbnail/20151002_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"943","","togotv.2015.083","","20151001","遺伝子発現DBの使い方@AJACS千里","本日の統合TVは、6月16-17に開催された統合データベース講習会:AJACS千里から、ライフサイエンス統合データベースセンター(DBCLS) 坊農 秀雅 による「遺伝子発現DBの使い方」をお送りします。約90分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,発現解析,データベース,ウェブツール","https://youtu.be/4bnKbbPaLUk","http://togotv.dbcls.jp/movie/151001AJACS54_bono2.mov","http://doi.org/10.7875/togotv.2015.083","http://togotv.dbcls.jp/images/20151001_0.jpg","151001AJACS54_bono2.mov","thumbnail/20151001_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"942","","togotv.2015.082","","20150930","文献情報関連のサービスを活用する@AJACS千里","本日の統合TVは、6月16-17に開催された統合データベース講習会:AJACS千里から、ライフサイエンス統合データベースセンター(DBCLS) 山本 泰智 による「文献情報関連サービスを活用する」をお送りします。約89分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,文献検索,文章執筆,辞書","https://youtu.be/7G20423AVTY","http://togotv.dbcls.jp/movie/150930AJACS54_yamamoto.mov","http://doi.org/10.7875/togotv.2015.082","http://togotv.dbcls.jp/images/20150930_0.jpg","150930AJACS54_yamamoto.mov","thumbnail/20150930_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"941","","togotv.2015.081","","20150928","次世代シーケンサー(NGS)と関連するデータベース・ツール@AJACS千里","本日の統合TVは、6月16-17に開催された統合データベース講習会:AJACS千里から、ライフサイエンス統合データベースセンター(DBCLS) 河野 信 による「次世代シーケンサー(NGS)と関連するデータベース・ツール」をお送りします。約88分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,NGS,データベース,ウェブツール","https://youtu.be/GYxDLkkAlJ0","http://togotv.dbcls.jp/movie/150928AJACS54_kawano.mov","http://doi.org/10.7875/togotv.2015.081","http://togotv.dbcls.jp/images/20150928_0.jpg","150928AJACS54_kawano.mov","thumbnail/20150928_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"940","","togotv.2015.080","","20150927","ゲノム配列DBの使い方@AJACS千里","本日の統合TVは、6月16-17に開催された統合データベース講習会:AJACS千里から、ライフサイエンス統合データベースセンター(DBCLS) 坊農 秀雅 による「ゲノム配列DBの使い方」をお送りします。約83分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,ゲノム,塩基配列,データベース","https://youtu.be/MKeLn2dGIP4","http://togotv.dbcls.jp/movie/150927AJACS54_bono1.mov","http://doi.org/10.7875/togotv.2015.080","http://togotv.dbcls.jp/images/20150927_0.jpg","150927AJACS54_bono1.mov","thumbnail/20150927_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"939","","togotv.2015.079","","20150926","NBDCの紹介とNBDCが提供するサービス@AJACS千里","本日の統合TVは、6月16-17に開催された統合データベース講習会:AJACS千里から、バイオサイエンスデータベースセンター(NBDC) 櫛田 達矢 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約88分です。
講習会で使用したテキスト・資料はこちらからご覧いただけます。","実習,AJACS,NBDC,データベース","https://youtu.be/ogN3gFyUbXE","http://togotv.dbcls.jp/movie/150926AJACS54_kushida1.mov","http://doi.org/10.7875/togotv.2015.079","http://togotv.dbcls.jp/images/20150926_0.jpg","150926AJACS54_kushida1.mov","thumbnail/20150926_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"938","","togotv.2015.078","","20150925","Googleフォームの使い方 (アンケートや募集フォームを簡単に作成する)","Google フォームは、Google 社が提供するアンケートや応募フォームが作れる無料Webサービスです。イベントの参加登録フォームや日程調整、ウェブサイトの問い合わせページにも応用可能で、とても便利です。カスタマイズが簡単で、画像やYouTube動画を追加して、高度なアンケートを作ることもできます。また、回収したアンケート結果は、Google スプレッドシートにて整理して集計ができ、グラフ化も簡単です。
今回は、Google フォームを使ったイベントの参加登録フォームの作成を例に、基本的なフォームの作成・送信方法と回答の収集について紹介します。","環境設定,ウェブツール,情報収集,Google","https://youtu.be/R4Q4tTqnQpY","http://togotv.dbcls.jp/movie/150925GoogleForm.mov","http://doi.org/10.7875/togotv.2015.078","http://togotv.dbcls.jp/images/20150925_0.jpg","150925GoogleForm.mov","thumbnail/20150925_0.jpg","1. イベントの参加登録フォームを作成する (0分37秒)","2. 質問内容を作成する (1分37秒)","3. 編集画面で質問内容を確認する (2分36秒)","4. 作成したフォームのURLを共有する (4分15秒)","5. フォームの回答結果を閲覧・整理する (4分50秒)","6. フォームの回答通知の設定方法 (5分30秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"937","","togotv.2015.077","","20150919","SraTailorを使ってChIP-seqデータを簡単に可視化する","SraTailor は、既報のChIP-seqデータを簡単な操作で、半自動的に可視化することができるソフトウェアです。
可視化したいデータのアクセッション番号を入力するだけで、NCBI Sequence Read Archive (SRA)などに代表される公共データベースから生データを取得し、各種計算を経て、IGVで閲覧可能なbigWig形式ファイルに変換する作業を自動化することができます。
SraTailorは、九州大学大学院 医学研究院 発生再生医学分野 沖 真弥 助教 により開発・運用されています。沖 助教 によるセミナー「既存のChIP-seqデータを全て可視化する」も統合TVにて公開されています。","NGS,発現解析,可視化,ゲノム,遺伝子,ソフトウェア,ChIP-seq","https://youtu.be/MYbYU5n7Rdc","http://togotv.dbcls.jp/movie/150919_SraTailor.mov","http://doi.org/10.7875/togotv.2015.077","http://togotv.dbcls.jp/images/20150919_0.jpg","150919_SraTailor.mov","thumbnail/20150919_0.jpg","1. SraTailorのダウンロード・インストール方法 (0分42秒)","2. BigWigファイルを作る方法 (2分47秒)","3. オプションの解説 (3分39秒)","4. 出力されたBigWigファイルをIGVで閲覧する (5分27秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"936","","togotv.2015.076","","20150918","ゲノム配列と蛋白質立体構造の統合的検索とモデリング@初めてのAll-in-one 合同講習会","本日の統合TVは、2015年7月18日に開催された初めてのAll-in-one 合同講習会から、大阪大学 蛋白質研究所 川端 猛 招聘准教授 による「ゲノム配列と蛋白質立体構造の統合的検索とモデリング」をお送りします。約74分です。","講演,PDB,データベース,ゲノム,構造解析,タンパク質,All-in-one合同講習会","https://youtu.be/UFLOaAjBKdg","http://togotv.dbcls.jp/movie/150918Allinone_kawabata.mov","http://doi.org/10.7875/togotv.2015.076","http://togotv.dbcls.jp/images/20150918_0.jpg","150918Allinone_kawabata.mov","thumbnail/20150918_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"935","","togotv.2015.075","","20150917","PDBデータの検索・見方@初めてのAll-in-one 合同講習会","本日の統合TVは、2015年7月18日に開催された初めてのAll-in-one 合同講習会から、大阪大学 蛋白質研究所 工藤 高裕 特任研究員 による「PDBデータの検索・見方」をお送りします。約34分です。 ","講演,PDB,データベース,PDB,PDBj,タンパク質,構造解析,All-in-one合同講習会","https://youtu.be/xO6sHLpWGZA","http://togotv.dbcls.jp/movie/150917Allinone_kudo.mov","http://doi.org/10.7875/togotv.2015.075","http://togotv.dbcls.jp/images/20150917_0.jpg","150917Allinone_kudo.mov","thumbnail/20150917_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"934","","togotv.2015.074","","20150916","遺伝研スーパーコンピュータシステムの紹介@初めてのAll-in-one 合同講習会","本日の統合TVは、2015年7月18日に開催された初めてのAll-in-one 合同講習会から、国立遺伝学研究所 遺伝子発現解析研究室 小笠原 理 助教 による「遺伝研スーパーコンピュータシステムの紹介」をお送りします。約31分です。","講演,DDBJ,スパコン,All-in-one合同講習会","https://youtu.be/p_FikxzF9Ms","http://togotv.dbcls.jp/movie/150916Allinone_ogasawara.mov","http://doi.org/10.7875/togotv.2015.074","http://togotv.dbcls.jp/images/20150916_0.jpg","150916Allinone_ogasawara.mov","thumbnail/20150916_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"933","","togotv.2015.073","","20150915","DDBJへのデータ登録@初めてのAll-in-one 合同講習会","本日の統合TVは、2015年7月18日に開催された初めてのAll-in-one 合同講習会から、国立遺伝学研究所 DDBJ センター 真島 淳 チーフアノテータ による「DDBJへのデータ登録」をお送りします。約32分です。","講演,DDBJ,データベース,登録方法,All-in-one合同講習会","https://youtu.be/ozeEHjUhz2k","http://togotv.dbcls.jp/movie/150915Allinone_mashima.mov","http://doi.org/10.7875/togotv.2015.073","http://togotv.dbcls.jp/images/20150915_0.jpg","150915Allinone_mashima.mov","thumbnail/20150915_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"932","","togotv.2015.072","","20150914","DDBJのデータベースと検索・解析@初めてのAll-in-one 合同講習会","本日の統合TVは、2015年7月18日に開催された初めてのAll-in-one 合同講習会から、国立遺伝学研究所 大量遺伝情報研究室 中村 保一 教授 による「DDBJのデータベースと検索・解析」をお送りします。約41分です。","講演,DDBJ,データベース,All-in-one合同講習会","https://youtu.be/QnpQhwPhIVU","http://togotv.dbcls.jp/movie/150914Allinone_yn.mov","http://doi.org/10.7875/togotv.2015.072","http://togotv.dbcls.jp/images/20150914_0.jpg","150914Allinone_yn.mov","thumbnail/20150914_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"931","","togotv.2015.071","","20150913","今日から使える(DBCLS謹製の)塩基配列・遺伝子発現データベース・ウェブツールの紹介@初めてのAll-in-one 合同講習会","本日の統合TVは、2015年7月18日に開催された初めてのAll-in-one 合同講習会から、ライフサイエンス統合データベースセンター (DBCLS) 小野 浩雅 による「 今日から使える(DBCLS謹製の)塩基配列・遺伝子発現データベース・ウェブツールの紹介」をお送りします。約34分です。","講演,DBCLS,データベース,ウェブツール,塩基配列,発現解析,All-in-one合同講習会","https://youtu.be/tHrLw9DvwMw","http://togotv.dbcls.jp/movie/150913Allinone_hono.mov","http://doi.org/10.7875/togotv.2015.071","http://togotv.dbcls.jp/images/20150913_0.jpg","150913Allinone_hono.mov","thumbnail/20150913_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"930","","togotv.2015.070","","20150912","セマンティックウェブ技術を活用した生命科学データ利用環境の紹介@初めてのAll-in-one 合同講習会","本日の統合TVは、2015年7月18日に開催された初めてのAll-in-one 合同講習会から、ライフサイエンス統合データベースセンター (DBCLS) 川島 秀一 による「セマンティックウェブ技術を活用した生命科学データ利用環境の紹介」をお送りします。約30分です。","講演,DBCLS,RDF,All-in-one合同講習会","https://youtu.be/GboThUXPol8","http://togotv.dbcls.jp/movie/150912Allinone_kawashima.mov","http://doi.org/10.7875/togotv.2015.070","http://togotv.dbcls.jp/images/20150912_0.jpg","150912Allinone_kawashima.mov","thumbnail/20150912_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"929","","togotv.2015.069","","20150911","文献情報関連サービス活用法@初めてのAll-in-one 合同講習会","本日の統合TVは、2015年7月18日に開催された初めてのAll-in-one 合同講習会から、ライフサイエンス統合データベースセンター (DBCLS) 山本 泰智 による「文献情報関連サービス活用法」をお送りします。約38分です。","講演,DBCLS,文献検索,文章執筆,辞書,All-in-one合同講習会","https://youtu.be/yis2P5HvmkI","http://togotv.dbcls.jp/movie/150911Allinone_yamamoto.mov","http://doi.org/10.7875/togotv.2015.069","http://togotv.dbcls.jp/images/20150911_0.jpg","150911Allinone_yamamoto.mov","thumbnail/20150911_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"928","","togotv.2015.068","","20150910","データベース統合化の取り組みとNBDCで提供するサービス@初めてのAll-in-one 合同講習会","本日の統合TVは、2015年7月18日に開催された初めてのAll-in-one 合同講習会から、バイオサイエンスデータベースセンター (NBDC) / ライフサイエンス統合データベースセンター (DBCLS) 箕輪 真理 による「データベース統合化の取り組みとNBDCで提供するサービス」をお送りします。約65分です。","講演,DBCLS,NBDC,All-in-one 講習会","https://youtu.be/uEHXPr1ZMW8","http://togotv.dbcls.jp/movie/150910Allinone_minowa.mov","http://doi.org/10.7875/togotv.2015.068","http://togotv.dbcls.jp/images/20150910_0.jpg","150910Allinone_minowa.mov","thumbnail/20150910_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"927","","togotv.2015.067","","20150721","GGGenome 《ゲゲゲノム》 で転写因子結合サイトを検索してゲノムブラウザに表示する","GGGenomeは塩基配列を高速に検索することができるツールです。代表的なモデル生物のゲノムまたは転写産物のデータベースを対象に検索できます。
今回は、応用編として、N (any), R (A or G), Y (C or T)
等のあいまいな塩基を含む配列の検索方法と、その検索結果をUCSCゲノムブラウザ上で可視化する方法について紹介します。","塩基配列,ゲノム,DBCLS,UCSC,ウェブツール,転写因子","http://youtu.be/q-jUvReU_9E","http://togotv.dbcls.jp/movie/150721GGGenome_advanced.mov","http://doi.org/10.7875/togotv.2015.067","http://togotv.dbcls.jp/images/20150721_0.jpg","150721GGGenome_advanced.mov","thumbnail/20150721_0.jpg","1. N (any), R (A or G), Y (C or T) 等のあいまいな塩基を含む配列の検索方法 (0分34秒”)","2. 出力結果をUCSCゲノムブラウザで表示する (1分24秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"926","","togotv.2015.066","","20150714","HomoloGeneを用いた相同な遺伝子の検索","NCBIが提供するHomoloGeneは、真核生物間の相同的な遺伝子を検索するツールです。種間比較や系統樹作成のために、興味のある相同遺伝子を一括で取得することができます。
本動画では、系統樹作成の前段階として、まずHomoloGeneにリストされている生物のアミノ酸配列を一括取得する方法を解説(例:活性酸素分解酵素SOD1)し、次にHomoloGeneにリストされていない生物のアミノ酸配列を検索し、取得(例:Bombyx mori(カイコ)のSOD1)する方法について解説します。","遺伝子,系統樹,アミノ酸,配列解析,NCBI,データベース","http://youtu.be/p5a993BBCVM","http://togotv.dbcls.jp/movie/150714_homologene.mov","http://doi.org/10.7875/togotv.2015.066","http://togotv.dbcls.jp/images/20150714_0.jpg","150714_homologene.mov","thumbnail/20150714_0.jpg","1. HomoloGeneにリストされている生物のアミノ酸配列の検索 (0分50秒)","2. アミノ酸配列のダウンロード (1分27秒)","3. カイコのアミノ酸配列のダウンロード (2分17秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"925","","togotv.2015.065","","20150713","生命科学データベース横断検索の使い方","バイオサイエンスデータベースセンター(NBDC)が提供している生命科学データベース横断検索では、散在する生命科学分野の分子データベースを横断的に検索できるだけでなく、特許や文献とあわせて一括して検索できる Google ライクなサービスです。
研究関連の情報をいろいろな情報ソースから入手したいときや、新規分野のレビュー情報の探索に種類の異なる国内外のデータベースを一括してキーワード検索することが可能なので、それぞれのデータベースサイトにいく手間が省けます。
ライフサイエンス辞書を搭載しているので、キーワードを日本語→英語、英語→日本語に翻訳して一括で検索できるのが大きな特徴の一つです。また分子データベースと総説などとを一度に検索できるので、知りたいことの理解を深められます。特許と分子データベースとを同時に検索できる国内初のサービスです。また、さらに「蛋白質核酸酵素」のバックナンバーやゲノム関連の研究報告書、日本生物物理学会や日本農芸化学会の要旨など、これまではあまり重視されてこなかった日本語で書かれた研究情報の横断検索にも力を入れています。
2015年度版では、新たに刷新されたインターフェースでの検索方法を中心に、2011年度版から新たに追加された詳細検索の機能などについて説明します。
","NBDC,特許,文献検索,データベース","http://youtu.be/5QllwaVhyRA","http://togotv.dbcls.jp/movie/150713_lifesciencedatabase.mov","http://doi.org/10.7875/togotv.2015.065","http://togotv.dbcls.jp/images/20150713_0.jpg","150713_lifesciencedatabase.mov","thumbnail/20150713_0.jpg","1. データベース検索 (1分03秒)","2. 検索結果 (1分20秒)","3. 検索結果の絞り込み (3分00秒)","4. ヒット件数検索 (3分33秒)","5. 詳細検索 (4分31秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"924","","togotv.2015.064","","20150708","Cytoscape の使い方〜遺伝子発現を例にしたデータの可視化〜","Cytoscapeとは、生物学上のパスウェイや分子間相互作用ネットワークを可視化&解析できるフリーソフトです。もともとは生物学的ネットワークのためにオブジェクト指向型言語Javaで書かれたソフトですが、もちろん生物以外を対象にすることもできます。手軽な操作でネットワークの画像を出力することができ、また解析をすることもできます。外部のデータベースから情報を取得したり、ネットワークに関する情報を統合することもできます。
「Cytoscape の使い方 〜インストール・基本操作編〜」ではCytoscapeの導入方法と基本的な使い方を説明しました。
この動画では、Cytoscape バージョン 3.2.1
に付属のサンプルデータを使用して、大腸菌Gal4ノックアウト株のマイクロアレイデータを例に、大規模なデータを読み込んで、発現量の変動を可視化し、ネットワークの一部分を抽出する方法について説明します。
Cytoscapeの使い方の資料として過去のAJACS講習会で使われた講義資料PDFもご参考ください。","パスウェイ解析,発現解析,遺伝子,可視化,ソフトウェア","http://youtu.be/cK_1KwHpYJs","http://togotv.dbcls.jp/movie/150708cytoscape_exp.mov","http://doi.org/10.7875/togotv.2015.064","http://togotv.dbcls.jp/images/20150708_0.jpg","150708cytoscape_exp.mov","thumbnail/20150708_0.jpg","1. Cytoscape で読み込めるファイル形式の説明 (00分00秒)","2. ネットワークデータ (galFiltered.csv) の内容説明 (00分32秒)","3. ネットワークデータ (galFiltered.csv) の読み込み (1分08秒)","4. マイクロアレイデータ (galExpData.csv) の内容説明 (2分42秒)","5. マイクロアレイデータ (galExpData.csv) の読み込み・レイアウトとスタイルの変更 (3分18秒)","6. 遺伝子発現量の変動の可視化 (5分11秒)","7. 表示領域の移動 (7分43秒)","8. フィルターによるネットワークの選択と抽出 (8分25秒)","9. ノード情報の確認・ネットワーク上の特徴のある部分の抽出 (10分43秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"923","","togotv.2015.063","","20150707","Cytoscape の使い方 〜インストール・基本操作編〜","Cytoscapeとは、生物学上のパスウェイや分子間相互作用ネットワークを可視化&解析できるフリーソフトです。もともとは生物学的ネットワークのためにオブジェクト指向型言語Javaで書かれたソフトですが、もちろん生物以外を対象にすることもできます。手軽な操作でネットワークの画像を出力することができ、また解析をすることもできます。外部のデータベースから情報を取得したり、ネットワークに関する情報を統合することもできます。
この動画では、Cytoscape バージョン 3.2.1
のインストール方法と基本的な使い方について説明します。
Cytoscapeの使い方の資料として過去のAJACS講習会で使われた講義資料PDFもご参考ください。","パスウェイ解析,発現解析,遺伝子,可視化,ソフトウェア","http://youtu.be/gORbJUqWE88","http://togotv.dbcls.jp/movie/150707cytoscape_basic.mov","http://doi.org/10.7875/togotv.2015.063","http://togotv.dbcls.jp/images/20150707_0.jpg","150707cytoscape_basic.mov","thumbnail/20150707_0.jpg","1. Cytoscape のダウンロードとインストール (0分00秒)","2. ノードとエッジの追加・名前変更 (1分20秒)","3. ノードとエッジの設定変更 (3分35秒)","4. ネットワークのスタイル変更 (5分55秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"922","","togotv.2015.062","","20150625","SeekQuenceを使って論文の情報などから抗体を探す","SeekQuenceは主に抗体を検索することができるサイトです。様々なデータベースの遺伝子IDはもちろん、関連する病名などをキーワードとしても抗体を検索することができます。検索結果は画像とともに表示されます。また、抗体の種類や用途、ホストの生物種などで絞り込むことができます。目的の抗体が見つかれば、提供元へのリンクから購入することもできます。","抗体,遺伝子,疾患情報,情報収集","http://youtu.be/qon7SEbcR7A","http://togotv.dbcls.jp/movie/150625SeekQuence_ja.mov","http://doi.org/10.7875/togotv.2015.062","http://togotv.dbcls.jp/images/20150625_0.jpg","150625SeekQuence_ja.mov","thumbnail/20150625_0.jpg","1. キーワード検索 (0分27秒)","2. 検索結果の見方(0分53秒)","3. 検索結果の絞り込み(1分14秒)","4. ソート・表示方法の変更(1分46秒)","5. 抗体の詳細ページの見方(2分46秒)","6. (おまけ)シークエンシングキットの検索(4分21秒) ","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"921","","togotv.2015.061","","20150623","パスウェイデータベースKEGG/GenomeNetのWebサービスの紹介@AJACS御茶ノ水","本日の統合TVは、2015年5月20-21日に開催された統合データベース講習会:AJACS御茶ノ水から、ライフサイエンス統合データベースセンター
(DBCLS) 川島 秀一 による「パスウェイデータベースKEGG/GenomeNetのWebサービスの紹介」をお送りします。約81分です。","実習,AJACS,パスウェイ解析,KEGG","http://youtu.be/InHJwLoSvB8","http://togotv.dbcls.jp/movie/150623AJACS53_skwsm.mov","http://doi.org/10.7875/togotv.2015.061","http://togotv.dbcls.jp/images/20150623_0.jpg","150623AJACS53_skwsm.mov","thumbnail/20150623_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"920","","togotv.2015.060","","20150622","遺伝子発現DB・ウェブツールの使い方 応用・実践編@AJACS御茶ノ水","本日の統合TVは、2015年5月20-21日に開催された統合データベース講習会:AJACS御茶ノ水から、日本大学 生物資源科学部 応用生物科学科
動物生体機構学研究室 沖 嘉尚 助手による「遺伝子発現DB・ウェブツールの使い方 応用・実践編」をお送りします。約88分です。","実習,AJACS,発現解析,データベース,ウェブツール","http://youtu.be/NQSEGZrf4Dk","http://togotv.dbcls.jp/movie/150622AJACS53_yoki.mov","http://doi.org/10.7875/togotv.2015.060","http://togotv.dbcls.jp/images/20150622_0.jpg","150622AJACS53_yoki.mov","thumbnail/20150622_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"919","","togotv.2015.059","","20150621","遺伝子発現DB・ウェブツールの使い方 基礎編@AJACS御茶ノ水","本日の統合TVは、2015年5月20-21日に開催された統合データベース講習会:AJACS御茶ノ水から、ライフサイエンス統合データベースセンター
(DBCLS) 小野 浩雅 による「遺伝子発現DB・ウェブツールの使い方 基礎編」をお送りします。約87分です。","実習,AJACS,発現解析,データベース,ウェブツール","http://youtu.be/Q_6KzX6iwd4","http://togotv.dbcls.jp/movie/150621AJACS53_hono.mov","http://doi.org/10.7875/togotv.2015.059","http://togotv.dbcls.jp/images/20150621_0.jpg","150621AJACS53_hono.mov","thumbnail/20150621_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"918","","togotv.2015.058","","20150620","DDBJ Pipeline を用いたDNA多型注釈解析@AJACS御茶ノ水","本日の統合TVは、2015年5月20-21日に開催された統合データベース講習会:AJACS御茶ノ水から、国立遺伝学研究所 望月 孝子 特任研究員
による「DDBJ Pipeline を用いたDNA多型注釈解析」をお送りします。約52分です。","実習,AJACS,DDBJ,パイプライン,多型","http://youtu.be/Dsz7fZCT4rc","http://togotv.dbcls.jp/movie/150620AJACS53_mochizuki.mov","http://doi.org/10.7875/togotv.2015.058","http://togotv.dbcls.jp/images/20150620_0.jpg","150620AJACS53_mochizuki.mov","thumbnail/20150620_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"917","","togotv.2015.057","","20150619","次世代シーケンサー(NGS)と関連するデータベース・ツール@AJACS御茶ノ水","本日の統合TVは、2015年5月20-21日に開催された統合データベース講習会:AJACS御茶ノ水から、ライフサイエンス統合データベースセンター(DBCLS)
仲里 猛留 による「次世代シーケンサー(NGS)と関連するデータベース・ツール」をお送りします。約90分です。","実習,AJACS,NGS,データベース","http://youtu.be/NL_F1CS7Bc4","http://togotv.dbcls.jp/movie/150619AJACS53_nakazato.mov","http://doi.org/10.7875/togotv.2015.057","http://togotv.dbcls.jp/images/20150619_0.jpg","150619AJACS53_nakazato.mov","thumbnail/20150619_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"916","","togotv.2015.056","","20150618","NBDCの紹介とNBDCが提供するサービス@AJACS御茶ノ水","本日の統合TVは、2015年5月20-21日に開催された統合データベース講習会:AJACS御茶ノ水から、バイオサイエンスデータベースセンター(NBDC)/ライフサイエンス統合データベースセンター(DBCLS)
箕輪 真理 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約82分です。","実習,AJACS,NBDC,データベース","http://youtu.be/eCl9XCv6Stc","http://togotv.dbcls.jp/movie/150618AJACS53_minowa.mov","http://doi.org/10.7875/togotv.2015.056","http://togotv.dbcls.jp/images/20150618_0.jpg","150618AJACS53_minowa.mov","thumbnail/20150618_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"915","","togotv.2015.055","","20150617","DDBJ BioProject, BioSample, Sequence Read Archive への登録","本日の統合TVは、DNA Data Bank of Japan (DDBJ) からの「投稿TV」として、「DDBJ BioProject, BioSample, Sequence Read Archive への登録」をお送りします。2015年4月から、DDBJ のBioProject、BioSample、DDBJ Sequence Read Archive (DRA)の各登録システムが一元化され、まとめて登録できるようになった (DDBJニュース)ことを受けて、その使い方の動画が DDBJ YouTube Channelにて公開されています。
","DDBJ,登録方法,データベース,NGS","http://youtu.be/GbAVB3Zg1tw","http://togotv.dbcls.jp/movie/150617DDBJ_submission.mov","http://doi.org/10.7875/togotv.2015.055","http://togotv.dbcls.jp/images/20150617_0.jpg","150617DDBJ_submission.mov","thumbnail/20150617_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"914","","togotv.2015.054","","20150603","illumina BaseSpace の紹介と最新情報","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、イルミナ株式会社癸生川 絵里 氏 による「illumina BaseSpace の紹介と最新情報」をお送りします。約16分です。
","講演,Galaxy,ウェブツール","http://youtu.be/xFIgpkGyCqQ","http://togotv.dbcls.jp/movie/150603GW2015_kibukawa.mov","http://doi.org/10.7875/togotv.2015.054","http://togotv.dbcls.jp/images/20150603_0.jpg","150603GW2015_kibukawa.mov","thumbnail/20150603_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"913","","togotv.2015.053","","20150602","Garuda - The way biology connects","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、システム・バイオロジー研究機構Nikos Tsorman 氏 による「Garuda - The way biology connects」をお送りします。約12分です。
The Galaxy Workshop Tokyo 2015 was held in RCAST, The University of Tokyo
in Japan. (Apr. 28, 2015)
In this talk, Nikos Tsorman (The Systems Biology Institute) makes a
Presentation entitled ""Garuda - The way biology connects"". (12:13)","講演,Galaxy,講演,English,ウェブツール","http://youtu.be/GnsKsiX-Fdk","http://togotv.dbcls.jp/movie/150602GW2015_tsorman.mov","http://doi.org/10.7875/togotv.2015.053","http://togotv.dbcls.jp/images/20150602_0.jpg","150602GW2015_tsorman.mov","thumbnail/20150602_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"912","","togotv.2015.052","","20150601","高性能PCクラスタ上で Galaxy を利用する","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、株式会社ナベ インターナショナル内田 智博 氏 による「高性能PCクラスタ上で Galaxy を利用する」をお送りします。約11分です。
","講演,Galaxy,ウェブツール","http://youtu.be/8_zaViYTqts","http://togotv.dbcls.jp/movie/150601GW2015_uchida.mov","http://doi.org/10.7875/togotv.2015.052","http://togotv.dbcls.jp/images/20150601_0.jpg","150601GW2015_uchida.mov","thumbnail/20150601_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"911","","togotv.2015.051","","20150531","AWS クラウド上で Galaxy を利用する","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、アマゾン データ サービス ジャパン株式会社 吉荒 裕一 氏 による「AWS クラウド上で Galaxy を利用する」をお送りします。約11分です。
","講演,Galaxy,ウェブツール","http://youtu.be/WcyfgQcC8bU","http://togotv.dbcls.jp/movie/150531GW2015_yoshiara.mov","http://doi.org/10.7875/togotv.2015.051","http://togotv.dbcls.jp/images/20150531_0.jpg","150531GW2015_yoshiara.mov","thumbnail/20150531_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"910","","togotv.2015.050","","20150530","The Australian Genomic Virtual Lab"," 本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、The VLSCI Life Science Computation Centre (LSCC)Andrew Lonie氏 による「The Australian Genomic Virtual Lab」をお送りします。約35分です。
The Galaxy Workshop Tokyo 2015 was held in RCAST, The University of Tokyo
in Japan. (Apr. 28, 2015)
In this talk, \Andrew Lonie (The The VLSCI Life Science Computation Centre (LSCC)) makes a Presentation entitled ""The Australian Genomic Virtual Lab"".
(34:54)","講演,Galaxy,English,ウェブツール","http://youtu.be/mZdrYIuVeTs","http://togotv.dbcls.jp/movie/150530GW2015_lonie.mov","http://doi.org/10.7875/togotv.2015.050","http://togotv.dbcls.jp/images/20150530_0.jpg","150530GW2015_lonie.mov","thumbnail/20150530_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"909","","togotv.2015.049","","20150529","Galaxy ワークフローの紹介 (Variant Calling 03)","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、国立遺伝学研究所 大量遺伝情報研究室長崎 英樹 氏 による「Galaxy ワークフローの紹介 (Variant Calling 03)」をお送りします。14分です。","講演,Galaxy,ワークフロー,NGS,ウェブツール","http://youtu.be/JhZWnYyTckM","http://togotv.dbcls.jp/movie/150529GW2015_nagasaki.mov","http://doi.org/10.7875/togotv.2015.049","http://togotv.dbcls.jp/images/20150529_0.jpg","150529GW2015_nagasaki.mov","thumbnail/20150529_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"908","","togotv.2015.048","","20150528","Galaxy ワークフローの紹介 (Variant Calling 02)","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、合同会社パーシピア 池田 誠 氏 による「Galaxy ワークフローの紹介 (Variant Calling 02)」をお送りします。約11分です。","講演,Galaxy,ワークフロー,NGS,ウェブツール","http://youtu.be/kvn_t0xp2T0","http://togotv.dbcls.jp/movie/150528GW2015_ikeda.mov","http://doi.org/10.7875/togotv.2015.048","http://togotv.dbcls.jp/images/20150528_0.jpg","150528GW2015_ikeda.mov","thumbnail/20150528_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"907","","togotv.2015.047","","20150527","Galaxy ワークフローの紹介 (Variant Calling 01)","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、産業技術総合研究所 創薬基盤研究部門 新海 典夫 氏 による「Galaxy ワークフローの紹介 (Variant Calling 01)」をお送りします。約9分です。","講演,Galaxy,ワークフロー,NGS,ウェブツール","http://youtu.be/6KsMJhoknhk","http://togotv.dbcls.jp/movie/150527GW2015_shinkai.mov","http://doi.org/10.7875/togotv.2015.047","http://togotv.dbcls.jp/images/20150527_0.jpg","150527GW2015_shinkai.mov","thumbnail/20150527_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"906","","togotv.2015.046","","20150526","Galaxy ワークフローの紹介 (BS-seq 01)","
本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、産業技術総合研究所 ゲノム情報研究センター齋藤 裕 氏 による「Galaxy ワークフローの紹介 (BS-seq 01)」をお送りします。約14分です。
","講演,Galaxy,ワークフロー,NGS,ウェブツール","http://youtu.be/F3f2tLiZkFY","http://togotv.dbcls.jp/movie/150526GW2015_saito.mov","http://doi.org/10.7875/togotv.2015.046","http://togotv.dbcls.jp/images/20150526_0.jpg","150526GW2015_saito.mov","thumbnail/20150526_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"905","","togotv.2015.045","","20150525","Pitagora-Galaxy with ChIP-seq","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、東京大学 先端科学技術研究センター仲木 竜氏 による「Pitagora-Galaxy with ChIP-seq」をお送りします。約14分です。","講演,Galaxy,ワークフロー,ChIP-seq,ウェブツール","http://youtu.be/XQiwWqRHEOA","http://togotv.dbcls.jp/movie/150525GW2015_nakaki.mov","http://doi.org/10.7875/togotv.2015.045","http://togotv.dbcls.jp/images/20150525_0.jpg","150525GW2015_nakaki.mov","thumbnail/20150525_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"904","","togotv.2015.044","","20150524","Galaxy ワークフローの紹介 (CAGE 01)","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、株式会社アスケイド那須野 淳氏 による「Galaxy ワークフローの紹介 (CAGE 01)」をお送りします。約11分です。
","講演,Galaxy,ワークフロー,CAGE,ウェブツール","http://youtu.be/XIem5qnqqn8","http://togotv.dbcls.jp/movie/150524GW2015_nasuno.mov","http://doi.org/10.7875/togotv.2015.044","http://togotv.dbcls.jp/images/20150524_0.jpg","150524GW2015_nasuno.mov","thumbnail/20150524_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"903","","togotv.2015.043","","20150523","Galaxy ワークフローの紹介 (RNA-seq 02)","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015
から、理化学研究所 統合生命医科学研究センター中岡 慎治 氏 による「Galaxy ワークフローの紹介 (RNA-seq 02)」をお送りします。約12分です。","講演,Galaxy,ワークフロー,NGS,RNA-seq,ウェブツール","http://youtu.be/iUGmQg31rVU","http://togotv.dbcls.jp/movie/150523GW2015_nakaoka.mov","http://doi.org/10.7875/togotv.2015.043","http://togotv.dbcls.jp/images/20150523_0.jpg","150523GW2015_nakaoka.mov","thumbnail/20150523_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"902","","togotv.2015.042","","20150522","Galaxy ワークフローの紹介 (RNA-seq 01)","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、理化学研究所 情報基盤センター バイオインフォマティクス研究開発ユニット芳村 美佳 氏 による「Galaxy ワークフローの紹介 (RNA-seq 01)」をお送りします。約10分です。
","講演,Galaxy,ワークフロー,NGS,RNA-seq,ウェブツール","http://youtu.be/FZjcusQqkpA","http://togotv.dbcls.jp/movie/150522GW2015_yoshimura.mov","http://doi.org/10.7875/togotv.2015.042","http://togotv.dbcls.jp/images/20150522_0.jpg","150522GW2015_yoshimura.mov","thumbnail/20150522_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"901","","togotv.2015.041","","20150521","The Galaxy Ecosystem","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015
から、ジョンズ・ホプキンス大学Dave Clements氏 による「The Galaxy Ecosystem」をお送りします。約4分です。
The Galaxy Workshop Tokyo 2015 was held in RCAST, The University of Tokyo in Japan. (Apr. 28, 2015) In this talk, Dave Clements (Johns Hopkins University) makes a presentation entitled ""The Galaxy Ecosystem"". (4:19)
","講演,Galaxy,講演,English,ウェブツール","http://youtu.be/0et9a7UATlM","http://togotv.dbcls.jp/movie/150521GW2015_Dave.mov","http://doi.org/10.7875/togotv.2015.041","http://togotv.dbcls.jp/images/20150521_0.jpg","150521GW2015_Dave.mov","thumbnail/20150521_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"900","","togotv.2015.040","","20150520","Community Galaxy の紹介","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、東京大学 先端科学技術研究センター山中 遼太氏 による「Community Galaxy (コミュニティーギャラクシー= Pitagora Galaxy: ピタゴラギャラクシー)の紹介」をお送りします。約8分です。
","講演,Galaxy,ウェブツール","http://youtu.be/RkrODiV2cZc","http://togotv.dbcls.jp/movie/150520GW2015_yamanaka.mov","http://doi.org/10.7875/togotv.2015.040","http://togotv.dbcls.jp/images/20150520_0.jpg","150520GW2015_yamanaka.mov","thumbnail/20150520_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"899","","togotv.2015.039","","20150519","生命科学の基盤となるデータサイエンス","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、東京大学 先端科学技術研究センター油谷 浩幸教授 による「生命科学の基盤となるデータサイエンス」をお送りします。約25分です。
","講演,Galaxy,ウェブツール","http://youtu.be/9Gqec0grJvk","http://togotv.dbcls.jp/movie/150519GW2015_aburatani.mov","http://doi.org/10.7875/togotv.2015.039","http://togotv.dbcls.jp/images/20150519_0.jpg","150519GW2015_aburatani.mov","thumbnail/20150519_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"898","","togotv.2015.038","","20150518","Hands-on: Community Galaxy の紹介とインストール","本日の統合TVは、2015年4月28日に開催されたThe Galaxy Workshop Tokyo 2015から、ライフサイエンス統合データベースセンター(DBCLS) 大田 達郎 による「Hands-on: Community Galaxy (コミュニティーギャラクシー= Pitagora Galaxy: ピタゴラギャラクシー)の紹介とインストール」をお送りします。約1時間40分です。","実習,Galaxy,ウェブツール","http://youtu.be/CxO3Mt3DHlo","http://togotv.dbcls.jp/movie/150518GW2015_inut.mov","http://doi.org/10.7875/togotv.2015.038","http://togotv.dbcls.jp/images/20150518_0.jpg","150518GW2015_inut.mov","thumbnail/20150518_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"897","","togotv.2015.037","","20150515","GOLD -Genomes Online Database- の使い方","GOLDはゲノム塩基配列解読プロジェクトを集めたデータベースです。すでに終了したプロジェクトだけでなく、現在進行中のゲノムプロジェクトやメタゲノムプロジェクトについても調べることができます。本動画では、主にGOLDのホームページでプロジェクトの探し方について説明します。","ゲノム,塩基配列,メタゲノム,データベース","http://youtu.be/kzdBckE7teE","http://togotv.dbcls.jp/movie/150514GGGenome_E.mov","http://doi.org/10.7875/togotv.2015.037","http://togotv.dbcls.jp/images/20150508_0.jpg","150514GGGenome_E.mov","thumbnail/20150508_0.jpg","1. Search からプロジェクトを探す(1分04秒)","2. Projectsからプロジェクトを探す(4分48秒)","3. Organismsからプロジェクトを探す(6分45秒)","4. タブメニューの説明(7分47秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"896","","togotv.2015.036","","20150514","GGGenome: a fast and simple DNA sequence search engine","GGGenome enables the fast searching of DNA sequences. Databases of genomes and transcripts of major model organisms can be searched."," ゲノム,塩基配列,English,ウェブツール","http://youtu.be/IZgGA94ooic","http://togotv.dbcls.jp/movie/150508GOLD.mov","http://doi.org/10.7875/togotv.2015.036","http://togotv.dbcls.jp/images/20150514_0.jpg","150508GOLD.mov","thumbnail/20150514_0.jpg","1.Simple search (0’12”)","2.Arranging method for primer sequences (3’14”)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"895","","togotv.2015.035","","20150413","MAFFTを使ってマルチプルアラインメントを行う","MAFFT (「マフト」と読みます) は複数の塩基配列やアミノ酸配列をできるかぎり一致するように並べる(多重(マルチプル)アラインメント)ツールです。アラインメントは、タンパク質ファミリーの保存残基を探したり、二次構造や三次構造の予測を助けたり、PCRプライマーの設計に一役買ったり、分子進化解析の基礎データともなります。今回紹介するCBRCのMAFFTでは、Jalviewを使ってアラインメントの結果を視覚的に見ることもできます。以前紹介したClustal Omegaに比べ、非常に高速にアライメントできるため、長い配列や、多数の配列のマルチプルアラインメントに優れています。今回は例として、CBRCのサイトに用意されている、LSU rRNAをサンプル配列として多重アラインメントを行い、系統樹を作成する方法を説明します。","塩基配列,アミノ酸,アラインメント,タンパク質,構造解析,系統樹,配列解析,ウェブツール","http://youtu.be/tpe7Qy3UPDM","http://togotv.dbcls.jp/movie/150413MAFFT.mov","http://doi.org/10.7875/togotv.2015.035","http://togotv.dbcls.jp/images/20150413_0.jpg","150413MAFFT.mov","thumbnail/20150413_0.jpg","1. CBRCのMAFFTのサイト (00:28)","2. Clustal formatの結果を見る (3:37)","3. Fasta formatの結果を見る (4:06)","4. Jalviewを使ってアラインメントを見る (4:42)","5. 系統樹を見る (5:34)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"894","","togotv.2015.034","","20150411","RおよびBioconductorを使ったバイオデータ解析","本日の統合TVは、2015年3月5日に開催された統合データベース講習会:AJACS府中から、ライフサイエンス統合データベースセンター(DBCLS) 坊農 秀雅 による「RおよびBioconductorを使ったバイオデータ解析」をお送りします。約90分です。","実習,AJACS,R,Bioconductor,発現解析","http://youtu.be/ea-2bGXuSD0","http://togotv.dbcls.jp/movie/150411AJACS52bono.mov","http://doi.org/10.7875/togotv.2015.034","http://togotv.dbcls.jp/images/20150411_0.jpg","150411AJACS52bono.mov","thumbnail/20150411_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"893","","togotv.2015.033","","20150410","遺伝子発現DB・解析ツールの紹介","本日の統合TVは、2015年3月5日に開催された統合データベース講習会:AJACS府中から、ライフサイエンス統合データベースセンター(DBCLS) 小野 浩雅 による「遺伝子発現DB・解析ツールの紹介」をお送りします。約62分です。","実習,AJACS,遺伝子,発現解析","http://youtu.be/vNkScNeKrmQ","http://togotv.dbcls.jp/movie/150410AJACS52hono.mov","http://doi.org/10.7875/togotv.2015.033","http://togotv.dbcls.jp/images/20150410_0.jpg","150410AJACS52hono.mov","thumbnail/20150410_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"892","","togotv.2015.032","","20150409","データ解析プラットフォーム Galaxy の使い方","本日の統合TVは、2015年3月5日に開催された統合データベース講習会:AJACS府中から、ライフサイエンス統合データベースセンター(DBCLS) 大田 達郎 による「データ解析プラットフォーム Galaxy の使い方」をお送りします。約63分です。","実習,AJACS,Galaxy","http://youtu.be/rUWORIbDeLY","http://togotv.dbcls.jp/movie/150409AJACS52ohta.mov","http://doi.org/10.7875/togotv.2015.032","http://togotv.dbcls.jp/images/20150409_0.jpg","150409AJACS52ohta.mov","thumbnail/20150409_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"891","","togotv.2015.031","","20150408","DDBJと新型シーケンサ解析パイプラインの使い方","本日の統合TVは、2015年3月5日に開催された統合データベース講習会:AJACS府中から、国立遺伝学研究所 大量遺伝情報研究室 中村 保一 教授 による「DDBJと新型シーケンサ解析パイプラインの使い方」をお送りします。約54分です。","実習,AJACS,DDBJ,パイプライン,NGS","http://youtu.be/UE9H10_QRt0","http://togotv.dbcls.jp/movie/150408AJACS52nakamura.mov","http://doi.org/10.7875/togotv.2015.031","http://togotv.dbcls.jp/images/20150408_0.jpg","150408AJACS52nakamura.mov","thumbnail/20150408_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"890","","togotv.2015.030","","20150407","NBDCの紹介とNBDCが提供するサービス","本日の統合TVは、2015年3月5日に開催された統合データベース講習会:AJACS府中から、ライフサイエンス統合データベースセンター(DBCLS)/バイオサイエンスデータベースセンター(NBDC) 箕輪 真理 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約73分です。","実習,AJACS,NBDC,データベース","http://youtu.be/t6QZLtrFabE","http://togotv.dbcls.jp/movie/150407AJACS52minowa.mov","http://doi.org/10.7875/togotv.2015.030","http://togotv.dbcls.jp/images/20150407_0.jpg","150407AJACS52minowa.mov","thumbnail/20150407_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"889","","togotv.2015.029","","20150326","Linked annotations: a middle ground for manual curation of biomedical
databases and text corpora","Biomedical Linked Annotation Hackathon (BLAH) 1 was held in The University of Tokyo Kashiwa Campus Station Satellite in Kashiwa, Chiba, Japan. On the last day of the Hackathon (Feb. 27), public symposium of the BLAH 1 was held. In this talk, Juan Miguel Cejuela (TU Munchen) makes a presentation entitled ""Linked annotations: a middle ground for manual curation of biomedical databases and text corpora"". (10:58) ","講演,English,BioHackathon","http://youtu.be/yR0-rhS0wkw","http://togotv.dbcls.jp/movie/150326BLAH2015_Juan.mov","http://doi.org/10.7875/togotv.2015.029","http://togotv.dbcls.jp/images/20150326_0.jpg","150326BLAH2015_Juan.mov","thumbnail/20150326_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"888","","togotv.2015.028","","20150325","Bio-medical entity prioritisation based on literature with Semantic Web
annotations","Biomedical Linked Annotation Hackathon (BLAH) 1 was held in The University of Tokyo Kashiwa Campus Station Satellite in Kashiwa, Chiba, Japan. On the last day of the Hackathon (Feb. 27), public symposium of the BLAH 1 was held. In this talk, Norio Kobayashi (RIKEN) makes a presentation entitled ""Bio-medical entity prioritisation based on literature with Semantic Web annotations"". (18:39) ","講演,English,BioHackathon","http://youtu.be/pWjgBQc6HJw","http://togotv.dbcls.jp/movie/150325BLAH2015_kobayashi.mov","http://doi.org/10.7875/togotv.2015.028","http://togotv.dbcls.jp/images/20150325_0.jpg","150325BLAH2015_kobayashi.mov","thumbnail/20150325_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"887","","togotv.2015.027","","20150324","Crowdsourcing and human annotation: going beyond the legends to create
quality data","Biomedical Linked Annotation Hackathon (BLAH) 1 was held in The University of Tokyo Kashiwa Campus Station Satellite in Kashiwa, Chiba, Japan. On the last day of the Hackathon (Feb. 27), public symposium of the BLAH 1 was held.In this talk, Karen Fort (Paris-Sorbonne University) makes a presentation entitled ""Crowdsourcing and human annotation: going beyond the legends to create quality data"". (38:08) ","講演,English,BioHackathon","http://youtu.be/fb4q7r0qwiE","http://togotv.dbcls.jp/movie/150324BLAH2015_karen.mov","http://doi.org/10.7875/togotv.2015.027","http://togotv.dbcls.jp/images/20150324_0.jpg","150324BLAH2015_karen.mov","thumbnail/20150324_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"886","","togotv.2015.026","","20150323","Could anyone actually use PubAnnotation?","Biomedical Linked Annotation Hackathon (BLAH) 1 was held in The University of Tokyo Kashiwa Campus Station Satellite in Kashiwa, Chiba, Japan. On the last day of the Hackathon (Feb. 27), public symposium of the BLAH 1 was held. In this talk, Kevin Bretonnel Cohen (University of Colorado school of medicine) makes a presentation entitled ""Could anyone actually use PubAnnotation?"". (6:11) ","講演,English,BioHackathon","http://youtu.be/E-7qjjORX48","http://togotv.dbcls.jp/movie/150323BLAH2015_kevin.mov","http://doi.org/10.7875/togotv.2015.026","http://togotv.dbcls.jp/images/20150323_0.jpg","150323BLAH2015_kevin.mov","thumbnail/20150323_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"885","","togotv.2015.025","","20150322","ubAnnotation-query: a search tool for multi-layer RDF-annotated corpora","Biomedical Linked Annotation Hackathon (BLAH) 2015 was held in The University of Tokyo Kashiwa Campus Station Satellite in Kashiwa, Chiba, Japan. On the last day of the Hackathon (Feb. 27), public symposium of the BLAH 2015 was held. In this talk, Jin-Dong Kim (DBCLS) makes a presentation entitled ""PubAnnotation-query: a search tool for multi-layer RDF-annotated corpora"". (8:49) ","講演,English,BioHackathon,RDF","http://youtu.be/5EIo-pq3QwU","http://togotv.dbcls.jp/movie/150322BLAH2015_kim.mov","http://doi.org/10.7875/togotv.2015.025","http://togotv.dbcls.jp/images/20150322_0.jpg","150322BLAH2015_kim.mov","thumbnail/20150322_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"884","","togotv.2015.024","","20150321","Interoperability of Text Corpus Annotations with the Semantic Web","Biomedical Linked Annotation Hackathon (BLAH) 1 was held in The University of Tokyo Kashiwa Campus Station Satellite in Kashiwa, Chiba, Japan. On the last day of the Hackathon (Feb. 27), public symposium of the BLAH 1 was held. In this talk, Karin Verspoor (University of Melbourne) makes a presentation entitled ""Interoperability of Text Corpus Annotations with the Semantic Web"". (21:05) ","講演,English,BioHackathon","http://youtu.be/XR0bE6OBp0w","http://togotv.dbcls.jp/movie/150321BLAH2015_Karin.mov","http://doi.org/10.7875/togotv.2015.024","http://togotv.dbcls.jp/images/20150321_0.jpg","150321BLAH2015_Karin.mov","thumbnail/20150321_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"883","","togotv.2015.023","","20150320","The linked open bibliome as a Popperian World 3: implications on
co-reference and criticism","Biomedical Linked Annotation Hackathon (BLAH) 1 was held in The University of Tokyo Kashiwa Campus Station Satellite in Kashiwa, Chiba, Japan. On the last day of the Hackathon (Feb. 27), public symposium of the BLAH 1 was held. In this talk, Pierre Zweigenbaum (LIMSI-CNRS) makes a presentation entitled ""The linked open bibliome as a Popperian World 3: implications on co-reference and criticism"". (37:42) ","講演,English,BioHackathon","http://youtu.be/Vk3szZ3O810","http://togotv.dbcls.jp/movie/150320BLAH2015_Pierre.mov","http://doi.org/10.7875/togotv.2015.023","http://togotv.dbcls.jp/images/20150320_0.jpg","150320BLAH2015_Pierre.mov","thumbnail/20150320_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"882","","togotv.2015.022","","20150319","Aligning bio-events in NLP tasks with biological standards and ontologies","Biomedical Linked Annotation Hackathon (BLAH) 1 was held in The University of Tokyo Kashiwa Campus Station Satellite in Kashiwa, Chiba, Japan. On the last day of the Hackathon (Feb. 27), public symposium of the BLAH 1 was held. In this talk, Chen Li (Massachusetts Institute of Technology) makes a presentation entitled ""Aligning bio-events in NLP tasks with biological standards and ontologies"". (12:59) ","講演,English,BioHackathon","http://youtu.be/YTqReQ3bOQc","http://togotv.dbcls.jp/movie/150319BLAH2015_Li.mov","http://doi.org/10.7875/togotv.2015.022","http://togotv.dbcls.jp/images/20150319_0.jpg","150319BLAH2015_Li.mov","thumbnail/20150319_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"881","","togotv.2015.021","","20150318","Principles for representing knowledge in and about texts","Biomedical Linked Annotation Hackathon (BLAH) 1 was held in The University of Tokyo Kashiwa Campus Station Satellite in Kashiwa, Chiba, Japan. On the last day of the Hackathon (Feb. 27), public symposium of the BLAH 1 was held. In this talk, Larry Hunter (University of Colorado school of medicine) makes a presentation entitled ""Principles for representing knowledge in and about texts"". (33:20) ","講演,English,BioHackathon","http://youtu.be/WJ75AXrYCVs","http://togotv.dbcls.jp/movie/150318BLAH2015_Hunter.mov","http://doi.org/10.7875/togotv.2015.021","http://togotv.dbcls.jp/images/20150318_0.jpg","150318BLAH2015_Hunter.mov","thumbnail/20150318_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"880","","togotv.2015.020","","20150317","Introduction of BLAH2015","Biomedical Linked Annotation Hackathon (BLAH) 1 was held in The University of Tokyo Kashiwa Campus Station Satellite in Kashiwa, Chiba, Japan. On the last day of the Hackathon (Feb. 27), public symposium of the BLAH 1 was held.In this talk, Jin-Dong Kim (DBCLS, Japan) makes a presentation entitled ""Introduction of BLAH2015"". (5:35) ","講演,English,BioHackathon","http://youtu.be/4wRwL5YD6Wc","http://togotv.dbcls.jp/movie/150317BLAH2015_kim.mov","http://doi.org/10.7875/togotv.2015.020","http://togotv.dbcls.jp/images/20150317_0.jpg","150317BLAH2015_kim.mov","thumbnail/20150317_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"879","","togotv.2015.019","","20150316","Clustal Omega を使ってマルチプルアラインメントを行う","Clustal Omega (「クラスタルオメガ」と読みます) は複数の塩基配列やアミノ酸配列をできるかぎり一致するように並べる(多重(マルチプル)アラインメント)ツールです。アラインメントは、タンパク質ファミリーの保存残基を探したり、二次構造や三次構造の予測を助けたり、PCRプライマーの設計に一役買ったり、分子進化解析の基礎データともなります。今回紹介するEBIのClustal Omegaでは、Jalviewを使ってアラインメントの結果を視覚的に見ることもできます。として多重アラインメントを行い、系統樹を作成する方法を説明します。今回は例として、ヒト、マウス、ブタの各生物種における脂肪代謝遺伝子peroxisome proliferator-activated receptor(PPAR)ファミリーの塩基配列を サンプル配列として用います。","塩基配列,アミノ酸,アラインメント,タンパク質,構造解析,EBI,系統樹,配列解析,ウェブツール","http://youtu.be/yQr5QnFh1tw","http://togotv.dbcls.jp/movie/150316clustalomega.mov","http://doi.org/10.7875/togotv.2015.019","http://togotv.dbcls.jp/images/20150316_0.jpg","150316clustalomega.mov","thumbnail/20150316_0.jpg","1. Javaのインストール (00:20)","2. EBIのClustal Omegaのサイト (2:22)","3. Result Summaryから結果を見る (4:14)","4. マルチプルアラインメントを見る (5:00)","5. Jalviewを使ってアラインメントを見る (6:07)","6. 系統樹を見る (7:50)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"878","","togotv.2015.018","","20150313","Tutorial movies for TargetMine ~ List search, QueryBuilder~","TargetMine assists drug discovery and development, with emphasis on
early-stage target discovery and validation.
It integrates a diverse array of >30 public data sources, including genes,
transcription factors, diseases and drugs, to enable efficient knowledge
discovery.
In this movie, we will introduce the ""List Search"" and ""QueryBuilder""
functions.","English,遺伝子,疾患情報,創薬,転写因子,データベース","http://youtu.be/GgSm5brF-uQ","http://togotv.dbcls.jp/movie/150313TargetMine_advanced_en.mov","http://doi.org/10.7875/togotv.2015.018","http://togotv.dbcls.jp/images/20150313_0.jpg","150313TargetMine_advanced_en.mov","thumbnail/20150313_0.jpg","1. List Search (00:28)","2. A template query using a list (2:35)","3. Create a list with logical operations (3:26)","4. Query Builder (4:20)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"877","","togotv.2015.017","","20150306","TargetMineの使い方 〜リスト検索・クエリビルダ編〜","TargetMineは創薬支援の統合データウェアハウスです。創薬の初期研究における支援を目的として、国際的に広く使用されている30以上の公共のデータソースを統合し、疾患関連遺伝子、相互作用、転写因子などの創薬研究のキーとなるデータから、効率的に知識発見をすることができます。ウェブ版のTargetMineは、アカデミック/非アカデミックを問わず、無料で利用可能です。今回の動画では、前回のキーワード・テンプレート検索編の続編として、リスト検索・クエリビルダを使用した検索方法を紹介します。","遺伝子,疾患情報,創薬,転写因子,データベース","http://youtu.be/v32i9KAUHc4","http://togotv.dbcls.jp/movie/150306TargetMine_advanced.mov","http://doi.org/10.7875/togotv.2015.017","http://togotv.dbcls.jp/images/20150306_0.jpg","150306TargetMine_advanced.mov","thumbnail/20150306_0.jpg","1.リスト検索(00:32)","2.リストからテンプレートクエリの実行(2:39)","3. 論理演算を使ったリストの作成(3:16)","4.クエリビルダを使用した検索(4:14)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"876","","togotv.2015.016","","20150227","InterProを使ってアミノ酸配列からタンパク質の機能を予測する"," InterProはタンパク質のファミリー・ドメイン・モチーフに関するさまざまなデータベースを統合した EBI (European Bioinformatics Institute)のサービスです。この動画では、InterProの使い方を、DB検索ツールであるInterProScanを用いて説明しています。ある一つのアミノ酸配列をInterProが統合している複数のデータベースにまとめて検索にかけ、問い合わせた配列にヒットしたタンパク質ファミリーやドメイン・リピート構造を効率的に推測することができます。
この動画では機能既知のタンパク質(ヒトの脂肪代謝関連遺伝子の一つである PPARG)の配列を用いていますが、機能未知のタンパク質のアミノ酸配列を検索にかけることで、配列解析による機能アノテーションを簡単に行うことができます。
","タンパク質,EBI,配列解析,データベース","http://youtu.be/50X4HPmh5TI","http://togotv.dbcls.jp/movie/150227InterPro.mov","http://doi.org/10.7875/togotv.2015.016","http://togotv.dbcls.jp/images/20150227_0.jpg","150227InterPro.mov","thumbnail/20150227_0.jpg","1. アミノ酸配列を入力する (0分46秒)","2. 検索結果の見方 (1分30秒)","3. 検索結果として出てきた特徴について詳しく見る (2分48秒)","4. 同じ特徴を持つタンパク質のリストを得る (3分42秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"875","","togotv.2015.015","","20150207","Colilを使って論文の引用情報を検索する","Colilは、生命科学分野の文献間の引用関係を検索・閲覧できるサービスです。ある論文について、他の論文が本文中でどのように引用し記述しているかを、効率的に調べることができます。検索例やデータの詳細については、Colil Data Portalにまとめられています。","文献検索,DBCLS,ウェブツール,情報収集","http://youtu.be/JJp1R3qY5wU","http://togotv.dbcls.jp/movie/150207Colil.mov","http://doi.org/10.7875/togotv.2015.015","http://togotv.dbcls.jp/images/20150207_0.jpg","150207Colil.mov","thumbnail/20150207_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"874","","togotv.2015.014","","20150206","Tutorial movies for TargetMine ~keyword, Template Search~","TargetMine assists drug discovery and development, with emphasis on early-stage target discovery and validation. It integrates a diverse array of >30 public data sources, including genes, transcription factors, diseases and drugs, to enable efficient knowledge discovery. In this movie, we will introduce the ""keyword search"" and ""template query"" functions.","English,遺伝子,転写因子,疾患情報,創薬,データベース","http://youtu.be/rEUO1pVGSVg","http://togotv.dbcls.jp/movie/150206TargetMine_2015_1_en.mov","http://doi.org/10.7875/togotv.2015.014","http://togotv.dbcls.jp/images/20150206_0.jpg","150206TargetMine_2015_1_en.mov","thumbnail/20150206_0.jpg","1. Keyword search (1:00)","2. Filter the results by category (1:50)","3. Biological annotations on the report page (2:40)","4. A wide range of predefined queries, known as templates (4:06)","5. Template for retrieving upstream TFs (5:17)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"873","","togotv.2015.013","","20150205","TargetMineの使い方 〜キーワード・テンプレート検索編〜","TargetMineは創薬支援の統合データウェアハウスです。創薬の初期研究における支援を目的として、国際的に広く使用されている30以上の公共のデータソースを統合し、疾患関連遺伝子、相互作用、転写因子などの創薬研究のキーとなるデータから、効率的に知識発見をすることができます。ウェブ版のTargetMineは、アカデミック/非アカデミックを問わず、無料で利用可能です。今回の動画では、キーワード検索、テンプレートを使用した検索を紹介します。","遺伝子,転写因子,疾患情報,創薬,データベース","http://youtu.be/wUXzcL8mrZM","http://togotv.dbcls.jp/movie/150205TargetMine_ja2.mov","http://doi.org/10.7875/togotv.2015.013","http://togotv.dbcls.jp/images/20150205_0.jpg","150205TargetMine_ja2.mov","thumbnail/20150205_0.jpg","1. キーワード検索 (1分00秒)","2. カテゴリを指定してデータ閲覧 (1分50秒)","3. 遺伝子に関する情報の閲覧 (2分40秒)","4. 様々なテンプレートを使って検索 (4分06秒)","5. 上流転写因子を取得する (5分17秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"872","","togotv.2015.012","","20150204","The Human Protein Atlasでヒトのタンパク質の発現情報を画像データとともに調べる"," The Human Protein Atlasは、スウェーデンの研究グループ(スウェーデン王立工科大学、ウプサラ大学、SciLifeLab)が提供している、ヒトのタンパク質の発現情報データベースです。さまざまなヒトの組織やガン細胞、細胞株におけるタンパク質発現情報・RNA発現情報およびタンパク質局在を、特異的抗体を用いて得られた免疫組織化学染色写真や免疫蛍光染色写真とともに調べることができます。また、測定に使用されている抗体をメーカーへのリンクから購入することもできます。2014年11月にアップデートされた最新バージョン (version: 13) では、213種類の組織および細胞株のサンプルを対象にして、16,975個の遺伝子 (これはヒトの遺伝子数のおよそ7割に相当する) に由来する24,028種類の抗体を用いて測定されたデータが閲覧できます。","タンパク質,遺伝子,発現解析,抗体,データベース","http://youtu.be/woUrIfDZZz4","http://togotv.dbcls.jp/movie/150204TheHumanProteinAtlas.mov","http://doi.org/10.7875/togotv.2015.012","http://togotv.dbcls.jp/images/20150204_0.jpg","150204TheHumanProteinAtlas.mov","thumbnail/20150204_0.jpg","1. タンパク質の通称や遺伝子名での検索 (0分34秒)","2. 目的のタンパク質の基本情報の閲覧 (1分44秒)","3. 目的のタンパク質を抗原とする抗体の基本情報の閲覧 (2分42秒)","4. TISSUE ATLASの見方 (3分35秒)","5. SUBCELL ATLASの見方 (4分46秒)","6. CELL LINE ATLASの見方 (5分49秒)","7. CANCER ATLASの見方 (6分20秒)","8. 測定に使用されている抗体の購入サイトヘの移動 (7分25秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"871","","togotv.2015.011","","20150203","galaxyによるNGS解析@AJACSa三島","本日の統合TVは、2015年1月27日に開催された、統合データベース講習会AJACSadvanced(AJACSa)三島 から、ライフサイエンス統合データベースセンター(DBCLS) 大田 達郎 による「galaxyによるNGS解析」をお送りします。約53分です。","実習,AJACS,Galaxy,ウェブツール","http://youtu.be/CHCJVN-d9qo","http://togotv.dbcls.jp/movie/150203AJACSa_inut.mov","http://doi.org/10.7875/togotv.2015.011","http://togotv.dbcls.jp/images/20150203_0.jpg","150203AJACSa_inut.mov","thumbnail/20150203_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"870","","togotv.2015.010","","20150202","塩基配列データベースの検索とCRISPRターゲット配列設計@AJACSa三島","本日の統合TVは、2015年1月27日に開催された、統合データベース講習会AJACSadvanced(AJACSa)三島 から、ライフサイエンス統合データベースセンター(DBCLS) 内藤 雄樹 による「塩基配列データベースの検索とCRISPRターゲット配列設計」をお送りします。約44分です。","実習,AJACS,塩基配列,CRISPR,データベース","http://youtu.be/-ytKf1afL8Q","http://togotv.dbcls.jp/movie/150202AJACSa_meso.mov","http://doi.org/10.7875/togotv.2015.010","http://togotv.dbcls.jp/images/20150202_0.jpg","150202AJACSa_meso.mov","thumbnail/20150202_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"869","","togotv.2015.009","","20150201","遺伝子発現データ解析(遺伝子発現リファレンスデータセットRefExの使い方@AJACSa三島","本日の統合TVは、2015年1月27日に開催された、統合データベース講習会AJACSadvanced(AJACSa)三島
から、ライフサイエンス統合データベースセンター(DBCLS) 小野 浩雅
による「遺伝子発現データ解析(遺伝子発現リファレンスデータセットRefExの使い方)」をお送りします。約44分です。","実習,AJACS,遺伝子,発現解析","http://youtu.be/Cja1v1Ren4g","http://togotv.dbcls.jp/movie/150201AJACSa_hono.mov","http://doi.org/10.7875/togotv.2015.009","http://togotv.dbcls.jp/images/20150201_0.jpg","150201AJACSa_hono.mov","thumbnail/20150201_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"868","","togotv.2015.008","","20150131","NGSデータベース検索@AJACSa三島","本日の統合TVは、2015年1月27日に開催された、統合データベース講習会AJACSadvanced(AJACSa)三島 から、ライフサイエンス統合データベースセンター(DBCLS) 仲里 猛留 による「NGSデータベース検索」をお送りします。約53分です。","実習,AJACS,NGS,データベース","http://youtu.be/Q7lh1-XoXn0","http://togotv.dbcls.jp/movie/150131AJACSa_nakazato.mov","http://doi.org/10.7875/togotv.2015.008","http://togotv.dbcls.jp/images/20150131_0.jpg","150131AJACSa_nakazato.mov","thumbnail/20150131_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"867","","togotv.2015.007","","20150130","FANTOM5データの再利用法@AJACSa三島","本日の統合TVは、2015年1月27日に開催された、統合データベース講習会AJACSadvanced(AJACSa)三島 から、理化学研究所CLST 機能性ゲノム解析部門 大容量データ管理技術開発ユニット 粕川 雄也 ユニットリーダーによる「FANTOM5データの再利用法」をお送りします。約38分です。","講演,AJACS,発現解析,FANTOM","http://youtu.be/iNL6VBUZLIw","http://togotv.dbcls.jp/movie/150130AJACSa_kasukawa.mov","http://doi.org/10.7875/togotv.2015.007","http://togotv.dbcls.jp/images/20150130_0.jpg","150130AJACSa_kasukawa.mov","thumbnail/20150130_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"866","","togotv.2015.006","","20150129","DDBJ@AJACSa三島","本日の統合TVは、2015年1月27日に開催された、統合データベース講習会AJACSadvanced(AJACSa)三島 から、国立遺伝学研究所 大量遺伝情報研究室 中村 保一 教授 による「DDBJ」をお送りします。約31分です。","講演,AJACS,DDBJ","http://youtu.be/ny9MxHr4Fys","http://togotv.dbcls.jp/movie/150129AJACSa_yn.mov","http://doi.org/10.7875/togotv.2015.006","http://togotv.dbcls.jp/images/20150129_0.jpg","150129AJACSa_yn.mov","thumbnail/20150129_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"865","","togotv.2015.005","","20150128","統合データベースとDBCLSとは?@AJACSa三島","本日の統合TVは、2015年1月27日に開催された、統合データベース講習会AJACSadvanced(AJACSa)三島 から、ライフサイエンス統合データベースセンター(DBCLS) 坊農 秀雅 による「統合データベースとDBCLSとは?」をお送りします。約27分です。","講演,AJACS,DBCLS","http://youtu.be/m7ucqE10H0E","http://togotv.dbcls.jp/movie/150128AJACSa_bono.mov","http://doi.org/10.7875/togotv.2015.005","http://togotv.dbcls.jp/images/20150128_0.jpg","150128AJACSa_bono.mov","thumbnail/20150128_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"864","","togotv.2015.004","","20150109","DDBJパイプラインとGalaxyによるデータ解析@AJACS岩手","本日の統合TVは、2014年12月5日に開催された統合データベース講習会:AJACS岩手から、ライフサイエンス統合データベースセンター(DBCLS) 大田 達郎 による「DDBJパイプラインとGalaxyによるデータ解析」をお送りします。約102分です。","実習,AJACS,Galaxy,パイプライン,DDBJ","http://youtu.be/2NP5Y5ev1mo","http://togotv.dbcls.jp/movie/150109AJACSiwate_ohta.mov","http://doi.org/10.7875/togotv.2015.004","http://togotv.dbcls.jp/images/20150109_0.jpg","150109AJACSiwate_ohta.mov","thumbnail/20150109_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"863","","togotv.2015.003","","20150108","KEGG/GenomeNetのWebサービスの紹介@AJACS岩手","本日の統合TVは、2014年12月5日に開催された統合データベース講習会:AJACS岩手から、ライフサイエンス統合データベースセンター(DBCLS) 守屋 勇樹 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約68分です。","実習,AJACS,KEGG","http://youtu.be/IOlRFVlSA98","http://togotv.dbcls.jp/movie/150108AJACSiwate_moriya.mov","http://doi.org/10.7875/togotv.2015.003","http://togotv.dbcls.jp/images/20150108_0.jpg","150108AJACSiwate_moriya.mov","thumbnail/20150108_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"862","","togotv.2015.002","","20150107","NBDCの紹介とNBDCが提供するサービス@AJACS岩手","本日の統合TVは、2014年12月5日に開催された統合データベース講習会:AJACS岩手から、ライフサイエンス統合データベースセンター(DBCLS)/バイオサイエンスデータベースセンター(NBDC) 箕輪 真理 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約60分です。","実習,AJACS,NBDC,データベース","http://youtu.be/pd5hqo1bpgc","http://togotv.dbcls.jp/movie/150107AJACSiwate_minowa.mov","http://doi.org/10.7875/togotv.2015.002","http://togotv.dbcls.jp/images/20150107_0.jpg","150107AJACSiwate_minowa.mov","thumbnail/20150107_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"861","","togotv.2015.001","","20150106","既存のChIP-seqデータを全て可視化する","本日の統合TVは、2014年12月22日にライフサイエンス統合データベースセンター (DBCLS) にて行われた 沖 真弥 助教 (九州大学大学院医学研究院 発生再生医学分野)によるセミナー「既存のChIP-seqデータを全て可視化する」をお送りします。ChIP-seqデータの可視化ツール SraTailorに関する話題を中心にお話いただきました。約40分です。","講演,ChIP-seq,NGS,発現解析,遺伝子","http://youtu.be/AVoepZIVXbw","http://togotv.dbcls.jp/movie/150106oki.mov","http://doi.org/10.7875/togotv.2015.001","http://togotv.dbcls.jp/images/20150106_0.jpg","150106oki.mov","thumbnail/20150106_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"860","","togotv.2014.097","","20141210","DBCLS SRAを使ってNGSデータを検索する","DBCLS SRAは、公共データベース(SRA NCBI, ENA EBI, DRA DDBJ)に登録されたNGS(次世代シーケンサ)データについて、さまざまな統計情報から閲覧、比較、データのダウンロードができる目次サイトです。生物種、研究目的、測定機器、論文の有無などの条件からNGSデータを含む研究プロジェクトを検索し、それに関連するシーケンスデータをダウンロードすることができます。","DBCLS,NGS,NCBI,EBI,DDBJ,データベース,情報収集","http://youtu.be/ZWHP_yMNp4g","http://togotv.dbcls.jp/movie/141210DBCLSSRA.mov","http://doi.org/10.7875/togotv.2014.097","http://togotv.dbcls.jp/images/20141210_0.jpg","141210DBCLSSRA.mov","thumbnail/20141210_0.jpg","1. 各種統計の紹介 (0分21秒)","2. 条件を指定した研究プロジェクトの検索 (0分32秒)","3. プロジェクトページの見方 (2分17秒)","4. リードデータのクオリティ情報の閲覧とダウンロード (3分28秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"859","","togotv.2014.096","","20141209","AOEを使って遺伝子発現データベースの統計を見ながら検索する","DBCLSが提供する公共遺伝子発現データベースの目次サイトです。生物種や登録年、解析機器などの条件を指定して、遺伝子発現データを検索することができます。ArrayExpressのAccession Numberが検索結果として表示されますが、GEOにもエントリがある場合はそちらが表示されます","DBCLS,発現解析,EBI,データベース,GEO","http://youtu.be/EBfkjEDTG5o","http://togotv.dbcls.jp/movie/141209AOE.mov","http://doi.org/10.7875/togotv.2014.096","http://togotv.dbcls.jp/images/20141209_0.jpg","141209AOE.mov","thumbnail/20141209_0.jpg","1. 生物種の選択 (0分35秒)","2. 検索結果の表示と見方 (0分55秒)","3. 登録年での絞り込み (2分20秒)","4. 計測機器の選択 (2分55秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"858","","togotv.2014.095","","20141124","遺伝子発現DB・解析ツールの紹介@AJACS十勝","本日の統合TVは、2014年9月12日に開催された統合データベース講習会:AJACS十勝から、ライフサイエンス統合データベースセンター(DBCLS) 小野 浩雅 による「遺伝子発現DB・解析ツールの紹介」をお送りします。約125分です。","実習,AJACS,発現解析,データベース,ウェブツール","http://youtu.be/Jp8npL2sdvc","http://togotv.dbcls.jp/movie/141124AJACS50_hono.mov","http://doi.org/10.7875/togotv.2014.095","http://togotv.dbcls.jp/images/20141124_0.jpg","141124AJACS50_hono.mov","thumbnail/20141124_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"857","","togotv.2014.094","","20141123","DDBJ Read Annotation Pipeline の紹介と実習 (RNA-Seq配列のde novoアセンブリを中心に)@AJACS十勝","本日の統合TVは、2014年9月12日に開催された統合データベース講習会:AJACS十勝から、国立遺伝学研究所 大量遺伝情報研究室 長崎 英樹 研究員 による「DDBJ Read Annotation Pipeline の紹介と実習 (RNA-Seq配列のde novoアセンブリを中心に)」をお送りします。約93分です。","実習,AJACS,DDBJ,パイプライン,NGS,RNA-seq","http://youtu.be/thy8-kOi9_o","http://togotv.dbcls.jp/movie/141123AJACS50_nagasaki.mov","http://doi.org/10.7875/togotv.2014.094","http://togotv.dbcls.jp/images/20141123_0.jpg","141123AJACS50_nagasaki.mov","thumbnail/20141123_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"856","","togotv.2014.093","","20141122","KEGG PATHWAYを中心としたパスウェイデータベースの紹介@AJACS十勝","本日の統合TVは、2014年9月12日に開催された統合データベース講習会:AJACS十勝から、ライフサイエンス統合データベースセンター(DBCLS) 河野 信 による「KEGG PATHWAYを中心としたパスウェイデータベースの紹介」をお送りします。約90分です。","実習,AJACS,パスウェイ解析,データベース,KEGG","http://youtu.be/30mB0J7qU9E","http://togotv.dbcls.jp/movie/141122AJACS50_kawano.mov","http://doi.org/10.7875/togotv.2014.093","http://togotv.dbcls.jp/images/20141122_0.jpg","141122AJACS50_kawano.mov","thumbnail/20141122_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"855","","togotv.2014.092","","20141121","NBDCの紹介とNBDCが提供するサービス@AJACS十勝","本日の統合TVは、2014年9月12日に開催された統合データベース講習会:AJACS十勝から、バイオサイエンスデータベースセンター(NBDC) 櫛田 達矢 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約79分です。","実習,AJACS,データベース,NBDC","http://youtu.be/ctclTj9fOWo","http://togotv.dbcls.jp/movie/141121AJACS50_kushida.mov","http://doi.org/10.7875/togotv.2014.092","http://togotv.dbcls.jp/images/20141121_0.jpg","141121AJACS50_kushida.mov","thumbnail/20141121_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"854","","togotv.2014.091","","20141120","PubChemRDF: Towards a semantic (web) description of PubChem","DBCLS BioHackathon 2014 was held in Tohoku Medical Megabank in Sendai and Taikanso in Matsushima, Miyagi, Japan. Main focus of this BioHackathon is the standardization and utilization of human genome information with Semantic Web technologies in addition to our previous efforts on semantic interoperability and standardization of bioinformatics data and Web services. (read more about the past hackathons...) On the first day of the BioHackathon (Nov. 9), public symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. On the first day of the BioHackathon (Nov. 9), public symposium In this talk, Evan Bolton (National Center for Biotechnology Information, US) makes a presentation entitled ""PubChemRDF: Towards a semantic (web) description of PubChem"". (19:00) ","講演,English,BioHackathon,RDF","http://youtu.be/LANaAncRxwk","http://togotv.dbcls.jp/movie/141120BH2014_Evan.mov","http://doi.org/10.7875/togotv.2014.091","http://togotv.dbcls.jp/images/20141120_0.jpg","141120BH2014_Evan.mov","thumbnail/20141120_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"853","","togotv.2014.090","","20141119","PRIDE and ProteomeXchange – Making proteomics data accessible and reusable","DBCLS BioHackathon 2014 was held in Tohoku Medical Megabank in Sendai and Taikanso in Matsushima, Miyagi, Japan. Main focus of this BioHackathon is the standardization and utilization of human genome information with Semantic Web technologies in addition to our previous efforts on semantic interoperability and standardization of bioinformatics data and Web services. (read more about the past hackathons...) On the first day of the BioHackathon (Nov. 9), public symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. In this talk, Yasset Perez-Riverol (European Bioinformatics Institute, UK) makes a presentation entitled ""PRIDE and ProteomeXchange – Making proteomics data accessible and reusable"". (12:47) ","講演,English,BioHackathon","http://youtu.be/cup1HiOKJkA","http://togotv.dbcls.jp/movie/141119BH2014_yasset.mov","http://doi.org/10.7875/togotv.2014.090","http://togotv.dbcls.jp/images/20141119_0.jpg","141119BH2014_yasset.mov","thumbnail/20141119_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"852","","togotv.2014.089","","20141118","Rhea: a reactions database linking biology and chemistry","DBCLS BioHackathon 2014 was held in Tohoku Medical Megabank in Sendai and Taikanso in Matsushima, Miyagi, Japan. Main focus of this BioHackathon is the standardization and utilization of human genome information with Semantic Web technologies in addition to our previous efforts on semantic interoperability and standardization of bioinformatics data and Web services. (read more about the past hackathons...) On the first day of the BioHackathon (Nov. 9), public symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. On the first day of the BioHackathon (Nov. 9), public symposium In this talk, Thierry Lombardot (Swiss Institute of Bioinformatics, Switzerland) makes a presentation entitled ""Rhea: a reactions database linking biology and chemistry"". (14:58)","講演,English,BioHackathon","http://youtu.be/3betj4q8mds","http://togotv.dbcls.jp/movie/141118BH2014_thierry.mov","http://doi.org/10.7875/togotv.2014.089","http://togotv.dbcls.jp/images/20141118_0.jpg","141118BH2014_thierry.mov","thumbnail/20141118_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"851","","togotv.2014.088","","20141117","Text mining for ontology learning and matching","DBCLS BioHackathon 2014 was held in Tohoku Medical Megabank in Sendai and Taikanso in Matsushima, Miyagi, Japan. Main focus of this BioHackathon is the standardization and utilization of human genome information with Semantic Web technologies in addition to our previous efforts on semantic interoperability and standardization of bioinformatics data and Web services. (read more about the past hackathons...) On the first day of the BioHackathon (Nov. 9), public symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. On the first day of the BioHackathon (Nov. 9), public symposium In this talk, Jung-Jae Kim (Nanyang Technological University, Singapore) makes a presentation entitled ""Text mining for ontology learning and matching"". (16:09) ","講演,English,BioHackathon","http://youtu.be/na40gy8Um2U","http://togotv.dbcls.jp/movie/141117BH2014_Jung-Jae.mov","http://doi.org/10.7875/togotv.2014.088","http://togotv.dbcls.jp/images/20141117_0.jpg","141117BH2014_Jung-Jae.mov","thumbnail/20141117_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"850","","togotv.2014.087","","20141116","Semantic integration of orthology resources: beyond the OGO experience","DBCLS BioHackathon 2014 was held in Tohoku Medical Megabank in Sendai and Taikanso in Matsushima, Miyagi, Japan. Main focus of this BioHackathon is the standardization and utilization of human genome information with Semantic Web technologies in addition to our previous efforts on semantic interoperability and standardization of bioinformatics data and Web services. (read more about the past hackathons...) On the first day of the BioHackathon (Nov. 9), public symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. On the first day of the BioHackathon (Nov. 9), public symposium In this talk, Jesualdo Thomas Fernandez Breis (University of Murcia, Spain) makes a presentation entitled ""Semantic integration of orthology resources: beyond the OGO experience"". (9:14)","講演,English,BioHackathon","http://youtu.be/a9gxlSWkCE4","http://togotv.dbcls.jp/movie/141116BH2014_jesualdo.mov","http://doi.org/10.7875/togotv.2014.087","http://togotv.dbcls.jp/images/20141116_0.jpg","141116BH2014_jesualdo.mov","thumbnail/20141116_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"849","","togotv.2014.086","","20141115","Construction of ortholog database using the Semantic Web technology","DBCLS BioHackathon 2014 was held in Tohoku Medical Megabank in Sendai and Taikanso in Matsushima, Miyagi, Japan. Main focus of this BioHackathon is the standardization and utilization of human genome information with Semantic Web technologies in addition to our previous efforts on semantic interoperability and standardization of bioinformatics data and Web services. (read more about the past hackathons...) On the first day of the BioHackathon (Nov. 9), public symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. On the first day of the BioHackathon (Nov. 9), public symposium In this talk, Hirokazu Chiba (National Institute for Basic Biology, Japan) makes a presentation entitled ""Construction of ortholog database using the Semantic Web technology"". (11:02)","講演,English,BioHackathon","http://youtu.be/vIHDq-FrKto","http://togotv.dbcls.jp/movie/141115BH2014_chiba.mov","http://doi.org/10.7875/togotv.2014.086","http://togotv.dbcls.jp/images/20141115_0.jpg","141115BH2014_chiba.mov","thumbnail/20141115_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"848","","togotv.2014.085","","20141114","Introduction to BioJS","DBCLS BioHackathon 2014 was held in Tohoku Medical Megabank in Sendai and Taikanso in Matsushima, Miyagi, Japan. Main focus of this BioHackathon is the standardization and utilization of human genome information with Semantic Web technologies in addition to our previous efforts on semantic interoperability and standardization of bioinformatics data and Web services. (read more about the past hackathons...) On the first day of the BioHackathon (Nov. 9), public symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. On the first day of the BioHackathon (Nov. 9), public symposium In this talk, Leyla Jael Garcia Castro (European Bioinformatics Institute, UK) makes a presentation entitled ""Introduction to BioJS"". (11:04) ","講演,English,BioHackathon","http://youtu.be/LZ6i3tcrMoY","http://togotv.dbcls.jp/movie/141114BH2014_leyla.mov","http://doi.org/10.7875/togotv.2014.085","http://togotv.dbcls.jp/images/20141114_0.jpg","141114BH2014_leyla.mov","thumbnail/20141114_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"847","","togotv.2014.084","","20141113","Identifiers.org: new services to support the Semantic Web community","DBCLS BioHackathon 2014 was held in Tohoku Medical Megabank in Sendai and Taikanso in Matsushima, Miyagi, Japan. Main focus of this BioHackathon is the standardization and utilization of human genome information with Semantic Web technologies in addition to our previous efforts on semantic interoperability and standardization of bioinformatics data and Web services. (read more about the past hackathons...) On the first day of the BioHackathon (Nov. 9), public symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. On the first day of the BioHackathon (Nov. 9), public symposium In this talk, Sarala Wimalaratne (European Bioinformatics Institute, UK) makes a presentation entitled ""Identifiers.org: new services to support the Semantic Web community"". (12:53)","講演,English,BioHackathon","http://youtu.be/LPrUcgJTDVw","http://togotv.dbcls.jp/movie/141113BH2014_sarala.mov","http://doi.org/10.7875/togotv.2014.084","http://togotv.dbcls.jp/images/20141113_0.jpg","141113BH2014_sarala.mov","thumbnail/20141113_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"846","","togotv.2014.083","","20141112","Embracing Semantic Web at EMBL-EBI","DBCLS BioHackathon 2014 was held in Tohoku Medical Megabank in Sendai and Taikanso in Matsushima, Miyagi, Japan. Main focus of this BioHackathon is the standardization and utilization of human genome information with Semantic Web technologies in addition to our previous efforts on semantic interoperability and standardization of bioinformatics data and Web services. (read more about the past hackathons...) On the first day of the BioHackathon (Nov. 9), public symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. On the first day of the BioHackathon (Nov. 9), public symposium In this talk, Simon Jupp (European Bioinformatics Institute, UK) makes a presentation entitled ""Embracing Semantic Web at EMBL-EBI"". (19:06) ","講演,English,BioHackathon","http://youtu.be/H0wlNO7oxu8","http://togotv.dbcls.jp/movie/141112BH2014_jupp.mov","http://doi.org/10.7875/togotv.2014.083","http://togotv.dbcls.jp/images/20141112_0.jpg","141112BH2014_jupp.mov","thumbnail/20141112_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"845","","togotv.2014.082","","20141111","Integrated database and knowledge database in prospective cohort study at
the Tohoku Medical Megabank Project","DBCLS BioHackathon 2014 was held in Tohoku Medical Megabank in Sendai and Taikanso in Matsushima, Miyagi, Japan. Main focus of this BioHackathon is the standardization and utilization of human genome information with Semantic Web technologies in addition to our previous efforts on semantic interoperability and standardization of bioinformatics data and Web services. (read more about the past hackathons...) On the first day of the BioHackathon (Nov. 9), public symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. On the first day of the BioHackathon (Nov. 9), public symposium In this talk, Soichi Ogishima (Tohoku Medical Megabank Organization, Japan) makes a presentation entitled ""Integrated database and knowledge database in prospective cohort study at the Tohoku Medical Megabank Project"". (16:19) ","講演,English,BioHackathon","http://youtu.be/ce9cbxMmqME","http://togotv.dbcls.jp/movie/141111BH2014_ogishima.mov","http://doi.org/10.7875/togotv.2014.082","http://togotv.dbcls.jp/images/20141111_0.jpg","141111BH2014_ogishima.mov","thumbnail/20141111_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"844","","togotv.2014.081","","20141110","Introduction to the ToMMO and What is Happening in the Human Reference
Genome?","DBCLS BioHackathon 2014 was held in Tohoku Medical Megabank in Sendai and Taikanso in Matsushima, Miyagi, Japan. Main focus of this BioHackathon is the standardization and utilization of human genome information with Semantic Web technologies in addition to our previous efforts on semantic interoperability and standardization of bioinformatics data and Web services. (read more about the past hackathons...) On the first day of the BioHackathon (Nov. 9), public symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. On the first day of the BioHackathon (Nov. 9), public symposium In this talk, Masao Nagasaki (Tohoku Medical Megabank Organization, Japan) makes a presentation entitled ""Introduction to the Tohoku Medical Megabank Organization and What is Happening in the Human Reference Genome?"". (21:47) ","講演,English,BioHackathon","http://youtu.be/GH2VzZbscXE","http://togotv.dbcls.jp/movie/141110BH2014_nagasaki.mov","http://doi.org/10.7875/togotv.2014.081","http://togotv.dbcls.jp/images/20141110_0.jpg","141110BH2014_nagasaki.mov","thumbnail/20141110_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"843","","togotv.2014.080","","20141109","Introduction to the NBDC/DBCLS BioHackathon 2014","DBCLS BioHackathon 2014 was held in Tohoku Medical Megabank in Sendai and Taikanso in Matsushima, Miyagi, Japan. Main focus of this BioHackathon is the standardization and utilization of human genome information with Semantic Web technologies in addition to our previous efforts on semantic interoperability and standardization of bioinformatics data and Web services. (read more about the past hackathons...) On the first day of the BioHackathon (Nov. 9), public symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. symposium of the BioHackathon 2014 was held at Tohoku Medical Megabank in Sendai. On the first day of the BioHackathon (Nov. 9), public symposium In this talk, Toshiaki Katayama (Database Center for Life Science, Japan) makes a presentation entitled ""Introduction to the NBDC/DBCLS BioHackathon 2014"". (8:50) ","講演,English,BioHackathon","http://youtu.be/v4tWO2VspdQ","http://togotv.dbcls.jp/movie/141109BH2014_katayama.mov","http://doi.org/10.7875/togotv.2014.080","http://togotv.dbcls.jp/images/20141109_0.jpg","141109BH2014_katayama.mov","thumbnail/20141109_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"842","","togotv.2014.079","","20141106","【NGS速習コース】4. 次世代シークエンサ〜4-4. 次世代シークエンサ実習II (RNA-seq解析)"," 本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、アメリエフ株式会社 山口 昌男 氏による「4. 次世代シークエンサ〜4-4. 次世代シークエンサ実習II (RNA-seq解析)」をお送りします。約2時間です。","実習,AJACS,RNA-seq,発現解析,NGS,NGS速習・ハンズオン","http://youtu.be/jRPDNwJ9x-o","http://togotv.dbcls.jp/movie/141106NGS_yamaguchi.mov","http://doi.org/10.7875/togotv.2014.079","http://togotv.dbcls.jp/images/20141106_0.jpg","141106NGS_yamaguchi.mov","thumbnail/20141106_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"841","","togotv.2014.078","","20141105","【NGS速習コース】4. 次世代シークエンサ〜4-4. 次世代シークエンサ実習II (Reseq解析)","本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、アメリエフ株式会社 山口 昌男 氏による「4. 次世代シークエンサ〜4-4. 次世代シークエンサ実習II (Reseq解析)」をお送りします。約2時間50分です。
","実習,AJACS,Reseq,多型,NGS,NGS速習・ハンズオン","http://youtu.be/t1cctdz8eXM","http://togotv.dbcls.jp/movie/141105NGS_yamaguchi.mov","http://doi.org/10.7875/togotv.2014.078","http://togotv.dbcls.jp/images/20141105_0.jpg","141105NGS_yamaguchi.mov","thumbnail/20141105_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"840","","togotv.2014.077","","20141104","【NGS速習コース】5. ゲノム関連の倫理・法律〜5-1. ゲノム情報倫理概論","本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、バイオサイエンスデータベースセンター(NBDC) 箕輪 真理 による「5. ゲノム関連の倫理・法律〜5-1. ゲノム情報倫理概論」をお送りします。約1時間12分です。","講演,AJACS,倫理,ゲノム,NGS速習・ハンズオン","http://youtu.be/Np9WD3lsFPU","http://togotv.dbcls.jp/movie/141104NGS_minowa.mov","http://doi.org/10.7875/togotv.2014.077","http://togotv.dbcls.jp/images/20141104_0.jpg","141104NGS_minowa.mov","thumbnail/20141104_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"839","","togotv.2014.076","","20141103","【NGS速習コース】6. 分子生命科学〜6-1. 分子生命科学概論、6-2. オミクス概論、6-3. 遺伝/進化概論"," 本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、国際電気通信基礎技術研究所(ATR) 河岡 慎平 主任研究員 による「6. 分子生命科学〜6-1. 分子生命科学概論、6-2.
オミクス概論、6-3. 遺伝/進化概論」をお送りします。約34分です。","講演,AJACS,,NGS速習・ハンズオン","http://youtu.be/-v8I3uM9WDA","http://togotv.dbcls.jp/movie/141103NGS_kawaoka.mov","http://doi.org/10.7875/togotv.2014.076","http://togotv.dbcls.jp/images/20141103_0.jpg","141103NGS_kawaoka.mov","thumbnail/20141103_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"838","","togotv.2014.075","","20141102","【NGS速習コース】4. 次世代シークエンサ〜4-4. 次世代シークエンサ実習II (ChIP-seqの代表的なパイプラインに関する実習)"," 本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、国際電気通信基礎技術研究所(ATR) 河岡 慎平 主任研究員 による「4. 次世代シークエンサ〜4-4. 次世代シークエンサ実習II (ChIP-seqの代表的なパイプラインに関する実習)」をお送りします。約2時間10分です。","実習,AJACS,NGS,UNIX,可視化,ChIP-seq,パイプライン,NGS速習・ハンズオン","http://youtu.be/USESqse-kHg","http://togotv.dbcls.jp/movie/141102NGS_kawaoka.mov","http://doi.org/10.7875/togotv.2014.075","http://togotv.dbcls.jp/images/20141102_0.jpg","141102NGS_kawaoka.mov","thumbnail/20141102_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"837","","togotv.2014.074","","20141101","【NGS速習コース】4. 次世代シークエンサ〜4-3. 次世代シークエンサ実習I","本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、アメリエフ株式会社 山口 昌男 氏による「4. 次世代シークエンサ〜4-3. 次世代シークエンサ実習I」をお送りします。約1時間50分です。","実習,AJACS,NGS,UNIX,可視化,NGS速習・ハンズオン","http://youtu.be/s83cHzvydUM","http://togotv.dbcls.jp/movie/141101NGS_yamaguchi.mov","http://doi.org/10.7875/togotv.2014.074","http://togotv.dbcls.jp/images/20141101_0.jpg","141101NGS_yamaguchi.mov","thumbnail/20141101_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"836","","togotv.2014.073","","20141031","【NGS速習コース】3. データ解析基礎〜3-4. R bioconductor I、3-5. R bioconductor II","本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「3. データ解析基礎〜3-4. R bioconductor I、3-5. R bioconductor II」をお送りします。約3時間15分です。","実習,AJACS,R,Bioconductor,プログラミング,NGS速習・ハンズオン","http://youtu.be/_H95NWHeD9Y","http://togotv.dbcls.jp/movie/141031NGS_kadota.mov","http://doi.org/10.7875/togotv.2014.073","http://togotv.dbcls.jp/images/20141031_0.jpg","141031NGS_kadota.mov","thumbnail/20141031_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"835","","togotv.2014.072","","20141030","【NGS速習コース】3. データ解析基礎〜3-1. R基礎1、3-2. R基礎2、3-3. R各種パッケージ","本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、東京大学大学院農学生命科学研究科 門田 幸二 特任准教授 による「3. データ解析基礎〜3-1. R基礎1、3-2. R基礎2、3-3. R各種パッケージ」をお送りします。約4時間30分です。","実習,AJACS,R,プログラミング,環境設定,NGS速習・ハンズオン","http://youtu.be/7PM7qsmVNZk","http://togotv.dbcls.jp/movie/141030NGS_kadota.mov","http://doi.org/10.7875/togotv.2014.072","http://togotv.dbcls.jp/images/20141030_0.jpg","141030NGS_kadota.mov","thumbnail/20141030_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"834","","togotv.2014.071","","20141029","【NGS速習コース】2. 配列インフォマティクス〜2-2. バイオ系データベース概論","本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、ライフサイエンス統合データベースセンター(DBCLS) 小野 浩雅 による「2. 配列インフォマティクス 2-2. バイオ系データベース概論」をお送りします。約2時間30分です。","実習,AJACS,データベース,ウェブツール,NGS速習・ハンズオン","http://youtu.be/G6E_I3UG3vY","http://togotv.dbcls.jp/movie/141029NGS_hono.mov","http://doi.org/10.7875/togotv.2014.071","http://togotv.dbcls.jp/images/20141029_0.jpg","141029NGS_hono.mov","thumbnail/20141029_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"833","","togotv.2014.070","","20141028","【NGS速習コース】2. 配列インフォマティクス〜2-1. 配列解析基礎","本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、ライフサイエンス統合データベースセンター(DBCLS) 坊農 秀雅 による「2. 配列インフォマティクス 2-1. 配列解析基礎」をお送りします。約3時間です。","実習,AJACS,配列解析,NGS速習・ハンズオン","http://youtu.be/Zw91OjJGR18","http://togotv.dbcls.jp/movie/141028NGS_bono.mov","http://doi.org/10.7875/togotv.2014.070","http://togotv.dbcls.jp/images/20141028_0.jpg","141028NGS_bono.mov","thumbnail/20141028_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"832","","togotv.2014.069","","20141027","【NGS速習コース】1. コンピュータリテラシーとサーバー設計〜1-4. スクリプト言語(Perl)","本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、アメリエフ株式会社 服部 恵美 氏 による「1. コンピュータリテラシーとサーバー設計〜1-4. スクリプト言語(Perl)」をお送りします。約3時間38分です。","実習,AJACS,Perl,プログラミング,環境設定,NGS速習・ハンズオン","http://youtu.be/lYMYlujHrhM","http://togotv.dbcls.jp/movie/141027NGS_hattori.mov","http://doi.org/10.7875/togotv.2014.069","http://togotv.dbcls.jp/images/20141027_0.jpg","141027NGS_hattori.mov","thumbnail/20141027_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"831","","togotv.2014.068","","20141026","【NGS速習コース】1. コンピュータリテラシーとサーバー設計〜1-4. スクリプト言語(シェルスクリプト)","本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、アメリエフ株式会社 服部 恵美 氏による「1. コンピュータリテラシーとサーバー設計 1-4. スクリプト言語(シェルスクリプト)」をお送りします。約4時間です。","実習,AJACS,シェルスクリプト,プログラミング,環境設定,NGS速習・ハンズオン","http://youtu.be/MJ-vUCTIirM","http://togotv.dbcls.jp/movie/141026NGS_hattori.mov","http://doi.org/10.7875/togotv.2014.068","http://togotv.dbcls.jp/images/20141026_0.jpg","141026NGS_hattori.mov","thumbnail/20141026_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"830","","togotv.2014.067","","20141025","【NGS速習コース】1. コンピュータリテラシーとサーバー設計〜1-3. UNIX I(続)〜UNIXの基礎の理解、Linux導入","本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、ライフサイエンス統合データベースセンター(DBCLS) 仲里 猛留 による「1. コンピュータリテラシーとサーバー設計 1-3. UNIX I(続) 〜UNIXの基礎の理解、Linux導入」をお送りします。約5時間13分です。","実習,AJACS,UNIX,Linux,プログラミング,環境設定,NGS速習・ハンズオン","http://youtu.be/z5qwZ_QHk48","http://togotv.dbcls.jp/movie/141025NGS_nakazato.mov","http://doi.org/10.7875/togotv.2014.067","http://togotv.dbcls.jp/images/20141025_0.jpg","141025NGS_nakazato.mov","thumbnail/20141025_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"829","","togotv.2014.066","","20141024","【NGS速習コース】1. コンピュータリテラシーとサーバー設計〜1-3. Unix I UNIXの基礎の理解、Linux導入","本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、ライフサイエンス統合データベースセンター(DBCLS) 仲里 猛留 による「1. コンピュータリテラシーとサーバー設計 1-3. UNIX I 〜UNIXの基礎の理解、Linux導入」をお送りします。約3時間です。","実習,AJACS,UNIX,Linux,プログラミング,環境設定,NGS速習・ハンズオン","http://youtu.be/0hH3GFczAfE","http://togotv.dbcls.jp/movie/141024NGS_nakazato.mov","http://doi.org/10.7875/togotv.2014.066","http://togotv.dbcls.jp/images/20141024_0.jpg","141024NGS_nakazato.mov","thumbnail/20141024_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"828","","togotv.2014.065","","20141023","【NGS速習コース】1. コンピュータリテラシーとサーバー設計〜1-1. OS、ハード構成、1-2. ネットワーク基礎","本日の統合TVは、2014年9月1-12日に開催された、バイオインフォマティクス人材育成カリキュラム(次世代シークエンサ)速習コース から、国立遺伝学研究所 大量遺伝情報研究室 中村 保一 教授 による「1. コンピュータリテラシーとサーバー設計〜1-1. OS、ハード構成、1-2. ネットワーク基礎」をお送りします。約1時間30分です。","講演,AJACS,環境設定,NGS速習・ハンズオン","http://youtu.be/cv_9yTryIv8","http://togotv.dbcls.jp/movie/141023NGS_yn.mov","http://doi.org/10.7875/togotv.2014.065","http://togotv.dbcls.jp/images/20141023_0.jpg","141023NGS_yn.mov","thumbnail/20141023_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"827","","togotv.2014.064","","20141022","PDBjとPDBj-BMRBにおける生体高分子の構造とダイナミクス情報","本日の統合TVは、2014年10月5日に開催されたトーゴーの日シンポジウム2014〜第2段階に入ったライフサイエンスデータベースの統合〜 から、大阪大学蛋白質研究所 藤原 敏道 教授 による「PDBjとPDBj-BMRBにおける生体高分子の構造とダイナミクス情報」をお送りします。約22分です。","講演,トーゴーの日,PDBj","http://youtu.be/I6RwlSNFhRk","http://togotv.dbcls.jp/movie/141022togoday_fujiwara.mov","http://doi.org/10.7875/togotv.2014.064","http://togotv.dbcls.jp/images/20141022_0.jpg","141022togoday_fujiwara.mov","thumbnail/20141022_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"826","","togotv.2014.063","","20141021","生命動態システム科学のデータベースの統合化の現状と今後の展望","本日の統合TVは、2014年10月5日に開催されたトーゴーの日シンポジウム2014〜第2段階に入ったライフサイエンスデータベースの統合〜 から、理化学研究所生命システム研究センター 大波 修一 チームリーダー による「生命動態システム科学のデータベースの統合化の現状と今後の展望」をお送りします。約22分です。","講演,トーゴーの日,データベース","http://youtu.be/p_9VuQWW-Mc","http://togotv.dbcls.jp/movie/141021togoday_ohnami.mov","http://doi.org/10.7875/togotv.2014.063","http://togotv.dbcls.jp/images/20141021_0.jpg","141021togoday_ohnami.mov","thumbnail/20141021_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"825","","togotv.2014.062","","20141020","糖鎖統合データベースおよび国際糖鎖構造リポジトリの開発","本日の統合TVは、2014年10月5日に開催されたトーゴーの日シンポジウム2014〜第2段階に入ったライフサイエンスデータベースの統合〜 から、創価大学工学部生命情報工学科 木下 聖子フローラ 教授 による「糖鎖統合データベースおよび国際糖鎖構造リポジトリの開発」をお送りします。約17分です。","講演,トーゴーの日,データベース","http://youtu.be/M4-BjegcMgE","http://togotv.dbcls.jp/movie/141020togoday_kinoshita.mov","http://doi.org/10.7875/togotv.2014.062","http://togotv.dbcls.jp/images/20141020_0.jpg","141020togoday_kinoshita.mov","thumbnail/20141020_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"824","","togotv.2014.061","","20141019","表現型情報で生物をつなぐフェノーム統合データベース","本日の統合TVは、2014年10月5日に開催されたトーゴーの日シンポジウム2014〜第2段階に入ったライフサイエンスデータベースの統合〜から、理化学研究所バイオリソースセンター 桝屋 啓志 ユニットリーダー による「表現型情報で生物をつなぐフェノーム統合データベース」をお送りします。約17分です。","講演,トーゴーの日,データベース","http://youtu.be/SSR94FVyzj0","http://togotv.dbcls.jp/movie/141019togoday_masuya.mov","http://doi.org/10.7875/togotv.2014.061","http://togotv.dbcls.jp/images/20141019_0.jpg","141019togoday_masuya.mov","thumbnail/20141019_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"823","","togotv.2014.060","","20141018","メタボロミクスの国際連携とデータ共有","本日の統合TVは、2014年10月5日に開催されたトーゴーの日シンポジウム2014〜第2段階に入ったライフサイエンスデータベースの統合〜から、理化学研究所環境資源科学研究センター 有田正規 チームリーダー による「メタボロミクスの国際連携とデータ共有」をお送りします。約19分です。","講演,トーゴーの日,メタボローム","http://youtu.be/TH0gEshvUmU","http://togotv.dbcls.jp/movie/141018togoday_arita.mov","http://doi.org/10.7875/togotv.2014.060","http://togotv.dbcls.jp/images/20141018_0.jpg","141018togoday_arita.mov","thumbnail/20141018_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"822","","togotv.2014.059","","20141017","植物ゲノム情報の活用基盤の構築","本日の統合TVは、2014年10月5日に開催されたトーゴーの日シンポジウム2014〜第2段階に入ったライフサイエンスデータベースの統合〜から、かずさDNA研究所 田畑 哲之 所長 による「植物ゲノム情報の活用基盤の構築」をお送りします。約22分です。","講演,トーゴーの日,ゲノム,植物","http://youtu.be/nDgmBEXPVYc","http://togotv.dbcls.jp/movie/141017togoday_tabata.mov","http://doi.org/10.7875/togotv.2014.059","http://togotv.dbcls.jp/images/20141017_0.jpg","141017togoday_tabata.mov","thumbnail/20141017_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"821","","togotv.2014.058","","20141016","微生物統合DB「MicrobeDB.jp」の超高度化推進","本日の統合TVは、2014年10月5日に開催されたトーゴーの日シンポジウム2014〜第2段階に入ったライフサイエンスデータベースの統合〜から、東京工業大学地球生命研究所 黒川 顕 教授 による「微生物統合DB「MicrobeDB.jp」の超高度化推進」をお送りします。約17分です。","講演,トーゴーの日,微生物,データベース","http://youtu.be/X3owNweQjgQ","http://togotv.dbcls.jp/movie/141016togoday_kurokawa.mov","http://doi.org/10.7875/togotv.2014.058","http://togotv.dbcls.jp/images/20141016_0.jpg","141016togoday_kurokawa.mov","thumbnail/20141016_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"820","","togotv.2014.057","","20141015","DBCLSにおけるデータベースRDF化への取り組みと今後の展望","本日の統合TVは、2014年10月5日に開催されたトーゴーの日シンポジウム2014〜第2段階に入ったライフサイエンスデータベースの統合〜から、ライフサイエンス統合データベースセンター(DBCLS) 山口 敦子 による「DBCLSにおけるデータベースRDF化への取り組みと今後の展望」をお送りします。約17分です。","講演,トーゴーの日,DBCLS,RDF,データベース","http://youtu.be/Ml19pCScrTI","http://togotv.dbcls.jp/movie/141015togoday_yamaguchi.mov","http://doi.org/10.7875/togotv.2014.057","http://togotv.dbcls.jp/images/20141015_0.jpg","141015togoday_yamaguchi.mov","thumbnail/20141015_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"819","","togotv.2014.056","","20141014","ヒトゲノム臨床応用研究に向けたオミクスデータ統合","本日の統合TVは、2014年10月5日に開催されたトーゴーの日シンポジウム2014〜第2段階に入ったライフサイエンスデータベースの統合〜から、東京大学大学院新領域創成科学研究科 菅野 純夫 教授 による「ヒトゲノム臨床応用研究に向けたオミクスデータ統合」をお送りします。約18分です。","講演,トーゴーの日,ゲノム","http://youtu.be/TFfBTSTfC6U","http://togotv.dbcls.jp/movie/141014togoday_sugano.mov","http://doi.org/10.7875/togotv.2014.056","http://togotv.dbcls.jp/images/20141014_0.jpg","141014togoday_sugano.mov","thumbnail/20141014_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"818","","togotv.2014.055","","20141013","個別化医療に向けたヒトゲノムバリエーションデータベース","本日の統合TVは、2014年10月5日に開催されたトーゴーの日シンポジウム2014〜第2段階に入ったライフサイエンスデータベースの統合〜から、徳永 勝士 教授 による「個別化医療に向けたヒトゲノムバリエーションデータベース」をお送りします。約22分です。","講演,トーゴーの日,ゲノム,多型","http://youtu.be/_XuVmc9VIa8","http://togotv.dbcls.jp/movie/141013togoday_tokunaga.mov","http://doi.org/10.7875/togotv.2014.055","http://togotv.dbcls.jp/images/20141013_0.jpg","141013togoday_tokunaga.mov","thumbnail/20141013_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"817","","togotv.2014.054","","20141012","ゲノムと疾患・医薬品をつなぐ相互作用ユニットの知識ベース","本日の統合TVは、2014年10月5日に開催されたトーゴーの日シンポジウム2014〜第2段階に入ったライフサイエンスデータベースの統合〜から、京都大学化学研究所 金久 實 特任教授 による「ゲノムと疾患・医薬品をつなぐ相互作用ユニットの知識ベース」をお送りします。約19分です。","講演,トーゴーの日,ゲノム,疾患情報","http://youtu.be/qu7_WaQc-M4","http://togotv.dbcls.jp/movie/141012togoday_kanehisa.mov","http://doi.org/10.7875/togotv.2014.054","http://togotv.dbcls.jp/images/20141012_0.jpg","141012togoday_kanehisa.mov","thumbnail/20141012_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"816","","togotv.2014.053","","20141011","第2段階を迎えたNBDC","本日の統合TVは、2014年10月5日に開催されたトーゴーの日シンポジウム2014〜第2段階に入ったライフサイエンスデータベースの統合〜から、科学技術振興機構 バイオサイエンスデータベースセンター(NBDC) 高木 利久 センター長 による「第2段階を迎えたNBDC」をお送りします。約22分です。","講演,トーゴーの日,NBDC","http://youtu.be/5LhOuw1wK_s","http://togotv.dbcls.jp/movie/141011togoday_takagi.mov","http://doi.org/10.7875/togotv.2014.053","http://togotv.dbcls.jp/images/20141011_0.jpg","141011togoday_takagi.mov","thumbnail/20141011_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"815","","togotv.2014.052","","20141010","BioMart v0.9を使い倒す 〜Enrichment analysis編〜","BioMartは、European Bioinformatics Institute(EBI),Ontario Institute for Cancer Research (OICR), San Raffaele Scientific Institute(SRSI)が共同で開発しているクエリ指向型データ管理システム-です。BioMartにはソフトウェア版もありますが、この動画ではウェブブラウザで利用で-きるポータルの使い方を紹介しています。今回は、v0.9で新たな機能として追加された""E-NRICHMENT ANALYSIS”の使い方を説明しています。サンプルとしてメラニン細胞と線維芽細胞から作成したiPS細胞の遺伝子発現データ(GSE23034)を用いています。クエリに入力する遺伝子リストは、GEO2Rを用いて2種の細胞間で有意差があった遺伝子上位100個のマイクロアレイIDを取得し、そこからRefseqIDを抽出したものを使用しています。","ゲノム,遺伝子,塩基配列,発現解析,可視化,ウェブツール","http://youtu.be/hXgwVJUBxeE","http://togotv.dbcls.jp/movie/141010BioMart0.9EA.mov","http://doi.org/10.7875/togotv.2014.052","http://togotv.dbcls.jp/images/20141010_0.jpg","141010BioMart0.9EA.mov","thumbnail/20141010_0.jpg","1. 生物種の選択 (0分34秒)","2. 解析したい遺伝子セットの入力 (0分50秒)","3. BackgroundやFilterの設定 (1分54秒)","4. 解析結果の見方 (2分42秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"814","","togotv.2014.051","","20141009","遺伝子発現DB・解析ツールの紹介@AJACS阿波"," 本日の統合TVは、2014年8月20日に開催された統合データベース講習会:AJACS阿波から、ライフサイエンス統合データベースセンター 小野 浩雅 による「遺伝子発現DB・解析ツールの紹介」をお送りします。約108分です。","実習,AJACS,発現解析,データベース,ウェブツール","http://youtu.be/3PUulRi63Q8","http://togotv.dbcls.jp/movie/141009AJACSawa_hono.mov","http://doi.org/10.7875/togotv.2014.051","http://togotv.dbcls.jp/images/20141009_0.jpg","141009AJACSawa_hono.mov","thumbnail/20141009_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"813","","togotv.2014.050","","20141008","KEGG PATHWAYを中心としたKEGG、GenomeNetの使い方及びメタボローム関連データベースの紹介@AJACS阿波","本日の統合TVは、2014年8月20日に開催された統合データベース講習会:AJACS阿波から、ライフサイエンス統合データベースセンター 時松 敏明 による「KEGG PATHWAYを中心としたKEGG、GenomeNetの使い方及びメタボローム関連データベースの紹介」をお送りします。約80分です。","実習,AJACS,KEGG,メタボローム","http://youtu.be/JnF-7dq-5rk","http://togotv.dbcls.jp/movie/141008AJACSawa_tokimatsu.mov","http://doi.org/10.7875/togotv.2014.050","http://togotv.dbcls.jp/images/20141008_0.jpg","141008AJACSawa_tokimatsu.mov","thumbnail/20141008_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"812","","togotv.2014.049","","20141007","蛋白質立体構造データの使い方@AJACS阿波"," 本日の統合TVは、2014年8月20日に開催された統合データベース講習会:AJACS阿波から、大阪大学蛋白質研究所 金城 玲 准教授による「蛋白質立体構造データの使い方」をお送りします。約98分です。","実習,AJACS,タンパク質,構造解析,データベース","http://youtu.be/BponjLoN5Bw","http://togotv.dbcls.jp/movie/141007AJACSawa_kinjo.mov","http://doi.org/10.7875/togotv.2014.049","http://togotv.dbcls.jp/images/20141007_0.jpg","141007AJACSawa_kinjo.mov","thumbnail/20141007_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"811","","togotv.2014.048","","20141006","NBDCの紹介とNBDCが提供するサービス@AJACS阿波","本日の統合TVは、2014年8月20日に開催された統合データベース講習会:AJACS阿波から、バイオサイエンスデータベースセンター(NBDC) 櫛田 達矢 による「NBDCの紹介とNBDCが提供するサービス」をお送りします。約66分です。","実習,AJACS,NBDC","http://youtu.be/9ucRc_GzBLk","http://togotv.dbcls.jp/movie/141006AJACSawa_kushida.mov","http://doi.org/10.7875/togotv.2014.048","http://togotv.dbcls.jp/images/20141006_0.jpg","141006AJACSawa_kushida.mov","thumbnail/20141006_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"810","","togotv.2014.047","","20140912","Cytoscapeを使ったデータの可視化@AJACS信濃","本日の統合TVは、2014年7月17日に開催された統合データベース講習会:AJACS信濃から、バイオサイエンスデータベースセンター(NBDC) 櫛田 達矢 による「Cytoscapeを使ったデータの可視化」をお送りします。約100分です。","実習,AJACS,可視化,パスウェイ解析","http://youtu.be/pC4m-YxBdtI","http://togotv.dbcls.jp/movie/140912AJACSsinshu_kushida.mov","http://doi.org/10.7875/togotv.2014.047","http://togotv.dbcls.jp/images/20140912_0.jpg","140912AJACSsinshu_kushida.mov","thumbnail/20140912_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"809","","togotv.2014.046","","20140911","大規模ゲノムコホート研究に基づく日本人遺伝子変異データベース@AJACS信濃","本日の統合TVは、2014年7月17日に開催された統合データベース講習会:AJACS信濃から、京都大学大学院医学研究科附属ケ・ノム医学センター 日笠 幸一郎 助教 による「大規模ゲノムコホート研究に基づく日本人遺伝子変異データベース」をお送りします。約46分です。","実習,AJACS,データベース","http://youtu.be/1RXEFDGtYSI","http://togotv.dbcls.jp/movie/140911AJACSsinshu_higasa.mov","http://doi.org/10.7875/togotv.2014.046","http://togotv.dbcls.jp/images/20140911_0.jpg","140911AJACSsinshu_higasa.mov","thumbnail/20140911_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"808","","togotv.2014.045","","20140910","遺伝子発現DB・解析ツールの紹介@AJACS信濃","本日の統合TVは、2014年7月17日に開催された統合データベース講習会:AJACS信濃から、ライフサイエンス統合データベースセンター(DBCLS) 小野 浩雅 による「遺伝子発現DB・解析ツールの紹介」をお送りします。約68分です。","実習,AJACS,発現解析,データベース,ウェブツール","http://youtu.be/jflW67wrOzk","http://togotv.dbcls.jp/movie/140910AJACSsinshu_hono.mov","http://doi.org/10.7875/togotv.2014.045","http://togotv.dbcls.jp/images/20140910_0.jpg","140910AJACSsinshu_hono.mov","thumbnail/20140910_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"807","","togotv.2014.044","","20140909","次世代シーケンサー (NGS) と関連するデータベース・ツール@AJACS信濃","本日の統合TVは、2014年7月17日に開催された統合データベース講習会:AJACS信濃から、ライフサイエンス統合データベースセンター(DBCLS) 仲里 猛留 による「次世代シーケンサー (NGS) と関連するデータベース・ツール」をお送りします。約71分です。","実習,AJACS,NGS,データベース","http://youtu.be/ImdmhnxoMBc","http://togotv.dbcls.jp/movie/140909AJACSsinshu_nakazato.mov","http://doi.org/10.7875/togotv.2014.044","http://togotv.dbcls.jp/images/20140909_0.jpg","140909AJACSsinshu_nakazato.mov","thumbnail/20140909_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"806","","togotv.2014.043","","20140908","NBDCとNBDCが提供するサービス@AJACS信濃","本日の統合TVは、2014年7月17日に開催された統合データベース講習会:AJACS信濃から、バイオサイエンスデータベースセンター(NBDC) 箕輪 真理 による「NBDCとNBDCが提供するサービス」をお送りします。約64分です。","実習,AJACS,NBDC","http://youtu.be/HV5eMsO-ISA","http://togotv.dbcls.jp/movie/140908AJACSsinshu_minowa.mov","http://doi.org/10.7875/togotv.2014.043","http://togotv.dbcls.jp/images/20140908_0.jpg","140908AJACSsinshu_minowa.mov","thumbnail/20140908_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"805","","togotv.2014.042","","20140830","BioMart v0.9を使い倒す 〜遺伝子情報や配列を取得する〜","BioMartは、European Bioinformatics Institute(EBI), Ontario Institute for Cancer Research (OICR), San Raffaele Scientific Institute(SRSI)が共同で開発しているクエリ指向型データ管理システムです。 BioMartにはソフトウェア版もありますが、この動画ではウェブブラウザで利用できるポータルの使い方を紹介しています。v0.9では新たな機能として""ENRICHMENT ANALYSIS""が追加されましたが、今回は以前のバージョンからある""BROWSE DATA"", ""ID CONVERSION"", ""SEQUENCE RETRIEVAL""という3つの機能を紹介しています。例として、ヒトとマウスが共通して持つ全遺伝子の遺伝子座のリストを取得する方法と、あるデータベースのIDを別のデータベースのIDに変換する方法、マウスの全遺伝子の上流1000塩基の配列を取得する方法を紹介しています。","ゲノム,遺伝子,塩基配列,データベース","http://youtu.be/Cc43P2fz8_k","http://togotv.dbcls.jp/movie/140830BioMart0.9basic.mov","http://doi.org/10.7875/togotv.2014.042","http://togotv.dbcls.jp/images/20140830_0.jpg","140830BioMart0.9basic.mov","thumbnail/20140830_0.jpg","1. BROWSE DATA の使い方 (0分25秒)","2. ID CONVERSION の使い方 (4分32秒)","3. SEQUENCE RETRIEVAL の使い方 (5分43秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"804","","togotv.2014.041","","20140822","次世代シーケンスデータの視覚化@AJACS出島"," 本日の統合TVは、2014年7月3日に開催された統合データベース講習会:AJACS出島から、九州大学 生体防御医学研究所 附属生体多階層システム研究センター 佐藤 哲也 助教による「次世代シーケンスデータの視覚化」をお送りします。約115分です。","実習, AJACS,NGS,可視化","http://youtu.be/RfZr-MvZYiw","http://togotv.dbcls.jp/movie/140822AJACSdejima_sato.mov","http://doi.org/10.7875/togotv.2014.041","http://togotv.dbcls.jp/images/20140822_0.jpg","140822AJACSdejima_sato.mov","thumbnail/20140822_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"803","","togotv.2014.040","","20140821","化合物データベース・パスウェイデータベースの紹介@AJACS出島","本日の統合TVは、2014年7月3日に開催された統合データベース講習会:AJACS出島から、ライフサイエンス統合データベースセンター 時松 敏明 による「化合物データベース・パスウェイデータベースの紹介」をお送りします。約120分です。","実習, AJACS,化合物,パスウェイ解析","http://youtu.be/Lp_urSh_4H0","http://togotv.dbcls.jp/movie/140821AJACSdejima_tokimatsu.mov","http://doi.org/10.7875/togotv.2014.040","http://togotv.dbcls.jp/images/20140821_0.jpg","140821AJACSdejima_tokimatsu.mov","thumbnail/20140821_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"802","","togotv.2014.039","","20140717","Wolfram Alpha を高機能関数電卓として使う その3:微分・積分・方程式編","Wolfram Alphaは、ウルフラム・リサーチ社が開発した質問応答システムです. ユーザがテキストフィールドに質問や計算リクエスト、キーワードなどを入力すると、構造化されたデータを使って計算、検索し、直接答えを返してくれる新型の検索エンジンです。検索可能な分野は、数学をはじめ、統計とデータ解析、化学、物理、天文学、工学、素材、生物学、計算機科学など多岐にわたっており、さまざまな検索方法や使い方があります。今回は、前々回の基本操作編および前回の数式入力編の続編として、微分や積分、方程式などの一見すると入力しづらいような複雑な数式について、どのように検索窓に入力すればよいかについて実例をもとに紹介します。","可視化,ウェブツール","http://youtu.be/x3i50eCeGAw","http://togotv.dbcls.jp/movie/140717wolframalpha3.mov","http://doi.org/10.7875/togotv.2014.039","http://togotv.dbcls.jp/images/20140717_0.jpg","140717wolframalpha3.mov","thumbnail/20140717_0.jpg","1. 微分 (1分41秒)","2. 積分 (4分8秒)","3. 極限 (5分43秒)","4. 方程式の解 (6分20秒)","5. 因数分解・展開 (8分36秒)","6. 行列 (9分29秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"801","","togotv.2014.038","","20140716","Integrative Genomics Viewer IGVを使い倒す 〜マッピングデータを可視化する〜","Integrative Genomics Viewer (IGV)は、Broad Institute が提供する、Javaアプリケーションで動くゲノムビューワです。ゲノムの導入など、基本的な操作方法は基本編を参考にしてください。今回はBowtie2などのツールによって生成されたマッピングファイルをIGV上で可視化する方法を主に紹介しています。可視化の準備のために用いるigvtoolsはCUI版とGUI版のものがありますが、動画ではGUI版について紹介しています。また、タブ区切りフォーマットのデータをバイナリ化する方法も紹介しています(対応する拡張子についてはhttp://www.broadinstitute.org/software/igv/FileFormats"" %>を参照してください)。 後半では、Bowtie2"" %>を用いてゲノム配列とシーケンスリードデータからマッピングファイルを生成する方法も簡単に紹介しています。","ゲノム,可視化,ソフトウェア","http://youtu.be/U-zx4724zE8","http://togotv.dbcls.jp/movie/140716IGV_igvtools.mov","http://doi.org/10.7875/togotv.2014.038","http://togotv.dbcls.jp/images/20140716_0.jpg","140716IGV_igvtools.mov","thumbnail/20140716_0.jpg","1. マッピングファイルのソート、インデックス作成 (0分54秒)","2. マッピングファイルのアラインメント表示とその見方 (1分46秒)","3. igvtoolsのcountによるcoverageのデータファイルの作成 (4分15秒)","4. igvtoolsのtoTDFによるタブ区切りテキストのバイナリ化 (5分17秒)","5. おまけ:Bowtie2の導入からSAMファイルの作成まで (6分14秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"800","","togotv.2014.037","","20140715","DDBJ Nucleotide Sequence Submission System の紹介","本日の統合TVは、2014年6月12日に開催された第29回 DDBJing 講習会 in 三島から、DDBJ 小菅 武英 アノテーターによる「DDBJ Nucleotide Sequence Submission Systemの紹介」をお送りします。約53分です。","講演, DDBJing, DDBJ,塩基配列","http://youtu.be/JTCV7bG_KJc","http://togotv.dbcls.jp/movie/140715DDBJing_kosuge.mov","http://doi.org/10.7875/togotv.2014.037","http://togotv.dbcls.jp/images/20140715_0.jpg","140715DDBJing_kosuge.mov","thumbnail/20140715_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"799","","togotv.2014.036","","20140714","Mass Submission System の紹介","本日の統合TVは、2014年6月12日に開催された第29回 DDBJing 講習会 in 三島から、DDBJ 李 慶範 アノテーターによる「Mass Submission Systemの紹介」をお送りします。約38分です。","講演, DDBJing, DDBJ","http://youtu.be/KIs8t_XIA0M","http://togotv.dbcls.jp/movie/140714DDBJing_li.mov","http://doi.org/10.7875/togotv.2014.036","http://togotv.dbcls.jp/images/20140714_0.jpg","140714DDBJing_li.mov","thumbnail/20140714_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"798","","togotv.2014.035","","20140713","DDBJ Sequence Read Archive の紹介","本日の統合TVは、2014年6月12日に開催された第29回 DDBJing 講習会 in 三島から、DDBJ 古屋 典子 アノテーターによる「DDBJ Sequence Read Archiveの紹介」をお送りします。約38分です。","講演, DDBJing, DDBJ,塩基配列,NGS,データベース","http://youtu.be/QYtqEOBI2z8","http://togotv.dbcls.jp/movie/140713DDBJing_furuya.mov","http://doi.org/10.7875/togotv.2014.035","http://togotv.dbcls.jp/images/20140713_0.jpg","140713DDBJing_furuya.mov","thumbnail/20140713_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"797","","togotv.2014.034","","20140712","BioProject と BioSample の紹介","本日の統合TVは、2014年6月12日に開催された第29回 DDBJing 講習会 in 三島から、DDBJ 児玉 悠一 アノテーターによる「BioProjectとBioSampleの紹介」をお送りします。約20分です。","講演, DDBJing, DDBJ,塩基配列,ゲノム,データベース","http://youtu.be/edak4OwVSIk","http://togotv.dbcls.jp/movie/140712DDBJing_kodama.mov","http://doi.org/10.7875/togotv.2014.034","http://togotv.dbcls.jp/images/20140712_0.jpg","140712DDBJing_kodama.mov","thumbnail/20140712_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"796","","togotv.2014.033","","20140711","NBDCヒトデータベースを介したJapanese Genotype-phenotype Archive の
データ共有の審査過程と登録手続き(2)","本日の統合TVは、2014年6月12日に開催された第29回 DDBJing 講習会 in 三島から、DDBJ 児玉 悠一 アノテーターによる「NBDCヒトデータベースを介したJapanese Genotype-phenotype Archive のデータ共有の審査過程と登録手続き(2)」をお送りします。約20分です。","講演, DDBJing, NBDC,データベース","http://youtu.be/OeCMeldqBu4","http://togotv.dbcls.jp/movie/140711DDBJing_kodamaJGA.mov","http://doi.org/10.7875/togotv.2014.033","http://togotv.dbcls.jp/images/20140711_0.jpg","140711DDBJing_kodamaJGA.mov","thumbnail/20140711_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"795","","togotv.2014.032","","20140710","NBDCヒトデータベースを介したJapanese Genotype-phenotype Archive の
データ共有の審査過程と登録手続き(1)","本日の統合TVは、2014年6月12日に開催された第29回 DDBJing 講習会 in 三島から、JST バイオサイエンスデータベースセンター 箕輪 真理による「NBDCヒトデータベースを介したJapanese Genotype-phenotype Archive のデータ共有の審査過程と登録手続き(1)」をお送りします。約33分です。","講演, DDBJing, NBDC,データベース","http://youtu.be/npSw74bKPHA","http://togotv.dbcls.jp/movie/140710DDBJing_minowa.mov","http://doi.org/10.7875/togotv.2014.032","http://togotv.dbcls.jp/images/20140710_0.jpg","140710DDBJing_minowa.mov","thumbnail/20140710_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"794","","togotv.2014.031","","20140709","NIG スーパーコンピュータの紹介","本日の統合TVは、2014年6月12日に開催された第29回 DDBJing 講習会 in 三島から、国立遺伝学研究所 石川 直史 氏による「NIGスーパーコンピュータの紹介」をお送りします。約11分です。","講演, DDBJing,スパコン","http://youtu.be/rUOP4eRNnbQ","http://togotv.dbcls.jp/movie/140709DDBJing_ishikawa.mov","http://doi.org/10.7875/togotv.2014.031","http://togotv.dbcls.jp/images/20140709_0.jpg","140709DDBJing_ishikawa.mov","thumbnail/20140709_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"793","","togotv.2014.030","","20140708","公共データベースを使い倒した知のめぐりのよい生命科学研究","本日の統合TVは、2014年6月12日に開催された第29回 DDBJing 講習会 in 三島から、DBCLS 坊農 秀雅 による「公共データベースを使い倒した知のめぐりのよい生命科学研究」をお送りします。約59分です。","講演, DDBJing, DBCLS,データベース","http://youtu.be/qq3uql8xGcA","http://togotv.dbcls.jp/movie/140708DDBJing_bono.mov","http://doi.org/10.7875/togotv.2014.030","http://togotv.dbcls.jp/images/20140708_0.jpg","140708DDBJing_bono.mov","thumbnail/20140708_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"792","","togotv.2014.029","","20140707","DDBJ, スパコンの紹介, 大量配列情報解析","本日の統合TVは、2014年6月12日に開催された第29回 DDBJing 講習会 in 三島から、国立遺伝学研究所 中村 保一 教授による「DDBJ、スパコンの紹介、大量配列情報解析」をお送りします。約32分です。","講演, DDBJing, DDBJ,配列解析, スパコン,NGS","http://youtu.be/zSTANLlMdwE","http://togotv.dbcls.jp/movie/140707DDBJing_yn.mov","http://doi.org/10.7875/togotv.2014.029","http://togotv.dbcls.jp/images/20140707_0.jpg","140707DDBJing_yn.mov","thumbnail/20140707_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"791","","togotv.2014.028","","20140604","Wolfram Alpha を高機能関数電卓として使う その2:数式入力編","Wolfram Alphaは、ウルフラム・リサーチ社が開発した質問応答システムです。 ユーザがテキストフィールドに質問や計算リクエスト、キーワードなどを入力すると、構造化されたデータを使って計算、検索し、直接答えを返してくれる新型の検索エンジンです。検索可能な分野は、数学をはじめ、統計とデータ解析、化学、物理、天文学、工学、素材、生物学、計算機科学など多岐にわたっており、さまざまな検索方法や使い方があります。今回は、前回の基本操作編の続編として、基本的な四則演算をはじめ、高度かつ複雑な数式についてもどのように検索窓に入力すればよいかについて実例をもとに紹介します。","ウェブツール,可視化","http://youtu.be/Job3ADfcj8g","http://togotv.dbcls.jp/movie/140604wolframalpha2.mov","http://doi.org/10.7875/togotv.2014.028","http://togotv.dbcls.jp/images/20140604_0.jpg","140604wolframalpha2.mov","thumbnail/20140604_0.jpg","1. 大学入試問題の不定積分を解くにはどう入力したらよいか (1分53秒)","2. 四則計算の基本 (3分48秒)","3. グラフと図形 (5分10秒)","4. 3Dプロットの作成 (9分11秒)","5. 不定積分を解く (11分28秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"790","","togotv.2014.027","","20140529","Integrative Genomics Viewer IGVを使い倒す 〜基本編〜","Integrative Genomics Viewer (IGV)は、Broad Institute が提供する、Javaアプリケーションで動くゲノムビューワです。染色体とエクソンのデータは ""***.genome"" というファイルに格納されていて、これは配列データ(FASTAファイル)とともにIGV上で取得することができます。その他にも様々な形式のファイルを同時に表示することができます(対応する拡張子についてはhttp://www.broadinstitute.org/software/igv/FileFormats を参照してください)。必要なファイルが手元にあれば、すべての作業を自分のマシン上で行うことができるので、これらの情報を非常に速く表示することができます。今回は基本編として、ソフトウェアのインストール、アノテーションデータの読み込み、表示の切替、検索、特定の塩基配列の取得など、基本的な操作方法を紹介しています。","ゲノム,可視化,ソフトウェア","http://youtu.be/kHlga3aca0k","http://togotv.dbcls.jp/movie/140529IGV.mov","http://doi.org/10.7875/togotv.2014.027","http://togotv.dbcls.jp/images/20140529_0.jpg","140529IGV.mov","thumbnail/20140529_0.jpg","1. アカウントの登録とIGVのダウンロード・導入 (0分25秒)","2. ゲノム配列のロード (1分25秒)","3. 見たい染色体・座標の選択 (2分38秒)","4. アノテーションの追加 (3分30秒)","5. 塩基配列やアノテーションの表示変更 (4分55秒)","6. 遺伝子名から座標検索 (5分57秒)","7. 選択部分の塩基配列の取得 (6分23秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"789","","togotv.2014.026","","20140413","CRISPRdirect: designing CRISPR/Cas guide RNA sequence","CRISPRdirectefficiently designs guide RNA (gRNA) against any input DNA sequence. CRISPR/Cas system is a simple genome editing technology that enables to cut genome at any desired location. Guide RNA used in this system must flank the PAM sequence and have high specificity to avoid off-target editing. You can also watch YouTube version of this togotv. ","ウェブツール,English,塩基配列,ゲノム,CRISPR","http://youtu.be/OGdBU29v3jY","http://togotv.dbcls.jp/movie/140413crispr_en.mov","http://doi.org/10.7875/togotv.2014.026","http://togotv.dbcls.jp/images/20140413_0.jpg","140413crispr_en.mov","thumbnail/20140413_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"788","","togotv.2014.025","","20140412","CRISPRdirectを使ってCRISPR/Cas法のガイドRNA配列を設計する","CRISPRdirectは、入力した塩基配列に対して効率よくCRISPR/Cas法のガイドRNA(gRNA)を設計することができるWebツールです。CRISPR/Cas法とは、ゲノム上の任意の領域を簡便に切断することができるゲノム編集技術です。CRISPR/Cas法に用いるガイドRNAは、PAMとよばれる配列に隣接し、かつ特異性の高い配列から設計する必要があります。 CRISPRdirectは、Webブラウザ上で実験条件に合った様々なパラメータを考慮しながらオフターゲット作用の小さいガイドRNA設計を行うことができます。","ウェブツール,塩基配列,ゲノム,CRISPR","http://youtu.be/jikEbbKysdo","http://togotv.dbcls.jp/movie/140412crispr_jp.mov","http://doi.org/10.7875/togotv.2014.025","http://togotv.dbcls.jp/images/20140412_0.jpg","140412crispr_jp.mov","thumbnail/20140412_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"787","","togotv.2014.024","","20140407","ウェブで実践する配列比較解析〜相同性検索から分子系統解析まで@AJACS蝦夷3","本日の統合TVは、2013年11月6日に開催された統合データベース講習会:AJACS蝦夷3から、理化学研究所 発生・再生科学総合研究センター ゲノム資源解析ユニット 原 雄一郎 研究員 による「ウェブで実践する配列比較解析〜相同性検索から分子系統解析まで」をお送りします。約90分です。","実習, AJACS","http://youtu.be/KVgB9N7UDWo","http://togotv.dbcls.jp/movie/140407AJACSezo_hara.mov","http://doi.org/10.7875/togotv.2014.024","http://togotv.dbcls.jp/images/20140407_0.jpg","140407AJACSezo_hara.mov","thumbnail/20140407_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"786","","togotv.2014.023","","20140404","Wolfram Alpha を高機能関数電卓として使う その1:基本操作編","Wolfram Alphaは、ウルフラム・リサーチ社が開発した質問応答システムです。ユーザがテキストフィールドに質問や計算リクエスト、キーワードなどを入力すると、構造化されたデータを使って計算、検索し、直接答えを返してくれる新型の検索エンジンです。検索可能な分野は、数学をはじめ、統計とデータ解析、化学、物理、天文学、工学、素材、生物学、計算機科学など多岐にわたっており、さまざまな検索方法や使い方があります。今回は、数学の方程式や曲線の計算とその可視化を例に基本的な使い方を紹介します。","ウェブツール,可視化","http://youtu.be/mvaSjhIxjvo","http://togotv.dbcls.jp/movie/140404wolframalpha1.mov","http://doi.org/10.7875/togotv.2014.023","http://togotv.dbcls.jp/images/20140404_0.jpg","140404wolframalpha1.mov","thumbnail/20140404_0.jpg","1. 今この瞬間に、国際宇宙ステーションがどこにあるのかが分かる (1分57秒)","2. 日本とフランスのGDPを比較する (3分23秒)","3. 塩基配列で検索する (5分54秒)","4. 初音ミクの数式を可視化する (8分00秒)","5. 変数のある多項式を検索する (9分43秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"785","","togotv.2014.022","","20140315","生命科学文献をテキストマイニング","本日の統合TVは、2014年2月24日に開催された、第5回統合牧場収穫祭 から、@tabris2012 による「生命科学文献をテキストマイニング」をお送りします。約18分です。","講演,DBCLS","http://youtu.be/CqQtDmtPziM","http://togotv.dbcls.jp/movie/140315togofarm2014_tabris.mov","http://doi.org/10.7875/togotv.2014.022","http://togotv.dbcls.jp/images/20140315_0.jpg","140315togofarm2014_tabris.mov","thumbnail/20140315_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"784","","togotv.2014.021","","20140314","統合TVを作って見えた世界","本日の統合TVは、2014年2月24日に開催された、第5回統合牧場収穫祭 から、@Go_with_twill による「統合TVを作って見えた世界」をお送りします。約12分です。","講演,DBCLS","http://youtu.be/k1nI2bNUzrc","http://togotv.dbcls.jp/movie/140314togofarm2014_go.mov","http://doi.org/10.7875/togotv.2014.021","http://togotv.dbcls.jp/images/20140314_0.jpg","140314togofarm2014_go.mov","thumbnail/20140314_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"783","","togotv.2014.020","","20140313","統合TV アップロードページの作成","本日の統合TVは、2014年2月24日に開催された、第5回統合牧場収穫祭 から、@Taizo_Ayase による「統合TV アップロードページの作成」をお送りします。約5分です。","講演,DBCLS","http://youtu.be/jnftW4rurCw","http://togotv.dbcls.jp/movie/140313togofarm2014_ayase.mov","http://doi.org/10.7875/togotv.2014.020","http://togotv.dbcls.jp/images/20140313_0.jpg","140313togofarm2014_ayase.mov","thumbnail/20140313_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"782","","togotv.2014.019","","20140312","閑話・バイオデータベースは最高にセクシーな研究分野である","本日の統合TVは、2014年2月24日に開催された、第5回統合牧場収穫祭 から、@iNut による「閑話・バイオデータベースは最高にセクシーな研究分野である」with respect to@sesejunをお送りします。約30分です。","講演,DBCLS","http://youtu.be/_7WF8Wj4r_I","http://togotv.dbcls.jp/movie/140312togofarm2014_iNut.mov","http://doi.org/10.7875/togotv.2014.019","http://togotv.dbcls.jp/images/20140312_0.jpg","140312togofarm2014_iNut.mov","thumbnail/20140312_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"781","","togotv.2014.018","","20140311","THEORETICAL MODELS OF GENE EXPRESSION EVOLUTION","本日の統合TVは、2014年2月24日に開催された、第5回統合牧場収穫祭 から、国立遺伝学研究所 遺伝子発現解析研究室 小笠原 理 助教 による「THEORETICAL MODELS OF GENE EXPRESSION EVOLUTION」をお送りします。約16分です。","講演,DBCLS","http://youtu.be/CStNGUlfCc8","http://togotv.dbcls.jp/movie/140311togofarm2014_ogasawara.mov","http://doi.org/10.7875/togotv.2014.018","http://togotv.dbcls.jp/images/20140311_0.jpg","140311togofarm2014_ogasawara.mov","thumbnail/20140311_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"780","","togotv.2014.017","","20140310","統合牧場とは何だったのか?","本日の統合TVは、2014年2月24日に開催された、第5回統合牧場収穫祭 から、坊農 秀雅 @bonohu による「統合牧場とは何だったのか?」をお送りします。約33分です。","講演,DBCLS","http://youtu.be/15lPEQrx9tU","http://togotv.dbcls.jp/movie/140310togofarm2014_bono.mov","http://doi.org/10.7875/togotv.2014.017","http://togotv.dbcls.jp/images/20140310_0.jpg","140310togofarm2014_bono.mov","thumbnail/20140310_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"779","","togotv.2014.016","","20140307","タンパク質立体構造データベースと分子構造表示ソフトの使い方@AJACS肥後","本日の統合TVは、2014年1月22、23日に開催された統合データベース講習会:AJACS肥後から、大阪大学 蛋白質研究所 川端 猛 特任研究員(客員准教授) による「タンパク質立体構造データベースと分子構造表示ソフトの使い方」をお送りします。約93分です。","実習, AJACS,タンパク質,構造解析","http://youtu.be/5wtfMRl-zxA","http://togotv.dbcls.jp/movie/140307AJACShigo_kawabata.mov","http://doi.org/10.7875/togotv.2014.016","http://togotv.dbcls.jp/images/20140307_0.jpg","140307AJACShigo_kawabata.mov","thumbnail/20140307_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"778","","togotv.2014.015","","20140305","Collecting amino acid sequences and building a phylogenetic tree on the
aLeaves and MAFFT servers.","aLeaves provides a gateway for molecular phylogenetic analysis and is run by the Genome Resource and Analysis Unit, CDB, RIKEN. It accepts an amino acid sequence and collects its homologs from the databases that cover diverse metazoan organisms. The databases are categorized according to organisms and can be chosen by users on demand. The resulting dataset is transferred to the MAFFT multiple sequence alignment server, provided by CBRC, AIST. This server enables an interactive work flow for phylogenetic analysis (sequence selection, alignment and tree construction). It should be noted that this service supports only the NJ and UPGMA methods, which require low computational costs. For more rigorous tree inference, users are recommended to download the multiple sequence alignment from this service and perform the analyses with more elaborate methods, such as ML, locally or on other services.","English,配列解析,タンパク質,アミノ酸,可視化,遺伝子,ウェブツール","http://youtu.be/0hpp-IqhpyQ","http://togotv.dbcls.jp/movie/140305aLeaves_en.mov","http://doi.org/10.7875/togotv.2014.015","http://togotv.dbcls.jp/images/20140305_0.jpg","140305aLeaves_en.mov","thumbnail/20140305_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"777","","togotv.2014.014","","20140302","ChEMBLを使って医薬品候補となる化合物について調べる","ChEMBLdbは、創薬研究に有用な医薬品化合物の情報を提供するデータベースです。現在、約50万個の化合物情報、約190万件の活性情報及びそれらのターゲット情報が登録されています。ユーザーは、生物活性化合物の情報を部分構造検索や類似性検索で調査したり、また、ターゲットのアミノ酸配列からBLAST検索でアッセイ情報を収集することができます。今回は、タンパク質を名前/系統樹/BLAST配列から指定しリガンドを探すTarget Search機能と、化合物の構造を投げ、類似性から探す/名前から探す/SMILE・IDから探すCompound Searchを中心に説明します。","化合物,タンパク質,構造解析,データベース,情報収集","http://youtu.be/E2Zm5M3lEy0","http://togotv.dbcls.jp/movie/140302chembl.mov","http://doi.org/10.7875/togotv.2014.014","http://togotv.dbcls.jp/images/20140302_0.jpg","140302chembl.mov","thumbnail/20140302_0.jpg","1. 標的のタンパク質などの名前を入力し、""Target"" で検索する (0分38秒)","2. Compound Report Card (1分52秒)","3. FASTA 配列から目的タンパク質を指定しリガンドとなる化合物を探す (2分38秒)","4. 目的化合物の名称から検索 (3分27秒)","5. 医薬品情報を確認する (3分52秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"776","","togotv.2014.013","","20140301","Arabidopsis eFP Browser でシロイヌナズナの遺伝子発現情報を見る","Arabidopsis eFP Browserは、シロイヌナズナの遺伝子発現情報を、特定の部位やステージ、ストレス下において色分けしながら見ることができるツールです。自分の知りたい遺伝子について、その発現の絶対量、部位ごとの相対量、他の1遺伝子(ハウスキーピング遺伝子など、任意の遺伝子)との相対量を見ることができます。今回は種子から成熟するまでの様々なステージをまとめたデータソースを例に基本的な扱い方に絞って紹介しています","発現解析,遺伝子,可視化,ウェブツール","http://youtu.be/-ZkA3nyPQYM","http://togotv.dbcls.jp/movie/140301AteFP.mov","http://doi.org/10.7875/togotv.2014.013","http://togotv.dbcls.jp/images/20140301_0.jpg","140301AteFP.mov","thumbnail/20140301_0.jpg","1. Modeの選択(Absolute)やGeneIDの入力 (0分44秒)","2. データの出自などの見方 (1分33秒)","3. Modeの選択(Relative, Compare) (3分27秒)","4. Data Sourceの変更 (5分25秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"775","","togotv.2014.012","","20140228","aLeavesとMAFFTを使ってアミノ酸配列収集と系統樹推定を行う","aLeavesは、 理化学研究所 発生・再生科学総合研究センター ゲノム資源解析ユニットが提供する、分子系統解析のためのツールです。ある1つのアミノ酸配列を用意するだけで、BLAST検索によって、必要な生物種のアミノ酸配列データベースから類似タンパク質を収集できます。配列は産総研CBRCの提供するMAFFT配列アラインメントサーバに送られ、配列のクラスタリング→取捨選択→アラインメント→系統樹推定→取捨選択→アラインメント...という分子系統解析の一連の作業を簡単に行うことができます。 なお、ここで用意されている系統樹推定法は比較的簡易なNJ法とUPGMAであり、ML法によるより厳密な系統樹解析は、配列ファイルをダウンロードして手元の計算機か他のサービスで行う必要があります。","配列解析,タンパク質,アミノ酸,可視化,遺伝子,ウェブツール,系統樹,アラインメント","http://youtu.be/N9qPLRhHfIQ","http://togotv.dbcls.jp/movie/140228aLeaves.mov","http://doi.org/10.7875/togotv.2014.012","http://togotv.dbcls.jp/images/20140228_0.jpg","140228aLeaves.mov","thumbnail/20140228_0.jpg","1. aLeaves: BLASTによるmultifastaの取得 (0分28秒)","2. aLeaves: 取得したデータの見方とMAFFTへの移行 (2分34秒)","3. MAFFT: 配列の取捨選択 (3分41秒)","4. MAFFT: 選択した配列のアラインメント (5分43秒)","5. MAFFT: アラインメントをもとにした系統樹推定 (6分18秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"774","","togotv.2014.011","","20140227","KNApSAcK Familyで代謝物と薬用植物・食材を調べる","KNApSAcK Familyはメタボロミクス研究で重要な代謝物と生物種の関係や二次代謝物の代謝経路、種々な生物(植物)の利用法など多岐にわたる機能を持ったデータベースシステムです。 今回は2009年度版のアップデートとして、メタボローム解析のための代謝物データベースの解説と追加された機能である漢方薬や食材の食べ合わせなど植物利用のデータベースを紹介します。","可視化,構造解析,メタボローム,植物","http://youtu.be/dehKAXRieEs","http://togotv.dbcls.jp/movie/140227KNa2.mov","http://doi.org/10.7875/togotv.2014.011","http://togotv.dbcls.jp/images/20140227_0.jpg","140227KNa2.mov","thumbnail/20140227_0.jpg","1. Core Systemについて(46秒)","2. 三次元データベースについて(2分1秒)","3. Search Engineについて(2分30秒)","4. 食用データベースについて(3分50秒)","5. 病気予防データベースについて(4分33秒)","6. 漢方・生薬データベースについて(5分37秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"773","","togotv.2014.010","","20140226","Gmailの使い方(応用編)","Gmailは、Google社が提供する無料のWebメールサービスです。Googleの検索機能を利用したメールのキーワード検索が可能で、必要な情報を素早く探しだすことができます。また、合計 15 GB の保存容量が利用できるので、メールを削除して容量を確保する必要はありません。さらに、ラベルやアーカイブを活用した柔軟な分類機能や迷惑メールフィルタ、チャット機能があり、非常に高機能なことが特徴です。
今回は、応用編として、スターやラベル、フィルタ機能の使い方、Gmailの送信元のアドレスを変更する方法、オフラインGmailの使い方を紹介しています。","環境設定,ウェブツール,メール,情報収集,Google","http://youtu.be/I34GNSn0kZ4","http://togotv.dbcls.jp/movie/140226Gmailadvance.mov","http://doi.org/10.7875/togotv.2014.010","http://togotv.dbcls.jp/images/20140226_0.jpg","140226Gmailadvance.mov","thumbnail/20140226_0.jpg","1. ラベルを利用する。(41秒)","2. スターを利用する。(2分48秒)","3. フィルタを利用する。(3分59秒)","4. Gmailの送信元を別アドレスにする。(5分29秒)","5. オフラインGmailを利用する。(6分40秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"772","","togotv.2014.009","","20140222","RefExの使い方","RefEx(Reference Expression dataset)は、4つの異なる実験手法(EST、GeneChip、CAGE、RNA-seq)によって得られた40種類の正常組織における遺伝子発現データを統合し並列に表現することで、手法間の比較とともに各遺伝子の発現量を直感的に比較することが可能なリファレンス(参照)データセットです。論文を読んでいて見かけた馴染みのない遺伝子がどの組織・臓器で発現しているのか、どんな特徴があるのかを論文の記述ではなく、バイアスの少ない実際の測定データから研究者自身の目で簡単に確認することができます。また、RefExではさまざまな実験における比較対照などに用いられる『組織特異的遺伝子』を測定データから独自に算出し、組織ごとに一覧することができます。さらに、リスト機能を用いて任意で選んだ最大3つの遺伝子について発現データを含む全ての詳細データを並列に比較することができ、遺伝子発現解析などで見出された不詳な遺伝子群の関係性を知るためのツールとしても有用です。","遺伝子,発現解析,DBCLS,CAGE,RNA-seq","http://youtu.be/GC2gLzvF6t0","http://togotv.dbcls.jp/movie/140222RefEx.mov","http://doi.org/10.7875/togotv.2014.009","http://togotv.dbcls.jp/images/20140222_0.jpg","140222RefEx.mov","thumbnail/20140222_0.jpg","1. キーワード検索 (27秒)","2. 検索結果一覧 (49秒)","3. 遺伝子の詳細表示 (1分37秒)","4. 「組織特異的発現遺伝子」の表示 (2分47秒)","5. 検索結果の絞込み (3分37秒)","6. リスト機能 (4分32秒)","7. カテゴリー別検索 (5分50秒)","8. Advanced search (6分55秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"771","","togotv.2014.008","","20140221","RStudioでRを直感的に使おう","Rはフリーでオープンソースの統計解析環境です。Rを使うとデータの操作や計算、可視化を統合して行うことができます。豊富に用意されたサンプルデータや、対話的な解析、網羅的なパッケージアーカイブCRANが特徴です。Windows, MacOSX, Linux とマルチプラットホームで利用可能です。今回はRの統合開発環境であるRStudioを紹介します。","ソフトウェア,R,可視化","http://youtu.be/6b8pFctsBog","http://togotv.dbcls.jp/movie/140221RStudio.mov","http://doi.org/10.7875/togotv.2014.008","http://togotv.dbcls.jp/images/20140221_0.jpg","140221RStudio.mov","thumbnail/20140221_0.jpg","1. RStudioのインストール(26秒)","2. プロジェクトの作成(1分52秒)","3. RStudioの基本的な使い方(3分11秒)","4. パッケージのロード・インストール(7分27秒)","5. コードの作成・実行・保存(9分27秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"770","","togotv.2014.007","","20140214","KEGG MEDICUSの使い方","「KEGG MEDICUS」では、医薬品情報・添付文書・相互作用・医薬品の成分等を検索・閲覧することができます。薬の商品名や一般名から検索できるだけでなく、有効成分名や薬効からの検索にも対応しており、薬の情報を入手するにあたり便利です。
本動画では、①医薬品情報検索②医薬品相互作用チェック③医薬品成分検索④疾患情報検索⑤KEGGお薬手帳の機能について紹介しています。","化合物,疾患情報,KEGG,情報収集","http://youtu.be/YWft9odcQ3s","http://togotv.dbcls.jp/movie/140214KEGGMEDICUS.mov","http://doi.org/10.7875/togotv.2014.007","http://togotv.dbcls.jp/images/20140214_0.jpg","140214KEGGMEDICUS.mov","thumbnail/20140214_0.jpg","1. 医薬品情報検索の使い方(0分18秒)","2. 医薬品相互作用チェックの使い方(2分38秒)","3. 医薬品成分検索の使い方(4分19秒)","4. 疾患情報検索の使い方(4分59秒)","5. KEGGお薬手帳の使い方(5分51秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"769","","togotv.2014.006","","20140210","Gmailの使い方(基本編)","Gmailは、Google社が提供する無料のWebメールサービスです。Googleの検索機能を利用したメールのキーワード検索が可能で、必要な情報を素早く探しだすことができます。また、合計 15 GB の保存容量が利用できるので、メールを削除して容量を確保する必要はありません。さらに、ラベルやアーカイブを活用した柔軟な分類機能や迷惑メールフィルタ、チャット機能があり、非常に高機能なことが特徴です。今回は、Gmailを使ったメールの送受信や検索といった基本的な使い方を中心に、ちょっとした小技やチャット機能、Todoリストとしての活用法についても紹介します。","環境設定,ウェブツール,メール,情報収集,Google","http://youtu.be/3C4io0LRxLE","http://togotv.dbcls.jp/movie/140210Gmailbasicver4.mov","http://doi.org/10.7875/togotv.2014.006","http://togotv.dbcls.jp/images/20140210_0.jpg","140210Gmailbasicver4.mov","thumbnail/20140210_0.jpg","1. 新しいメールを作成する。(51秒)","2. 受信したメールを確認する。(2分17秒)","3. 迷惑メール設定をする。(2分42秒)","4. メールを検索する。(3分20秒)","5. メールをアーカイブする。(5分8秒)","6. チャットを利用する。(5分58秒)","7. ToDoリストを利用する。(6分47秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"768","","togotv.2014.005","","20140208","次世代シーケンサを活用した研究事例と、それを支える公共ツール・データベース その2@AJACS肥後","本日の統合TVは、2014年1月22、23日に開催された統合データベース講習会:AJACS肥後から、ライフサイエンス統合データベースセンター 大田 達郎 による「次世代シーケンサを活用した研究事例と、それを支える公共ツール・データベース その2」をお送りします。約101分です。","講演, AJACS,NGS,データベース,ウェブツール","http://youtu.be/YBKY0brTOek","http://togotv.dbcls.jp/movie/140208AJACShigo_ohta2.mov","http://doi.org/10.7875/togotv.2014.005","http://togotv.dbcls.jp/images/20140208_0.jpg","140208AJACShigo_ohta2.mov","thumbnail/20140208_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"767","","togotv.2014.004","","20140207","次世代シーケンサを活用した研究事例と、それを支える公共ツール・データベース その1@AJACS肥後","本日の統合TVは、2014年1月22、23日に開催された統合データベース講習会:AJACS肥後から、ライフサイエンス統合データベースセンター 大田 達郎 による「次世代シーケンサを活用した研究事例と、それを支える公共ツール・データベース その1」をお送りします。約69分です。","講演, AJACS,NGS,データベース,ウェブツール","http://youtu.be/iPmTBq0a6_M","http://togotv.dbcls.jp/movie/140207AJACShigo_ohta1.mov","http://doi.org/10.7875/togotv.2014.004","http://togotv.dbcls.jp/images/20140207_0.jpg","140207AJACShigo_ohta1.mov","thumbnail/20140207_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"766","","togotv.2014.003","","20140206","ゲノム情報を閲覧・取得し、活用する@AJACS肥後","本日の統合TVは、2014年1月22、23日に開催された統合データベース講習会:AJACS肥後から、ライフサイエンス統合データベースセンター 坊農 秀雅 による「ゲノム情報を閲覧・取得し、活用する」をお送りします。約87分です。","実習, AJACS,データベース,ゲノム","http://youtu.be/xPO1VL0AzsY","http://togotv.dbcls.jp/movie/140206AJACShigo_bono.mov","http://doi.org/10.7875/togotv.2014.003","http://togotv.dbcls.jp/images/20140206_0.jpg","140206AJACShigo_bono.mov","thumbnail/20140206_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"765","","togotv.2014.002","","20140122","PDBのJmolを利用してタンパク質の立体構造を調べる~応用編~","PDB(Protein Data BankはRCSBが公開しているタンパク質構造データベースです。PDBにはJmolという分子構造ビューワーが埋め込まれており、簡単なブラウザ上での操作によって、立体構造を調べたり画像ファイルを出力したりすることができます。基本編ではマウス操作で使える機能に絞って解説しましたが、今回はコマンドを用いてより詳細に表示を指定する方法について解説します。タンパク質の検索方法など、PDB自体の使い方については、RCSB PDBを使ってタンパク質の立体構造を調べる 2011をご覧ください。","タンパク質,可視化,構造解析,データベース,PDB","http://youtu.be/rFKO0q8VOl4","http://togotv.dbcls.jp/movie/140117AJACSezo_nishikata.mov","http://doi.org/10.7875/togotv.2014.002","http://togotv.dbcls.jp/images/20140115_0.jpg","140117AJACSezo_nishikata.mov","thumbnail/20140115_0.jpg","1. タンパク質の表示モデルを指定する(0分32秒)","2. タンパク質の配色を指定する(2分45秒)","3. 注目したい部位のみを表示する(4分25秒)","4. タンパク質の切断面を表示する(6分4秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"764","","togotv.2014.001","","20140117","既存データベースを活用したタンパク質実験・構造データの探し方@AJACS蝦夷3","本日の統合TVは、2013年11月6日に開催された統合データベース講習会:AJACS蝦夷3から、理化学研究所 情報基盤センター 統合データベース特別ユニット 西方 公郎 氏による「既存データベースを活用したタンパク質実験・構造データの探し方」をお送りします。約56分です。","実習, AJACS,データベース,タンパク質,構造解析,情報収集","http://youtu.be/mWvYMTCk6zk","http://togotv.dbcls.jp/movie/140115_jmol2.mov","http://doi.org/10.7875/togotv.2014.001","http://togotv.dbcls.jp/images/20140117_0.jpg","140115_jmol2.mov","thumbnail/20140117_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"763","","togotv.2013.101","","20131229","DDBJパイプラインによる高速シーケンスデータ解析@AJACS駿河","本日の統合TVは、2013年1月12、13日に開催された統合データベース講習会:AJACS駿河から、国立遺伝学研究所 中村 保一 教授による「DDBJパイプラインによる高速シーケンスデータ解析」をお送りします。約54分です。","実習, AJACS,DDBJ,パイプライン,NGS","http://youtu.be/0_MGS95zTgY","http://togotv.dbcls.jp/movie/131229AJACSsuruga_nakamura.mov","http://doi.org/10.7875/togotv.2013.101","http://togotv.dbcls.jp/images/20131229_0.jpg","131229AJACSsuruga_nakamura.mov","thumbnail/20131229_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"762","","togotv.2013.100","","20131228","主要なDB (DDBJ、PDBj、KEGG)の使い方@AJACS駿河","本日の統合TVは、2013年1月12、13日に開催された統合データベース講習会:AJACS駿河から、国立遺伝学研究所 中村 保一 教授による「主要なDB (DDBJ、PDBj、KEGG)の使い方」をお送りします。約68分です。","実習, AJACS,データベース,DDBJ,PDBj,KEGG","http://youtu.be/oBffc1RNNhA","http://togotv.dbcls.jp/movie/131228AJACSsuruga_nakamura.mov","http://doi.org/10.7875/togotv.2013.100","http://togotv.dbcls.jp/images/20131228_0.jpg","131228AJACSsuruga_nakamura.mov","thumbnail/20131228_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"761","","togotv.2013.099","","20131218","GeneStudioを使って塩基配列をアセンブルする","GeneStudioは、主にサンガーシークエンスによって得られた波形データを、塩基配列情報に変換したり、アセンブルしたりすることができるフリーウェアです。今回は複数の波形データ(ABI)をもとに、それらをアセンブルする方法を紹介します。類似のフリーウェアであるBioEditでも簡単なアセンブルをすることはできますが、GeneStudioではforward/reverse鎖を自動で調節してcontigを生成することができ、また波形データを見ながら手動で各readをトリムすることが可能です。","配列解析,塩基配列,ソフトウェア","http://youtu.be/QI_vdN9ZwUw","http://togotv.dbcls.jp/movie/131218GeneStudio.mov","http://doi.org/10.7875/togotv.2013.099","http://togotv.dbcls.jp/images/20131218_0.jpg","131218GeneStudio.mov","thumbnail/20131218_0.jpg","1. アセンブルを始める (0分56秒)","2. 波形を見つつ端をトリムする (2分31秒)","3. ミスマッチ箇所の検索とコンセンサス配列の編集 (3分48秒)","4. コンセンサス配列の保存 (5分20秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"760","","togotv.2013.098","","20131212","CyanoBaseの使い方 基本編","CyanoBaseはシアノバクテリアの総合的なゲノム情報データベースです。シアノバクテリアのゲノム情報や遺伝子機能を整理して提供しています。CyanoBaseでは研究論文から専門のキュレーターが手動で情報を抽出し、遺伝子ごとの参考文献情報の提供を行っています。今回は基本編として遺伝子のキーワード検索や文献情報など基本的な使い方について説明します。","ゲノム,遺伝子,文献検索,データベース","http://youtu.be/tmIkb5FbCGI","http://togotv.dbcls.jp/movie/131212CyanoBase_basic.mov","http://doi.org/10.7875/togotv.2013.098","http://togotv.dbcls.jp/images/20131212_0.jpg","131212CyanoBase_basic.mov","thumbnail/20131212_0.jpg","1. キーワード検索の解説(56秒)","2. GeneAnnotationの解説(1分40秒)","3. 参考文献のリストについて(2分44秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"759","","togotv.2013.097","","20131209","KNApSAcKファミリーデータベースの利用方法:医食同源、食品からのメタボロミクス!@AJACS駿河","本日の統合TVは、2013年1月12、13日に開催された統合データベース講習会:AJACS駿河から、奈良先端科学技術大学院大学 情報科学研究科 金谷 重彦 教授による「KNApSAcKファミリーデータベースの利用方法:医食同源、食品からのメタボロミクス!」をお送りします。約87分です。","実習, AJACS,データベース,メタボローム","http://youtu.be/--mpYyKq99Q","http://togotv.dbcls.jp/movie/131209AJACSsuruga_kanaya.mov","http://doi.org/10.7875/togotv.2013.097","http://togotv.dbcls.jp/images/20131209_0.jpg","131209AJACSsuruga_kanaya.mov","thumbnail/20131209_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"758","","togotv.2013.096","","20131130","KEGG/GenomeNetの利用法@AJACS蝦夷3","本日の統合TVは、2013年11月6日に開催された統合データベース講習会:AJACS蝦夷3から、京都大学化学研究所 バイオインフォマティクスセンター 守屋 勇樹 研究員による「KEGG/GenomeNetの利用法」をお送りします。約80分です。","実習, AJACS,KEGG","http://youtu.be/Rt9VIt_p13Q","http://togotv.dbcls.jp/movie/131130AJACSezo_moriya.mov","http://doi.org/10.7875/togotv.2013.096","http://togotv.dbcls.jp/images/20131130_0.jpg","131130AJACSezo_moriya.mov","thumbnail/20131130_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"757","","togotv.2013.095","","20131129","Cytoscapeを使って実験データを可視化する","Cytoscapeとは、生物学的ネットワーク(グラフ)を可視化&解析できるオープンソースプラットフォームです。もともとは生物学的ネットワークのためにオブジェクト指向型言語Javaで書かれたソフトですが、もちろん生物以外を対象にすることもできます。手軽な操作でネットワークの画像を出力することができ、また解析をすることもできます。今回は応用発展編として、大量データの読み込みの仕方、フィルターのかけ方、ネットワークの可視化について説明します。","可視化,パスウェイ解析,ソフトウェア","http://youtu.be/dRAHf9p3uP4","http://togotv.dbcls.jp/movie/131129cytoscape2.mov","http://doi.org/10.7875/togotv.2013.095","http://togotv.dbcls.jp/images/20131129_0.jpg","131129cytoscape2.mov","thumbnail/20131129_0.jpg","1. Cytoscape で読み込めるファイル形式の説明 (00分00秒)","2. ネットワークデータ (galFiltered.csv) の内容説明 (00分32秒)","3. ネットワークデータ (galFiltered.csv) の読み込み (1分08秒)","4. マイクロアレイデータ (galExpData.csv) の内容説明 (2分42秒)","5. マイクロアレイデータ (galExpData.csv) の読み込み・レイアウトとスタイルの変更 (3分18秒)","6. 遺伝子発現量の変動の可視化 (5分11秒)","7. 表示領域の移動 (7分43秒)","8. フィルターによるネットワークの選択と抽出 (8分25秒)","9. ノード情報の確認・ネットワーク上の特徴のある部分の抽出 (10分43秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"756","","togotv.2013.094","","20131128","統合TVプロモーションムービー","統合TVは、生命科学分野の有用なデータベースやツールの使い方を動画で紹介するウェブサイトです。数多くの解説動画の情報をうまく整理し、ユーザーが真に必要とする情報に素早く容易にたどりつけるようにまとめています。生命科学研究に頻繁に使われるサイトを知り、その使い倒し術を知る手段として、日々の実験や研究の進展のためぜひご活用ください。","DBCLS,情報収集","http://youtu.be/kNsFe5K8X4I","http://togotv.dbcls.jp/movie/131128togotv_trailer.mov","http://doi.org/10.7875/togotv.2013.094","http://togotv.dbcls.jp/images/20131128_0.jpg","131128togotv_trailer.mov","thumbnail/20131128_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"755","","togotv.2013.093","","20131120","国立国会図書館サーチの使い方","国立国会図書館サーチ (NDL Search)は、国立国会図書館が提供する総合検索サービスで、国立国会図書館をはじめ、全国の公共図書館、公文書館、美術館や学術研究機関等が持つ様々な形態の情報を検索することができます。
今回は、キーワード検索を中心に、検索結果の絞り込みや並び替え、資料の閲覧方法、博士論文の検索・閲覧の仕方など基本的な使い方について説明します。","文献検索,情報収集","http://youtu.be/9gnXzSLUiDw","http://togotv.dbcls.jp/movie/131120NDL.mov","http://doi.org/10.7875/togotv.2013.093","http://togotv.dbcls.jp/images/20131120_0.jpg","131120NDL.mov","thumbnail/20131120_0.jpg","1. キーワード検索の解説(42秒)","2. NDLデジタル化資料へのアクセス(2分20秒)","3. NDL以外のデジタル化資料取得(3分37秒)","4. 館内限定閲覧資料について(4分48秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"754","","togotv.2013.092","","20131119","ゲノムアノテーション 〜真核生物を中心に〜@AJACS琉球","本日の統合TVは、2013年7月31日に開催された統合データベース講習会:AJACS琉球から、新潟大学工学部情報工学科 阿部 貴志 准教授 による「ゲノムアノテーション 〜真核生物を中心に〜」をお送りします。約98分です。","実習, AJACS,ゲノム","http://youtu.be/1Y0OdHEBYK4","http://togotv.dbcls.jp/movie/131119AJACSryukyu_abe.mov","http://doi.org/10.7875/togotv.2013.092","http://togotv.dbcls.jp/images/20131119_0.jpg","131119AJACSryukyu_abe.mov","thumbnail/20131119_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"753","","togotv.2013.091","","20131117","大規模ゲノム疫学研究の統合情報基盤の構築","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、京都大学大学院医学研究科 松田 文彦 教授 による「大規模ゲノム疫学研究の統合情報基盤の構築」をお送りします。約25分です。","講演,トーゴーの日,ゲノム","http://youtu.be/QXk7Ma5Q8Jo","http://togotv.dbcls.jp/movie/131117togo_matsuda.mov","http://doi.org/10.7875/togotv.2013.091","http://togotv.dbcls.jp/images/20131117_0.jpg","131117togo_matsuda.mov","thumbnail/20131117_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"752","","togotv.2013.090","","20131116","生命動態研究をデータベースで駆動する","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、理化学研究所生命システム研究センター発生動態研究チーム 大浪 修一 チームリーダー による「生命動態研究をデータベースで駆動する」をお送りします。約30分です。","講演,トーゴーの日,データベース","http://youtu.be/LFI7H3xJats","http://togotv.dbcls.jp/movie/131116togo_onami.mov","http://doi.org/10.7875/togotv.2013.090","http://togotv.dbcls.jp/images/20131116_0.jpg","131116togo_onami.mov","thumbnail/20131116_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"751","","togotv.2013.089","","20131115","データベース統合の実現に向けて 基盤技術開発(I)","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、ライフサイエンス統合データベースセンター 片山 俊明 特任助教 による「データベース統合の実現に向けて 基盤技術開発(I)」をお送りします。約27分です。","講演,トーゴーの日,DBCLS,RDF","http://youtu.be/LoGtbACL_AM","http://togotv.dbcls.jp/movie/131115togo_katayama.mov","http://doi.org/10.7875/togotv.2013.089","http://togotv.dbcls.jp/images/20131115_0.jpg","131115togo_katayama.mov","thumbnail/20131115_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"750","","togotv.2013.088","","20131114","生命科学におけるビッグデータとHPC","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、横浜市立大学生命医科学研究科 木寺 詔紀 教授 による「生命科学におけるビッグデータとHPC」をお送りします。約40分です。","講演,トーゴーの日","http://youtu.be/r64h6FTLpq0","http://togotv.dbcls.jp/movie/131114togo_kotera.mov","http://doi.org/10.7875/togotv.2013.088","http://togotv.dbcls.jp/images/20131114_0.jpg","131114togo_kotera.mov","thumbnail/20131114_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"749","","togotv.2013.087","","20131113","UCSC Genome Browserの使い方~配列取得編~2013","UCSC Genome Browserは、 米国カリフォルニア大学サンタクルーズ校(UCSC)が開発、維持しているゲノムブラウザ、ゲノムアノテーション閲覧システムです。ゲノムブラウザとはアノテーションが付加された遺伝子のゲノム上の位置やその周辺を表示するツールのことです。今回はUCSC Genome Browser 表示+ENCODE編に続いて興味のある遺伝子を検索し、その遺伝子の詳細情報とその配列の取得方法について詳しく説明しています。","ゲノム,遺伝子,塩基配列,可視化,UCSC,データベース","http://youtu.be/JvrE_YtM8z0","http://togotv.dbcls.jp/movie/131113UCSC.mov","http://doi.org/10.7875/togotv.2013.087","http://togotv.dbcls.jp/images/20131113_0.jpg","131113UCSC.mov","thumbnail/20131113_0.jpg","1. 目的遺伝子の検索と表示(29秒)","2. 配列の表示方法(1分32秒)","3. 表示する配列の詳細設定(2分37秒)","4. NCBIを用いた配列取得(3分39秒)","5. その他の配列取得方法(4分17秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"748","","togotv.2013.086","","20131112","トーゴーの日シンポジウム2013 来賓挨拶","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、総合科学技術会議 原山 優子 議員 による「来賓挨拶」をお送りします。約6分です。","講演,トーゴーの日","http://youtu.be/YQNC-lyCNA8","http://togotv.dbcls.jp/movie/131112togo_harayama.mov","http://doi.org/10.7875/togotv.2013.086","http://togotv.dbcls.jp/images/20131112_0.jpg","131112togo_harayama.mov","thumbnail/20131112_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"747","","togotv.2013.085","","20131111","データベース統合の実現に向けて 基盤技術開発(ll)","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、ライフサイエンス統合データベースセンター 岡本 忍 特任准教授 による「データベース統合の実現に向けて 基盤技術開発(ll)」をお送りします。約24分です。","講演,トーゴーの日,DBCLS,RDF,データベース,ウェブツール","http://youtu.be/ZrvmKPOGzJQ","http://togotv.dbcls.jp/movie/131111togo_okamoto.mov","http://doi.org/10.7875/togotv.2013.085","http://togotv.dbcls.jp/images/20131111_0.jpg","131111togo_okamoto.mov","thumbnail/20131111_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"746","","togotv.2013.084","","20131110","メタボローム・データベース","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、奈良先端科学技術大学院大学 情報科学研究科 金谷 重彦 教授 による「メタボローム・データベース」をお送りします。約31分です。","講演,トーゴーの日,メタボローム","http://youtu.be/ZlCF2Y05Y2E","http://togotv.dbcls.jp/movie/131110togo_kanaya.mov","http://doi.org/10.7875/togotv.2013.084","http://togotv.dbcls.jp/images/20131110_0.jpg","131110togo_kanaya.mov","thumbnail/20131110_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"745","","togotv.2013.083","","20131109","ヒトゲノムバリエーションデータベースの進展","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、東京大学大学院医学系研究科 徳永 勝士 教授 による「ヒトゲノムバリエーションデータベースの進展」をお送りします。約28分です。","講演,トーゴーの日,データベース,多型","http://youtu.be/4DCSbAieTnU","http://togotv.dbcls.jp/movie/131109togo_tokunaga.mov","http://doi.org/10.7875/togotv.2013.083","http://togotv.dbcls.jp/images/20131109_0.jpg","131109togo_tokunaga.mov","thumbnail/20131109_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"744","","togotv.2013.082","","20131108","オーダーメイド医療実現化プロジェクト(第3期)について","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、理化学研究所 統合生命医科学研究センター 久保 充明 副センター長 による「オーダーメイド医療実現化プロジェクト(第3期)について」をお送りします。約30分です。","講演,トーゴーの日","http://youtu.be/Jh1NmSbncvY","http://togotv.dbcls.jp/movie/131108togo_kubo.mov","http://doi.org/10.7875/togotv.2013.082","http://togotv.dbcls.jp/images/20131108_0.jpg","131108togo_kubo.mov","thumbnail/20131108_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"743","","togotv.2013.081","","20131107","アルツハイマー病の超早期治療と臨床・画像データベース","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、東京大学大学院医学系研究科 岩坪 威 教授 による「アルツハイマー病の超早期治療と臨床・画像データベース」をお送りします。約26分です。","講演,トーゴーの日,データベース,画像","http://youtu.be/-N21Tv7muII","http://togotv.dbcls.jp/movie/131107togo_iwatsubo.mov","http://doi.org/10.7875/togotv.2013.081","http://togotv.dbcls.jp/images/20131107_0.jpg","131107togo_iwatsubo.mov","thumbnail/20131107_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"742","","togotv.2013.080","","20131106","植物ゲノム関連データの統合をめざすPlant Genome DataBase Japan","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、かずさDNA研究所 田畑 哲之 所長 による「植物ゲノム関連データの統合をめざすPlant Genome DataBase Japan」をお送りします。約26分です。","講演,トーゴーの日,植物,ゲノム,データベース","http://youtu.be/Q23HQHo0RKA","http://togotv.dbcls.jp/movie/131106togo_tabata.mov","http://doi.org/10.7875/togotv.2013.080","http://togotv.dbcls.jp/images/20131106_0.jpg","131106togo_tabata.mov","thumbnail/20131106_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"741","","togotv.2013.079","","20131105","微生物統合データベース『MicrobeDB.jp』","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、東京工業大学地球生命研究所 黒川 顕 教授 による「微生物統合データベース『MicrobeDB.jp』」をお送りします。約28分です。","講演,トーゴーの日,データベース,微生物","http://youtu.be/qZMPbatcSbM","http://togotv.dbcls.jp/movie/131105togo_kurokawa.mov","http://doi.org/10.7875/togotv.2013.079","http://togotv.dbcls.jp/images/20131105_0.jpg","131105togo_kurokawa.mov","thumbnail/20131105_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"740","","togotv.2013.078","","20131104","自分の健康を守るデータベース","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、京都大学化学研究所 金久 實 特任教授 による「自分の健康を守るデータベース」をお送りします。約28分です。","講演,トーゴーの日","http://youtu.be/FB6btDQTL2I","http://togotv.dbcls.jp/movie/131104togo_kanehisa.mov","http://doi.org/10.7875/togotv.2013.078","http://togotv.dbcls.jp/images/20131104_0.jpg","131104togo_kanehisa.mov","thumbnail/20131104_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"739","","togotv.2013.077","","20131103","糖鎖科学を整理し発信するための標準化と統合化〜その利用の実例を含めて","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、産業技術総合研究所糖鎖医工学研究センター 成松 久 センター長 による「糖鎖科学を整理し発信するための標準化と統合化〜その利用の実例を含めて」をお送りします。約31分です。","講演,トーゴーの日","http://youtu.be/dCpJe716TcA","http://togotv.dbcls.jp/movie/131103togo_narimats.mov","http://doi.org/10.7875/togotv.2013.077","http://togotv.dbcls.jp/images/20131103_0.jpg","131103togo_narimats.mov","thumbnail/20131103_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"738","","togotv.2013.076","","20131102","フェノタイプ情報の高度な活用によるバイオリソースの付加価値創造","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、理化学研究所情報基盤センター統合データベース特別ユニット 豊田 哲郎 ユニットリーダー による「フェノタイプ情報の高度な活用によるバイオリソースの付加価値創造」をお送りします。約26分です。","講演,トーゴーの日","http://youtu.be/pPcrJAMWsO8","http://togotv.dbcls.jp/movie/131102togo_toyoda.mov","http://doi.org/10.7875/togotv.2013.076","http://togotv.dbcls.jp/images/20131102_0.jpg","131102togo_toyoda.mov","thumbnail/20131102_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"737","","togotv.2013.075","","20131101","ライフサイエンスデータベース統合推進事業のオーバービュー","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、科学技術振興機構バイオサイエンスデータベースセンター 副センター長 高木 利久 教授 による「ライフサイエンスデータベース統合推進事業のオーバービュー」をお送りします。約18分です。","講演,トーゴーの日","http://youtu.be/YQCq0dBIXHY","http://togotv.dbcls.jp/movie/131101togo_takagi.mov","http://doi.org/10.7875/togotv.2013.075","http://togotv.dbcls.jp/images/20131101_0.jpg","131101togo_takagi.mov","thumbnail/20131101_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"736","","togotv.2013.074","","20131030","化合物データベースとウェブツールの利用法@AJACS琉球","本日の統合TVは、2013年7月31日に開催された統合データベース講習会:AJACS琉球から、理化学研究所 長田抗生物質研究室 植木 雅史 専任研究員による「化合物データベースとウェブツールの利用法」をお送りします。約90分です。","実習, AJACS,化合物,データベース,ウェブツール","http://youtu.be/oIXVDH472UA","http://togotv.dbcls.jp/movie/131030_AJACSryukyu_ueki.mov","http://doi.org/10.7875/togotv.2013.074","http://togotv.dbcls.jp/images/20131030_0.jpg","131030_AJACSryukyu_ueki.mov","thumbnail/20131030_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"735","","togotv.2013.073","","20131029","GOLD -Genomes Online databaseを使い倒す 2013","GOLDはゲノム塩基配列解読プロジェクトを集めたデータベースです。既に解読が終了したゲノムプロジェクトを始め、現在進行中のゲノムプロジェクトやメタゲノムプロジェクトについて調べることができます。塩基配列や発表された論文、解析を実施している機関などへのリンクもあります。今回は硫黄細菌を例に取りゲノムプロジェクトを検索し、そこから得られる情報を説明します。またメタゲノムプロジェクトやGOLDのその他の機能についても解説します。","ゲノム,遺伝子,塩基配列,データベース,メタゲノム","http://youtu.be/quLYfmeeaZ8","http://togotv.dbcls.jp/movie/131029GOLD.mov","http://doi.org/10.7875/togotv.2013.073","http://togotv.dbcls.jp/images/20131029_0.jpg","131029GOLD.mov","thumbnail/20131029_0.jpg","1.GOLD CARDの説明 (1分13秒)","2.Metagenomesの説明 (4分20秒)","3.Isolate Genomesの説明 (6分04秒)","4.Genome Distributionの説明 (7分12秒)","5.GOLDのその他機能についての解説 (8分20秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"734","","togotv.2013.072","","20131028","PDBjとwwPDBにおける蛋白質構造データ統合化","本日の統合TVは、2013年10月4、5日に開催されたトーゴーの日シンポジウム2013から、大阪大学 蛋白質研究所附属蛋白質解析先端研究センター 、大阪大学 理事補佐 中村 春木 教授 による「PDBjとwwPDBにおける蛋白質構造データ統合化」をお送りします。約28分です。","講演,トーゴーの日,PDBj,PDB","http://youtu.be/QVazjDBB3DQ","http://togotv.dbcls.jp/movie/131028togo_nakamura.mov","http://doi.org/10.7875/togotv.2013.072","http://togotv.dbcls.jp/images/20131028_0.jpg","131028togo_nakamura.mov","thumbnail/20131028_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"733","","togotv.2013.071","","20131025","高速配列検索 GGGenome《ゲゲゲノム》の使い方","GGGenomeは塩基配列を高速に検索することができるツールです。代表的なモデル生物のゲノムまたは転写産物のデータベースを対象に検索できます。 今回の動画では、GGGenome による配列検索の基本的な方法を説明し、さらに応用例として、Google Document のスプレッドシートを利用したプライマー配列情報の整理方法について紹介します。","塩基配列,ゲノム,DBCLS,ウェブツール,Google","http://youtu.be/CyjR8WzR3Q8","http://togotv.dbcls.jp/movie/131025gggenome.mov","http://doi.org/10.7875/togotv.2013.071","http://togotv.dbcls.jp/images/20131025_0.jpg","131025gggenome.mov","thumbnail/20131025_0.jpg","1. 基本的な検索方法(23秒)","2. プライマー配列の整理方法(2分38秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"732","","togotv.2013.070","","20131024","微生物ゲノムアノテーションツールMiGAP@AJACS岐阜","本日の統合TVは、2013年7月12日に開催された統合データベース講習会:AJACS岐阜から、東京工業大学 地球生命研究所 黒川 顕 教授 による「微生物ゲノムアノテーションツールMiGAP」をお送りします。約95分です。","AJACS,講演,微生物","http://youtu.be/TIHKnmhyL6s","http://togotv.dbcls.jp/movie/131024AJACSgifu_kurokawa.mov","http://doi.org/10.7875/togotv.2013.070","http://togotv.dbcls.jp/images/20131024_0.jpg","131024AJACSgifu_kurokawa.mov","thumbnail/20131024_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"731","","togotv.2013.069","","20131018","「Google ドライブ」を使ってオンラインで書類を作成・編集・共有する","「Google ドライブ」はGoogleが提供する、オンラインストレージサービスです。
ブラウザー上で文章・表計算・プレゼンテーションなどのファイル作成や編集・共有を行うことができます。
また、共有しているファイルであれば、共有している人が同時に書き込む事が可能なので、論文等の文章を作成する際にわざわざバージョン管理を行う必要がなくなります。
今回は「Google ドライブ」における
-アカウント作成方法
-ファイルの作成・アップロード方法
-ファイルの共有方法
を紹介します。","ウェブツール,環境設定,文章執筆,Google","http://youtu.be/C8O_STnjWo4","http://togotv.dbcls.jp/movie/131018googledrive.mov","http://doi.org/10.7875/togotv.2013.069","http://togotv.dbcls.jp/images/20131018_0.jpg","131018googledrive.mov","thumbnail/20131018_0.jpg","1. 「Google ドライブ」を利用するためのGoogleアカウントを作成する。(35秒)","2. 「Google ドライブ」で新規ファイルを作成する。(1分43秒)","3. オフラインで作成したファイルを「Google ドライブ」にアップロードする。(3分42秒)","4. 「Google ドライブ」上のファイルを他人と共有・共同編集する。(4分49秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"730","","togotv.2013.068","","20131017","Cytoscapeを使いこなす ~インストール・基本操作編~","Cytoscapeとは、生物学上のパスウェイや分子間相互作用ネットワークを可視化&解析できるフリーソフトです。もともとは生物学的ネットワークのためにオブジェクト指向型言語Javaで書かれたソフトですが、もちろん生物以外を対象にすることもできます。手軽な操作でネットワークの画像を出力することができ、また解析をすることもできます。外部のデータベースから情報を取得したり、ネットワークに関する情報を統合することもできます。今回は、その導入方法と基本的な使い方について説明します。Cytoscapeの使い方の資料としてこちらの講習会で使われたPDFもあります。","パスウェイ解析,可視化,ソフトウェア","http://youtu.be/kfte60OO-60","http://togotv.dbcls.jp/movie/131017cytoscape1.mov","http://doi.org/10.7875/togotv.2013.068","http://togotv.dbcls.jp/images/20131017_0.jpg","131017cytoscape1.mov","thumbnail/20131017_0.jpg","1. Cytoscape のダウンロードとインストール (0分00秒)","2. ノードとエッジの追加・名前変更 (1分20秒)","3. ノードとエッジの設定変更 (3分35秒)","4. ネットワークのスタイル変更 (5分55秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"729","","togotv.2013.067","","20131010","DDBJと新型シーケンサ解析パイプラインの使い方@AJACS富山","本日の統合TVは、2013年8月30日に開催された統合データベース講習会:AJACS富山から、国立遺伝学研究所 大量遺伝情報研究室 中村 保一 教授 による「DDBJと新型シーケンサ解析パイプラインの使い方」をお送りします。約50分です。","実習, AJACS,パイプライン,NGS","http://youtu.be/hblx6UtnRHY","http://togotv.dbcls.jp/movie/131010AJACStoyama_yaskaz.mov","http://doi.org/10.7875/togotv.2013.067","http://togotv.dbcls.jp/images/20131010_0.jpg","131010AJACStoyama_yaskaz.mov","thumbnail/20131010_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"728","","togotv.2013.066","","20131009","次世代シーケンサーを用いたHLA遺伝子の配列決定@AJACS富山","本日の統合TVは、2013年8月30日に開催された統合データベース講習会:AJACS富山から、国立遺伝学研究所 人類遺伝研究部門 細道 一善 助教 による「次世代シーケンサーを用いたHLA遺伝子の配列決定」をお送りします。約50分です。","実習, AJACS,NGS,遺伝子","http://youtu.be/xhOnuc5iYjQ","http://togotv.dbcls.jp/movie/131009AJACStoyama_hosomichi.mov","http://doi.org/10.7875/togotv.2013.066","http://togotv.dbcls.jp/images/20131009_0.jpg","131009AJACStoyama_hosomichi.mov","thumbnail/20131009_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"727","","togotv.2013.065","","20130920","Springer Exemplarの使い方","Springer Exemplarは学術出版社のシュプリンガー(Springer)社が運営する無料の英文論文の著者向けサービスです。 学術論文中の特定の単語やフレーズが、どのような文脈・用法で使用されているのかをシュプリンガーの1900誌以上のジャーナルから検索することができます。 出版年、ジャーナル、国、分野別などで検索フレーズの絞り込みができ、それらのトレンドも知ることができます。分野は医学を始め、ライフサイエンス、工学、数学、ビジネス、法学など多岐にわたり、対象論文は全て査読済みです。 Springer Exemplarは単語や短いフレーズの検索には不向きですが、長いフレーズ、特に5、6ワード以上の検索に真価を発揮します。英語の単語や短いフレーズの検索には、文献中の英語表現を検索するサービスinMeXesが有用です。","文献検索,辞書,ウェブツール,文章執筆","http://youtu.be/YyOnE7TCz5I","http://togotv.dbcls.jp/movie/130920SpringerExemplar.mov","http://doi.org/10.7875/togotv.2013.065","http://togotv.dbcls.jp/images/20130920_0.jpg","130920SpringerExemplar.mov","thumbnail/20130920_0.jpg","1.Springer Exemplarトップページ (9秒)","2.短いフレーズの検索(inMeXes)(1分30秒)","3.長いフレーズの検索(2分20秒)","4.検索結果の見方(2分42秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"726","","togotv.2013.064","","20130914","Perlの使い方 事例編(後編)","Perlはフリーでオープンソースのプログラミング言語です。高いテキスト処理能力を持ち、テキストファイルから特定の情報を抽出したり、テキストの特徴を解析するのに役立ちます。
BioPerlは生命科学分野のデータを解析をする上で便利なPerlのプログラムのライブラリです。BioPerlを使うと、塩基配列やアミノ酸配列の解析、相補鎖の作成、アミノ酸配列への翻訳、GenBankからのデータのダウンロードが容易にできるようになります。
この動画では、PerlやBioPerlを用いた様々なプログラムの例を紹介します。","環境設定,プログラミング,Perl","http://youtu.be/e6UI_6S9bV8","http://togotv.dbcls.jp/movie/130914perl_ex2.mov","http://doi.org/10.7875/togotv.2013.064","http://togotv.dbcls.jp/images/20130914_0.jpg","130914perl_ex2.mov","thumbnail/20130914_0.jpg","1.ファイルから特定のデータだけを抜き出す。(26秒)","2.塩基配列の特徴を解析する。(2分4秒)","3.マニュアルを見る。(5分19秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"725","","togotv.2013.063","","20130913","Perlの使い方 事例編(前編)","Perlはフリーでオープンソースのプログラミング言語です。高いテキスト処理能力を持ち、テキストファイルから特定の情報を抽出したり、テキストの特徴を解析するのに役立ちます。
BioPerlは生命科学分野のデータを解析をする上で便利なPerlのプログラムのライブラリです。BioPerlを使うと、塩基配列やアミノ酸配列の解析、相補鎖の作成、アミノ酸配列への翻訳、GenBankからのデータのダウンロードが容易にできるようになります。
この動画では、PerlやBioPerlを用いた様々なプログラムの例を紹介します。","環境設定,プログラミング,Perl","http://youtu.be/RkV-KjQrKRk","http://togotv.dbcls.jp/movie/130913perl_ex1.mov","http://doi.org/10.7875/togotv.2013.063","http://togotv.dbcls.jp/images/20130913_0.jpg","130913perl_ex1.mov","thumbnail/20130913_0.jpg","1.相補鎖の作成 (26秒)","2.塩基配列の翻訳 (1分46秒)","3.データベース検索 (5分54秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"724","","togotv.2013.062","","20130912","次世代シーケンスデータベースSequenceReadArchiveを利用する@AJACS富山","本日の統合TVは、2013年8月30日に開催された統合データベース講習会:AJACS富山から、ライフサイエンス統合データベースセンター 大田 達郎 による「次世代シーケンスデータベース」をお送りします。約59分です。","実習, AJACS,NGS,データベース","http://youtu.be/O8Z9lLk8kZA","http://togotv.dbcls.jp/movie/130912AJACStoyama_oota.mov","http://doi.org/10.7875/togotv.2013.062","http://togotv.dbcls.jp/images/20130912_0.jpg","130912AJACStoyama_oota.mov","thumbnail/20130912_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"723","","togotv.2013.061","","20130911","データベースの統合はなぜ必要か?@AJACS富山","本日の統合TVは、2013年8月30日に開催された統合データベース講習会:AJACS富山から、東京大学大学院 新領域創成科学研究科 / 科学技術振興機構 バイオサイエンスデータベースセンター 高木 利久 による「データベースの統合はなぜ必要か?」をお送りします。約17分です。","AJACS,講演,データベース","http://youtu.be/fRQuKNM3xJo","http://togotv.dbcls.jp/movie/130911AJACStoyama_takagi.mov","http://doi.org/10.7875/togotv.2013.061","http://togotv.dbcls.jp/images/20130911_0.jpg","130911AJACStoyama_takagi.mov","thumbnail/20130911_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"722","","togotv.2013.060","","20130909","Human Brain Transcriptomeを使ってヒトの脳の発達に関する時空間トランスクリプトームを見る","HBT(Human Brain Transcriptome)は、発達期から成人期まで様々な段階の脳のトランスクリプトームの解析データをまとめたデータベースです。小脳皮質、視床背側神経核、線条体、扁桃体、海馬、大脳新皮質の6つの組織と、大脳新皮質の中でさらに11に分けた領域の発現を見ることができます。Gene Searchでは遺伝子名あるいはデータベースの遺伝子IDからその遺伝子の発現情報を検索したり、ある特定の期間に発現量が有意に変化している遺伝子を検索したりすることができます。Developmental Trajectoriesでは、細胞分裂マーカーの発現を元にして解析した、神経発生や神経伝達についてのデータを見ることができます。Dataから補足のデータや解析に使用したサンプルのデータをダウンロードすることもできます。","遺伝子,可視化,発現解析,データベース","http://youtu.be/OxB_JNL_5is","http://togotv.dbcls.jp/movie/130909HumanBrainTranscriptome.mov","http://doi.org/10.7875/togotv.2013.060","http://togotv.dbcls.jp/images/20130909_0.jpg","130909HumanBrainTranscriptome.mov","thumbnail/20130909_0.jpg","1. 遺伝子名・IDから発現情報の検索 (0分36秒)","2. 発現に有意な差が見られる遺伝子の検索 (3分23秒)","3. 脳神経の発生および機能面の時空間的変化を検索 (5分9秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"721","","togotv.2013.059","","20130903","Technology development of database integration to make sense of big data in
lifescience","In this video,Hidemasa Bono who is Project Associate Professor at Database Center for Lifescience (DBCLS) talks about tackling the problem how to organize big data in lifescience including huge amount of nucleotide sequence data from next generation sequencers and various types of gene expression data. The talk has been at QMB2013.","講演,English,DBCLS","http://youtu.be/mMd1M8bgvgA","http://togotv.dbcls.jp/movie/130903_bono.mov","http://doi.org/10.7875/togotv.2013.059","http://togotv.dbcls.jp/images/20130903_0.jpg","130903_bono.mov","thumbnail/20130903_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"720","","togotv.2013.058","","20130902","NBDCヒトデータ共有ガイドラインとヒトバリエーションデータベースの紹介@AJACS岐阜","本日の統合TVは、2013年7月12日に開催された統合データベース講習会:AJACS岐阜から、バイオサイエンスデータベースセンター 川嶋 実苗 による「NBDCヒトデータ共有ガイドラインとヒトバリエーションデータベースの紹介」をお送りします。約75分です。","AJACS,講演,NBDC,データベース,多型","http://youtu.be/g4KccXtG1ok","http://togotv.dbcls.jp/movie/130902AJACSgifu_kawashima.mov","http://doi.org/10.7875/togotv.2013.058","http://togotv.dbcls.jp/images/20130902_0.jpg","130902AJACSgifu_kawashima.mov","thumbnail/20130902_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"719","","togotv.2013.057","","20130830","Dropboxを利用して資料をオンラインで管理する","Dropboxは写真や文章などの資料を保存・管理できるオンラインストレージサービスです。Dropboxには、資料管理に有用な (1)誤ってファイルを削除・上書きした場合でも前のバージョンを取り出す事ができる。(2)大きいサイズのファイルを他人と共有する。(3)複数のパソコンでデータを自動で同期・共有してくれる。 などの特徴があります。 また、特にバイオ系の研究室での利用法としてはこちらのブログバイオ系の研究室でDropboxを使う利点!も参考にしてください。今回は -Dropboxをインストールする方法 -Dropboxへのファイルのアップロードする方法 -アップロードしたファイルを編集(削除や復元、共有など)する方法を紹介します。"," 環境設定,ウェブツール,文章執筆,ソフトウェア","http://youtu.be/6Azg-yiNJfI","http://togotv.dbcls.jp/movie/130830Dropbox.mov","http://doi.org/10.7875/togotv.2013.057","http://togotv.dbcls.jp/images/20130830_0.jpg","130830Dropbox.mov","thumbnail/20130830_0.jpg","1. Dropboxのアカウントを作成する。(40秒)","2. Dropboxにファイルをアップロードする。(1分24秒)","3. アップロードしたファイルを編集する。(1分52秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"718","","togotv.2013.056","","20130828","difff《デュフフ》を使って文章の変更箇所を調べる","difff《デュフフ》はdiffコマンドを使った比較結果をWeb上に表示するツールです。 テキストボックスに比較したい文章をコピペしてボタンを押すだけで2つの文章でどこが変更されたのか、差分の確認ができます。日本語のテキストも対応しています。 今回はライフサイエンス新着論文レビューに載った統合遺伝子検索GGRNAの記事の校閲前後の文章の比較を例にdifff《デュフフ》の使い方(参考記事『「ライフサイエンス 新着論文レビュー」を支える技術』)を紹介しています。 また、difff《デュフフ》はWord文章はもちろんソースコード、遺伝子リストなどの比較も可能です。","ウェブツール,文章執筆,遺伝子","http://youtu.be/JT2KljhfggQ","http://togotv.dbcls.jp/movie/130828_difff.mov","http://doi.org/10.7875/togotv.2013.056","http://togotv.dbcls.jp/images/20130828_0.jpg","130828_difff.mov","thumbnail/20130828_0.jpg","1. 入力フォームにテキストを貼り付ける(40秒)","2. 比較結果の表示(1分40秒)","3. 作業結果の保存(2分30秒)","4. ソースコードや遺伝子リストの比較(3分05秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"717","","togotv.2013.055","","20130827","遺伝子発現DB・解析ツールの紹介@AJACS琉球","本日の統合TVは、2013年7月31日に開催された統合データベース講習会:AJACS琉球から、ライフサイエンス統合データベースセンター 小野 浩雅による「遺伝子発現DB・解析ツールの紹介」(前半部分)をお送りします。約90分です。","実習, AJACS,発現解析,データベース,ウェブツール","http://youtu.be/FPK-5ByD93Y","http://togotv.dbcls.jp/movie/130827AJACSryukyu_hono.mov","http://doi.org/10.7875/togotv.2013.055","http://togotv.dbcls.jp/images/20130827_0.jpg","130827AJACSryukyu_hono.mov","thumbnail/20130827_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"716","","togotv.2013.054","","20130809","EndNote Webを利用して文献管理をする"," EndNote WebはThomson Reuters社が出している文献管理ツールです。利点としては ・オンラインで無料でできる。 ・5万件までの文献リストを管理できる。 ・2GB分のファイルのストレージを提供してくれる。 欠点としては ・ネット接続が必要である。 ・PDFからの自動ダウンロードやデータ取り込み、投稿スタイルの編集はできない。といった特徴があります。今回は、EndNote Webにおける -アカウント作成方法。 -文献情報の取得、分類方法。 -論文に利用するレファレンス情報の作成方法を紹介します。動画中で紹介している「引用文献のフォーマット」項にみられた問題に関してはこちらのブログEndNote Webの「引用文献のフォーマット」ツールの動作報告に関して。を御覧ください。","文献検索,ウェブツール,文章執筆,情報収集","http://youtu.be/eATWjsIy2Bs","http://togotv.dbcls.jp/movie/130809EndNoteWeb.mov","http://doi.org/10.7875/togotv.2013.054","http://togotv.dbcls.jp/images/20130809_0.jpg","130809EndNoteWeb.mov","thumbnail/20130809_0.jpg","1. EndNote Webのアカウントを作成する。(40秒)","2. 文献情報の取得をする。(1分30秒)","3. 文献情報の分類をする。(2分49秒)","4. 論文に利用するレファレンス情報を作成する。(3分43秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"715","","togotv.2013.053","","20130729","DBCLS Galaxyを使って遺伝子の上流配列に存在する転写因子の予測結合領域を調べる","GalaxyはPenn State University Center for Comparative Genomics and Bioinformaticsで開発されている、ゲノムデータの統合解析ウェブアプリケーションです。DBCLSではこのGalaxyに独自ツールを加えたDBCLS Galaxyを提供しています。今回はDBCLS Galaxyを使って、特定の転写因子予測結合領域と遺伝子上流配列の共通領域をリストアップし、ゲノムブラウザに表示する方法を紹介しています。 まず、Galaxyから UCSC Table Browserにアクセスしてヒトの既知遺伝子(knowngene)の上流200bpをまずリストアップします(データセット1とします)。次に転写因子p53の予測結合領域を同じくUCSC Table Browserからヒトのデータだけに絞って取得します(データセット2)。そして、そのデータセット1と2をGalaxy 中の Tools である'Operate on Genomic Intervals 'の'Intersect the intervals of two queries'を用いてゲノム座標レベルで比較します。それにより、データセット1、2の共通領域がデータセット3として得られます。最後にデータセット3をワンクリックで UCSC Genome Browser にインポートして眺めます。データセット1を作成するときに遺伝子コード領域そのままのゲノム座標ではなく、上流領域のゲノム座標を指定している点がキーポイントです。今回は上流200bpとかなり狭い領域を指定していますがこれは自由に変更出来ます。また、今回例示したp53以外の別の転写因子の予測結合領域をリストアップすることも(UCSC Table Browserから計算結果が提供されていれば)同様の操作により可能です。また重なり具合も自由に設定出来ます。今回はUCSC Genome Browserにデータをインポートしましたが、他にもEnsembl、IGB、RViewerでも同様に見ることができます。","実習,AJACS,Galaxy,パイプライン,DDBJ,ウェブツール","http://youtu.be/Zwk76fojkXs","http://togotv.dbcls.jp/movie/130729galaxy.mov","http://doi.org/10.7875/togotv.2013.053","http://togotv.dbcls.jp/images/20130729_0.jpg","130729galaxy.mov","thumbnail/20130729_0.jpg","1. ヒトゲノム上の既知遺伝子の上流200bpをリストアップする(1分7秒)","2. p53の登録名を調べる(2分6秒)","3. ヒトゲノム上におけるp53の予測結合領域を調べる(3分27秒)","4.2つのデータセットの共通部分を調べる(4分13秒)","5.取得したデータセットをUCSC Genome Browserに表示する(4分52秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"714","","togotv.2013.052","","20130719","文献管理ソフトMendeleyを使って論文を読む・後編","Mendeleyは無料で使える文献管理ツール/SNSです。ファイルのドラッグ&ドロップでタイトル・著者・雑誌名等の情報を抽出してくれる複数のコンピュータやモバイル端末間で同期できる ・ユーザー同士の公開/非公開グループで情報の共有ができるオフィスソフトでの引用や参考文献リストが作成できる など様々な特長があります。 この動画と文献管理ソフトMendeleyを使って論文を読む・前編では、今まで読んできた/新しく読む論文のPDFデータをMendeleyで管理する方法や、Mendeleyの使い方のコツを紹介しています。","文献検索,ソフトウェア,情報収集,文章執筆","http://youtu.be/1wqSlJCL87E","http://togotv.dbcls.jp/movie/130719mendeley_last.mov","http://doi.org/10.7875/togotv.2013.052","http://togotv.dbcls.jp/images/20130719_0.jpg","130719mendeley_last.mov","thumbnail/20130719_0.jpg","1. PDFから取得した文献メタデータの修正 (0分9秒)","2. ライブラリの検索とPDFビュワーの使い方 (1分15秒)","3. Mendeley Webの使い方 (2分49秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"713","","togotv.2013.051","","20130718","文献管理ソフトMendeleyを使って論文を読む・前編","Mendeleyは無料で使える文献管理ツール/SNSです。ファイルのドラッグ&ドロップでタイトル・著者・雑誌名等の情報を抽出してくれる複数のコンピュータやモバイル端末間で同期できる ・ユーザー同士の公開/非公開グループで情報の共有ができるオフィスソフトでの引用や参考文献リストが作成できる など様々な特長があります。 この動画と文献管理ソフトMendeleyを使って論文を読む・後編では、今まで読んできた/新しく読む論文のPDFデータをMendeleyで管理する方法や、Mendeleyの使い方のコツを紹介しています。","文献検索,ソフトウェア,情報収集,文章執筆","http://youtu.be/GymjXPP4w18","http://togotv.dbcls.jp/movie/130718mendeley_firsthalf.mov","http://doi.org/10.7875/togotv.2013.051","http://togotv.dbcls.jp/images/20130718_0.jpg","130718mendeley_firsthalf.mov","thumbnail/20130718_0.jpg","1. Mendeleyアカウントの作成とDesktopアプリのインストール (0分29秒)","2. フォルダ監視を使ったライブラリへの文献追加 (2分10秒)","3. PDFファイルのリネームとサブフォルダへの階層分け (4分28秒)
","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"712","","togotv.2013.050","","20130717","GeneSigDBを使って ある生命現象を特徴づける遺伝子セットを検索・比較する","GeneSigDBはPubMedに登録されている論文の中から、ある生命現象を特徴づける遺伝子セット(gene signatures)を手動で抽出し整理したデータベースです。登録されているデータは、ヒト、マウス、ラットの、主にがん、肺疾患、発生や幹細胞分化の論文を元にしています。 論文名、遺伝子名あるいはEnsembl IDから遺伝子セットを検索することができます。また、これらの遺伝子セットを比較して、重複している遺伝子を探したり、遺伝子セット間の関連度を解析することができます。解析にはフィッシャーの正確確率検定(超幾何分布)を用いています。 ","遺伝子,可視化,発現解析,データベース","http://youtu.be/Py_2iEcqZ0M","http://togotv.dbcls.jp/movie/130717GeneSigDB.mov","http://doi.org/10.7875/togotv.2013.050","http://togotv.dbcls.jp/images/20130717_0.jpg","130717GeneSigDB.mov","thumbnail/20130717_0.jpg","1. 論文名から遺伝子セット(signatures)検索 (0分29秒)","2. 遺伝子セット(signatures)の比較 (2分55秒)","3. 遺伝子名から遺伝子セット・論文検索 (4分55秒)","4. Ensembl IDから遺伝子セット(signatures)の検索 (7分25秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"711","","togotv.2013.049","","20130705","Jalviewを使って配列解析・系統樹作成をする 2013","Jalviewは多重アラインメントのビューワー/エディターです。Javaで作られており、Web上で動作するプラットフォームもあります。今回は、PCにインストールしたJalviewを使用して、多重アラインメントの結果から系統樹を作成し、また多重アライメントされた配列を削除・追加します。Jalviewのインストールは、JalviewのHPから行うことができます。今回使用するTERT.faには、KEGGに収載されているヒト、マウス、ゴリラなどに存在するTERT(テロメラーゼ逆転写酵素)の配列セットが書かれています。また、追加する配列はUniProt ID:A2THE9です。","可視化,配列解析,系統樹,ソフトウェア,ウェブツール,アラインメント","http://youtu.be/cGpnB6KqkHM","http://togotv.dbcls.jp/movie/130705Jalview.mov","http://doi.org/10.7875/togotv.2013.049","http://togotv.dbcls.jp/images/20130705_0.jpg","130705Jalview.mov","thumbnail/20130705_0.jpg","1. CLUSTALWで多重アラインメント (0分21秒)","2. Jalviewのインストール (1分30秒)","3. Jalviewの起動 (2分24秒)","4. 配列を追加して再び系統樹作成 (4分54秒)","5. 系統樹の画像保存 (6分43秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"710","","togotv.2013.048","","20130704","BioDBCore: Current Status and Next Developments","NBDC / DBCLSBioHackathon 2013 was held in Tokyo, Japan. Main focus of this BioHackathon is semantic interoperability and standardization of bioinformatics data and Web services. The participants discussed, explored and developed web applications and interoperability (DDBJ/UniProt, SADI, TogoGenome, Schema.org etc.), generation and standardization of RDF data (Open Bio* tools, SIO, FALDO, Identifiers.org etc.), text-mining, NLP and ontology mapping (LODQA, BioPortal, NanoPublication etc.), quality assessment of SPARQL endpoints (availability, contents, CORS etc.) and standardization of RDF data in specific domains.On the first day of the BioHackathon (Jun. 23), public symposium of the BioHackathon 2013 was held at Tokyo Skytree Space 634. In this talk, Pascale Gaudet makes a presentation entitled ""BioDBCore: Current Status and Next Developments"". (16:30)","講演,English,BioHackathon","http://youtu.be/PPUFeoSo1Ow","http://togotv.dbcls.jp/movie/130704_BH13_Pascale.mov","http://doi.org/10.7875/togotv.2013.048","http://togotv.dbcls.jp/images/20130704_0.jpg","130704_BH13_Pascale.mov","thumbnail/20130704_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"709","","togotv.2013.047","","20130703","Identifiers.org: Practical Integration Tool for Heterogeneous Datasets","NBDC / DBCLSBioHackathon 2013 was held in Tokyo, Japan. Main focus of this BioHackathon is semantic interoperability and standardization of bioinformatics data and Web services. The participants discussed, explored and developed web applications and interoperability (DDBJ/UniProt, SADI, TogoGenome, Schema.org etc.), generation and standardization of RDF data (Open Bio* tools, SIO, FALDO, Identifiers.org etc.), text-mining, NLP and ontology mapping (LODQA, BioPortal, NanoPublication etc.), quality assessment of SPARQL endpoints (availability, contents, CORS etc.) and standardization of RDF data in specific domains.On the first day of the BioHackathon (Jun. 23), public symposium of the BioHackathon 2013 was held at Tokyo Skytree Space 634. In this talk, Nick Juty makes a presentation entitled ""Identifiers.org: Practical Integration Tool for Heterogeneous Datasets"". (13:33)","講演,English,BioHackathon","http://youtu.be/dRLeBq1Hbzg","http://togotv.dbcls.jp/movie/130703_BH13_Nick.mov","http://doi.org/10.7875/togotv.2013.047","http://togotv.dbcls.jp/images/20130703_0.jpg","130703_BH13_Nick.mov","thumbnail/20130703_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"708","","togotv.2013.046","","20130702","Opportunities and Challenges in Nanopublishing","NBDC / DBCLSBioHackathon 2013 was held in Tokyo, Japan. Main focus of this BioHackathon is semantic interoperability and standardization of bioinformatics data and Web services. The participants discussed, explored and developed web applications and interoperability (DDBJ/UniProt, SADI, TogoGenome, Schema.org etc.), generation and standardization of RDF data (Open Bio* tools, SIO, FALDO, Identifiers.org etc.), text-mining, NLP and ontology mapping (LODQA, BioPortal, NanoPublication etc.), quality assessment of SPARQL endpoints (availability, contents, CORS etc.) and standardization of RDF data in specific domains.On the first day of the BioHackathon (Jun. 23), public symposium of the BioHackathon 2013 was held at Tokyo Skytree Space 634. In this talk, Mark Thompson makes a presentation entitled ""Opportunities and Challenges in Nanopublishing"". (18:15)","講演,English,BioHackathon","http://youtu.be/whm6QuT9frI","http://togotv.dbcls.jp/movie/130702_BH13_Mark.mov","http://doi.org/10.7875/togotv.2013.046","http://togotv.dbcls.jp/images/20130702_0.jpg","130702_BH13_Mark.mov","thumbnail/20130702_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"707","","togotv.2013.045","","20130701","The FANTOM5 project: Identifying the complete set of promoters used to
define cellularity","NBDC / DBCLSBioHackathon 2013 was held in Tokyo, Japan. Main focus of this BioHackathon is semantic interoperability and standardization of bioinformatics data and Web services. The participants discussed, explored and developed web applications and interoperability (DDBJ/UniProt, SADI, TogoGenome, Schema.org etc.), generation and standardization of RDF data (Open Bio* tools, SIO, FALDO, Identifiers.org etc.), text-mining, NLP and ontology mapping (LODQA, BioPortal, NanoPublication etc.), quality assessment of SPARQL endpoints (availability, contents, CORS etc.) and standardization of RDF data in specific domains.On the first day of the BioHackathon (Jun. 23), public symposium of the BioHackathon 2013 was held at Tokyo Skytree Space 634. In this talk, Hideya Kawaji makes a presentation entitled ""The FANTOM5 project: Identifying the complete set of promoters used to define cellularity"". (12:52)","講演,English,BioHackathon,FANTOM,CAGE","http://youtu.be/HyZT1rZApWw","http://togotv.dbcls.jp/movie/130701_BH13_kawaji.mov","http://doi.org/10.7875/togotv.2013.045","http://togotv.dbcls.jp/images/20130701_0.jpg","130701_BH13_kawaji.mov","thumbnail/20130701_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"706","","togotv.2013.044","","20130630","Towards Standardization of Annotation RePresentation for Text and Other Web
Resources","NBDC / DBCLSBioHackathon 2013 was held in Tokyo, Japan. Main focus of this BioHackathon is semantic interoperability and standardization of bioinformatics data and Web services. The participants discussed, explored and developed web applications and interoperability (DDBJ/UniProt, SADI, TogoGenome, Schema.org etc.), generation and standardization of RDF data (Open Bio* tools, SIO, FALDO, Identifiers.org etc.), text-mining, NLP and ontology mapping (LODQA, BioPortal, NanoPublication etc.), quality assessment of SPARQL endpoints (availability, contents, CORS etc.) and standardization of RDF data in specific domains.On the first day of the BioHackathon (Jun. 23), public symposium of the BioHackathon 2013 was held at Tokyo Skytree Space 634. In this talk, Karin Verspoor makes a presentation entitled ""Towards Standardization of Annotation Representation for Text and Other Web Resources"". (16:25)","講演,English,BioHackathon","http://youtu.be/23G3Ry4TGtE","http://togotv.dbcls.jp/movie/130630_BH13_Karin.mov","http://doi.org/10.7875/togotv.2013.044","http://togotv.dbcls.jp/images/20130630_0.jpg","130630_BH13_Karin.mov","thumbnail/20130630_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"705","","togotv.2013.043","","20130629","Linking Text Mining Efforts to Semantic Web","NBDC / DBCLSBioHackathon 2013 was held in Tokyo, Japan. Main focus of this BioHackathon is semantic interoperability and standardization of bioinformatics data and Web services. The participants discussed, explored and developed web applications and interoperability (DDBJ/UniProt, SADI, TogoGenome, Schema.org etc.), generation and standardization of RDF data (Open Bio* tools, SIO, FALDO, Identifiers.org etc.), text-mining, NLP and ontology mapping (LODQA, BioPortal, NanoPublication etc.), quality assessment of SPARQL endpoints (availability, contents, CORS etc.) and standardization of RDF data in specific domains.On the first day of the BioHackathon (Jun. 23), public symposium of the BioHackathon 2013 was held at Tokyo Skytree Space 634. In this talk, Jin-Dong Kim makes a presentation entitled ""Linking Text Mining Efforts to Semantic Web"". (13:58)","講演,English,BioHackathon","http://youtu.be/lXFCXKxuCgE","http://togotv.dbcls.jp/movie/130629_BH13_kim.mov","http://doi.org/10.7875/togotv.2013.043","http://togotv.dbcls.jp/images/20130629_0.jpg","130629_BH13_kim.mov","thumbnail/20130629_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"704","","togotv.2013.042","","20130627","Semantic Web Technologies in Proteomics. An EBI overview","NBDC / DBCLSBioHackathon 2013 was held in Tokyo, Japan. Main focus of this BioHackathon is semantic interoperability and standardization of bioinformatics data and Web services. The participants discussed, explored and developed web applications and interoperability (DDBJ/UniProt, SADI, TogoGenome, Schema.org etc.), generation and standardization of RDF data (Open Bio* tools, SIO, FALDO, Identifiers.org etc.), text-mining, NLP and ontology mapping (LODQA, BioPortal, NanoPublication etc.), quality assessment of SPARQL endpoints (availability, contents, CORS etc.) and standardization of RDF data in specific domains.On the first day of the BioHackathon (Jun. 23), public symposium of the BioHackathon 2013 was held at Tokyo Skytree Space 634. In this talk, Antonio Fabregat makes a presentation entitled ""Semantic Web Technologies in Proteomics. An EBI overview"". (14:36)","講演,English,BioHackathon,RDF","http://youtu.be/HYAb3uVEvek","http://togotv.dbcls.jp/movie/130627_BH13_Antonio.mov","http://doi.org/10.7875/togotv.2013.042","http://togotv.dbcls.jp/images/20130627_0.jpg","130627_BH13_Antonio.mov","thumbnail/20130627_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"703","","togotv.2013.041","","20130626","Tripling Bioinformatics Productivity","NBDC / DBCLSBioHackathon 2013 was held in Tokyo, Japan. Main focus of this BioHackathon is semantic interoperability and standardization of bioinformatics data and Web services. The participants discussed, explored and developed web applications and interoperability (DDBJ/UniProt, SADI, TogoGenome, Schema.org etc.), generation and standardization of RDF data (Open Bio* tools, SIO, FALDO, Identifiers.org etc.), text-mining, NLP and ontology mapping (LODQA, BioPortal, NanoPublication etc.), quality assessment of SPARQL endpoints (availability, contents, CORS etc.) and standardization of RDF data in specific domains.On the first day of the BioHackathon (Jun. 23), public symposium of the BioHackathon 2013 was held at Tokyo Skytree Space 634. In this talk, Jerven Bolleman makes a presentation entitled ""Tripling Bioinformatics Productivity"". (25:04)","講演,English,BioHackathon,RDF","http://youtu.be/4mtjUgFiOSg","http://togotv.dbcls.jp/movie/130626_BH13_Jerven.mov","http://doi.org/10.7875/togotv.2013.041","http://togotv.dbcls.jp/images/20130626_0.jpg","130626_BH13_Jerven.mov","thumbnail/20130626_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"702","","togotv.2013.040","","20130625","Integration of Microbial Data Resources with Semantic Web Technologies","NBDC / DBCLSBioHackathon 2013 was held in Tokyo, Japan. Main focus of this BioHackathon is semantic interoperability and standardization of bioinformatics data and Web services. The participants discussed, explored and developed web applications and interoperability (DDBJ/UniProt, SADI, TogoGenome, Schema.org etc.), generation and standardization of RDF data (Open Bio* tools, SIO, FALDO, Identifiers.org etc.), text-mining, NLP and ontology mapping (LODQA, BioPortal, NanoPublication etc.), quality assessment of SPARQL endpoints (availability, contents, CORS etc.) and standardization of RDF data in specific domains.On the first day of the BioHackathon (Jun. 23), public symposium of the BioHackathon 2013 was held at Tokyo Skytree Space 634. In this talk, Shuichi Kawashima makes a presentation entitled ""Integration of Microbial Data Resources with Semantic Web Technologies"". (9:59)","講演,English,BioHackathon,RDF","http://youtu.be/yDCdV7hUjd0","http://togotv.dbcls.jp/movie/130625_BH13_kawashima.mov","http://doi.org/10.7875/togotv.2013.040","http://togotv.dbcls.jp/images/20130625_0.jpg","130625_BH13_kawashima.mov","thumbnail/20130625_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"701","","togotv.2013.039","","20130624","Introduction to the NBDC/DBCLS BioHackathon 2013","NBDC / DBCLSBioHackathon 2013 was held in Tokyo, Japan. Main focus of this BioHackathon is semantic interoperability and standardization of bioinformatics data and Web services. The participants discussed, explored and developed web applications and interoperability (DDBJ/UniProt, SADI, TogoGenome, Schema.org etc.), generation and standardization of RDF data (Open Bio* tools, SIO, FALDO, Identifiers.org etc.), text-mining, NLP and ontology mapping (LODQA, BioPortal, NanoPublication etc.), quality assessment of SPARQL endpoints (availability, contents, CORS etc.) and standardization of RDF data in specific domains.On the first day of the BioHackathon (Jun. 23), public symposium of the BioHackathon 2013 was held at Tokyo Skytree Space 634. In this talk, Toshiaki Katayama makes a presentation entitled ""Introduction to the NBDC/DBCLS BioHackathon 2013"". (8:45)","講演,English,BioHackathon","http://youtu.be/TlMDovKofDY","http://togotv.dbcls.jp/movie/130624_BH13_katayama.mov","http://doi.org/10.7875/togotv.2013.039","http://togotv.dbcls.jp/images/20130624_0.jpg","130624_BH13_katayama.mov","thumbnail/20130624_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"700","","togotv.2013.038","","20130623","Biohackathon 2013 Welcome address","NBDC / DBCLSBioHackathon 2013 was held in Tokyo, Japan. Main focus of this BioHackathon is semantic interoperability and standardization of bioinformatics data and Web services. The participants discussed, explored and developed web applications and interoperability (DDBJ/UniProt, SADI, TogoGenome, Schema.org etc.), generation and standardization of RDF data (Open Bio* tools, SIO, FALDO, Identifiers.org etc.), text-mining, NLP and ontology mapping (LODQA, BioPortal, NanoPublication etc.), quality assessment of SPARQL endpoints (availability, contents, CORS etc.) and standardization of RDF data in specific domains.On the first day of the BioHackathon (Jun. 23), public symposium of the BioHackathon 2013 was held at Tokyo Skytree Space 634. In this talk, Michio Oishi makes a presentation entitled ""Welcome address"". (3:49)","講演,English,BioHackathon","http://youtu.be/AhBwgvR3yz8","http://togotv.dbcls.jp/movie/130623_BH13_Oishi.mov","http://doi.org/10.7875/togotv.2013.038","http://togotv.dbcls.jp/images/20130623_0.jpg","130623_BH13_Oishi.mov","thumbnail/20130623_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"699","","togotv.2013.037","","20130606","PDBのUnreleased Entriesから未発表のタンパク質構造情報を調べる","RCSB PDB(Protein Data Bank)はタンパク質の立体構造データベースです。全てのタンパク質の立体構造は論文発表の前にPDBの発行するPDB IDを割り当てる必要があるため、PDBには""論文としては未発表のタンパク質構造""情報が既に登録されています。今回は、この""論文としては未発表のタンパク質構造""情報を調べる方法を紹介します。","タンパク質,構造解析,PDB,情報収集","http://youtu.be/4emf2V9EUkM","http://togotv.dbcls.jp/movie/130606PDB_Unreleasedentries.mov","http://doi.org/10.7875/togotv.2013.037","http://togotv.dbcls.jp/images/20130606_0.jpg","130606PDB_Unreleasedentries.mov","thumbnail/20130606_0.jpg","1. PDBのトップページに移動する(48秒)","2. Search Unreleased Entriesから論文としては未発表のタンパク質構造情報を探す(1分3秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"698","","togotv.2013.036","","20130605","GeneMANIAを使って遺伝子間ネットワークを検索する","GeneMANIAは遺伝子名を入力すると、それに関係した遺伝子を検索し、ネットワークとして表示してくれるWebアプリケーションです。検索に用いる遺伝子の情報には、タンパク質や遺伝子の相互作用、パスウェイ、共発現、共局在、タンパク質ドメインの相同性などがあります。また、複数の遺伝子名を入力して、それらすべてに関係した遺伝子を検索してネットワーク表示することもできます。GeneMANIAを用いれば、ある生命現象において自分が見逃していた遺伝子や、新たな遺伝子間相互作用を見つけることができるかもしれません。","遺伝子,タンパク質,可視化,発現解析,パスウェイ解析","http://youtu.be/9G8Y8v0LsrY","http://togotv.dbcls.jp/movie/130605GeneMANIA.mov","http://doi.org/10.7875/togotv.2013.036","http://togotv.dbcls.jp/images/20130605_0.jpg","130605GeneMANIA.mov","thumbnail/20130605_0.jpg","1. 遺伝子名の入力から検索 (0分46秒)","2. ネットワーク図の説明 (1分53秒)","3. Genesタブから遺伝子を複数選んでネットワークを再検索 (2分57秒)","4. 条件を絞った表示・検索 (4分30秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"697","","togotv.2013.035","","20130530","Open Refine(旧Google Refine)の使い方 応用編・TogoWS RESTを活用する","Open Refineは、さまざまなデータをきれいに整形したり、欲しい形のものに変換したり、簡単な解析を行ったりすることができるソフトで、表計算ソフトExcelにはないさまざまな機能を持っています。前回「Open Refine(旧Google Refine)の使い方 〜導入・基本編〜」の動画では、Open Refineのダウンロード、およびCSVファイルを用いた文字データと数字データの整形について紹介しました。今回は、Open Refineと、TogoWS RESTというDBCLSの提供するサービスを用いて、大量の遺伝子やタンパク質のIDのリストから、それぞれのIDに関連するアノテーションを一括取得する方法を紹介します。","環境設定,ウェブツール,遺伝子,タンパク質,ソフトウェア,Google","http://youtu.be/wv4sIY6YSPk","http://togotv.dbcls.jp/movie/130530openrefine2.mov","http://doi.org/10.7875/togotv.2013.035","http://togotv.dbcls.jp/images/20130530_0.jpg","130530openrefine2.mov","thumbnail/20130530_0.jpg","1. TogoWS RESTの紹介(18秒)","2. GenBank nucleotide IDのリストから各遺伝子のアノテーションを一括取得する (59秒)","3. 同じIDのリストから各遺伝子の個々のアノテーションを取得する(3分9秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"696","","togotv.2013.034","","20130529","NCBI bookshelfの使い方 2013","NCBIが提供するbookshelfでは医学、生物学に関する教科書を中身を含めて検索・閲覧することができます。検索できるのは残念ながら英語の原著版のみですが、検索した教科書の内容を、パート、チャプター、セクション毎に全文閲覧することができるだけでなく、教科書に掲載されている図表も細かく閲覧することが可能です。また、キーワード検索も対応しており、教科書の中で閲覧したい箇所を容易に見つけることができます。
今回は例として、細胞生物学や分子生物学を中心に生命科学分野の入門書・教科書として名高い”Molecular Biology of the
Cell”(細胞の分子生物学)を検索しています。","文献検索,データベース,NCBI","http://youtu.be/Fo6Wu05Y62c","http://togotv.dbcls.jp/movie/130529bookshelf.mov","http://doi.org/10.7875/togotv.2013.034","http://togotv.dbcls.jp/images/20130529_0.jpg","130529bookshelf.mov","thumbnail/20130529_0.jpg","1. NCBI bookshelfで教科書を検索する(0分52秒)","2. 教科書の目次を確認する(1分12秒)","3. キーワード検索する(1分58秒)","4. 教科書の内容を閲覧する(2分40秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"695","","togotv.2013.033","","20130528","DAVIDの使い方 実践編","DAVIDはマイクロアレイ実験から得られたデータを解析するツールです。このツールを使うことで発現変動のあった遺伝子群の特徴を可視化し、直感的に分析することができます。今回は 「DAVID の使い方 実践編」と題して、DAVID による GO 解析、KEGG パスウェイ解析と、Gene ID Conversion Tool の解説をしています。動画内では、NCBI GEO に登録されているデータ(GSE18121: Gene expression regulation in response to heat stress in different yeast strains)から得た遺伝子リストを用いています。酵母に熱ショックを 30 分間与えた後で発現が上昇した遺伝子約 2000 個を、GEO2R を用いて取得したものです。","遺伝子,発現解析,可視化,ウェブツール,KEGG,パスウェイ解析","http://youtu.be/4f1t1ma9IRc","http://togotv.dbcls.jp/movie/130528david2.mov","http://doi.org/10.7875/togotv.2013.033","http://togotv.dbcls.jp/images/20130528_0.jpg","130528david2.mov","thumbnail/20130528_0.jpg","1. Gene Ontology による解析(1分16秒)","2. KEGG Pathway による解析(3分33秒)","3. Gene ID Conversion Tool(4分3秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"694","","togotv.2013.032","","20130527","ApE(A plasmid Editor)を利用してプラスミドを設計する","ApE(A plasmid Editor)はプラスミドを設計するための無料のDNA配列編集ソフトです。遺伝子配列や制限酵素サイトの検索、2種類の配列のアライメントなどが簡単にできます。 DNA配列編集ソフトにはGenetyxやBioEditなど様々存在しますが、ApEは無料かつWindows/Macいずれでも利用できる利点があります。DNA配列編集ソフトの比較はこちらを御覧ください。今回はApEを利用して以下の内容を紹介します。 ・プラスミド(ベクター)配列を設計する方法 - DNA配列の編集 - DNA配列上の制限酵素サイトの検索 - 設計したプラスミド情報のアウトプット ・アラインメントの方法 なお、動画中で利用しているpET-28a(+)配列はここからダウンロードできます。","遺伝子,塩基配列,ソフトウェア,配列解析,アラインメント","http://youtu.be/GMmjvPRwN-A","http://togotv.dbcls.jp/movie/130527ApE.mov","http://doi.org/10.7875/togotv.2013.032","http://togotv.dbcls.jp/images/20130527_0.jpg","130527ApE.mov","thumbnail/20130527_0.jpg","1. ApEをダウンロードする(32秒)","2. ApEを利用してプラスミド(ベクター)配列を設計する(1分8秒)","3. DNA配列上にある制限酵素サイトを編集する(4分20秒)","4. 設計したプラスミド情報をアウトプットする(5分14秒)","5. 配列をアラインメントする(5分55秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"693","","togotv.2013.031","","20130523","ESTデータベース Entrez Unigeneを使って遺伝子の配列情報を取得する","Unigeneは、NCBIが提供するデータベース統合検索システム Entrez (アントレと読みます: 2013年5月24日現在EntrezはGQueryというサービスに変更されています。) に含まれるデータベースの一つです。Unigeneは遺伝子のESTデータベースであり、様々な遺伝子のEST配列を取得することが出来ます。ESTとは""expressed sequence tag""の略でRNAの一部に当たる短い配列であり、転写産物の“目印”として使われています。また、検索した生物と他の生物種のタンパク質配列を比較することで機能を類推したり、ESTが生物の体のどの部位、発生段階で得られているかなども知ることが出来ます。今回は、マウスのsox2遺伝子を例にしてUnigeneで閲覧できる様々なアノテーション情報を調べ、それらを取得する方法について紹介します。","配列解析,遺伝子,NCBI,データベース","http://youtu.be/yiyLmea32lE","http://togotv.dbcls.jp/movie/130523unigene.mov","http://doi.org/10.7875/togotv.2013.031","http://togotv.dbcls.jp/images/20130523_0.jpg","130523unigene.mov","thumbnail/20130523_0.jpg","1.遺伝子のmRNAとESTを調べる。(0分50秒)","2.体の部位、発生段階ごとのEST発現状況を調べる。(1分51秒)","3.配列を調べる。(3分4秒)","4. 遺伝子のアノテーション情報を保存する。(4分10秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"692","","togotv.2013.030","","20130522","PMC(PubMedCentral)の使い方","PubMedは米国立医学図書館(National Library of Medicine)が維持・管理している文献情報データベースで、2010年4月でおよそ 2,000万件の文献情報を提供しており、検索が月におよそ7,000 万件と生命科学分野で最も利用されているウェブサービスの1つです。その中でPMC(Pubmed Central)は、書誌情報、アブストラクトに加えて全文が無料(フリー、オープンアクセス)で公開されている論文を収録・提供しています。PMCの件数でおよそ 200 万件、雑誌のサイトで全文が提供されているものも含めると300 万件の文献で全文を読むことができます。 今回の統合TVでは、PMCを使った文献検索の基本と知っておくと便利な小技についてご紹介します。","文献検索,データベース,NCBI,情報収集","http://youtu.be/QZ07A7OM8jI","http://togotv.dbcls.jp/movie/130522PMCusage.mov","http://doi.org/10.7875/togotv.2013.030","http://togotv.dbcls.jp/images/20130522_0.jpg","130522PMCusage.mov","thumbnail/20130522_0.jpg","1.PMCで検索する (1分15秒)","2.PMCで論文のAbstract、PDFを読む (2分57秒)","3.PubReaderで論文を読む (3分47秒)","4.将来的に全文が収録される論文を含めて検索する (6分2秒)","5.PubMedに収録されている全論文の数を調べる (7分38秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"691","","togotv.2013.029","","20130514","バイオの買い物.comを使って生命科学製品の比較をする 2013","バイオの買物.comは、ライフサイエンス分野でよく使われる試薬などの製品情報を各メーカーから収集し、研究者が、最も適した製品を簡単に確実に発見できることを目的としたサイトです。「製品を検索する」だけではなく「新しい製品を発見できる」カタログを目指して作られています。検索機能が充実しており、各製品が細かくカテゴリー分けされているのが大きな特徴で、より多くの情報を網羅するために、スポンサー以外のメーカーの製品情報も掲載されています。","情報収集,抗体","http://youtu.be/cccv2WZa4aI","http://togotv.dbcls.jp/movie/130514bionokaimono.mov","http://doi.org/10.7875/togotv.2013.029","http://togotv.dbcls.jp/images/20130514_0.jpg","130514bionokaimono.mov","thumbnail/20130514_0.jpg","1. まとめてカタログ(43秒)","2. 製品をキーワード検索する(2分22秒)","3. 製品の概要を見る(3分06秒)","4. 酵素の価格比較(4分00秒)","5. まとめて抗体検索(6分06秒)","6. その他の提供サービス(8分45秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"690","","togotv.2013.028","","20130502","統合TV、誕生","本日の統合TVは、2013年4月26日に放送された、第壱回不寝ラジオから、坊農 秀雅 による「統合TV、誕生」をお送りします。約53分です。","講演,DBCLS","http://youtu.be/49d5cfxYrjs","http://togotv.dbcls.jp/movie/130502nzradio_bono.mov","http://doi.org/10.7875/togotv.2013.028","http://togotv.dbcls.jp/images/20130502_0.jpg","130502nzradio_bono.mov","thumbnail/20130502_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"689","","togotv.2013.027","","20130430","PANTHERを使ってマイクロアレイデータを機能解析する","PANTHERはマイクロアレイ実験から得られたデータを解析するツールです。このツールを使うことで発現変動のあった遺伝子群の特徴を可視化し、直感的に分析することができます。PANTHERという名前はProtein ANalysis THrough Evolutionary Relationshipsの頭文字に由来しています。ムービーではサンプルデータとして、NCBI GEOに登録されている公共の遺伝子発現データ(GSE1657:Adipocyte Differentiation)を用いて、ヒトの脂肪細胞の分化過程で発現増加した上位500個の遺伝子群のリストを使って説明しています。","遺伝子,発現解析,可視化,転写因子","http://youtu.be/J4ALa5RANWs","http://togotv.dbcls.jp/movie/130430_PANTHER.mov","http://doi.org/10.7875/togotv.2013.027","http://togotv.dbcls.jp/images/20130430_0.jpg","130430_PANTHER.mov","thumbnail/20130430_0.jpg","1. リストのアップロード(40秒)","2. GO Biological Process分析結果(2分44秒)
","3. Bar Chart Gene Count(5分21秒)","4. 転写因子遺伝子(Protein Class)のリストをダウンロード(7分27秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"688","","togotv.2013.026","","20130424","タンパク質配列・構造解析ツールStrapを使い倒す 発展編","Strapは、複数のタンパク質を立体構造や配列を比較しながら整理できる、フリーのJavaアプリケーションです。タンパク質の系統樹の作成や二次構造の予測、また整理した配列を図に変換することもできます。OSはWindows, Macintosh, Linux, Unixに対応しています。今回はStrapの発展的な使い方として、キャッシュを用いない検索、3D画像の重ねあわせ、相同性の可視化、系統樹の作成、ドットプロット、二次構造の予測の方法などを紹介しています。","アミノ酸,タンパク質,構造解析,配列解析,可視化,ソフトウェア,系統樹","http://youtu.be/-D1LOJz4JBg","http://togotv.dbcls.jp/movie/130424Strap2.mov","http://doi.org/10.7875/togotv.2013.026","http://togotv.dbcls.jp/images/20130424_0.jpg","130424Strap2.mov","thumbnail/20130424_0.jpg","1.PDBファイルの関連付け・キャッシュを用いない検索 (0分42秒)","2.3D画像の重ねあわせ (3分17秒)","3.相同性の可視化 (4分50秒)","4.系統樹の作成 (6分30秒)","5.アミノ酸配列/塩基配列の切り替えが可能なドットプロット (7分41秒)","6.アミノ酸配列からの二次構造予測 (8分57秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"687","","togotv.2013.025","","20130409","ImageJの画像処理パッケージFijiを使って画像を三次元的に解析する","ImageJは、NIH(National Institutes of Health)が開発した画像解析フリーウェアです。 これまでにImageJの使いかたを2つ紹介して来ました。「ImageJを利用して画像を処理・解析する」、「ImageJを利用して画像を処理・解析する-2」ところで、ImageJには、特殊化された用途に合わせて開発されたパッケージが多数存在します。今回は、その中から生命科学系の画像処理に適したパッケージFijiの使い方を紹介します。","環境設定,可視化,ソフトウェア,画像","http://youtu.be/sOnXUy4_Eno","http://togotv.dbcls.jp/movie/130409ImageJ-Fiji.mov","http://doi.org/10.7875/togotv.2013.025","http://togotv.dbcls.jp/images/20130409_0.jpg","130409ImageJ-Fiji.mov","thumbnail/20130409_0.jpg","1. Fijiをダウンロードする(37秒)","2. 複数のslice画像の処理をする(1分17秒)","3. stackを3Dで表示する(3分46秒)","4. stackを構成するsliceを立体的に表示する(4分54秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"686","","togotv.2013.024","","20130408","次世代おもろい話@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@iNut改め 統合亭犬太郎 による「次世代おもろい話」をお送りします。約12分です。","講演, AJACS,NGS","http://youtu.be/4N1GJ3cFvxA","http://togotv.dbcls.jp/movie/130408AJACS37_togotei_inutaro.mov","http://doi.org/10.7875/togotv.2013.024","http://togotv.dbcls.jp/images/20130408_0.jpg","130408AJACS37_togotei_inutaro.mov","thumbnail/20130408_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"685","","togotv.2013.023","","20130407","第4回統合牧場収穫祭 飛び入りゲストトーク@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@wakuteka による「第4回統合牧場収穫祭 飛び入りゲストトーク」をお送りします。約5分です。","講演, AJACS","http://youtu.be/rMoWasKDEwQ","http://togotv.dbcls.jp/movie/130407AJACS37_wakuteka.mov","http://doi.org/10.7875/togotv.2013.023","http://togotv.dbcls.jp/images/20130407_0.jpg","130407AJACS37_wakuteka.mov","thumbnail/20130407_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"684","","togotv.2013.022","","20130406","The Origin of Farm@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@dritoshi による「The Origin of Farm」をお送りします。約19分です。","講演, AJACS","http://youtu.be/F4ubD371CxQ","http://togotv.dbcls.jp/movie/130406AJACS37_dritoshi.mov","http://doi.org/10.7875/togotv.2013.022","http://togotv.dbcls.jp/images/20130406_0.jpg","130406AJACS37_dritoshi.mov","thumbnail/20130406_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"683","","togotv.2013.021","","20130405","知のめぐりの良い統合牧場RAのたった一つの心得@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@tabris2012 および@gackelNLによる「新着論文レビューをテキストマイニング3.0: Q」をお送りします。約50分です。","講演, AJACS","http://youtu.be/fSpZ9f5baAk","http://togotv.dbcls.jp/movie/130405AJACS37_bono.mov","http://doi.org/10.7875/togotv.2013.021","http://togotv.dbcls.jp/images/20130405_0.jpg","130405AJACS37_bono.mov","thumbnail/20130405_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"682","","togotv.2013.020","","20130404","Perlと私と牧場と@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@Pankakoski による「Perlと私と牧場と」をお送りします。約6分です。","講演, AJACS,Perl","http://youtu.be/0b3ZDL_8Yqw","http://togotv.dbcls.jp/movie/130404AJACS37_pankako.mov","http://doi.org/10.7875/togotv.2013.020","http://togotv.dbcls.jp/images/20130404_0.jpg","130404AJACS37_pankako.mov","thumbnail/20130404_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"681","","togotv.2013.019","","20130403","新着論文レビューをテキストマイニング3.0: Q@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@tabris2012 および@gackelNLによる「新着論文レビューをテキストマイニング3.0: Q」をお送りします。約50分です。","講演, AJACS","http://youtu.be/VAmMHJE-YXY","http://togotv.dbcls.jp/movie/130403AJACS37_gackel_tabris.mov","http://doi.org/10.7875/togotv.2013.019","http://togotv.dbcls.jp/images/20130403_0.jpg","130403AJACS37_gackel_tabris.mov","thumbnail/20130403_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"680","","togotv.2013.018","","20130402","牧場でのお仕事と研究者のデザイン@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@ono_e による「牧場でのお仕事と研究者のデザイン」をお送りします。約18分です。","講演, AJACS","http://youtu.be/lfgSJa1NTi4","http://togotv.dbcls.jp/movie/130402AJACS37_ono_e.mov","http://doi.org/10.7875/togotv.2013.018","http://togotv.dbcls.jp/images/20130402_0.jpg","130402AJACS37_ono_e.mov","thumbnail/20130402_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"679","","togotv.2013.017","","20130401","Ahne! 研究者を繋げる@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@ahneahneahne による「Ahne! 研究者を繋げる」をお送りします。約13分です。","講演, AJACS","http://youtu.be/PloxOX5RlGo","http://togotv.dbcls.jp/movie/130401AJACS37_ahne.mov","http://doi.org/10.7875/togotv.2013.017","http://togotv.dbcls.jp/images/20130401_0.jpg","130401AJACS37_ahne.mov","thumbnail/20130401_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"678","","togotv.2013.016","","20130331","統合TVの作製をちょっと楽にするはずだった@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@Taizo_Ayase による「統合TVの作製をちょっと楽にするはずだった」をお送りします。約11分です。","講演, AJACS","http://youtu.be/R7yCF6tdwaw","http://togotv.dbcls.jp/movie/130331AJACS37_ayase.mov","http://doi.org/10.7875/togotv.2013.016","http://togotv.dbcls.jp/images/20130331_0.jpg","130331AJACS37_ayase.mov","thumbnail/20130331_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"677","","togotv.2013.015","","20130330","誰もがアクセスできる質の高いコンテンツを作る@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@riv7 による「誰もがアクセスできる質の高いコンテンツを作る」をお送りします。本講演は米国カリフォルニア州からのWeb中継で行われました。約10分です。","講演, AJACS","http://youtu.be/qPyuFdn7IUY","http://togotv.dbcls.jp/movie/130330AJACS37_riv7.mov","http://doi.org/10.7875/togotv.2013.015","http://togotv.dbcls.jp/images/20130330_0.jpg","130330AJACS37_riv7.mov","thumbnail/20130330_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"676","","togotv.2013.014","","20130329","牧場活動記2012@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@E_in_the_field による「牧場活動記2012」をお送りします。約6分です。","講演, AJACS","http://youtu.be/s-iea-QVI5k","http://togotv.dbcls.jp/movie/130329AJACS37_emma.mov","http://doi.org/10.7875/togotv.2013.014","http://togotv.dbcls.jp/images/20130329_0.jpg","130329AJACS37_emma.mov","thumbnail/20130329_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"675","","togotv.2013.013","","20130328","オレの統合TV見て (」・ω・)」うー!@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@poconim による「オレの統合TV見て (」・ω・)」うー!」をお送りします。約7分です。","講演, AJACS","http://youtu.be/w04TE-0qv1Q","http://togotv.dbcls.jp/movie/130328AJACS37_poconim.mov","http://doi.org/10.7875/togotv.2013.013","http://togotv.dbcls.jp/images/20130328_0.jpg","130328AJACS37_poconim.mov","thumbnail/20130328_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"674","","togotv.2013.012","","20130327","ライフサイエンスのラの字くらいしかわからない仔牛が統合牧場のRAになったら@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@TRYalFarm による「ライフサイエンスのラの字くらいしかわからない仔牛が統合牧場のRAになったら」をお送りします。約8分です。","講演, AJACS","http://youtu.be/Gz9FeNzeU5A","http://togotv.dbcls.jp/movie/130327AJACS37_TRYalFarm.mov","http://doi.org/10.7875/togotv.2013.012","http://togotv.dbcls.jp/images/20130327_0.jpg","130327AJACS37_TRYalFarm.mov","thumbnail/20130327_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"673","","togotv.2013.011","","20130326","統合TVつくりません?@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@Go_with_twill による「統合TVつくりません?」をお送りします。約6分です。","講演, AJACS","http://youtu.be/us9lMGGnOHc","http://togotv.dbcls.jp/movie/130326AJACS37_go.mov","http://doi.org/10.7875/togotv.2013.011","http://togotv.dbcls.jp/images/20130326_0.jpg","130326AJACS37_go.mov","thumbnail/20130326_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"672","","togotv.2013.010","","20130325","第4回統合牧場収穫祭 はじめに・統合牧場とは@AJACS本郷13","本日の統合TVは、2013年3月22日に開催された、統合データベース講演会: AJACS本郷13(第4回統合牧場収穫祭)から、@iNut による「第4回統合牧場収穫祭 はじめに・統合牧場とは」をお送りします。約9分です。","講演, AJACS","http://youtu.be/8qbrRkwt9HA","http://togotv.dbcls.jp/movie/130325AJACS37_inut.mov","http://doi.org/10.7875/togotv.2013.010","http://togotv.dbcls.jp/images/20130325_0.jpg","130325AJACS37_inut.mov","thumbnail/20130325_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"671","","togotv.2013.009","","20130324","Perlの使い方 インストール編(Windows)","Perlはフリーでオープンソースのプログラミング言語です。高いテキスト処理能力を持ち、テキストファイルから特定の情報を抽出したり、テキストの特徴を解析するのに役立ちます。
BioPerlは生命科学分野のデータを解析をする上で便利なPerlのプログラムのライブラリです。BioPerlを使うと、塩基配列やアミノ酸配列の解析、相補鎖の作成、アミノ酸配列への翻訳、GenBankからのデータのダウンロードが容易にできるようになります。
今回は、PerlとBioPerlのインストール方法と、プログラムの実行方法を紹介します。","環境設定,プログラミング,Perl","http://youtu.be/cq3wvwEGjWI","http://togotv.dbcls.jp/movie/130324perl_win.mov","http://doi.org/10.7875/togotv.2013.009","http://togotv.dbcls.jp/images/20130324_0.jpg","130324perl_win.mov","thumbnail/20130324_0.jpg","1.Perlの処理系のインストール (53秒)","2.BioPerlのインストール (1分26秒)","3.テキストエディタのインストール (4分55秒)","4.プログラムの実行方法 (7分11秒)","5.PerlやBioPerlの情報の調べ方 (8分47秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"670","","togotv.2013.008","","20130318","蛋白質核酸酵素全文検索を使い倒す 2013","DBCLSが統合ホームページで提供するサービスの一つとして蛋白質核酸酵素全文検索があります。ここでは、生命科学分野の総合レビュー誌で、和文総説誌として唯一PubMedにも掲載されている蛋白質核酸酵素(共立出版)のバックナンバーを全文検索することができます。自分の専門外の分野について概要を知りたいときなどに役立ちます。","DBCLS,文献検索","http://youtu.be/aQ1P5yVAMGw","http://togotv.dbcls.jp/movie/130318PNE.mov","http://doi.org/10.7875/togotv.2013.008","http://togotv.dbcls.jp/images/20130318_0.jpg","130318PNE.mov","thumbnail/20130318_0.jpg","1.PDFの閲覧 (0分40秒)","2.人名、年度での絞り込み (1分05秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"669","","togotv.2013.007","","20130301","抗体検索サイトBioBreaを使い倒す","BioBreaは論文で使用された実績のある抗体を簡単に検索できるサイトです。今回は抗体のキーワードとなる遺伝子名や交差性、免疫動物、実験用途、会社名などの複数の分類項目を組み合わせた検索(ファセット検索)や製品情報比較の方法について紹介します。","遺伝子,タンパク質,データベース,抗体,情報収集","http://youtu.be/DGT_vYBtEUk","http://togotv.dbcls.jp/movie/130301BioBrea.mov","http://doi.org/10.7875/togotv.2013.007","http://togotv.dbcls.jp/images/20130301_0.jpg","130301BioBrea.mov","thumbnail/20130301_0.jpg","1.抗体検索 (0分32秒)","2.ファセット検索 (0分51秒)","3.抗体詳細画面 (1分26秒)","4.引用文献情報 (1分46秒)","5.抗体製品情報の比較 (2分17秒)","6.CiteAb (2分46秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"668","","togotv.2013.006","","20130227","タンパク質配列・構造解析ツールStrapを使い倒す 〜基本編〜","Strapは、複数のタンパク質を立体構造や配列を比較しながら整理できる、フリーのJavaアプリケーションです。タンパク質の系統樹の作成や二次構造の予測、また整理した配列を図に変換することもできます。OSはWindows, Macintosh, Linux, Unixに対応しています。今回はStrapの基礎的な使い方として、アプリケーションのインストール、アミノ酸配列の色分け、タンパク質の3D画像の表示、アミノ酸配列の編集、図への変換、データのインポートとエクスポートの方法などを紹介しています。","アミノ酸,タンパク質,構造解析,配列解析,可視化,ソフトウェア,系統樹","http://youtu.be/g43eyO2Gc1Y","http://togotv.dbcls.jp/movie/130227Strap.mov","http://doi.org/10.7875/togotv.2013.006","http://togotv.dbcls.jp/images/20130227_0.jpg","130227Strap.mov","thumbnail/20130227_0.jpg","1.Strapのインストール (0分28秒)","2.インターフェースの説明 (1分31秒)","3.アミノ酸配列の色分け (2分5秒)","4.タンパク質の3D画像(.PDB)の表示 (3分51秒)","5.タンパク質の立体構造(類似構造)ファイルの検索 (5分51秒)","6.アミノ酸配列のalign、ギャップ挿入 (8分18秒)","7.読み込まれているデータファイルのコピー (9分13秒)","8.アミノ酸配列を元にしたWordファイル、図の作成 (9分46秒)","9.ワードパッド、Webブラウザからドラッグ&ドロップによるデータのインポート(10分17秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"667","","togotv.2013.005","","20130226","PDBのJmolを利用してタンパク質の立体構造を調べる〜基本編〜","PDBはRCSBが公開しているタンパク質構造データベースです。PDBにはJmolという分子構造ビューワーが埋め込まれており、簡単なブラウザ上での操作によって、立体構造を調べたり画像ファイルを出力したりすることができます。今回は、このJmolの使い方を詳しく解説します。","タンパク質,可視化,構造解析,データベース,PDB","http://youtu.be/8GRMqjAWSr4","http://togotv.dbcls.jp/movie/130226_Jmol1.mov","http://doi.org/10.7875/togotv.2013.005","http://togotv.dbcls.jp/images/20130226_0.jpg","130226_Jmol1.mov","thumbnail/20130226_0.jpg","1. タンパク質の立体構造を表示する(38秒)","2. マウス操作でタンパク質を動かす(1分57秒)","3. Display Optionsで表示の設定をする(3分33秒)","4. 画像ファイルを出力する(4分30秒)","5. 特定の鎖だけを表示する(5分28秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"666","","togotv.2013.004","","20130212","Open Refine(旧Google Refine)の使い方 〜導入・基本編〜","Open Refineは、さまざまなデータをきれいに整形したり、欲しい形のものに変換したり、簡単な解析を行ったりすることができるソフトで、表計算ソフトExcelにはないさまざまな機能を持っています。元はGoogleのコンテンツで、Google Refineという名前で知られていましたが、2012年10月にオープンソース化され、Open Refineに改称されました。2012年2月現在、Google RefineからOpen Refineへの過渡期にあり、多くの情報はまだGoogle Refineのままとなっています。 この動画では、Open Refineの導入方法を説明した後、BioMartから取得したCSV形式のヒトの遺伝子の一覧のデータ(一部改変)を用いて、文字データの表記ゆれの統一や、数値データの大小の並び替え、指定した範囲に含まれるデータの抽出、列同士の演算の方法を紹介します。","環境設定,ウェブツール,ソフトウェア,Google","http://youtu.be/ROW-ZNkk3E8","http://togotv.dbcls.jp/movie/130212openrefine.mov","http://doi.org/10.7875/togotv.2013.004","http://togotv.dbcls.jp/images/20130212_0.jpg","130212openrefine.mov","thumbnail/20130212_0.jpg","1. Open Refineの導入方法(41秒)","2. 新規プロジェクト作成(2分1秒)","3. 文字データの整形(3分57秒)","4. 数字データの整形1(並べ替え、範囲を指定して抽出)(7分0秒)","5. 数字データの整形2(列同士の演算)(9分7秒)","6. 操作を行う前の状態に戻す(10分55秒)","7. 整形したデータのダウンロード(11分35秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"665","","togotv.2013.003","","20130208","CiNiiを使って日本語論文を検索する","国立情報学研究所が提供するCiNii(サイニィ)は、日本語の論文や図書・雑誌などの学術情報を検索できるデータベース・サービスです。 国内の学協会が発行する刊行物に掲載された論文と、国内の大学などが刊行する研究紀要、国立国会図書の雑誌記事検索サービスなどを含む膨大な論文情報から目的の論文を検索できます。 また無料で一般公開されている論文も豊富にあり、利用登録なしに無料で検索できます。「CiNii Articles ; 日本の論文をさがす」、「CiNii Books ; 大学図書館の本をさがす」の2つの機能のうち、今回は「CiNii Articles – 日本の論文をさがす」を使い、日本語の論文の検索方法についてご紹介します。","文献検索,データベース,情報収集","http://youtu.be/BS581E8CKOk","http://togotv.dbcls.jp/movie/130208CiNii.mov","http://doi.org/10.7875/togotv.2013.003","http://togotv.dbcls.jp/images/20130208_0.jpg","130208CiNii.mov","thumbnail/20130208_0.jpg","1. 簡易検索と詳細検索(37秒)","2. 検索結果画面(1分30秒)","3. 詳細表示画面(2分13秒)","4. 無料の論文検索(3分34秒)","5. 刊行物ディレクトリ(4分20秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"664","","togotv.2013.002","","20130206","ImageJを利用して画像を処理・解析する-2","ImageJは、NIH(National Institutes of Health)が開発した画像解析フリーウェアです。本ツールを利用して、TIFF・JPEGなど多くの形で保存された画像の編集・解析を行うことができます。 前回「ImageJを利用して画像を処理・解析する」の動画では、ImageJのダウンロード、およびImageJを利用したゲル写真の半定量を行う方法を紹介しました。 今回は、ImageJを利用して、1.複数の画像を重ねあわせる方法、2.細胞数を手動でカウントする方法、3.画像中にスケールバーを挿入する方法、を紹介します。","環境設定,可視化,ソフトウェア,画像","http://youtu.be/aFoJqVAhXWY","http://togotv.dbcls.jp/movie/130206ImageJ-2.mov","http://doi.org/10.7875/togotv.2013.002","http://togotv.dbcls.jp/images/20130206_0.jpg","130206ImageJ-2.mov","thumbnail/20130206_0.jpg","1. 2枚の画像を重ね合わせる(1分15秒)","2. 細胞数を手動でカウントする(2分11秒)","3. 画像中にスケールバーを導入する(3分45秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"663","","togotv.2013.001","","20130131","Web時代における科学出版の現在と将来","本日の統合TVは、2013年1月30日に行われた 横浜市立大学大学院 生命ナノシステム科学研究科生体超分子システム科学専攻 博士後期課程 における講義「科学メディア講究」から ライフサイエンス統合データベースセンター(DBCLS) 飯田 啓介 特任研究員(元 蛋白質 核酸 酵素(PNE)編集長、現 ライフサイエンス新着論文レビュー、ライフサイエンス領域融合レビュー 編集人) による「Web時代における科学出版の現在と将来」をお送りします。約90分の内容です。","DBCLS,講演","http://youtu.be/uhsVssZ8xWc","http://togotv.dbcls.jp/movie/130131_iida_lecture.mov","http://doi.org/10.7875/togotv.2013.001","http://togotv.dbcls.jp/images/20130131_0.jpg","130131_iida_lecture.mov","thumbnail/20130131_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"662","","togotv.2012.097","","20121227","Sigma-AldrichのYour Favorite Geneを使って遺伝子に関連するパスウェイや機能などの様々な情報を調べる2012","Sigma-AldrichのYour Favorite Geneは、遺伝子や疾患、組織、パスウェイなどを検索対象として、そのパスウェイや相互作用ネットワーク、関連文献など様々な情報を調べることができるツールです。今回は「PPAR-γ」と呼ばれる脂肪細胞分化や筋肉でのグルコース取り込みに関係する核内レセプターを例として用いて、Your Favorite Geneの機能について網羅的に解説しています。","遺伝子,パスウェイ解析,可視化,ウェブツール","http://youtu.be/wwIV1ud6JsI","http://togotv.dbcls.jp/movie/121227YourFavoriteGene.mov","http://doi.org/10.7875/togotv.2012.097","http://togotv.dbcls.jp/images/20121227_0.jpg","121227YourFavoriteGene.mov","thumbnail/20121227_0.jpg","1. 自分が調べたい遺伝子の入力 (0分46秒)","2. 相互作用する遺伝子や化合物の表示 (1分51秒)","3. 関連するパスウェイの可視化 (3分34秒)","4. 関連する論文データなどの検索 (4分40秒)","5. 発現量が有意に変化したマイクロアレイのデータセットの検索 (6分30秒)","6. 保存配列、CpGアイランド、メチル化位置の検索 (7分16秒)","7. SNPの検索 (8分17秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"661","","togotv.2012.096","","20121203","第35回日本分子生物学会年会 オンライン抄録集の使い方","第35回日本分子生物学会のIT企画では、学会本来の魅力を引き出すために様々な企画と、それを支えるITシステムを開発しています。こういった取り組みは 「学会年会としては世界初のチャレンジ」ということで、「学会参加者みなさまに積極的に活用していただければ、誰も経験したことがないメチャクチャ面白い年会がきっと実現できます。」という 学会スタッフの方々の想いに賛同し、先だって統合TVでこのITシステムの予告編動画を作成、公開しました。 そしてこの度、2012年12月11日からの年会用のオンライン抄録集が正式公開されたことを受けて、その使い方動画を作成し、公開しました。","DBCLS","http://youtu.be/bLF8j-jGa4Y","http://togotv.dbcls.jp/movie/121203MBSJ_abstract.mov","http://doi.org/10.7875/togotv.2012.096","http://togotv.dbcls.jp/images/20121203_0.jpg","121203MBSJ_abstract.mov","thumbnail/20121203_0.jpg","1.演題や要旨、名前、メールの情報からキーワード検索 (1分44秒)","2.気になる演題にはどんどん、いいね! (2分57秒)","ポスター発表一覧機能があれば広大なポスター会場でももう迷いません (4分9秒)","会期中のスケジュール調整も簡単に (5分2秒)","夜ゼミこそが本当の年会!? (6分5秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"660","","togotv.2012.095","","20121127","Integbioデータベースカタログの使い方","Integbioデータベースカタログは、 文部科学省、厚生労働省、農林水産省、経済産業省の4省による、生命科学系データベースの統合の一環として運営されているライフサイエンス分野の多種多様なデータベースの内容を収録した「カタログ型のデータベース」です。データベースが数多く存在する昨今、データベースをうまく使いこなすことが研究の進展を左右するといっても過言ではありません。しかし実際の利用者からは「必要なデータベースが見つからない」「何のデータベースがあるのか分からない」という声をよく聞きます。Integbioデータベースカタログでは、国内外のデータベースを目的や対象、種類、生物種、提供機関別に分類し、それらの説明が日本語で書かれているのが特徴です。また個々のデータベースについてのレコードが公開されています。","NBDC,データベース","http://youtu.be/dr7tImKcXg4","http://togotv.dbcls.jp/movie/121127integbiodatabase_catalog.mov","http://doi.org/10.7875/togotv.2012.095","http://togotv.dbcls.jp/images/20121127_0.jpg","121127integbiodatabase_catalog.mov","thumbnail/20121127_0.jpg","1. ファセット項目を用いた絞込み(1分36秒)","2. キーワード検索(3分52秒)","3. メニューと新着情報(4分55秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"659","","togotv.2012.094","","20121126","脳疾患画像データベースの医学への応用:アルツハイマー病の治療をめざして","本日の統合TVは、2012年10月5日に開催されたトーゴーの日シンポジウム2012 〜ライフサイエンスデータベース統合の医学への応用を探る〜から、東京大学 大学院医学系研究科 神経病理学分野 岩坪 威 教授による「脳疾患画像データベースの医学への応用:アルツハイマー病の治療をめざして」をお送りします。約21分です。","講演,トーゴーの日,画像","http://youtu.be/_-aGDqvUHJk","http://togotv.dbcls.jp/movie/121126togoiwatsubo.mov","http://doi.org/10.7875/togotv.2012.094","http://togotv.dbcls.jp/images/20121126_0.jpg","121126togoiwatsubo.mov","thumbnail/20121126_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"658","","togotv.2012.093","","20121125","KEGG MEDICUSと参加型医療","本日の統合TVは、2012年10月5日に開催されたトーゴーの日シンポジウム2012 〜ライフサイエンスデータベース統合の医学への応用を探る〜から、京都大学 化学研究所 金久 實 特任教授による「KEGG MEDICUSと参加型医療」をお送りします。約27分です。","講演,トーゴーの日,KEGG","http://youtu.be/x2xDpv9rDes","http://togotv.dbcls.jp/movie/121125togokanehisa.mov","http://doi.org/10.7875/togotv.2012.093","http://togotv.dbcls.jp/images/20121125_0.jpg","121125togokanehisa.mov","thumbnail/20121125_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"657","","togotv.2012.092","","20121124","まずは糖鎖研究に必要な技術開発、そして医療への応用−産総研糖鎖センターのこれまでの挑戦","本日の統合TVは、2012年10月5日に開催されたトーゴーの日シンポジウム2012 〜ライフサイエンスデータベース統合の医学への応用を探る〜から、産総研 糖鎖医工学研究センター 成松 久 センター長による「まずは糖鎖研究に必要な技術開発、そして医療への応用〜産総研糖鎖センターのこれまでの挑戦」をお送りします。約30分です。","講演,トーゴーの日","http://youtu.be/mn6hgQYyFZM","http://togotv.dbcls.jp/movie/121124togonarimatsu.mov","http://doi.org/10.7875/togotv.2012.092","http://togotv.dbcls.jp/images/20121124_0.jpg","121124togonarimatsu.mov","thumbnail/20121124_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"656","","togotv.2012.091","","20121123","KNApSAcKファミリーデータベース:メタボロミクスから展開する植物の多目的活用","本日の統合TVは、2012年10月5日に開催されたトーゴーの日シンポジウム2012 〜ライフサイエンスデータベース統合の医学への応用を探る〜から、奈良先端科学技術大学院大学 情報科学研究科 金谷 重彦 教授による「KNApSAcKファミリーデータベース:メタボロミクスから展開する植物の多目的活用」をお送りします。約23分です。","講演,トーゴーの日,植物,メタボローム","http://youtu.be/8UAZuhlY2vE","http://togotv.dbcls.jp/movie/121123togokanaya.mov","http://doi.org/10.7875/togotv.2012.091","http://togotv.dbcls.jp/images/20121123_0.jpg","121123togokanaya.mov","thumbnail/20121123_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"655","","togotv.2012.090","","20121122","がんゲノムのデータベース化と共有","本日の統合TVは、2012年10月5日に開催されたトーゴーの日シンポジウム2012 〜ライフサイエンスデータベース統合の医学への応用を探る〜から、 国立がん研究センター研究所 がんゲノミクス研究分野 柴田 龍弘 分野長による基調講演「がんゲノムのデータベース化と共有」をお送りします。約36分です。","講演,トーゴーの日,データベース,ゲノム","http://youtu.be/d-6iJY_ERn8","http://togotv.dbcls.jp/movie/121122togoshibata.mov","http://doi.org/10.7875/togotv.2012.090","http://togotv.dbcls.jp/images/20121122_0.jpg","121122togoshibata.mov","thumbnail/20121122_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"654","","togotv.2012.089","","20121119","ImageJを利用して画像を処理・解析する","ImageJは、NIH(National Institutes of Health)が開発した画像解析フリーウェアです。本ツールを利用して、TIFF・JPEGなど多くの形で保存された画像の編集・解析を行うことができます。今回は、ImageJのダウンロード、およびImageJを利用したゲル写真の半定量を行う方法を説明しています。","環境設定,可視化,ソフトウェア,画像","http://youtu.be/2CJe9X-ViwY","http://togotv.dbcls.jp/movie/121119ImageJ.mov","http://doi.org/10.7875/togotv.2012.089","http://togotv.dbcls.jp/images/20121119_0.jpg","121119ImageJ.mov","thumbnail/20121119_0.jpg","1. ImageJをダウンロードする(34秒)","2. ゲル写真を加工する(2分1秒)","3. 各レーンのバンド強度を半定量する(4分30秒)","4. 半定量したバンド強度をグラフに出力する(5分30秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"653","","togotv.2012.088","","20121113","ライフサイエンス領域融合レビューLeadingAuthor'sを使い倒す","「領域融合レビュー」は、生命科学において注目される分野・学問領域における最新の研究成果を、その背景や歴史からわかりやすく紹介・解説する日本語コンテンツです。 「新着論文レビュー」がある1本の論文を解説するものであるのに対し、「領域融合レビュー」はある学問分野・領域を広く総合的に取り上げる比較的長いレビューを出版・公開するものです。","DBCLS,文献検索","http://youtu.be/XhQq9gl0W4c","http://togotv.dbcls.jp/movie/121113leadingauthors.mov","http://doi.org/10.7875/togotv.2012.088","http://togotv.dbcls.jp/images/20121113_0.jpg","121113leadingauthors.mov","thumbnail/20121113_0.jpg","1.レビューの探し方(47秒)","2.レビューの見方(2分24秒)","3.ライセンスについて(4分24秒)","4.レビューの引用について(4分47秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"652","","togotv.2012.087","","20121109","創薬研究のための化合物管理システム","本日の統合TVは、2012年10月12日に開催されたBioJapan2012の主催者セミナー「データベースが変えるバイオテクノロジー戦略〜ライフサイエンス・コモンズを目指して」から、 エーザイ株式会社 長洲 毅志 理事による「創薬研究のための化合物管理システム」をお送りします。約22分です。","講演,データベース,化合物","http://youtu.be/AiIASx536NM","http://togotv.dbcls.jp/movie/121109biojapan_nagasu.mov","http://doi.org/10.7875/togotv.2012.087","http://togotv.dbcls.jp/images/20121109_0.jpg","121109biojapan_nagasu.mov","thumbnail/20121109_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"651","","togotv.2012.086","","20121108","KNApSAcK Family DB: オミックス研究における医食同源の体系化","本日の統合TVは、2012年10月12日に開催されたBioJapan2012の主催者セミナー「データベースが変えるバイオテクノロジー戦略〜ライフサイエンス・コモンズを目指して」から、奈良先端科学技術大学院大学 情報科学研究科 金谷 重彦 教授による「KNApSAcK Family DB: オミックス研究における医食同源の体系化」をお送りします。約18分です。","講演","http://youtu.be/chx4DQxP-qo","http://togotv.dbcls.jp/movie/121108biojapan_kanaya.mov","http://doi.org/10.7875/togotv.2012.086","http://togotv.dbcls.jp/images/20121108_0.jpg","121108biojapan_kanaya.mov","thumbnail/20121108_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"650","","togotv.2012.085","","20121107","ヒトゲノムバリエーションデータベースが変える疾患研究戦略","本日の統合TVは、2012年10月12日に開催されたBioJapan2012の主催者セミナー「データベースが変えるバイオテクノロジー戦略〜ライフサイエンス・コモンズを目指して」から、東京大学 大学院医学系研究科 人類遺伝学教室 徳永 勝士 教授による「ヒトゲノムバリエーションデータベースが変える疾患研究戦略」をお送りします。約24分です。","講演,多型,データベース","http://youtu.be/Htc4wkcqisk","http://togotv.dbcls.jp/movie/121107biojapan_tokunaga.mov","http://doi.org/10.7875/togotv.2012.085","http://togotv.dbcls.jp/images/20121107_0.jpg","121107biojapan_tokunaga.mov","thumbnail/20121107_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"649","","togotv.2012.084","","20121106","データベースが変えるバイオテクノロジー戦略−ライフサイエンス・コモンズを目指して「はじめに:セミナーの趣旨」","本日の統合TVは、2012年10月12日に開催されたBioJapan2012の主催者セミナー「データベースが変えるバイオテクノロジー戦略〜ライフサイエンス・コモンズを目指して」から、東京大学大学院新領域創成科学研究科 教授/科学技術振興機構 バイオサイエンスデータベースセンター 副センター長 高木 利久 による「はじめに:セミナーの趣旨」をお送りします。約8分です。","講演","http://youtu.be/qcw696KeVvU","http://togotv.dbcls.jp/movie/121106biojapan_takagi.mov","http://doi.org/10.7875/togotv.2012.084","http://togotv.dbcls.jp/images/20121106_0.jpg","121106biojapan_takagi.mov","thumbnail/20121106_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"648","","togotv.2012.083","","20121105","MMDBを使ってタンパク質の構造を知る","MMDBはNCBIが提供するデータベースの一つです。MMDBではタンパク質やRNAの立体構造を知ることができます。また、それが複合体を形成していればそれぞれの物質の位置関係などを知ることもできます。MMDBはNCBIの他のデータベースであるPubChem,PubMed, CDDなどと相互連携しています。 今回は、MMDBの使い方として、構造が知りたいタンパク質に関連するページの探し方と、その見方を紹介しています。","タンパク質,構造解析,データベース,NCBI","http://youtu.be/IrWKQqH59t4","http://togotv.dbcls.jp/movie/121105MMDB.mov","http://doi.org/10.7875/togotv.2012.083","http://togotv.dbcls.jp/images/20121105_0.jpg","121105MMDB.mov","thumbnail/20121105_0.jpg","1.NCBI、またはMMDBのページの""Structure""から構造を直接検索 (0分37秒)","2.MMDBのページの見方 (1分19秒)","3.アラインメントを利用した類似構造の検索 (4分27秒)","4.GI numberから直接検索 (8分32秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"647","","togotv.2012.082","","20121102","私が「情報生命」という新しい分野に挑戦しているわけ","本日の統合TVは、2012年9月15日に広尾学園高等学校において開催された、統合データベース高校特別講習から、東京大学大学院新領域創成科学研究科 教授/科学技術振興機構 バイオサイエンスデータベースセンター 副センター長 高木 利久 による「私が「情報生命」という新しい分野に挑戦しているわけ」をお送りします。約55分です。","講演","http://youtu.be/n_kdccJXz-Y","http://togotv.dbcls.jp/movie/121102takagi.mov","http://doi.org/10.7875/togotv.2012.082","http://togotv.dbcls.jp/images/20121102_0.jpg","121102takagi.mov","thumbnail/20121102_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"646","","togotv.2012.081","","20121030","ウイルスの持ち出した宿主の遺伝子配列がコードされている領域をアミノ酸配列レベルでゲノム中から探し当てる 2012","ラウス肉腫ウイルス(Rous sarcoma virus)は、ニワトリで発見された腫瘍形成に関わっている腫瘍ウイルスで、1911年にペイトン・ラウスによって発見されました。2本鎖RNAをゲノムにもつレトロウイルスで、ガンの原因となる遺伝子はsarcomaからsrcと名付けられましたが、実は宿主の細胞にもほとんど同じ遺伝子配列が存在していることが発見されました。ウイルス由来のsrc遺伝子はv-src、細胞由来のものはc-srcと記述されています。 今回はそのv-srcのタンパク質配列を、ラウス肉腫ウイルスのゲノム配列を検索するところから始めて取得し、それをすでに解読されているニワトリのゲノム配列に対してアミノ酸配列のままBLAT検索にかけc-srcがコードされているゲノム上の領域を探し当てます。さらにその2種類のsrcのアラインメントを見ることでsrc遺伝子の遺伝子情報をウイルスがニワトリゲノムから持ち出してから現在に至るまでどこの場所に変異が入ったか、知ることが出来ます。最後に、その場所をUCSC Genome Browserで確認します(なお、UCSC Genome Browserの日本語による解説をkumaさんがここから公開されています)。","アミノ酸,塩基配列,配列解析,ゲノム,UCSC,アラインメント","http://youtu.be/uMwhJQZoyfE","http://togotv.dbcls.jp/movie/121030_Rous_sarcoma_virus.mov","http://doi.org/10.7875/togotv.2012.081","http://togotv.dbcls.jp/images/20121030_0.jpg","121030_Rous_sarcoma_virus.mov","thumbnail/20121030_0.jpg","1. ラウス肉腫ウイルスの遺伝子配列情報の取得(42秒)","2. FASTA 形式での配列情報の取得(2分45秒)","3. UCSC BLAT を用いたアラインメント探索(3分20秒)","4. アラインメント探索結果の表示(3分52秒)","5. ヒットした遺伝子の周辺を UCSC Genome Browser で見る(7分15秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"645","","togotv.2012.080","","20121012","Gendooを利用して遺伝子と疾患の関連を調べる","Gendooは、遺伝子・疾患について、関連する疾患・薬剤・臓器・生命現象などの特徴をキーワードでリスト表示するツールです。本ツールでは遺伝子情報のデータベースであるthe Gene Ontologyと、疾患情報のデータベースであるOMIM - Online Mendelian Inheritance in Manや生命科学用語集のMeSH(Medical Subject Headings)を結びつけています。 これにより、個々のデータベースだけからは分かりにくかった、遺伝子と疾患・生命現象の関連付け、特徴付けを容易に行う事ができるようになりました。 今回はがん遺伝子として有名なTP53とその抑制因子MDM2や、1型糖尿病・2型糖尿病の比較を通してGendooの使い方を説明しています。","遺伝子,疾患情報,データベース","http://youtu.be/AC1gnW3-UTo","http://togotv.dbcls.jp/movie/121012gendoo.mov","http://doi.org/10.7875/togotv.2012.080","http://togotv.dbcls.jp/images/20121012_0.jpg","121012gendoo.mov","thumbnail/20121012_0.jpg","1. 遺伝子・Gene IDを利用して検索する(1分1秒)","2. 得られた結果の解釈方法についての説明(1分29秒)","3. OMIMのID・疾患名を利用して検索する(3分40秒)","4. MeSHに登録されているキーワードを利用して検索する(4分59秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"644","","togotv.2012.079","","20120927","DAVIDを使ってマイクロアレイデータを解析する 2012","DAVIDはマイクロアレイ実験から得られたデータを解析するツールです。このツールを使うことで発現変動のあった遺伝子群の特徴を可視化し、直感的に分析することができます。DAVIDという名前はThe Database for Annotation, Visualization and Integrated Discoveryの頭文字に由来しています。","遺伝子,発現解析,可視化,","http://youtu.be/WIfe7Z_Mvxg","http://togotv.dbcls.jp/movie/120927david1.mov","http://doi.org/10.7875/togotv.2012.079","http://togotv.dbcls.jp/images/20120927_0.jpg","120927david1.mov","thumbnail/20120927_0.jpg","1. リストのアップロード(31秒)","2. Functional Annotation Clustering(2分3秒)","3. Functional Annotation Chart(4分58秒)","4. Functional Annotation Table(5分28秒)","5. Gene Functional Classification(5分53秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"643","","togotv.2012.078","","20120926","R+Bioconductorを使ったNGS解析2@AJACSみちのく2","本日の統合TVは、2012年8月23、24日に開催された、統合データベース講演会: AJACSみちのく2から、理化学研究所 発生・再生科学総合研究センター二階堂 愛 研究員 による「R+Bioconductorを使ったNGS解析2」をお送りします。約1時間20分です。","実習, AJACS,R,Bioconductor,NGS,RNA-seq","http://youtu.be/o68sxiAytlo","http://togotv.dbcls.jp/movie/120926AJACS34nikaido2.mov","http://doi.org/10.7875/togotv.2012.078","http://togotv.dbcls.jp/images/20120926_0.jpg","120926AJACS34nikaido2.mov","thumbnail/20120926_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"642","","togotv.2012.077","","20120925","R+Bioconductorを使ったNGS解析1@AJACSみちのく2","本日の統合TVは、2012年8月23、24日に開催された、統合データベース講演会: AJACSみちのく2から、理化学研究所 発生・再生科学総合研究センター二階堂 愛 研究員 による「R+Bioconductorを使ったNGS解析1」をお送りします。約1時間40分です。","実習, AJACS,R,Bioconductor,NGS","http://youtu.be/D7aR0VX7ZAw","http://togotv.dbcls.jp/movie/120925AJACS34nikaido1.mov","http://doi.org/10.7875/togotv.2012.077","http://togotv.dbcls.jp/images/20120925_0.jpg","120925AJACS34nikaido1.mov","thumbnail/20120925_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"641","","togotv.2012.076","","20120912","文科省「ゲノム」研究報告書全文検索を使い倒す 2012","文科省「ゲノム」研究報告書全文検索は、文部科学省所管の科学研究費補助金(科研費)のうち、「ゲノム特定領域」に採択された研究課題の成果報告書データを検索できるサービスです。ゲノム特定4領域(生命システム情報、比較ゲノム、応用ゲノム、基盤ゲノム)のそれぞれに分類される研究課題を一覧したり、タイトルや著者などによる検索を行うことができます。さらに「全文検索」を用いると、報告書に含まれる全ての文字列からキーワード検索を行うことができます。","DBCLS,ゲノム,文献検索","http://youtu.be/BZwQGurjswg","http://togotv.dbcls.jp/movie/120912monkasho_genome.mov","http://doi.org/10.7875/togotv.2012.076","http://togotv.dbcls.jp/images/20120912_0.jpg","120912monkasho_genome.mov","thumbnail/20120912_0.jpg","1. 領域ごとの報告書データを一覧する(44秒)","2. タイトルや著者名などから絞り込む(1分51秒)","3. タイトルや著者名などを細かく指定して絞り込む(「Advanced Search」)(3分29秒)","4. 報告書に含まれる全ての文字列からキーワード検索する(「全文検索」)(4分25秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"640","","togotv.2012.075","","20120911","遺伝子発現プロファイルデータベースBioGPSを使い倒す 2012","BioGPS(「バイオジーピーエス」と読みます)はAffymetrix社製のマイクロアレイであるGeneChipを用いたヒト、マウス、ラットのさまざまな組織や細胞(株)における遺伝子発現プロファイルのデータベースです。検索した遺伝子に対して、種々の外部データベースを横断検索することができるだけでなく、それらの設定を保存したり、表示方法を自由にカスタマイズすることができることが特徴です。また参照できる外部データベースは、Wikipedia(Gene Wiki)、著名な試薬会社の検索窓へのリンク集、pathway、Nature系DB、モデル生物DB、文献DBなど多種多様で、マウスのエキソンアレイのデータから遺伝子のスプライシングバリアント(Splicing variant)の発現状況やCircadian関係のデータを調べることが可能です。さらに最近のアップデートで、NCBI Gene Expression Omnibus (GEO)中から選抜されたデータセットに切り替えて発現状況を調べることが可能になっています。","遺伝子,発現解析,データベース","http://youtu.be/X_exdocRIVQ","http://togotv.dbcls.jp/movie/120911BioGPS.mov","http://doi.org/10.7875/togotv.2012.075","http://togotv.dbcls.jp/images/20120911_0.jpg","120911BioGPS.mov","thumbnail/20120911_0.jpg","1. BioGPS で遺伝子を検索する。(33秒)","2. 発現強度のグラフを活用する。(2分11秒)","3. マウスの発現データを見る。(3分27秒)","4. データセットの検索と切替え。(5分22秒)","5. 外部のデータベースを見る。(8分05秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"639","","togotv.2012.074","","20120831","研究者のためのGoogle活用術 ~Google Scholarを中心に~","Google Scholarは、学術論文に特化したGoogleの検索サービスです。Google Scholarではその文献が引用された数を元に検索結果を表示するため、引用先の論文を非常に探しやすいという、PubMedには無い利点があります。 この動画は、統合TV「PubMedで論文を検索する」の続編に当たります。 動画内で、自分の論文が引用された際に通知を受け取る機能を紹介していますが、現在Googleアカウントを持っている人は、Google Citationに登録することで、自分の論文の被引用状況をグラフや3つのメトリックス(h-index、i-10 index、被引用総数)で知ることができます。この機能については動画内では紹介していませんが、興味のある方は登録して利用してみるのも良いでしょう。","文献検索,ウェブツール,Google","http://youtu.be/YTzxC38LFTY","http://togotv.dbcls.jp/movie/120831Google.mov","http://doi.org/10.7875/togotv.2012.074","http://togotv.dbcls.jp/images/20120831_0.jpg","120831Google.mov","thumbnail/20120831_0.jpg","1.被引用数に基づいた検索と引用先検索(34秒)","2.サイト指定検索(1分44秒)","3.ファイルタイプ指定検索(2分22秒)","4.おまけ:英語例文集としてのGoogle Scholar活用術(3分3秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"638","","togotv.2012.073","","20120830","PubMedで論文を検索する","PubMedは多くの方がご存知のように、NCBIの提供する医学・生物学分野の論文検索サービスです。 今回の動画では、PubMedの基本的な使い方だけでなく、より効率良く欲しい論文を手に入れるにはどうすればいいのかを紹介しています。","文献検索,NCBI,データベース","http://youtu.be/JAcC4TFL5Vg","http://togotv.dbcls.jp/movie/120830pubmed.mov","http://doi.org/10.7875/togotv.2012.073","http://togotv.dbcls.jp/images/20120830_0.jpg","120830pubmed.mov","thumbnail/20120830_0.jpg","1. とにかく検索をしてみる(10秒)","2. filter機能を使ってみる(1分57秒)","3. PubMed Centralで論文を読む(1分52秒)","4. 実際の検索式を見てみる(2分55秒)","5. Advanced検索で詳細に条件を指定する(3分55秒)","6. single Citation Matcherで特定の1つの論文を取得する(5分41秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"637","","togotv.2012.072","","20120827","DBCLS Galaxy EMBOSSの使い方〜ドットプロット編〜","Galaxyは主に生物系のデータ(ゲノムなど)を解析するための環境です。ウェブ上のインターフェースで簡単に操作できます。この動画では、DBCLSがGalaxyに独自の機能を組み込んだDBCLS Galaxy内で解析ツールパッケージの1つであるEMBOSSを使う方法を説明します。今回は、ドットプロットを作成するツール(dottup, dotpath, dotmatcher, polydot)の紹介をします。","EMBOSS,塩基配列,配列解析,アミノ酸,DBCLS,Galaxy","http://youtu.be/HoCHMopEt7A","http://togotv.dbcls.jp/movie/120827GalaxyDot.mov","http://doi.org/10.7875/togotv.2012.072","http://togotv.dbcls.jp/images/20120827_0.jpg","120827GalaxyDot.mov","thumbnail/20120827_0.jpg","1.配列データのアップロード (1分3秒)","2.dottupの使い方 (2分15秒)","3.dotpathの使い方 (3分44秒)","4.dotmatcherの使い方 (4分58秒)","5.polydotの使い方 (6分18秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"636","","togotv.2012.071","","20120821","DBCLS Galaxy EMBOSSの使い方〜配列検索編〜","Galaxyは主に生物系のデータ(ゲノムなど)を解析するための環境です。ウェブ上のインターフェースで簡単に操作できます。この動画では、DBCLSがGalaxyに独自の機能を組み込んだDBCLS Galaxy内で解析ツールパッケージの1つであるEMBOSSを使う方法を説明します。今回は、アラインメントを行うツール(fuzzpro, fuzznuc, fuzztran)の紹介をします。","EMBOSS,塩基配列,配列解析,アミノ酸,DBCLS,Galaxy,ウェブツール","http://youtu.be/bzge7hvGK60","http://togotv.dbcls.jp/movie/120821GalaxySearch1.mov","http://doi.org/10.7875/togotv.2012.071","http://togotv.dbcls.jp/images/20120821_0.jpg","120821GalaxySearch1.mov","thumbnail/20120821_0.jpg","1.配列データのアップロード (0分50秒)","2.fuzzproの使い方 (2分53秒)","3.PROSITE表記での詳細検索 (4分52秒)","4.fuzznucの使い方 (6分25秒)","5.fuzztranの使い方 (7分38秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"635","","togotv.2012.070","","20120820","WindowsでUNIX! 4. ファイル操作発展編","Cygwinは、Windows上で、Unix系の便利なプログラムを利用するためのツールです。具体的には、マイクロアレイのデータを簡単に編集するなどのテキスト編集や、正規表現を用いた柔軟なファイル操作、そして、プログラム環境やツールの簡単なインストールなど、利用性は多岐に富んでいます。今回は、2つの大きなファイルの差分をとる方法を中心に、前回の動画より発展的なファイル操作について解説していきます。","環境設定,プログラミング,UNIX","http://youtu.be/vKHPFJngiYY","http://togotv.dbcls.jp/movie/120820cygwin_advanced2.mov","http://doi.org/10.7875/togotv.2012.070","http://togotv.dbcls.jp/images/20120820_0.jpg","120820cygwin_advanced2.mov","thumbnail/20120820_0.jpg","Step1: それぞれのファイルをsortする。 (20秒)","Step2: それぞれのファイルの差分(diff)をとる。 (2分18秒)","Step3: diffの結果をAWKでわかりやすい形式にする。 (4分42秒)","Step4: Step2とStep3をパイプを使って一度にやる。 (7分5秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"634","","togotv.2012.069","","20120809","創薬・疾患のためのデータベース横断検索サービスSagaceを使い倒す","Sagaceは、国内のデータベースを検索対象とした創薬・疾患研究のための生命科学分野のデータベース横断検索サービスです。NBDC(バイオサイエンスデータベースセンター)との連携を通じて医薬基盤研究所によって構築・運営されています。 Sagaceの特徴は、医学/生命科学分野に特化したデータベースの選定と分類を行なっていること、ファセット(データベースの特徴ごとの分類項目)を用いた効率的な絞り込みを行なっていること、メタデータ(データ自身に関する情報を持ったデータ)の利用により、データが載っているデータベースそのものの情報が検索結果から得られることです。","文献検索,データベース,情報収集","http://youtu.be/dXzrSVCvo2w","http://togotv.dbcls.jp/movie/120809Sagace.mov","http://doi.org/10.7875/togotv.2012.069","http://togotv.dbcls.jp/images/20120809_0.jpg","120809Sagace.mov","thumbnail/20120809_0.jpg","1. 検索結果の見方(1分13秒)","2. ファセット項目を用いた分類方法(3分31秒)","3. 2つのファセットを利用した絞込み(4分25秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"633","","togotv.2012.068","","20120801","第35回日本分子生物学会年会オンライン要旨集Trailer","第35回日本分子生物学会のIT企画では、学会本来の魅力を引き出すために様々な企画と、それを支えるITシステムを開発しています。こういった取り組みは 「学会年会としては世界初のチャレンジ」ということで、「学会参加者みなさまに積極的に活用していただければ、誰も経験したことがないメチャクチャ面白い年会がきっと実現できます。」という 学会スタッフの方々の想いに賛同し、このたび統合TVでこのITシステムの予告編動画を作成、公開する運びとなりました。","DBCLS","http://youtu.be/bmilF7rgLr0","http://togotv.dbcls.jp/movie/120801MBSJ2012trailer.mov","http://doi.org/10.7875/togotv.2012.068","http://togotv.dbcls.jp/images/20120801_0.jpg","120801MBSJ2012trailer.mov","thumbnail/20120801_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"632","","togotv.2012.067","","20120730","DDBJパイプラインによる高速シーケンスデータ解析@AJACS名古屋","本日の統合TVは、2012年7月27日に開催された、統合データベース講演会: AJACS名古屋から、国立遺伝学研究所 大量遺伝情報研究室 長崎 英樹 特任研究員 による「DDBJパイプラインによる高速シーケンスデータ解析」をお送りします。約32分です。","実習, AJACS,DDBJ,パイプライン,NGS","http://youtu.be/5Y7E-vWPYaY","http://togotv.dbcls.jp/movie/120730AJACS32nagasaki.mov","http://doi.org/10.7875/togotv.2012.067","http://togotv.dbcls.jp/images/20120730_0.jpg","120730AJACS32nagasaki.mov","thumbnail/20120730_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"631","","togotv.2012.066","","20120720","BioMartを使い倒す〜遺伝子の上流配列を取得する〜2012","biomartは、the Ontario Institute for Cancer Research (OiCR) と the European Bioinformatics Institute (EBI) が共同で開発しているクエリ指向型データ管理システムです。今回は、Ensemblのbiomartを用いて、全ての遺伝子の転写開始点から上流の配列1kbをマウスゲノムから抽出してFASTA形式で得る方法について説明しています。","ゲノム,遺伝子,塩基配列,データベース","http://youtu.be/oPcF22KKuLI","http://togotv.dbcls.jp/movie/120720biomart_upstream.mov","http://doi.org/10.7875/togotv.2012.066","http://togotv.dbcls.jp/images/20120720_0.jpg","120720biomart_upstream.mov","thumbnail/20120720_0.jpg","1.BioMartトップページ (27秒)","2.DATASETSの選択 (1分10秒)","3.SEQUENCES (1分39秒)","4.FILTERS (2分19秒)","5.HEADER INFORMAION (2分48秒)","6.検索結果の表示 (3分12秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"630","","togotv.2012.065","","20120713","CueMol2でタンパク質の構造を見る 〜応用編・2〜","CueMol2はタンパク質はじめ生体高分子の構造を見るための日本製のフリーソフトウェアです。 統合TV「CueMol2でタンパク質の立体構造を見る」「CueMol2でタンパク質の立体構造を見る・2」に引き続き、「CueMol2 でタンパク質の立体構造を見る 〜応用編・1〜」およびこの動画ではタンパク質分子のモデルを可視化し、分子の性質を探ったりより美しい分子のグラフィックを作製したりといった、さらに応用的な使い方を紹介します。 今回の動画では「分子表面の生成」「溶媒接触表面など分子の断面の生成」「APBSによる静電ポテンシャルマップの生成」「分子重ね合わせ」の方法を紹介します。","タンパク質,構造解析,可視化,ソフトウェア","http://youtu.be/m60HPQ0kIjM","http://togotv.dbcls.jp/movie/120713_cuemol2_from_machine_2.mov","http://doi.org/10.7875/togotv.2012.065","http://togotv.dbcls.jp/images/20120713_0.jpg","120713_cuemol2_from_machine_2.mov","thumbnail/20120713_0.jpg","1. 分子表面の生成(18秒)","2. 溶媒接触表面など分子の断面の生成(1分44秒)","3. APBSによる静電ポテンシャルマップの生成(3分25秒)","4. 分子重ね合わせ(6分15秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"629","","togotv.2012.064","","20120712","CueMol2でタンパク質の構造を見る 〜応用編・1〜","CueMol2はタンパク質はじめ生体高分子の構造を見るための日本製のフリーソフトウェアです。 統合TV「CueMol2でタンパク質の立体構造を見る」「CueMol2でタンパク質の立体構造を見る・2」に引き続き、この動画と次の動画ではタンパク質分子のモデルを可視化し、分子の性質を探ったりより美しい分子のグラフィックを作製したりといった、さらに応用的な使い方を紹介します。 まずこの動画では「原子間の距離を測る、原子間の相互作用を点線で表す」「Object, Renderer, Camera のコピー&ペースト」「POV-Rayで分子モデルをレンダリングする」方法を紹介します。","タンパク質,構造解析,可視化,ソフトウェア","http://youtu.be/vbJ1FueBi-M","http://togotv.dbcls.jp/movie/120712_cuemol2_from_machine_1.mov","http://doi.org/10.7875/togotv.2012.064","http://togotv.dbcls.jp/images/20120712_0.jpg","120712_cuemol2_from_machine_1.mov","thumbnail/20120712_0.jpg","1. 原子間の距離を測る(29秒)","2. Object, Renderer, Camera のコピー&ペースト(3分9秒)","3. POV-Rayで分子モデルをレンダリングする(5分24秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"628","","togotv.2012.063","","20120710","WindowsでUNIX! 3. ファイル操作応用編","Cygwinは、Windows上で、Unix系の便利なプログラムを利用するためのツールです。具体的には、マイクロアレイのデータを簡単に編集するなどのテキスト編集や、正規表現を用いた柔軟なファイル操作、そして、プログラム環境やツールの簡単なインストールなど、利用性は多岐に富んでいます。 今回は、前回の動画より応用的なファイル操作について解説していきます。","環境設定,プログラミング,UNIX","http://youtu.be/NX0NLkA-Oyk","http://togotv.dbcls.jp/movie/120710cygwin_advanced1.mov","http://doi.org/10.7875/togotv.2012.063","http://togotv.dbcls.jp/images/20120710_0.jpg","120710cygwin_advanced1.mov","thumbnail/20120710_0.jpg","1.wcコマンドでテキストファイルの大きさを調べる。 (9秒)","2.lessコマンドで大きいテキストファイルを閲覧する。 (44秒)","3.gzipコマンドでデータを圧縮・展開する。 (1分58秒)","4.tarコマンドで複数のファイルを1つにまとめて圧縮する。 (3分11秒)","5.findコマンドでファイルやディレクトリの検索をする。 (4分51秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"627","","togotv.2012.062","","20120628","BioMartを使って二つの生物種の対応するデータを取得する","BioMartは、the Ontario Institute for Cancer Research (OiCR) と the European Bioinformatics Institute (EBI) が共同で開発しているクエリ指向型データ管理システムです。これを使うといろいろなことができますが、今回は二つの生物種の対応するデータを取得する方法を解説します。","ゲノム,塩基配列,データベース","http://youtu.be/Ug3jL46dYkU","http://togotv.dbcls.jp/movie/120628biomart_compara.mov","http://doi.org/10.7875/togotv.2012.062","http://togotv.dbcls.jp/images/20120628_0.jpg","120628biomart_compara.mov","thumbnail/20120628_0.jpg","1.BioMartトップページ (0分18秒)","2.データセット選択 (1分14秒)","3.Filters (1分53秒)","4.Output (2分43秒)","5.Results (5分29秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"626","","togotv.2012.061","","20120626","Avadis NGS の使い方〜ChIP-seq編〜","今回の統合TVでは Avadis NGS による ChIP-seq 解析の方法を解説します。Avadis NGS は次世代シーケンサ(Next Generation Sequencer 以下 NGS)から得られたデータの解析のための商用ソフトウェアです(無料で20日間試用できます)。Strand Scientific Intelligence 社が開発、日本では Agilent 社が販売しています。Avadis NGS ではマッピングされたショートリードのデータ(SAM や BAM フォーマット)を読み込み、クオリティ・チェックを施した上で各種の解析およびその可視化を行う、という一連の流れを一つのソフトだけで行うことができます。","NGS,遺伝子,発現解析,ソフトウェア,NGS,ChIP-seq","http://youtu.be/7hIkJEKkeE0","http://togotv.dbcls.jp/movie/120626Avadis_NGS_ChIP_seq.mov","http://doi.org/10.7875/togotv.2012.061","http://togotv.dbcls.jp/images/20120626_0.jpg","120626Avadis_NGS_ChIP_seq.mov","thumbnail/20120626_0.jpg","1.ピーク検出 (1分30秒)","2.モチーフ探索 (4分17秒)","3.周辺の遺伝子の探索 (5分30秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"625","","togotv.2012.060","","20120615","DBCLS Galaxy EMBOSSの使い方〜アラインメント編〜","Galaxyは主に生物系のデータ(ゲノムなど)を解析するための環境です。ウェブ上のインターフェースで簡単に操作できます。この動画では、DBCLSがGalaxyに独自の機能を組み込んだDBCLS Galaxy内で解析ツールパッケージの1つであるEMBOSSを使う方法を説明します。今回は、アラインメントを行うツール(needle, water, wordmatch)の紹介をします。","EMBOSS,塩基配列,配列解析,アミノ酸,DBCLS,Galaxy,ウェブツール","http://youtu.be/5ZWt1T59IUo","http://togotv.dbcls.jp/movie/120615GalaxyAlignment.mov","http://doi.org/10.7875/togotv.2012.060","http://togotv.dbcls.jp/images/20120615_0.jpg","120615GalaxyAlignment.mov","thumbnail/20120615_0.jpg","1.配列データのアップロード (0分53秒)","2.needleの使い方 (2分33秒)","3.アミノ酸配列のアラインメント (5分2秒)","4.waterの使い方 (5分49秒)","5.wordmatchの使い方 (7分11秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"624","","togotv.2012.059","","20120612","オーソログDB Inparanoidの使い方","Inparanoidは、スウェーデンのストックホルムバイオインフォマティクスセンター(SBC)が提供するオーソログのデータベースで、17種類の生物についてそれぞれのオーソログ遺伝子/タンパク質を調べることができます。今回の動画では、Inparanoidで使うことのできる4つのオーソログ検索方法について紹介します。","ゲノム,遺伝子,タンパク質,データベース,オーソログ","http://youtu.be/KHXg3AkFH2o","http://togotv.dbcls.jp/movie/120612Inparanoid.mov","http://doi.org/10.7875/togotv.2012.059","http://togotv.dbcls.jp/images/20120612_0.jpg","120612Inparanoid.mov","thumbnail/20120612_0.jpg","1. Inparanoidへの行き方(17秒)","2. Browse機能の使い方(45秒)","3. オーソログの詳細ページの解説(2分12秒)","4. Gene search機能の使い方(4分23秒)","5. Text search機能の使い方(6分11秒)","6. Blast機能の使い方(7分35秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"623","","togotv.2012.058","","20120528","UCSC Genome Browserの使い方〜表示+ENCODE編〜 2012","UCSC Genome Browserは、 米国カリフォルニア大学サンタクルーズ校(UCSC)が開発、維持しているゲノムブラウザ、ゲノムアノテーション閲覧システムです。ゲノムブラウザとはアノテーションが付加された遺伝子のゲノム上の位置やその周辺を表示するツールのことです。今回は前回作成時(2009年)のアップデート版という位置づけで、2012年最新版の使い方をデータの表示方法を中心に紹介するとともに、最近充実してきているENCODE projectのデータの表示方法について「Open Chromatin」および「Yale TFBS」を例に説明します。","ゲノム,遺伝子,可視化,UCSC,データベース,転写因子","http://youtu.be/AleaXJKHuiY","http://togotv.dbcls.jp/movie/120528ucscENCODE.mov","http://doi.org/10.7875/togotv.2012.058","http://togotv.dbcls.jp/images/20120528_0.jpg","120528ucscENCODE.mov","thumbnail/20120528_0.jpg","1. 目的遺伝子の検索と表示(30秒)","2. 表示させるゲノム領域の移動および拡大、縮小(2分7秒)","3. 表示するデータを追加する(4分0秒)","4. ゲノムのバージョンによる違い(5分4秒)","5. ENCODEのデータを表示する(5分44秒)","6.特定の転写因子の結合サイトを調べる(7分52秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"622","","togotv.2012.057","","20120525","DBCLS Galaxy EMBOSSの使い方〜配列変換編〜","Galaxyは主に生物系のデータ(ゲノムなど)を解析するための環境です。ウェブ上のインターフェースで簡単に操作できます。この動画では、DBCLSがGalaxyに独自の機能を組み込んだDBCLS Galaxy内で解析ツールパッケージの1つであるEMBOSSを使う方法を説明します。今回は、主に配列を変換するツール(revseq, prettyseq, sixpack, backtranseq)の紹介をします。","EMBOSS,塩基配列,配列解析,アミノ酸,DBCLS,Galaxy,ウェブツール","http://youtu.be/wPCKe3FWBJI","http://togotv.dbcls.jp/movie/120525galaxyemboss_convert.mov","http://doi.org/10.7875/togotv.2012.057","http://togotv.dbcls.jp/images/20120525_0.jpg","120525galaxyemboss_convert.mov","thumbnail/20120525_0.jpg","1. 配列データのアップロード (0分51秒)","2. revseqの使い方 (2分42秒)","3. prettyseqの使い方 (4分1秒)","4. sixpackの使い方 (6分36秒)","5. backtranseqの使い方 (7分26秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"621","","togotv.2012.056","","20120524","NCBI GEOの使い方5〜GEO2Rを使う〜","NCBI GEOはNCBIが提供・維持管理している遺伝子発現情報のデータベースです。今回はGEOの使い方第5弾として、GEOに登録されているマイクロアレイ実験のデータを、フリーのデータ解析環境 R をベースに解析できるツール GEO2R の使い方を説明します。 GEOに登録されているデータから、それぞれのサンプルを発現量の差を調べたいグループに分け、検定の結果発現量に差が大きいとされた上位の遺伝子を表示するまでの流れを例にあげています。","発現解析,遺伝子,データベース,NCBI,R,GEO","http://youtu.be/qaGlQJ-uJ1g","http://togotv.dbcls.jp/movie/120524geo2r.mov","http://doi.org/10.7875/togotv.2012.056","http://togotv.dbcls.jp/images/20120524_0.jpg","120524geo2r.mov","thumbnail/20120524_0.jpg","1. グループ選択(59秒)","2. 発現分布のチェック(2分42秒)","3. 検定の実行結果(4分1秒)","4. オプションの変更(6分36秒)","5. 特定の遺伝子の発現量(7分26秒)","6. Rのスクリプト(8分51秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"620","","togotv.2012.055","","20120404","KEGG、GenomeNetのサービス・利用法@AJACS本郷11","本日の統合TVは、2012年3月2日に開催された、統合データベース講演会: AJACS本郷11から、京都大学化学研究所 バイオインフォマティクスセンター 時松 敏明 特任助教 による「KEGG、GenomeNetのサービス・利用法」をお送りします。約63分です。","実習, AJACS,KEGG","http://youtu.be/TR3KdZpLBX4","http://togotv.dbcls.jp/movie/120404AJACS29_tokimatsu.mov","http://doi.org/10.7875/togotv.2012.055","http://togotv.dbcls.jp/images/20120404_0.jpg","120404AJACS29_tokimatsu.mov","thumbnail/20120404_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"619","","togotv.2012.054","","20120403","PDBjのサービス・使い方紹介@AJACS本郷11","本日の統合TVは、2012年3月2日に開催された、統合データベース講演会: AJACS本郷11から、大阪大学蛋白質研究所 工藤 高裕 特任研究員 による「PDBjのサービス・使い方紹介」をお送りします。約56分です。","実習, AJACS,PDBj","http://youtu.be/TA3ibGL0HBo","http://togotv.dbcls.jp/movie/120403AJACS29_kudou.mov","http://doi.org/10.7875/togotv.2012.054","http://togotv.dbcls.jp/images/20120403_0.jpg","120403AJACS29_kudou.mov","thumbnail/20120403_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"618","","togotv.2012.053","","20120402","DDBJのサービス紹介@AJACS本郷11","本日の統合TVは、2012年3月2日に開催された、統合データベース講演会: AJACS本郷11から、国立遺伝学研究所CIB・DDBJ研究センター中村 保一 教授 による「DDBJのサービス紹介」をお送りします。約45分です。","講演, AJACS,DDBJ","http://youtu.be/aLbDRf0vsZg","http://togotv.dbcls.jp/movie/120402AJACS29_nakamura.mov","http://doi.org/10.7875/togotv.2012.053","http://togotv.dbcls.jp/images/20120402_0.jpg","120402AJACS29_nakamura.mov","thumbnail/20120402_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"617","","togotv.2012.052","","20120401","DBCLSのサービス紹介・使い方紹介@AJACS本郷11","本日の統合TVは、2012年3月2日に開催された、統合データベース講演会: AJACS本郷11から、DBCLS 川本 祥子 による「DBCLSのサービス紹介・使い方紹介」をお送りします。約53分です。","実習, AJACS,DBCLS","http://youtu.be/PGhVzioBl4U","http://togotv.dbcls.jp/movie/120401AJACS29_kawamot.mov","http://doi.org/10.7875/togotv.2012.052","http://togotv.dbcls.jp/images/20120401_0.jpg","120401AJACS29_kawamot.mov","thumbnail/20120401_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"616","","togotv.2012.051","","20120331","NBDCの紹介@AJACS本郷11","本日の統合TVは、2012年3月2日に開催された、統合データベース講演会: AJACS本郷11から、NBDC 畠中 秀樹 による「NBDCの紹介」をお送りします。約52分です。","講演, AJACS,NBDC","http://youtu.be/sDqyQkEGMRM","http://togotv.dbcls.jp/movie/120331AJACS29_hatanaka.mov","http://doi.org/10.7875/togotv.2012.051","http://togotv.dbcls.jp/images/20120331_0.jpg","120331AJACS29_hatanaka.mov","thumbnail/20120331_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"615","","togotv.2012.050","","20120330","PubChemを利用して化学物質やアッセイの結果を調べる","PubChemはNCBIが提供するデータベースです。アッセイの結果を収録したPubChem BioAssay、化学物質の情報を収録したPubChem CompoundおよびPubChem Substanceの3つから構成されます。今回は、PubChem BioAssayを利用してアッセイの結果を調べる方法と、PubChem Compoundを利用して化学物質の情報を調べる方法を解説しています。","化合物,可視化,疾患情報,NCBI,情報収集","http://youtu.be/I1d3A13iJT8","http://togotv.dbcls.jp/movie/120330PubChem.mov","http://doi.org/10.7875/togotv.2012.050","http://togotv.dbcls.jp/images/20120330_0.jpg","120330PubChem.mov","thumbnail/20120330_0.jpg","1. PubChemへの行き方(17秒)","2. PubChem Compoundを利用した化学物質の検索法(2分6秒)","3. PubChem Compoundの詳細ページの解説(3分30秒)","4. GLmolを利用した化学物質の構造の可視化(5分45秒)","5. PubChem BioAssayを利用したアッセイ結果の検索法(6分38秒)","6. PubChem BioAssayの詳細ページの解説(8分6秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"614","","togotv.2012.049","","20120329","牧場でのテキスト切り 落穂拾い@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、DBCLS 仲里 猛留 による「牧場でのテキスト切り 落穂拾い」をお送りします。約16分です。","講演, AJACS","http://youtu.be/cvINq4OxWcw","http://togotv.dbcls.jp/movie/120329AJACS30_nakazato.mov","http://doi.org/10.7875/togotv.2012.049","http://togotv.dbcls.jp/images/20120329_0.jpg","120329AJACS30_nakazato.mov","thumbnail/20120329_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"613","","togotv.2012.048","","20120328","オレがiPhone持ってドヤ顔するまで@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、DBCLS リサーチアシスタント @gentlementatu による「オレがiPhone持ってドヤ顔するまで」をお送りします。約18分です。","講演, AJACS","http://youtu.be/6A2zQ8ctYXQ","http://togotv.dbcls.jp/movie/120328AJACS30_mentatu.mov","http://doi.org/10.7875/togotv.2012.048","http://togotv.dbcls.jp/images/20120328_0.jpg","120328AJACS30_mentatu.mov","thumbnail/20120328_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"612","","togotv.2012.047","","20120327","新着論文レビューをテキストマイニング2.0:破@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、DBCLS リサーチアシスタント @gackelNL による「新着論文レビューをテキストマイニング2.0:破」をお送りします。約27分です。","講演, AJACS","http://youtu.be/IoWq1PZ78Nc","http://togotv.dbcls.jp/movie/120327AJACS30_gackel.mov","http://doi.org/10.7875/togotv.2012.047","http://togotv.dbcls.jp/images/20120327_0.jpg","120327AJACS30_gackel.mov","thumbnail/20120327_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"611","","togotv.2012.046","","20120326","新着論文レビューをテキストマイニング1.0:序@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、DBCLS リサーチアシスタント @tabris2012 による「新着論文レビューをテキストマイニング1.0:序」をお送りします。約30分です。","講演, AJACS","http://youtu.be/cmABSl84hKY","http://togotv.dbcls.jp/movie/120326AJACS30_tabris.mov","http://doi.org/10.7875/togotv.2012.046","http://togotv.dbcls.jp/images/20120326_0.jpg","120326AJACS30_tabris.mov","thumbnail/20120326_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"610","","togotv.2012.045","","20120325","ここはひとつ統合DB的活動を統合する方向で@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、国立遺伝学研究所CIB・DDBJ研究センター中村 保一 教授 による「ここはひとつ統合DB的活動を統合する方向で」をお送りします。約15分です。","講演, AJACS","http://youtu.be/Wf36LOB6vRI","http://togotv.dbcls.jp/movie/120325AJACS30_yaskaz.mov","http://doi.org/10.7875/togotv.2012.045","http://togotv.dbcls.jp/images/20120325_0.jpg","120325AJACS30_yaskaz.mov","thumbnail/20120325_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"609","","togotv.2012.044","","20120324","公共データベースから必要なデータを抽出して使いやすくするだけの簡単なお仕事@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、DBCLS リサーチアシスタント @meguu による「公共データベースから必要なデータを抽出して使いやすくするだけの簡単なお仕事」をお送りします。約8分です。","講演, AJACS","http://youtu.be/unU0oaFMOew","http://togotv.dbcls.jp/movie/120324AJACS30_meguu.mov","http://doi.org/10.7875/togotv.2012.044","http://togotv.dbcls.jp/images/20120324_0.jpg","120324AJACS30_meguu.mov","thumbnail/20120324_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"608","","togotv.2012.043","","20120323","来たれソムリエ!次世代型統合TVへの挑戦@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、DBCLS 坊農 秀雅 による「来たれソムリエ!次世代型統合TVへの挑戦」をお送りします。約12分です。","講演, AJACS","http://youtu.be/ClG1XAN46fo","http://togotv.dbcls.jp/movie/120323AJACS30_bono.mov","http://doi.org/10.7875/togotv.2012.043","http://togotv.dbcls.jp/images/20120323_0.jpg","120323AJACS30_bono.mov","thumbnail/20120323_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"607","","togotv.2012.042","","20120322","Trac or tweet! 〜もしくはCSCWで協働プロジェクト〜@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、DBCLS 岡本 忍 による「Trac or tweet! 〜もしくはCSCWで協働プロジェクト〜」をお送りします。約28分です。","講演, AJACS","http://youtu.be/NIeO7PTvoJ4","http://togotv.dbcls.jp/movie/120322AJACS30_synobu.mov","http://doi.org/10.7875/togotv.2012.042","http://togotv.dbcls.jp/images/20120322_0.jpg","120322AJACS30_synobu.mov","thumbnail/20120322_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"606","","togotv.2012.041","","20120321","統合TV雑話@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、DBCLS リサーチアシスタント @Mozk_ による「統合TV雑話」をお送りします。約9分です。","講演, AJACS","http://youtu.be/CpFoLRMT2VE","http://togotv.dbcls.jp/movie/120321AJACS30_Mozk.mov","http://doi.org/10.7875/togotv.2012.041","http://togotv.dbcls.jp/images/20120321_0.jpg","120321AJACS30_Mozk.mov","thumbnail/20120321_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"605","","togotv.2012.040","","20120320","統合TVの制作現場から@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、DBCLS リサーチアシスタント @Taizo_Ayase による「統合TVの制作現場から」をお送りします。約8分です。","講演, AJACS","http://youtu.be/bmpK7XGiHoY","http://togotv.dbcls.jp/movie/120320AJACS30_ayase.mov","http://doi.org/10.7875/togotv.2012.040","http://togotv.dbcls.jp/images/20120320_0.jpg","120320AJACS30_ayase.mov","thumbnail/20120320_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"604","","togotv.2012.039","","20120319","統合TVを作成するお仕事 〜ツールを選んでから統合TVができるまで〜@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、DBCLS リサーチアシスタント @Go_with_twill による「統合TVを作成するお仕事 〜ツールを選んでから統合TVができるまで〜」をお送りします。約5分です。","講演, AJACS","http://youtu.be/b1l9E052OF8","http://togotv.dbcls.jp/movie/120319AJACS30_Go.mov","http://doi.org/10.7875/togotv.2012.039","http://togotv.dbcls.jp/images/20120319_0.jpg","120319AJACS30_Go.mov","thumbnail/20120319_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"603","","togotv.2012.038","","20120318","実験家見習いが覗く統合牧場 〜私にも!こんなに使える統合TV〜@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、DBCLS リサーチアシスタント @_junk_0 による「実験家見習いが覗く統合牧場 〜私にも!こんなに使える統合TV〜」をお送りします。約12分です。","講演, AJACS","http://youtu.be/3KQ1lic1J3s","http://togotv.dbcls.jp/movie/120318AJACS30_junk_0.mov","http://doi.org/10.7875/togotv.2012.038","http://togotv.dbcls.jp/images/20120318_0.jpg","120318AJACS30_junk_0.mov","thumbnail/20120318_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"602","","togotv.2012.037","","20120317","第三回統合牧場収穫祭開会の辞@AJACS本郷12","本日の統合TVは、2012年3月16日に開催された、統合データベース講演会: AJACS本郷12(第三回統合牧場収穫祭)から、DBCLS 大田 達郎 による「第三回統合牧場収穫祭開会の辞」をお送りします。約14分です。","講演, AJACS","http://youtu.be/ym9RFC_TylA","http://togotv.dbcls.jp/movie/120317AJACS30_iNut.mov","http://doi.org/10.7875/togotv.2012.037","http://togotv.dbcls.jp/images/20120317_0.jpg","120317AJACS30_iNut.mov","thumbnail/20120317_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"601","","togotv.2012.036","","20120316","【ゲノムリテラシー講座】トランスクリプトーム解析基礎演習(講義3)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2010年9月28日に開催された、バイオインフォマティクスの基礎:トランスクリプトーム解析・プロテオーム解析 から、油谷 幸代(産業技術総合研究所)による「トランスクリプトーム解析基礎演習(講義3)」をお送りします。約39分です。","講演,ゲノムリテラシー講座,発現解析,プロテオーム","http://youtu.be/mac3F_ZMIDs","http://togotv.dbcls.jp/movie/120316BIRDaburatani3.mov","http://doi.org/10.7875/togotv.2012.036","http://togotv.dbcls.jp/images/20120316_0.jpg","120316BIRDaburatani3.mov","thumbnail/20120316_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"600","","togotv.2012.035","","20120315","【ゲノムリテラシー講座】トランスクリプトーム解析・プロテオーム解析入門(講義2)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2010年9月28日に開催された、バイオインフォマティクスの基礎:トランスクリプトーム解析・プロテオーム解析 から、油谷 幸代(産業技術総合研究所)による「トランスクリプトーム解析・プロテオーム解析入門(講義2)」をお送りします。約60分です。","講演,ゲノムリテラシー講座,発現解析,プロテオーム","http://youtu.be/soMOvF9LWZI","http://togotv.dbcls.jp/movie/120315BIRDaburatani2.mov","http://doi.org/10.7875/togotv.2012.035","http://togotv.dbcls.jp/images/20120315_0.jpg","120315BIRDaburatani2.mov","thumbnail/20120315_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"599","","togotv.2012.034","","20120314","【ゲノムリテラシー講座】トランスクリプトーム解析・プロテオーム解析入門(講義1)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2010年9月28日に開催された、バイオインフォマティクスの基礎:トランスクリプトーム解析・プロテオーム解析 から、油谷 幸代(産業技術総合研究所)による「トランスクリプトーム解析・プロテオーム解析入門(講義1)」をお送りします。約76分です。","講演,ゲノムリテラシー講座,発現解析,プロテオーム","http://youtu.be/lOQTzI4ll_8","http://togotv.dbcls.jp/movie/120314BIRDaburatani1.mov","http://doi.org/10.7875/togotv.2012.034","http://togotv.dbcls.jp/images/20120314_0.jpg","120314BIRDaburatani1.mov","thumbnail/20120314_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"598","","togotv.2012.033","","20120313","【ゲノムリテラシー講座】分子系統解析(講義3)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2009年9月26日に開催された、バイオインフォマティクスの基礎:分子生物学データベース から、村上 勝彦(社団法人バイオ産業情報化コンソーシアム)による「分子系統解析(講義3)」をお送りします。約51分です。","講演,ゲノムリテラシー講座","http://youtu.be/K9Fy1LrtGco","http://togotv.dbcls.jp/movie/120313BIRDkawakami3.mov","http://doi.org/10.7875/togotv.2012.033","http://togotv.dbcls.jp/images/20120313_0.jpg","120313BIRDkawakami3.mov","thumbnail/20120313_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"597","","togotv.2012.032","","20120312","【ゲノムリテラシー講座】分子生物学データベース(講義2)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2009年9月26日に開催された、バイオインフォマティクスの基礎:分子生物学データベース から、村上 勝彦(社団法人バイオ産業情報化コンソーシアム)による「分子生物学データベース(講義2)」をお送りします。約46分です。","講演,ゲノムリテラシー講座,データベース","http://youtu.be/T4toDT2TLGo","http://togotv.dbcls.jp/movie/120312BIRDkawakami2.mov","http://doi.org/10.7875/togotv.2012.032","http://togotv.dbcls.jp/images/20120312_0.jpg","120312BIRDkawakami2.mov","thumbnail/20120312_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"596","","togotv.2012.031","","20120311","【ゲノムリテラシー講座】分子生物学データベース(講義1)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2009年9月26日に開催された、バイオインフォマティクスの基礎:分子生物学データベース から、村上 勝彦(社団法人バイオ産業情報化コンソーシアム)による「分子生物学データベース(講義1)」をお送りします。約68分です。","講演,ゲノムリテラシー講座,データベース","http://youtu.be/_pbFQUKRjuA","http://togotv.dbcls.jp/movie/120311BIRDkawakami1.mov","http://doi.org/10.7875/togotv.2012.031","http://togotv.dbcls.jp/images/20120311_0.jpg","120311BIRDkawakami1.mov","thumbnail/20120311_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"595","","togotv.2012.030","","20120310","【ゲノムリテラシー講座】タンパク質立体構造解析(講義3)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2009年9月12日に開催された、バイオインフォマティクス基礎講座:配列解析、タンパク質立体構造解析 から、川端 猛(奈良先端科学技術大学院大学)による「配列解析基礎(講義3)」をお送りします。約46分です。","講演,ゲノムリテラシー講座,タンパク質,構造解析,配列解析","http://youtu.be/HLv5EnPGmjY","http://togotv.dbcls.jp/movie/120310BIRDkawabata3.mov","http://doi.org/10.7875/togotv.2012.030","http://togotv.dbcls.jp/images/20120310_0.jpg","120310BIRDkawabata3.mov","thumbnail/20120310_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"594","","togotv.2012.029","","20120309","【ゲノムリテラシー講座】配列解析基礎(講義2)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2009年9月12日に開催された、バイオインフォマティクス基礎講座:配列解析、タンパク質立体構造解析 から、川端 猛(奈良先端科学技術大学院大学)による「配列解析基礎(講義2)」をお送りします。約67分です。","講演,ゲノムリテラシー講座,タンパク質,構造解析,配列解析","http://youtu.be/79cwxi2DEBI","http://togotv.dbcls.jp/movie/120309BIRDkawabata2.mov","http://doi.org/10.7875/togotv.2012.029","http://togotv.dbcls.jp/images/20120309_0.jpg","120309BIRDkawabata2.mov","thumbnail/20120309_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"593","","togotv.2012.028","","20120308","【ゲノムリテラシー講座】配列解析基礎(講義1)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2009年9月12日に開催された、バイオインフォマティクス基礎講座:配列解析、タンパク質立体構造解析 から、川端 猛(奈良先端科学技術大学院大学)による「配列解析基礎(講義1)」をお送りします。約68分です。","講演,ゲノムリテラシー講座,タンパク質,構造解析,配列解析","http://youtu.be/VpYaLtaU_dw","http://togotv.dbcls.jp/movie/120308BIRDkawabata1.mov","http://doi.org/10.7875/togotv.2012.028","http://togotv.dbcls.jp/images/20120308_0.jpg","120308BIRDkawabata1.mov","thumbnail/20120308_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"592","","togotv.2012.027","","20120307","【ゲノムリテラシー講座】パスウェイ解析/システム生物学演習(講義3)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2010年9月7日に開催された、バイオインフォマティクスの基礎:パスウェイ解析・システム生物学 から、竹本 和広(JSTさきがけ)による「パスウェイ解析/システム生物学演習(講義3)」をお送りします。約53分です。","講演,ゲノムリテラシー講座,パスウェイ解析","http://youtu.be/4R8R3v8pZu8","http://togotv.dbcls.jp/movie/120307BIRDtakemoto3.mov","http://doi.org/10.7875/togotv.2012.027","http://togotv.dbcls.jp/images/20120307_0.jpg","120307BIRDtakemoto3.mov","thumbnail/20120307_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"591","","togotv.2012.026","","20120306","【ゲノムリテラシー講座】パスウェイ解析/システム生物学入門(講義2)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2010年9月7日に開催された、バイオインフォマティクスの基礎:パスウェイ解析・システム生物学 から、竹本 和広(JSTさきがけ)による「パスウェイ解析/システム生物学入門(講義2)」をお送りします。約76分です。","講演,ゲノムリテラシー講座,パスウェイ解析","http://youtu.be/zx5thKV2YXc","http://togotv.dbcls.jp/movie/120306BIRDtakemoto2.mov","http://doi.org/10.7875/togotv.2012.026","http://togotv.dbcls.jp/images/20120306_0.jpg","120306BIRDtakemoto2.mov","thumbnail/20120306_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"590","","togotv.2012.025","","20120305","【ゲノムリテラシー講座】パスウェイ解析/システム生物学入門(講義1)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2010年9月7日に開催された、バイオインフォマティクスの基礎:パスウェイ解析・システム生物学 から、竹本 和広(JSTさきがけ)による「パスウェイ解析/システム生物学入門(講義1)」をお送りします。約74分です。","講演,ゲノムリテラシー講座,パスウェイ解析","http://youtu.be/DCvT807alQk","http://togotv.dbcls.jp/movie/120305BIRDtakemoto1.mov","http://doi.org/10.7875/togotv.2012.025","http://togotv.dbcls.jp/images/20120305_0.jpg","120305BIRDtakemoto1.mov","thumbnail/20120305_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"589","","togotv.2012.024","","20120304","【ゲノムリテラシー講座】ヒト遺伝子データベースの活用法(講義3)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2009年8月29日に開催された、バイオインフォマティクスの基礎:生命科学一般 から、山口 由美(理化学研究所) による「ヒト遺伝子データベースの活用法(講義3)」をお送りします。約34分です。","講演,ゲノムリテラシー講座,遺伝子,データベース","http://youtu.be/7nj-Cj17wsA","http://togotv.dbcls.jp/movie/120304BIRDyamaguchi3.mov","http://doi.org/10.7875/togotv.2012.024","http://togotv.dbcls.jp/images/20120304_0.jpg","120304BIRDyamaguchi3.mov","thumbnail/20120304_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"588","","togotv.2012.023","","20120303","【ゲノムリテラシー講座】生命体の成り立ちと情報の流れ(講義2)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2009年8月29日に開催された、バイオインフォマティクスの基礎:生命科学一般 から、山口 由美(理化学研究所) による「生命体の成り立ちと情報の流れ(講義2)」をお送りします。約61分です。","講演,ゲノムリテラシー講座","http://youtu.be/4PteF9GLp18","http://togotv.dbcls.jp/movie/120303BIRDyamaguchi2.mov","http://doi.org/10.7875/togotv.2012.023","http://togotv.dbcls.jp/images/20120303_0.jpg","120303BIRDyamaguchi2.mov","thumbnail/20120303_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"587","","togotv.2012.022","","20120302","【ゲノムリテラシー講座】生命体の成り立ちと情報の流れ(講義1)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2009年8月29日に開催された、バイオインフォマティクスの基礎:生命科学一般 から、山口 由美(理化学研究所) による「生命体の成り立ちと情報の流れ(講義1)」をお送りします。約48分です。","講演,ゲノムリテラシー講座","http://youtu.be/FEBIj2_NwH4","http://togotv.dbcls.jp/movie/120302BIRDyamaguchi1.mov","http://doi.org/10.7875/togotv.2012.022","http://togotv.dbcls.jp/images/20120302_0.jpg","120302BIRDyamaguchi1.mov","thumbnail/20120302_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"586","","togotv.2012.021","","20120301","【ゲノムリテラシー講座】バイオインフォマティクス技術者認定試験・情報学分野の解説(講義3)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2009年7月25日に開催された、バイオインフォマティクスの基礎:情報学一般 から、 加藤 毅(お茶の水女子大学) による「バイオインフォマティクス技術者認定試験・情報学分野の解説(講義3)」をお送りします。約14分です。","講演,ゲノムリテラシー講座","http://youtu.be/JTZgtKoUGNc","http://togotv.dbcls.jp/movie/120301BIRDkato3.mov","http://doi.org/10.7875/togotv.2012.021","http://togotv.dbcls.jp/images/20120301_0.jpg","120301BIRDkato3.mov","thumbnail/20120301_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"585","","togotv.2012.020","","20120229","【ゲノムリテラシー講座】バイオインフォマティクス技術者認定試験・情報学分野の解説(講義2)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2009年7月25日に開催された、バイオインフォマティクスの基礎:情報学一般 から、 加藤 毅(お茶の水女子大学) による「バイオインフォマティクス技術者認定試験・情報学分野の解説(講義2)」をお送りします。約66分です。","講演,ゲノムリテラシー講座","http://youtu.be/7lwpJLlTqM4","http://togotv.dbcls.jp/movie/120229BIRDkato2.mov","http://doi.org/10.7875/togotv.2012.020","http://togotv.dbcls.jp/images/20120229_0.jpg","120229BIRDkato2.mov","thumbnail/20120229_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"584","","togotv.2012.019","","20120228","【ゲノムリテラシー講座】バイオインフォマティクス技術者認定試験・情報学分野の解説(講義1)","本日の統合TVは、JSTバイオインフォマティクス推進センター(BIRD) ゲノムリテラシー講座において2009年7月25日に開催された、バイオインフォマティクスの基礎:情報学一般 から、 加藤 毅(お茶の水女子大学) による「バイオインフォマティクス技術者認定試験・情報学分野の解説(講義1)」をお送りします。約66分です。","講演,ゲノムリテラシー講座","http://youtu.be/l5tbHwItawE","http://togotv.dbcls.jp/movie/120228BIRDkato1.mov","http://doi.org/10.7875/togotv.2012.019","http://togotv.dbcls.jp/images/20120228_0.jpg","120228BIRDkato1.mov","thumbnail/20120228_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"583","","togotv.2012.018","","20120227","NCBI GEOの使い方4〜データセットブラウザの使い方2〜 2012","NCBI GEOはNCBIが提供・維持管理している遺伝子発現情報のデータベースです。今回はGEOの使い方第4弾として、データセットブラウザ(Dataset browser)からダウンロードできるファイルの説明や、発現に有意な変化のある遺伝子を探すツール、各サンプルの発現量の分布を見るツールなどの説明をしています。","発現解析,NCBI,データベース,GEO","http://youtu.be/6caLQ-Sp8dE","http://togotv.dbcls.jp/movie/120227ncbigeo4.mov","http://doi.org/10.7875/togotv.2012.018","http://togotv.dbcls.jp/images/20120227_0.jpg","120227ncbigeo4.mov","thumbnail/20120227_0.jpg","1. ダウンロード可能なデータの説明(38秒)","2. 遺伝子検索ツール(1分46秒)","3. サンプル群間で発現変化のある遺伝子の検索(3分21秒)","4. 発現量の分布(5分29秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"582","","togotv.2012.017","","20120221","統合TVの作り方 in Camtasia Studio7 〜編集編〜","今回の番組では、統合TVがどのようにして作られているかを紹介します。今回は、Camtasia Studio(カムタジアスタジオ)7を用いた製作場面の中で、動画の編集作業についてお送りします。さああなたも統合TVを作ってみませんか!?","DBCLS","http://youtu.be/KQbzjj_fTNw","http://togotv.dbcls.jp/movie/120221CamtasiaEdit.mov","http://doi.org/10.7875/togotv.2012.017","http://togotv.dbcls.jp/images/20120221_0.jpg","120221CamtasiaEdit.mov","thumbnail/20120221_0.jpg","1.フレームの延長と吹き出しの挿入 (1分4秒)","2.ズームとパンの設定 (4分54秒)","3.カーソル効果の追加 (5分54秒)","4.画面切り替えの設定 (6分39秒)","5.opening/endingクリップとBGMの挿入 (7分23秒)","6.動画の出力 (10分32秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"581","","togotv.2012.016","","20120220","統合TVの作り方 in Camtasia Studio7 〜撮影編〜","今回の番組では、統合TVがどのようにして作られているかを紹介します。今回は、Camtasia Studio(カムタジアスタジオ)7を用いた製作場面のうち、動画の撮影についてお送りします。動画の編集編はこちらです。さああなたも統合TVを作ってみませんか!?","DBCLS","http://youtu.be/Kg7UDI6mMqw","http://togotv.dbcls.jp/movie/120220CamREC_6.mov","http://doi.org/10.7875/togotv.2012.016","http://togotv.dbcls.jp/images/20120220_0.jpg","120220CamREC_6.mov","thumbnail/20120220_0.jpg","1.Camtasia Recorderの起動と録画枠の調整 (9秒)","2.録画の開始 (1分25秒)","3.動画の保存 (2分24秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"580","","togotv.2012.015","","20120218","ArrayExpressを使い倒す2 Atlas of Gene Expressionを使って遺伝子発現状況を調べる 2012","ArrayExpressはEuropean Bioinformatics Institute (EBI)が提供・維持管理している遺伝子発現情報のデータベースです。ArrayExpressは、以前紹介したNCBI GEOと双璧をなすデータベースで、主にマイクロアレイ実験で得られたデータが2012年2月16日現在、27,765実験分(801,933個のアッセイ)蓄積されています。それらの中から、自分の興味のある発現データセットや遺伝子プロファイルを検索することができるだけでなく、それらの生データを自由にダウンロードすることが可能です。 今回は、Atlas of Gene Expressionを使って、様々な実験条件における興味のある遺伝子の発現状況の高低を、グラフや色の濃淡で表示することにより、分かりやすく閲覧できる方法を紹介しています。例として、筋分化決定因子である""myogenic differentiation 1(myod)""の遺伝子発現状況を検索しました。","遺伝子,発現解析,データベース,EBI","http://youtu.be/9-7w3KvTctA","http://togotv.dbcls.jp/movie/120218ArrayExpressAtlas.mov","http://doi.org/10.7875/togotv.2012.015","http://togotv.dbcls.jp/images/20120218_0.jpg","120218ArrayExpressAtlas.mov","thumbnail/20120218_0.jpg","1.遺伝子名で遺伝子発現を検索する (48秒)","2.特定の部位での遺伝子発現の詳細を見る (2分35秒)","3.部位を限定して遺伝子発現を調べる (2分56秒)","4.生物種ごとに調べた遺伝子の発現の詳細を見る(3分25秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"579","","togotv.2012.014","","20120217","ArrayExpressを使い倒す1 データの検索方法および生データのダウンロード方法 2012","ArrayExpressはEuropean Bioinformatics Institute (EBI)が提供・維持管理している遺伝子発現情報のデータベースです。ArrayExpressは、以前紹介したNCBI GEOと双璧をなすデータベースで、主にマイクロアレイ実験で得られたデータが2012年2月16日現在、27,765実験分(801,933のアッセイ)のデータが蓄積されています。それらの中から、自分の興味のある発現データセットや遺伝子プロファイルを検索することができるだけでなく、それらの生データを自由にダウンロードすることが可能です。ArrayExpressにあるデータがNCBI GEOにある場合、それらへのリンクが張られていることも一つの特徴です。今回は、まずArrayExpressの検索インターフェースを使って自分の興味のある主にマイクロアレイの実験データセットにたどり着く方法、およびその生データのダウンロード方法について説明しています。","遺伝子,発現解析,データベース,EBI","http://youtu.be/A_gOZ-HL6Bk","http://togotv.dbcls.jp/movie/120217ArrayExpress.mov","http://doi.org/10.7875/togotv.2012.014","http://togotv.dbcls.jp/images/20120217_0.jpg","120217ArrayExpress.mov","thumbnail/20120217_0.jpg","1. TOP画面での実験データの検索(51秒)","2. 条件の絞り込み(1分40秒)","3. 実験データの詳細とダウンロード(3分37秒)","4. ArrayExpress内のデータのみの検索・詳細な検索方法(4分40秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"578","","togotv.2012.013","","20120216","Human Protein reference databaseを使ってヒトタンパク質の情報を調べる","Human Protein Reference Databaseはヒトタンパク質について、ドメイン、翻訳後修飾、相互作用などの情報を統合したデータベースです。様々な条件設定を行うことで、目的のヒトタンパク質の情報を検索してくれます。 今回は、ヒトのkinesinファミリー因子を例に、HPRDを使ってタンパク質を検索する方法を3つ紹介します。","タンパク質,配列解析,データベース","http://youtu.be/zJO3ygVc38k","http://togotv.dbcls.jp/movie/120216HPRD.mov","http://doi.org/10.7875/togotv.2012.013","http://togotv.dbcls.jp/images/20120216_0.jpg","120216HPRD.mov","thumbnail/20120216_0.jpg","1.HPRDのトップページまで行く (28秒)","2.Queryを利用してタンパク質を検索する (2分12秒)","3.Browseを利用してタンパク質を検索する (6分24秒)","4.Blastを利用してタンパク質を検索する(7分43秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"577","","togotv.2012.012","","20120215","GGRNA: search engine for genes and transcripts","GGRNA is a 'Google-like' full text search engine for genes and transcripts. The web server accepts arbitrary words and phrases such as gene names, IDs, annotations, and even nucleotide/amino-acid sequences as an input, and quickly searches relevant RefSeq transcripts.","English,DBCLS,塩基配列,アミノ酸,配列解析","http://youtu.be/wdab9bKbFy8","http://togotv.dbcls.jp/movie/120215ggrna_English.mov","http://doi.org/10.7875/togotv.2012.012","http://togotv.dbcls.jp/images/20120215_0.jpg","120215ggrna_English.mov","thumbnail/20120215_0.jpg","1.Simple search (0’30”)","2.Search for a phrase (1’42”)","3.AND search (2’16”)","4.Using search operators (3’08”)","5.Advanced search (4’17”)","6.Example 1: search for PCR primer binding sites (5’04”)","7.Example 2: search for caspase cleavage sites (6’33”)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"576","","togotv.2012.011","","20120214","DBCLS Galaxy/TogoDBの使い方@AJACS本郷10","本日の統合TVは、2012年2月10日に開催された、統合データベース講演会: AJACS本郷10から、DBCLS 山口 敦子 による「DBCLS Galaxy/TogoDBの使い方」をお送りします。約6分です。","実習, AJACS,Galaxy,ウェブツール","http://youtu.be/J6RM3OqR1h4","http://togotv.dbcls.jp/movie/120214yamaguchi.mov","http://doi.org/10.7875/togotv.2012.011","http://togotv.dbcls.jp/images/20120214_0.jpg","120214yamaguchi.mov","thumbnail/20120214_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"575","","togotv.2012.010","","20120213","BodyParts3D/アナトモグラフィーの使い方@AJACS本郷10","本日の統合TVは、2012年2月10日に開催された、統合データベース講演会: AJACS本郷10から、DBCLS 藤枝 香 による「BodyParts3D/アナトモグラフィーの使い方」をお送りします。約48分です。","実習, AJACS","http://youtu.be/HlntzmKPZhU","http://togotv.dbcls.jp/movie/120213fujieda.mov","http://doi.org/10.7875/togotv.2012.010","http://togotv.dbcls.jp/images/20120213_0.jpg","120213fujieda.mov","thumbnail/20120213_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"574","","togotv.2012.009","","20120212","DBCLSの活動の紹介@AJACS本郷10","本日の統合TVは、2012年2月10日に開催された、統合データベース講演会: AJACS本郷10から、DBCLS 河野 信 による「DBCLSの活動の紹介」をお送りします。約54分です。","講演, AJACS,DBCLS","http://youtu.be/Hd_XiiisTkY","http://togotv.dbcls.jp/movie/120212kawano.mov","http://doi.org/10.7875/togotv.2012.009","http://togotv.dbcls.jp/images/20120212_0.jpg","120212kawano.mov","thumbnail/20120212_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"573","","togotv.2012.008","","20120211","NBDCの三大サービス(カタログ、横断検索、アーカイブ)の紹介@AJACS本郷10","本日の統合TVは、2012年2月10日に開催された、統合データベース講演会: AJACS本郷10から、NBDC 櫛田 達矢 による「NBDCの三大サービス(カタログ、横断検索、アーカイブ)の紹介」をお送りします。約62分です。","講演, AJACS,NBDC","http://youtu.be/hGqvd5HxxD8","http://togotv.dbcls.jp/movie/120211kushida.mov","http://doi.org/10.7875/togotv.2012.008","http://togotv.dbcls.jp/images/20120211_0.jpg","120211kushida.mov","thumbnail/20120211_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"572","","togotv.2012.007","","20120210","ライフサイエンスデータベース統合推進事業の取り組み@AJACS本郷10","本日の統合TVは、2012年2月10日に開催された、統合データベース講演会: AJACS本郷10から、NBDC 坂東 明日佳 による「ライフサイエンスデータベース統合推進事業の取り組み」をお送りします。約20分です。","講演, AJACS,NBDC","http://youtu.be/VJdQWVgYcMY","http://togotv.dbcls.jp/movie/120210bando.mov","http://doi.org/10.7875/togotv.2012.007","http://togotv.dbcls.jp/images/20120210_0.jpg","120210bando.mov","thumbnail/20120210_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"571","","togotv.2012.006","","20120202","Webにおける科学出版と“編集”","本日の統合TVは、2012年1月31日に行われた 横浜市立大学大学院 生命ナノシステム科学研究科生体超分子システム科学専攻 博士後期課程 における講義「科学メディア講究」から ライフサイエンス統合データベースセンター(DBCLS) 飯田 啓介 特任技術専門員(元 蛋白質 核酸 酵素(PNE)編集長、現 ライフサイエンス新着論文レビュー 編集人) による「Webにおける科学出版と“編集”」をお送りします。 約81分の内容です。","DBCLS,講演","http://youtu.be/GY5R5fM8e4g","http://togotv.dbcls.jp/movie/120202ksukeiida.mov","http://doi.org/10.7875/togotv.2012.006","http://togotv.dbcls.jp/images/20120202_0.jpg","120202ksukeiida.mov","thumbnail/20120202_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"570","","togotv.2012.005","","20120128","NCBI GEOの使い方3〜データセットブラウザの使い方1〜 2012","NCBI GEOはNCBIが提供・維持管理している遺伝子発現情報のデータベースです。今回はGEOの使い方第3弾として、データセットブラウザ(Dataset browser)を利用して、一つの実験データセットにおける様々な遺伝子発現を詳細に調べる方法を紹介しています。データセットの検索、データセット内の遺伝子の検索、及びヒートマップツールの使い方などについて説明しています。","発現解析,NCBI,遺伝子,データベース,GEO","http://youtu.be/cAKMMSsW1hk","http://togotv.dbcls.jp/movie/120128ncbigeo3.mov","http://doi.org/10.7875/togotv.2012.005","http://togotv.dbcls.jp/images/20120128_0.jpg","120128ncbigeo3.mov","thumbnail/20120128_0.jpg","1. データセット内の遺伝子検索(53秒)","2. ヒートマップツール 階層的クラスタリング(1分49秒)","3. 分割最適化法(5分38秒)","4. 染色体上の配置(7分10秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"569","","togotv.2012.004","","20120127","Biomart v0.8を使ってIDから遺伝子情報を取得する","BioMartは、the Ontario Institute forCancer Research (OiCR) とthe European Bioinformatics Institute (EBI) が共同で開発しているクエリ指向型データ管理システムです。 先日、BioMartのバージョンアップが行われインターフェースの大幅な変更や新機能の追加がなされました。 この動画ではバージョンアップで変更された点を、IDから遺伝子のDescription等を取得する中で解説し、また、追加された新機能についても解説を行なっていきます。","ゲノム,遺伝子,データベース","http://youtu.be/XlTjgWRJGxw","http://togotv.dbcls.jp/movie/120127biomart_v0.8.mov","http://doi.org/10.7875/togotv.2012.004","http://togotv.dbcls.jp/images/20120127_0.jpg","120127biomart_v0.8.mov","thumbnail/20120127_0.jpg","1.IDから遺伝子のDescriptionなどをとってくる (36秒)","2.Gene retrievalやsequence retrievalについて (3分47秒)","3.ID converterについて(4分23秒)","4.Identifier searchについて (5分09秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"568","","togotv.2012.003","","20120124","GGRNAで遺伝子をGoogleのように検索する","GGRNAは統合ホームページで提供されているツールの一つで様々なキーワードから素早く遺伝子を検索できるサービスです。NCBI RefSeqの転写産物を生物種ごとに検索できます。遺伝子名、各種ID、アノテーション情報だけでなく塩基配列やアミノ酸配列からも高速に検索できます。今回は、その基本的な検索、操作方法について説明します。","DBCLS,遺伝子,塩基配列,ウェブツール,アミノ酸,配列解析","http://youtu.be/E-k114Gts0c","http://togotv.dbcls.jp/movie/120124ggrna.mov","http://doi.org/10.7875/togotv.2012.003","http://togotv.dbcls.jp/images/20120124_0.jpg","120124ggrna.mov","thumbnail/20120124_0.jpg","1.フリーワード検索 (30秒)","2.フレーズ検索 (1分44秒)","3.AND検索 (2分24秒)","4.検索タグを使って検索 (3分10秒)","5.Advanced searchで検索 (4分13秒)","6.PCRのプライマーを検索 (5分4秒)","7.caspaseによる切断部位の検索 (6分26秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"567","","togotv.2012.002","","20120120","第3回LinkedData勉強会:メタゲノムのメタデータ","本日の統合TVは、2012年1月18日に開催された第3回LinkedData勉強会から、ライフサイエンス統合データベースセンター岡本忍 特任准教授による「メタゲノムのメタデータ」をお送りします。","講演,DBCLS,ゲノム,メタゲノム","http://youtu.be/mteeaE-x6tE","http://togotv.dbcls.jp/movie/120120LOD3_so.mov","http://doi.org/10.7875/togotv.2012.002","http://togotv.dbcls.jp/images/20120120_0.jpg","120120LOD3_so.mov","thumbnail/20120120_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"566","","togotv.2012.001","","20120119","バイオインフォマティクス三題噺:フロンティア開拓、インフラ整備、人材育成 ーBIRDからNBDCへー","本日の統合TVは、2011年11月14日に日本科学未来館 みらいCANホールにて開催されたバイオインフォマティクス推進センター(BIRD)第8回研究成果報告会「知識発見への挑戦〜バイオインフォマティクスの飛躍に向けて〜」から JSTバイオサイエンスデータベースセンター 副センター長 高木 利久 先生 による「バイオインフォマティクス三題噺:フロンティア開拓、インフラ整備、人材育成 ーBIRDからNBDCへー」をお送りします。","講演,NBDC","http://youtu.be/71bQoy4cYBY","http://togotv.dbcls.jp/movie/120119BIRD8_takagi.mov","http://doi.org/10.7875/togotv.2012.001","http://togotv.dbcls.jp/images/20120119_0.jpg","120119BIRD8_takagi.mov","thumbnail/20120119_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"565","","togotv.2012.000","","20120118","BIRDで感じた「創造」とは何か","本日の統合TVは、2011年11月14日に日本科学未来館 みらいCANホールにて開催されたバイオインフォマティクス推進センター(BIRD)第8回研究成果報告会「知識発見への挑戦〜バイオインフォマティクスの飛躍に向けて〜」から JSTバイオインフォマティクス推進センター 統括 勝木 元也 先生 による「開会挨拶と私見:BIRDで感じた「創造」とは何か」をお送りします。","講演","http://youtu.be/GBZZAYuKz-M","http://togotv.dbcls.jp/movie/120118BIRD8_katsuki.mov","http://doi.org/10.7875/togotv.2012.000","http://togotv.dbcls.jp/images/20120118_0.jpg","120118BIRD8_katsuki.mov","thumbnail/20120118_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"564","","togotv.2012.001","","20120116","UCSC Genome Browserの使い方〜wig形式のファイルをトラックとして追加する〜","UCSC Genome Browserは、 米国カリフォルニア大学サンタクルーズ校(UCSC)が開発、維持しているゲノムブラウザ、ゲノムアノテーション閲覧システムです。ゲノムブラウザとはアノテーションが付加された遺伝子のゲノム上の位置やその周辺を表示するツールのことです。今回は、GC率やChIP-Seqのデータなどを表示するためによく使用されるwig形式のファイルをUCSC Genome Browserにアップロードし閲覧する方法を紹介します。","可視化,発現解析,UCSC,遺伝子,ゲノム,ChIP-seq","http://youtu.be/StO0ZcfEeeo","http://togotv.dbcls.jp/movie/120116UCSCWIG.mov","http://doi.org/10.7875/togotv.2012.001","http://togotv.dbcls.jp/images/20120116_0.jpg","120116UCSCWIG.mov","thumbnail/20120116_0.jpg","1.wig形式の説明 (12秒)","2.Web上のwig形式のファイルを表示する (36秒)","3.手元のコンピュータに保存したwig形式のファイルを表示する (2分6秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"563","","togotv.2011.157","","20111223","BodyParts3D/Anatomographyの使い方〜実践編〜 人体ヒートマップの作成","BodyParts3D(ボディパーツ3D)は統合ホームページで提供されているツールの一つで人体各部位の位置や形状を3次元モデルで記述したデータベースです。Anatomography(アナトモグラフィー)を使って、BodyParts3Dから解剖学用語を選択して自由に人体のモデル図を作成できます。また、器官別の発現解析データ、疾患別症状分布などの手持ちのデータを人体の3D画像にマッピングして俯瞰することもできます。3Dの人体地図にデータをマップすることで、""体に関する情報""どうしの関係を視覚的・直感的に理解したい場面で真価を発揮します。基本編の動画ではBodyParts3D/Anatomographyの基本的な使い方を説明しました。BodyParts3D/Antomographyでは、臓器別に取得された数値データ(例えば遺伝子発現量)を色情報に変換し、人体ヒートマップを作成できます。 今回は、その方法を紹介します。","DBCLS,可視化","http://youtu.be/0HLy0OX9A2U","http://togotv.dbcls.jp/movie/111223bp3d_4_new.mov","http://doi.org/10.7875/togotv.2011.157","http://togotv.dbcls.jp/images/20111223_0.jpg","111223bp3d_4_new.mov","thumbnail/20111223_0.jpg","1.ケース1:5つの内蔵を発現量で色分けする。(15秒)","2.ケース2:脳の31の部位を遺伝子の発現量で色分けする。(3分11秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"562","","togotv.2011.156","","20111222","いつも側にいるコラボレータ 〜Google+を使った共同研究の進め方〜","本日の統合TVは、2011年12月13〜16日にパシフィコ横浜にて開催された、第34回日本分子生物学会年会のフォーラム 『もし分子生物学者がGoogle+の招待を受けたら』から、二階堂 愛さん (@dritoshi)(理化学研究所
発生・再生科学総合研究センター)による「いつも側にいるコラボレータ 〜Google+を使った共同研究の進め方〜」をお送りします。","講演,ウェブツール,Google","http://youtu.be/05Cp4mztVus","http://togotv.dbcls.jp/movie/111222MBSJ2011_dritoshi.mov","http://doi.org/10.7875/togotv.2011.156","http://togotv.dbcls.jp/images/20111222_0.jpg","111222MBSJ2011_dritoshi.mov","thumbnail/20111222_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"561","","togotv.2011.155","","20111221","生存戦略、しましょうか 〜或いは、最もスマートな研究職の探し方〜","本日の統合TVは、2011年12月13〜16日にパシフィコ横浜にて開催された、第34回日本分子生物学会年会のフォーラム 『もし分子生物学者がGoogle+の招待を受けたら』から、大田 達郎さん (@iNut)(ライフサイエンス統合データベースセンター)による「生存戦略、しましょうか 〜或いは、最もスマートな研究職の探し方〜」をお送りします。","講演,ウェブツール","http://youtu.be/8drWDLcc3xc","http://togotv.dbcls.jp/movie/111221MBSJ2011_iNut.mov","http://doi.org/10.7875/togotv.2011.155","http://togotv.dbcls.jp/images/20111221_0.jpg","111221MBSJ2011_iNut.mov","thumbnail/20111221_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"560","","togotv.2011.154","","20111220","学生と研究者のあいだ 〜twitterで講演依頼をする方法〜","本日の統合TVは、2011年12月13〜16日にパシフィコ横浜にて開催された、第34回日本分子生物学会年会のフォーラム 『もし分子生物学者がGoogle+の招待を受けたら』から、安西 高廣さん (@takanzai)(名古屋大学大学院理学研究科物質理学専攻)による「学生と研究者のあいだ 〜twitterで講演依頼をする方法〜」をお送りします。","講演,ウェブツール","http://youtu.be/4Fl4Vj5Y0Nc","http://togotv.dbcls.jp/movie/111220MBSJ2011_takanzai.mov","http://doi.org/10.7875/togotv.2011.154","http://togotv.dbcls.jp/images/20111220_0.jpg","111220MBSJ2011_takanzai.mov","thumbnail/20111220_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"559","","togotv.2011.153","","20111219","BodyParts3D/Anatomographyの使い方〜実践編〜 3D画像の作成","BodyParts3D(ボディパーツ3D)は統合ホームページで提供されているツールの一つで人体各部位の位置や形状を3次元モデルで記述したデータベースです。Anatomography(アナトモグラフィー)を使って、BodyParts3Dから解剖学用語を選択して自由に人体のモデル図を作成できます。また、器官別の発現解析データ、疾患別症状分布などの手持ちのデータを人体の3D画像にマッピングして俯瞰することもできます。3Dの人体地図にデータをマップすることで、""体に関する情報""どうしの関係を視覚的・直感的に理解したい場面で真価を発揮します。基本編の動画ではBodyParts3D/Anatomographyの基本的な使い方を説明しました。BodyParts3D/Anatomographyは臓器の色や透明度を変えたり、見る角度を変えたりできるので、臓器の3D画像を描くのに使うことができます。今回はそのための実例を説明します。","DBCLS,可視化","http://youtu.be/yvCS4_vqt88","http://togotv.dbcls.jp/movie/111219bp3d_3.mov","http://doi.org/10.7875/togotv.2011.153","http://togotv.dbcls.jp/images/20111219_0.jpg","111219bp3d_3.mov","thumbnail/20111219_0.jpg","1.画像の作成 (23秒)","2.画像の保存 (2分44秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"558","","togotv.2011.152","","20111218","BodyParts3D/Anatomographyの使い方〜実践編〜 臓器の位置関係を調べる","BodyParts3D(ボディパーツ3D)は統合ホームページで提供されているツールの一つで人体各部位の位置や形状を3次元モデルで記述したデータベースです。Anatomography(アナトモグラフィー)を使って、BodyParts3Dから解剖学用語を選択して自由に人体のモデル図を作成できます。また、器官別の発現解析データ、疾患別症状分布などの手持ちのデータを人体の3D画像にマッピングして俯瞰することもできます。3Dの人体地図にデータをマップすることで、""体に関する情報""どうしの関係を視覚的・直感的に理解したい場面で真価を発揮します。基本編の動画ではBodyParts3D/Anatomographyの基本的な使い方を説明しました。BodyParts3D/Anatomographyは臓器を様々な角度から見たり、臓器の検索をしたり、大きさや位置関係を確認したりできます。今回はそのための実例を説明します。","DBCLS,可視化","http://youtu.be/OPsgD0WkI_k","http://togotv.dbcls.jp/movie/111218bp3d_2.mov","http://doi.org/10.7875/togotv.2011.152","http://togotv.dbcls.jp/images/20111218_0.jpg","111218bp3d_2.mov","thumbnail/20111218_0.jpg","1.膵臓の位置を調べる。 (15秒)","2.鎖骨の位置と形を調べる。 (2分34秒)","3.肺と心臓の位置関係を調べる。 (4分43秒)","4.腎臓と肝臓の位置関係を調べる。 (5分41秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"557","","togotv.2011.151","","20111217","BioPortalとProtegeを利用した生命科学オントロジーの作成","本日の統合TVは2011年12月6日にライフサイエンス統合データベースセンターにて行われたオントロジー作成の講習会をお送りします。 RDFとオントロジーについての説明の後、NBDC生命科学系データベースアーカイブに収録されている酵母タンパク質の相互作用データベース(Yeast Interacting Proteins Database)を使って簡単なオントロジーを作成する実演が行われています。今回の講習では、生命科学オントロジーのレポジトリであるNCBOBioPortalとDBCLSで開発しているオントロジー検索ツールOntoFinder、オントロジー編集ツールのProtégé 3.4.7 (最新版はBioPortalに対応していないそうです。(2011年12月7日現在))などが使われています。講師はライフサイエンス統合データベースセンター・特任准教授 金進東です。","DBCLS,講演,RDF","http://youtu.be/ZlQmXN0ZQLw","http://togotv.dbcls.jp/movie/111217Kim_BioPortal.mov","http://doi.org/10.7875/togotv.2011.151","http://togotv.dbcls.jp/images/20111217_0.jpg","111217Kim_BioPortal.mov","thumbnail/20111217_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"556","","togotv.2011.150","","20111216","NetStartを使って開始コドンを予測する","NetStartは塩基配列上の開始コドンを予測するツールです。 遺伝子をコードしている領域が分からない塩基配列を入力することで、開始コドン(ATG又はAUG)を予測してくれます。 今回は、ヒトのCDK8の配列を利用し、開始コドンを予測するまでの手順を紹介しています。","塩基配列,配列解析,ウェブツール,遺伝子","http://youtu.be/_7bQts3QhnA","http://togotv.dbcls.jp/movie/111216NetStart.mov","http://doi.org/10.7875/togotv.2011.150","http://togotv.dbcls.jp/images/20111216_0.jpg","111216NetStart.mov","thumbnail/20111216_0.jpg","1.NetStartのトップページまで行く (27秒)","2.開始コドンの予測を行う (99秒)","3.予測結果の解釈をする (132秒)","4.予測結果と実際の塩基配列の結果の相同性を確認する(236秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"555","","togotv.2011.149","","20111215","ゲノムメチル化とエピジェネティクスIII: DNA Communications by Type III Restriction Enzymes:
1D looping or 3D looping or Both?","本日の統合TVは、2011年度夏学期(4〜7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義IIから、Department of Biochemistry, Indian Institute of Science の Prof. Desirazu Narasimha Rao による「ゲノムメチル化とエピジェネティクスIII: DNA Communications by Type III Restriction Enzymes: 1D looping or 3D looping or Both?」をお送りします。","講演,English","http://youtu.be/KrySOWNW40c","http://togotv.dbcls.jp/movie/111215GCOE2_rao3.mov","http://doi.org/10.7875/togotv.2011.149","http://togotv.dbcls.jp/images/20111215_0.jpg","111215GCOE2_rao3.mov","thumbnail/20111215_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"554","","togotv.2011.148","","20111214","ゲノムメチル化とエピジェネティクスII: Helicobacter pylori","本日の統合TVは、2011年度夏学期(4〜7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義IIから、Department of Biochemistry, Indian Institute of Science の Prof. Desirazu Narasimha Rao による「ゲノムメチル化とエピジェネティクスII: Helicobacter pylori」をお送りします。","講演,English","http://youtu.be/sYUpnomRxuA","http://togotv.dbcls.jp/movie/111214GCOE2_rao2.mov","http://doi.org/10.7875/togotv.2011.148","http://togotv.dbcls.jp/images/20111214_0.jpg","111214GCOE2_rao2.mov","thumbnail/20111214_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"553","","togotv.2011.147","","20111213","ゲノムメチル化とエピジェネティクスI: Unity in Diversity - A Curious Case of DNA
Methyltransferases","本日の統合TVは、2011年度夏学期(4〜7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義IIから、Department of Biochemistry, Indian Institute of Science の Prof. Desirazu Narasimha Rao による「ゲノムメチル化とエピジェネティクスI: Unity in Diversity - A Curious Case of DNA Methyltransferases」をお送りします。","講演,English","http://youtu.be/Q_AsKITnSy0","http://togotv.dbcls.jp/movie/111213GCOE2_rao1.mov","http://doi.org/10.7875/togotv.2011.147","http://togotv.dbcls.jp/images/20111213_0.jpg","111213GCOE2_rao1.mov","thumbnail/20111213_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"552","","togotv.2011.146","","20111212","トーゴーの日シンポジウム2011 〜「閉会の挨拶・まとめ」〜","本日の統合TVは、2011年10月5日に日本科学未来館 みらいCANホールにて開催された日本のライフサイエンス分野におけるデータベース統合の成果を報告するシンポジウム「トーゴーの日シンポジウム2011 〜ライフサイエンス分野のデータベース統合の“カタチ”を探る〜」から、 バイオサイエンスデータベースセンター 副センター長 高木 利久 による「閉会の挨拶・まとめ」をお送りします。","DBCLS,講演,トーゴーの日","http://youtu.be/cLXKxCIvrFA","http://togotv.dbcls.jp/movie/111212_togo_takagi.mov","http://doi.org/10.7875/togotv.2011.146","http://togotv.dbcls.jp/images/20111212_0.jpg","111212_togo_takagi.mov","thumbnail/20111212_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"551","","togotv.2011.145","","20111211","トーゴーの日シンポジウム2011 〜「ゲノム情報に基づく植物データベースの統合」〜","本日の統合TVは、2011年10月5日に日本科学未来館 みらいCANホールにて開催された日本のライフサイエンス分野におけるデータベース統合の成果を報告するシンポジウム「トーゴーの日シンポジウム2011 〜ライフサイエンス分野のデータベース統合の“カタチ”を探る〜」から、 かずさDNA研究所 副所長 田畑 哲之 先生による「ゲノム情報に基づく植物データベースの統合」をお送りします。","DBCLS,講演,トーゴーの日,ゲノム,植物,データベース","http://youtu.be/vFHR7KxW1EM","http://togotv.dbcls.jp/movie/111211_togo_tabata.mov","http://doi.org/10.7875/togotv.2011.145","http://togotv.dbcls.jp/images/20111211_0.jpg","111211_togo_tabata.mov","thumbnail/20111211_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"550","","togotv.2011.144","","20111210","トーゴーの日シンポジウム2011 〜「微生物エンサイクロペディアの構築に向けて」 〜","本日の統合TVは、2011年10月5日に日本科学未来館 みらいCANホールにて開催された日本のライフサイエンス分野におけるデータベース統合の成果を報告するシンポジウム「トーゴーの日シンポジウム2011 〜ライフサイエンス分野のデータベース統合の“カタチ”を探る〜」から、 東京工業大学 大学院生命理工学研究科 教授 黒川 顕 先生による「微生物エンサイクロペディアの構築に向けて」 をお送りします。","DBCLS,講演,トーゴーの日,微生物","http://youtu.be/mYzv78Ljgdw","http://togotv.dbcls.jp/movie/111210_togo_kurokawa.mov","http://doi.org/10.7875/togotv.2011.144","http://togotv.dbcls.jp/images/20111210_0.jpg","111210_togo_kurokawa.mov","thumbnail/20111210_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"549","","togotv.2011.143","","20111209","トーゴーの日シンポジウム2011 〜「大規模ゲノム疫学研究の統合情報基盤の構築」 〜","本日の統合TVは、2011年10月5日に日本科学未来館 みらいCANホールにて開催された日本のライフサイエンス分野におけるデータベース統合の成果を報告するシンポジウム「トーゴーの日シンポジウム2011 〜ライフサイエンス分野のデータベース統合の“カタチ”を探る〜」から、 から 京都大学 大学院医学研究科 教授 松田 文彦 先生による「大規模ゲノム疫学研究の統合情報基盤の構築」 をお送りします。","DBCLS,講演,トーゴーの日,ゲノム","http://youtu.be/XVIcoY814To","http://togotv.dbcls.jp/movie/111209_togo_matsuda.mov","http://doi.org/10.7875/togotv.2011.143","http://togotv.dbcls.jp/images/20111209_0.jpg","111209_togo_matsuda.mov","thumbnail/20111209_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"548","","togotv.2011.142","","20111208","トーゴーの日シンポジウム2011 〜「ヒトゲノムバリエーションデータベースの開発」 〜","本日の統合TVは、2011年10月5日に日本科学未来館 みらいCANホールにて開催された日本のライフサイエンス分野におけるデータベース統合の成果を報告するシンポジウム「トーゴーの日シンポジウム2011 〜ライフサイエンス分野のデータベース統合の“カタチ”を探る〜」から、 東京大学 大学院医学系研究科 教授 徳永 勝士 先生 による「ヒトゲノムバリエーションデータベースの開発」 をお送りします。","DBCLS,講演,トーゴーの日,多型,データベース","http://youtu.be/1sdyKQXq_mc","http://togotv.dbcls.jp/movie/111208_togo_tokunaga.mov","http://doi.org/10.7875/togotv.2011.142","http://togotv.dbcls.jp/images/20111208_0.jpg","111208_togo_tokunaga.mov","thumbnail/20111208_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"547","","togotv.2011.141","","20111207","トーゴーの日シンポジウム2011 〜共催講演 「『画期的な農畜産物作出のためのゲノム情報データベース』の試み」〜","本日の統合TVは、2011年10月5日に日本科学未来館 みらいCANホールにて開催された日本のライフサイエンス分野におけるデータベース統合の成果を報告するシンポジウム「トーゴーの日シンポジウム2011 〜ライフサイエンス分野のデータベース統合の“カタチ”を探る〜」から、 農業生物資源研究所 農業生物先端ゲノム研究センター ゲノムインフォマティクスユニット ユニット長 伊藤 剛 先生 による共催講演 「『画期的な農畜産物作出のためのゲノム情報データベース』の試み」 をお送りします。","DBCLS,講演,トーゴーの日,ゲノム,データベース","http://youtu.be/D4XtxLtP-JM","http://togotv.dbcls.jp/movie/111207_togo_ito.mov","http://doi.org/10.7875/togotv.2011.141","http://togotv.dbcls.jp/images/20111207_0.jpg","111207_togo_ito.mov","thumbnail/20111207_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"546","","togotv.2011.140","","20111206","トーゴーの日シンポジウム2011 〜「4省連携の活動紹介」〜","本日の統合TVは、2011年10月5日に日本科学未来館 みらいCANホールにて開催された日本のライフサイエンス分野におけるデータベース統合の成果を報告するシンポジウム「トーゴーの日シンポジウム2011 〜ライフサイエンス分野のデータベース統合の“カタチ”を探る〜」から、 バイオサイエンスデータベースセンター 副センター長 高木 利久 による「4省連携の活動紹介」 をお送りします。","DBCLS,講演,トーゴーの日","http://youtu.be/VQCMID9vLHU","http://togotv.dbcls.jp/movie/111206_togo_takagi.mov","http://doi.org/10.7875/togotv.2011.140","http://togotv.dbcls.jp/images/20111206_0.jpg","111206_togo_takagi.mov","thumbnail/20111206_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"545","","togotv.2011.139","","20111205","トーゴーの日シンポジウム2011 〜基調講演2 「地球観測・予測データの統融合」〜","本日の統合TVは、2011年10月5日に日本科学未来館 みらいCANホールにて開催された日本のライフサイエンス分野におけるデータベース統合の成果を報告するシンポジウム「トーゴーの日シンポジウム2011 〜ライフサイエンス分野のデータベース統合の“カタチ”を探る〜」から、 東京大学大学院工学系研究科/東京大学地球観測データ統融合連携研究機構 教授 小池 俊雄 先生 による基調講演2 「地球観測・予測データの統融合」 をお送りします。","DBCLS,講演,トーゴーの日","http://youtu.be/4rx1XC7ZWA0","http://togotv.dbcls.jp/movie/111205_togo_koike.mov","http://doi.org/10.7875/togotv.2011.139","http://togotv.dbcls.jp/images/20111205_0.jpg","111205_togo_koike.mov","thumbnail/20111205_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"544","","togotv.2011.138","","20111204","トーゴーの日シンポジウム2011 〜基調講演① 「Linked Open Data で広がるデータ統合」〜","本日の統合TVは、2011年10月5日に日本科学未来館 みらいCANホールにて開催された日本のライフサイエンス分野におけるデータベース統合の成果を報告するシンポジウム「トーゴーの日シンポジウム2011 〜ライフサイエンス分野のデータベース統合の“カタチ”を探る〜」から、 慶応義塾大学 環境情報学部 教授 萩野 達也 先生 による基調講演①
「Linked Open Data で広がるデータ統合」 をお送りします。","DBCLS,講演,トーゴーの日","http://youtu.be/TyLaIZNDHfk","http://togotv.dbcls.jp/movie/111204_togo_hagino.mov","http://doi.org/10.7875/togotv.2011.138","http://togotv.dbcls.jp/images/20111204_0.jpg","111204_togo_hagino.mov","thumbnail/20111204_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"543","","togotv.2011.137","","20111203","トーゴーの日シンポジウム2011 〜「データベース統合に関わる基盤技術開発」〜","本日の統合TVは、2011年10月5日に日本科学未来館 みらいCANホールにて開催された日本のライフサイエンス分野におけるデータベース統合の成果を報告するシンポジウム「トーゴーの日シンポジウム2011 〜ライフサイエンス分野のデータベース統合の“カタチ”を探る〜」から、 ライフサイエンス統合データベースセンター 特任准教授 坊農 秀雅
による「データベース統合に関わる基盤技術開発」をお送りします。","DBCLS,講演,トーゴーの日,データベース","http://youtu.be/ZcmGhMJKKt4","http://togotv.dbcls.jp/movie/111203_togo_bono.mov","http://doi.org/10.7875/togotv.2011.137","http://togotv.dbcls.jp/images/20111203_0.jpg","111203_togo_bono.mov","thumbnail/20111203_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"542","","togotv.2011.136","","20111202","トーゴーの日シンポジウム2011 〜来賓の挨拶〜","本日の統合TVは、2011年10月5日に日本科学未来館 みらいCANホールにて開催された日本のライフサイエンス分野におけるデータベース統合の成果を報告するシンポジウム「トーゴーの日シンポジウム2011 〜ライフサイエンス分野のデータベース統合の“カタチ”を探る〜」から、 内閣府総合科学技術会議 議員 本庶 佑 先生 による「来賓の挨拶」をお送りします。","DBCLS,講演,トーゴーの日","http://youtu.be/f8aBdEpRtfM","http://togotv.dbcls.jp/movie/111202_togo_honjyo.mov","http://doi.org/10.7875/togotv.2011.136","http://togotv.dbcls.jp/images/20111202_0.jpg","111202_togo_honjyo.mov","thumbnail/20111202_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"541","","togotv.2011.135","","20111201","トーゴーの日シンポジウム2011 〜開会の挨拶〜","本日の統合TVは、2011年10月5日に日本科学未来館 みらいCANホールにて開催された日本のライフサイエンス分野におけるデータベース統合の成果を報告するシンポジウム「トーゴーの日シンポジウム2011 〜ライフサイエンス分野のデータベース統合の“カタチ”を探る〜」から、 から 科学技術振興機構 川上 伸昭 総括担当理事 による「開会の挨拶」をお送りします。","DBCLS,講演,トーゴーの日","http://youtu.be/Zo27exdqEeE","http://togotv.dbcls.jp/movie/111201_togo_kawakami.mov","http://doi.org/10.7875/togotv.2011.135","http://togotv.dbcls.jp/images/20111201_0.jpg","111201_togo_kawakami.mov","thumbnail/20111201_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"540","","togotv.2011.134","","20111130","BodyParts3D/Anatomographyの使い方〜基本編〜","BodyParts3D(ボディパーツ3D)は統合ホームページで提供されているツールの一つで人体各部位の位置や形状を3次元モデルで記述したデータベースです。Anatomography(アナトモグラフィー)を使って、BodyParts3Dから解剖学用語を選択して自由に人体のモデル図を作成できます。また、器官別の発現解析データ、疾患別症状分布などの手持ちのデータを人体の3D画像にマッピングして俯瞰することもできます。3Dの人体地図にデータをマップすることで、""体に関する情報""どうしの関係を視覚的・直感的に理解したい場面で真価を発揮します。 いまなお現在進行形でその改良が進められており、内容の充実とともに使いやすさも日々向上しています。今回は2011年に行われたインターフェイスの変更に伴い、更新されたAnatomographyの操作方法を中心に紹介しています。","DBCLS,可視化","http://youtu.be/gWePV2Eqxbg","http://togotv.dbcls.jp/movie/111130bp3d.mov","http://doi.org/10.7875/togotv.2011.134","http://togotv.dbcls.jp/images/20111130_0.jpg","111130bp3d.mov","thumbnail/20111130_0.jpg","1.画像の作成 (35秒)","2.作成した画像の回転、拡大・縮小、視点移動 (1分48秒)","3.画像をクリックして臓器を選択し、操作する。 (4分2秒)","4.作成した画像を保存・共有(パーマリンク取得、印刷、メールで送信)する。 (7分46秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"539","","togotv.2011.133","","20111124","Avadis NGS の使い方〜RNA-seq編〜","今回の統合TVでは Avadis NGS による RNA-seq 解析の方法を解説します。 Avadis NGS は次世代シーケンサ(以下 NGS)から得られたデータの解析のための商用ソフトウェアです(無料で20日間試用できます)。Strand Scientific Intelligence 社が開発、日本では Agilent 社が販売しています。 Avadis NGS ではマッピングされたショートリードのデータ(SAM や BAM フォーマット)を読み込み、クオリティ・チェックを施した上で各種の解析およびその可視化を行う、という一連の流れを一つのソフトだけで行うことができます。","NGS,パスウェイ解析,多型,発現解析,ソフトウェア,RNA-seq","http://youtu.be/V-FDYqo-xa0","http://togotv.dbcls.jp/movie/111124Avadis_RNA_seq.mov","http://doi.org/10.7875/togotv.2011.133","http://togotv.dbcls.jp/images/20111124_0.jpg","111124Avadis_RNA_seq.mov","thumbnail/20111124_0.jpg","1.プロジェクトの作成 (0分15秒)","2.Interpretation の作成 (1分50秒)","3.クオリティチェック (3分20秒)","4.フィルタリング (3分56秒)","5.定量化 (4分52秒)","6.Fold Change 解析 (6分43秒)","7.GO 解析 (7分57秒)","8.パスウェイ解析 (8分43秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"538","","togotv.2011.132","","20111107","統計解析ソフト「R」での立廻り","Rはフリーでオープンソースの統計解析環境です。Rを使うとデータの操作や計算、可視化を統合して行うことができます。豊富に用意されたサンプルデータや、対話的な解析、網羅的なパッケージアーカイブCRANが特徴です。Windows, MacOSX, Linux とマルチプラットホームで利用可能です。生命科学分野のためのRパッケージプロジェクトである『BioConductor』では、500以上のパッケージが配布されており、マイクロアレイデータなどの遺伝子発現プロファイルや質量分析データ、タンパク質相互作用データなどを解析するうえで、欠かせないものとなりつつあります。今回はRを使う上で基本的な知識や、便利なウェブサイトを紹介します。また、実際にHuman Induced Pluripotent Stem Cell Epigenomesのデータを階層的クラスタリングを用いて解析します。この解析はHotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cellsのFigure 1eを元ネタにしています。","可視化,R,プログラミング,発現解析,Bioconductor","http://youtu.be/QivkpL0susI","http://togotv.dbcls.jp/movie/111107RClustering.mov","http://doi.org/10.7875/togotv.2011.132","http://togotv.dbcls.jp/images/20111107_0.jpg","111107RClustering.mov","thumbnail/20111107_0.jpg","1.パッケージ・関数の調べ方 (11秒)","2.便利なウェブサイト (1分48秒)","3.今回のクラスタ解析の概要 (2分43秒)","4.データの読み込み (3分39秒)","5.データの選択・集約 (4分09秒)","6.相関係数を距離として階層的クラスタリングを行う (5分45秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"537","","togotv.2011.131","","20111106","バイオインフォマティクスにより見えてくる環境微生物生態系III:高速解析技術により開かれる視界","本日の統合TVは、2011年度夏学期(4〜7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義IIから、東京大学大学院新領域創成科学研究科社会文化環境学専攻 佐藤弘泰 先生による「バイオインフォマティクスにより見えてくる環境微生物生態系III:高速解析技術により開かれる視界」をお送りします。","講演,微生物","http://youtu.be/Ha32ovcselg","http://togotv.dbcls.jp/movie/111106GCOE_sato3.mov","http://doi.org/10.7875/togotv.2011.131","http://togotv.dbcls.jp/images/20111106_0.jpg","111106GCOE_sato3.mov","thumbnail/20111106_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"536","","togotv.2011.130","","20111105","バイオインフォマティクスにより見えてくる環境微生物生態系II:下水処理微生物群集構造解析手法","本日の統合TVは、2011年度夏学期(4~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義IIから、東京大学大学院新領域創成科学研究科社会文化環境学専攻 佐藤弘泰 先生による「バイオインフォマティクスにより見えてくる環境微生物生態系II:下水処理微生物群集構造解析手法」をお送りします。","講演,微生物","http://youtu.be/UeO3DEjJhx0","http://togotv.dbcls.jp/movie/111105GCOE_sato2.mov","http://doi.org/10.7875/togotv.2011.130","http://togotv.dbcls.jp/images/20111105_0.jpg","111105GCOE_sato2.mov","thumbnail/20111105_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"535","","togotv.2011.129","","20111104","バイオインフォマティクスにより見えてくる環境微生物生態系I:下水処理の仕組みと微生物の機能","本日の統合TVは、2011年度夏学期(4〜7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義IIから、東京大学大学院新領域創成科学研究科社会文化環境学専攻 佐藤弘泰 先生による「バイオインフォマティクスにより見えてくる環境微生物生態系I:下水処理の仕組みと微生物の機能」をお送りします。","講演,微生物","http://youtu.be/zLi1seIcBck","http://togotv.dbcls.jp/movie/111104GCOE_sato1.mov","http://doi.org/10.7875/togotv.2011.129","http://togotv.dbcls.jp/images/20111104_0.jpg","111104GCOE_sato1.mov","thumbnail/20111104_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"534","","togotv.2011.128","","20111103","ゲノムの多重遺伝子群による多様情報の識別と行動制御:匂いとフェロモンII","本日の統合TVは、2011年度夏学期(4〜7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義IIから、東京大学大学院農学生命科学研究科応用生命化学専攻生物化学研究室 東原和成 先生による「ゲノムの多重遺伝子群による多様情報の識別と行動制御:匂いとフェロモンII」をお送りします。","講演,ゲノム,遺伝子","http://youtu.be/M9AKgO9w99I","http://togotv.dbcls.jp/movie/111103GCOE_touhara2.mov","http://doi.org/10.7875/togotv.2011.128","http://togotv.dbcls.jp/images/20111103_0.jpg","111103GCOE_touhara2.mov","thumbnail/20111103_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"533","","togotv.2011.127","","20111102","ゲノムの多重遺伝子群による多様情報の識別と行動制御:匂いとフェロモンI","本日の統合TVは、2011年度夏学期(4〜7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義IIから、東京大学大学院農学生命科学研究科応用生命化学専攻生物化学研究室 東原和成 先生による「ゲノムの多重遺伝子群による多様情報の識別と行動制御:匂いとフェロモンI」をお送りします。","講演,ゲノム,遺伝子","http://youtu.be/8ETavKIjE5U","http://togotv.dbcls.jp/movie/111102GCOE_touhara1.mov","http://doi.org/10.7875/togotv.2011.127","http://togotv.dbcls.jp/images/20111102_0.jpg","111102GCOE_touhara1.mov","thumbnail/20111102_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"532","","togotv.2011.126","","20111101","文献情報関連サービスの活用法@AJACS本郷9","本日の統合TVは、2011年7月15日に開催された、統合データベース講演会: AJACS本郷9から、DBCLS 山本 泰智 による「文献情報関連サービスの活用法」をお送りします。","実習, AJACS,文献検索","http://youtu.be/2znfVceOkCg","http://togotv.dbcls.jp/movie/111101AJACS27yamamoto.mov","http://doi.org/10.7875/togotv.2011.126","http://togotv.dbcls.jp/images/20111101_0.jpg","111101AJACS27yamamoto.mov","thumbnail/20111101_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"531","","togotv.2011.125","","20111028","Gene Ontologyを使って特定遺伝子の機能情報を検索する 2011","Gene Ontologyとは、遺伝子の機能の記述に関して、生物学分野における共通語彙の作成を目指した用例辞書の一つです。Gene Ontologyの特徴として、定義された用語はBiological process(生物学的プロセス)cellular component(細胞の構成要素)molecular function(分子機能)の3つのカテゴリーに分類されます。そして、個々の用語はDAG(無閉路有向グラフ)という階層構造として意味的な包含関係を表す形で関連づけられています。","遺伝子,発現解析,データベース","http://youtu.be/Xa1jDbxs3Ow","http://togotv.dbcls.jp/movie/111028geneontology.mov","http://doi.org/10.7875/togotv.2011.125","http://togotv.dbcls.jp/images/20111028_0.jpg","111028geneontology.mov","thumbnail/20111028_0.jpg","1.タンパク質の詳細を調べる (30秒)","2.GOタームの分類について (1分27秒)","3.タンパク質の機能情報を調べる(2分49秒)","4.GOタームの階層構造について (3分58秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"530","","togotv.2011.124","","20111025","mfoldを使って核酸の二次構造を予測する〜応用編〜","mfoldは核酸が塩基対を形成する際の自由エネルギー変化を計算して、二次構造を予測するツールです。mfoldでは、自由エネルギーが最小になる塩基対の形成の仕方を計算して二次構造を表示するだけでなく、エネルギー最小のものよりもエネルギーが高いものも計算して、その後の様々な解析に役立つデータが数多く出力されます。基本操作編の動画では二次構造を計算して、構造を見るところまでを解説しましたが、応用編のこの動画では、解析に役に立つ様々なデータを解説します。さらに、一本鎖DNAのフォールディングができるDNA mfoldや短い核酸を簡単にフォールディングできるQuikfoldについても解説しています。","塩基配列,構造解析,ウェブツール","http://youtu.be/8gsSHOIa6Ps","http://togotv.dbcls.jp/movie/111025mfold_2.mov","http://doi.org/10.7875/togotv.2011.124","http://togotv.dbcls.jp/images/20111025_0.jpg","111025mfold_2.mov","thumbnail/20111025_0.jpg","1.配列入力時のパラメータ設定 (38秒)","2.Energy dot plotのグラフィックスパラメータを変更する (1分59秒)","3.p-numとh-numを見る (3分42秒)","4.ss-countを見る (4分20秒)","5.二次構造の図のグラフィックスパラメータを変更する (5分31秒)","6.DNA mfoldとQuikfoldの解説 (7分51秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"529","","togotv.2011.123","","20111024","mfoldを使って核酸の二次構造を予測する〜基本操作編〜","mfoldは核酸が塩基対を形成する際の自由エネルギー変化を計算して、二次構造を予測するツールです。mfoldでは、自由エネルギーが最小になる塩基対の形成の仕方を計算して二次構造を表示するだけでなく、エネルギー最小のものよりもエネルギーが高いものも計算して、その後の様々な解析に役立つデータが数多く出力されます。","塩基配列,構造解析,ウェブツール","http://youtu.be/B4_FuEtfBDg","http://togotv.dbcls.jp/movie/111024mfold_1.mov","http://doi.org/10.7875/togotv.2011.123","http://togotv.dbcls.jp/images/20111024_0.jpg","111024mfold_1.mov","thumbnail/20111024_0.jpg","1.配列の入力〜パラメーターの設定 (55秒)","2.Energy dot plotを見る (4分31秒)","3.計算した二次構造を図で見る (6分8秒)","4.構造の画像ファイルをまとめてダウンロードする (6分53秒)","5.Energy dot plotで構造を比較する (7分34秒)","6.Circular structure plotを使って塩基対の形成の仕方を見る (8分5秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"528","","togotv.2011.122","","20111020","NCBI GEOの使い方2〜遺伝子プロファイルの検索・処理済みデータの取得〜","NCBI GEOはNCBIが提供・維持管理している遺伝子発現情報のデータベースです。今回はGEOの使い方第2弾として、GEOに登録されている多くのマイクロアレイデータのなかから興味のある遺伝子のプロファイルを検索する方法、およびその実験データの正規化されたファイルの取得方法を紹介しています。","発現解析,NCBI,遺伝子,GEO","http://youtu.be/a84nemOOjvA","http://togotv.dbcls.jp/movie/111020ncbigeo2.mov","http://doi.org/10.7875/togotv.2011.122","http://togotv.dbcls.jp/images/20111020_0.jpg","111020ncbigeo2.mov","thumbnail/20111020_0.jpg","1. 検索(30秒)","2. グラフの説明(1分5秒)","3. 処理済みデータの取得(3分7秒)","4. 処理済みデータの説明(4分11秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"527","","togotv.2011.121","","20111011","BrainStarsを使ってマウスの脳の各部位における遺伝子の発現量を調べる","BrainStarsとは、理化学研究所、近畿大学医学部解剖学教室によりつくられたマウス脳の包括的な遺伝子発現データベースです。マウス脳の重要な51部位を選択し、 microarray で測定しています。microarrayを用いているので定量性は高く、発現量を定量的に調べるのに向いています。さらに、二峰性や三峰性など多峰性に遺伝子発現の変化している遺伝子の同定、脳領域マーカー遺伝子候補の同定、脳内で発現の変化しない遺伝子(脳で使うことのできるコントロール遺伝子候補)の同定、神経伝達物質や神経ホルモンとその発現領域の同定などの解析もされています。今回は、その基本的な検索、操作方法について説明します。","遺伝子,可視化,発現解析,データベース","http://youtu.be/XmkTi-6LFJA","http://togotv.dbcls.jp/movie/111011brainstars.mov","http://doi.org/10.7875/togotv.2011.121","http://togotv.dbcls.jp/images/20111011_0.jpg","111011brainstars.mov","thumbnail/20111011_0.jpg","1.検索 (38秒)","2.プローブの詳細の表示 (1分22秒)","3.検索以外の機能 (2分53秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"526","","togotv.2011.120","","20110929","WindowsでUNIX! 2. ファイル操作編","Cygwinは、Windows上で、Unix系の便利なプログラムを利用するためのツールです。具体的には、マイクロアレイのデータを簡単に編集するなどのテキスト編集や、正規表現を用いた柔軟なファイル操作、そして、プログラム環境やツールの簡単なインストールなど、利用性は多岐に富んでいます。 今回は、Cygwinの基本的な操作であるファイル操作について、イメージを掴むための図と、エクスプローラでの操作と比較しながら、解説していきます。","環境設定,プログラミング,UNIX","http://youtu.be/ftIvdJXL4DE","http://togotv.dbcls.jp/movie/110929cygwin_usage.mov","http://doi.org/10.7875/togotv.2011.120","http://togotv.dbcls.jp/images/20110929_0.jpg","110929cygwin_usage.mov","thumbnail/20110929_0.jpg","1.ディレクトリ構造の説明 (28秒)","2.cd,pwd,lsコマンドの説明 (1分7秒)","3.ファイルの一括操作の説明 (4分38秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"525","","togotv.2011.119","","20110928","Allen Brain Atlasを使い倒す 〜基本編〜 2011","The Allen Mouse Brain Atlasとは、米国シアトルのAllen脳科学研究所が提供する、マウス脳を網羅する21000個以上の遺伝子発現を詳細に示した三次元マップを構築するためのデータベースです。 マウス脳を数十万個の切片にし、in situ hybridizationを行い、すべての遺伝子の発現パターンを細胞レベルまで示しています。 今回は、その基本的な検索、操作方法について説明します。","遺伝子,可視化,発現解析,データベース","http://youtu.be/lnEjNMwGte0","http://togotv.dbcls.jp/movie/110928allenbrainatlas.mov","http://doi.org/10.7875/togotv.2011.119","http://togotv.dbcls.jp/images/20110928_0.jpg","110928allenbrainatlas.mov","thumbnail/20110928_0.jpg","1.Gene Searchで検索をする (39秒)","2.Anatomic Searchで検索する (2分40秒)","3.Fine Structure Searchで検索する (3分28秒)","4.Boolean Syntax Queryで検索する (4分15秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"524","","togotv.2011.118","","20110927","BioMartを使ってさまざまなIDの変換対応表を作成する","BioMartは、the Ontario Institute forCancer Research (OiCR) とthe European Bioinformatics Institute (EBI) が共同で開発しているクエリ指向型データ管理システムです。この動画では 1,BioMartを使ってさまざまなIDの対応表を作成する 2,自分が持っているIDリストをBioMartを使って別のIDに変換する 以上2つの方法を紹介します。","ゲノム,遺伝子,データベース","http://youtu.be/hYDEstTLgDc","http://togotv.dbcls.jp/movie/110927biomart_id.mov","http://doi.org/10.7875/togotv.2011.118","http://togotv.dbcls.jp/images/20110927_0.jpg","110927biomart_id.mov","thumbnail/20110927_0.jpg","1.IDの対応表を作成する (28秒)","2.様々なデータベースIDについて (2分47秒)","3.手持ちのIDリストを別のIDに変換する(3分28秒)","4.結果をファイルに保存する (5分29秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"523","","togotv.2011.117","","20110922","データベースを探す・検索する・ダウンロードする@AJACS本郷9","本日の統合TVは、2011年7月15日に開催された、統合データベース講演会: AJACS本郷9から、バイオサイエンスデータベースセンター(NBDC) 三橋 信孝 による「データベースを探す・検索する・ダウンロードする」をお送りします。","実習, AJACS,データベース","http://youtu.be/iQPQ3tdbDSY","http://togotv.dbcls.jp/movie/110922AJACS27_Mitsuhashi.mov","http://doi.org/10.7875/togotv.2011.117","http://togotv.dbcls.jp/images/20110922_0.jpg","110922AJACS27_Mitsuhashi.mov","thumbnail/20110922_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"522","","togotv.2011.116","","20110916","Ensembl tips 配列を比較する 2011","Ensemblは、 The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。 今回は、その第一弾として多くの人が直面するであろう「配列の比較」に焦点を当てています。Ensemblでは、ヒトやマウスなど生物種間での配列のアラインメント表示はもちろんのこと、複数種間での比較やシンテニー領域の検索などが可能です。それらの使い方を紹介しています。","塩基配列,配列解析,遺伝子,ゲノム,Ensembl,アラインメント","http://youtu.be/dMoULhnJ-dY","http://togotv.dbcls.jp/movie/110916Ensemblcompare.mov","http://doi.org/10.7875/togotv.2011.116","http://togotv.dbcls.jp/images/20110916_0.jpg","110916Ensemblcompare.mov","thumbnail/20110916_0.jpg","1. ゲノム配列を比較する。(1分33秒)","2. 複数種のゲノム配列を比較する。(4分40秒)","3. シンテニー領域を検索する。(6分36秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"521","","togotv.2011.115","","20110914","CentroidFoldを使ってRNAの2次構造を予測する","CentroidFoldは一般化セントロイド推定量と呼ばれる新しい推定量を用いて、高い精度でRNAの二次構造を予測できるソフトウェアです。近年高等生物の細胞中には、タンパク質に翻訳されずに機能するnon-codingRNA(ncRNA:非コードRNA)が多数存在することが明らかになりました。このようなncRNAの中には遺伝子の発現制御や細胞のガン化などで重要な役割を果たしているものがあることが分かってきました。このncRNAが機能を発現するには、長い1本鎖であるRNA分子が部分的に2本鎖を形成して二次構造と呼ばれる特異的な構造をつくるため、正確な二次構造を予測する重要性が以前に比べて増してきています。今回は、CentroidFoldの基本的な使い方とオプションについて説明しています。","塩基配列,構造解析,ソフトウェア","http://youtu.be/FGw5rpKbr0E","http://togotv.dbcls.jp/movie/110914centroidfold2.mov","http://doi.org/10.7875/togotv.2011.115","http://togotv.dbcls.jp/images/20110914_0.jpg","110914centroidfold2.mov","thumbnail/20110914_0.jpg","1. FASTA形式で構造予測する。(43秒)","2. CLUSTALW形式で構造予測する。(3分31秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"520","","togotv.2011.114","","20110913","CueMol2でタンパク質の立体構造を見る・2","CueMol2はタンパク質はじめ生体高分子の構造を見るための日本製のフリーソフトウェアです。 既存の分子ビューワと比較して、動作が軽く操作しやすいのが特長です。 単に分子モデルを画像ファイルとして出力するだけでなく、フリーソフトPOV-Rayと併用すれば論文やプレゼンの使用に堪える美しい分子グラフィックスを作成できます。1本目の動画に引き続き、CueMol2の基本的な機能を紹介していきます。 ここでは「分子モデルを着色する」「分子モデルのプロパティを変更し外見を調整する」機能を説明します。","タンパク質,構造解析,可視化,ソフトウェア","http://youtu.be/2Jrps-JHofI","http://togotv.dbcls.jp/movie/110913cuemol2.mov","http://doi.org/10.7875/togotv.2011.114","http://togotv.dbcls.jp/images/20110913_0.jpg","110913cuemol2.mov","thumbnail/20110913_0.jpg","1. 分子モデルを着色する。(6秒)","2. Rendererのプロパティを変更し、モデルの形状を調整する(3分9秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"519","","togotv.2011.113","","20110912","CueMol2でタンパク質の立体構造を見る","CueMol2はタンパク質はじめ生体高分子の構造を見るための日本製のフリーソフトウェアです。 既存の分子ビューワと比較して、動作が軽く操作しやすいのが特長です。 単に分子モデルを画像ファイルとして出力するだけでなく、フリーソフトPOV-Rayと併用すれば論文やプレゼンの使用に堪える美しい分子グラフィックスを作成できます。電子密度や結晶構造の表示など応用的な機能まで持ちますが、ここでは基礎的な機能を動画2本に分けて説明します。まず1本目のこの動画では、「分子を表示する」「モデルを操作する」機能を紹介します。","タンパク質,構造解析,可視化,ソフトウェア","http://youtu.be/eYC9y17u8EE","http://togotv.dbcls.jp/movie/110912cuemol.mov","http://doi.org/10.7875/togotv.2011.113","http://togotv.dbcls.jp/images/20110912_0.jpg","110912cuemol.mov","thumbnail/20110912_0.jpg","1. ファイルを開き、分子モデルを見る。(1分33秒)","2. モデルの一部を選択する。(4分10秒)","3. Cameraを使って視点を保存する。(7分31秒)","4. ファイルとして保存する。(8分15秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"518","","togotv.2011.112","","20110906","EBI Roadshow at DBCLS - Transcriptomics and Pathways","The purpose of the roadshow is to train experimental biologists how to make the most of some of Europe's most widely used public biological databases, such as Ensembl, ArrayExpress, BioMart, Expression Atlas and Reactome. The roadshow combines presentations and hands-on practical sessions. Trainees are guided through the selected databases and tools by expert trainers from the European Bioinformatics Institute (EBI), the Swiss Institute of Bioinformatics (SBI), the European Patent Office (EPO) and the BRENDA project. More information is available on the Bioinformatics Roadshow website.On the second day of the Bioinformatics Roadshow (Sep. 6) in Japan, the lecture and exercises were held at DBCLS. In this talk, James Watson makes a presentation entitled ""Transcriptomics and Pathways"".","講演,English,EBI,パスウェイ解析","http://youtu.be/Sa9mCYM6Uf4","http://togotv.dbcls.jp/movie/110906EBIroadshow_d2.mov","http://doi.org/10.7875/togotv.2011.112","http://togotv.dbcls.jp/images/20110906_0.jpg","110906EBIroadshow_d2.mov","thumbnail/20110906_0.jpg","1. Short Introduction To EMBL-EBI (0:00:04)","2. Functional Genomics resources at the EBI: ArrayExpress and Expression Atlas (0:22:55)","3. ArrayExpress/Atlas exercises (0:49:00)","4. Reactome: a curated biological pathway database (1:41:18)","5. Reactome exercises (1:57:00)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"517","","togotv.2011.111","","20110905","EBI Roadshow at DBCLS - Access to Genes and Genomes with Ensembl","The purpose of the roadshow is to train experimental biologists how to make the most of some of Europe's most widely used public biological databases, such as Ensembl, ArrayExpress, BioMart, Expression Atlas and Reactome. The roadshow combines presentations and hands-on practical sessions. Trainees are guided through the selected databases and tools by expert trainers from the European Bioinformatics Institute (EBI), the Swiss Institute of Bioinformatics (SBI), the European Patent Office (EPO) and the BRENDA project. More information is available on the Bioinformatics Roadshow website.On the first day of the Bioinformatics Roadshow (Sep. 5) in Japan, the lecture and exercises were held at DBCLS. In this talk, Jana Vandrovcova makes a presentation entitled ""Access to Genes and Genomes with Ensembl"".","講演,English,EBI,遺伝子,ゲノム,Ensembl","http://youtu.be/-CwSGCLB0b4","http://togotv.dbcls.jp/movie/110905EBIroadshow_d1.mov","http://doi.org/10.7875/togotv.2011.111","http://togotv.dbcls.jp/images/20110905_0.jpg","110905EBIroadshow_d1.mov","thumbnail/20110905_0.jpg","1. Introduction to EBI: overview of most relevant databases (0:00:32)","2. Origin, goals, data and analysis in the Ensembl project Website Walkthrough (0:36:55)","3. Retrieving datasets using the data mining tool BioMart (1:09:00)","4. Comparative genomics and proteomics: orthologues, protein families, whole genome alignments and syntenic regions (1:25:09)","5. Variations: Single nucleotide polymorphisms in Ensembl, comparison of strains, breeds, individuals using the browser and BioMart (1:57:59)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"516","","togotv.2011.110","","20110830","RCSB PDBを使ってタンパク質の立体構造を調べる 2011","RCSB PDB (Protein Data Bank)は、タンパク質の立体構造データベースです。立体構造のデータは、タンパク質を構成する原子の座標データとして保存されています。今回は、オプシンを例として「タンパク質の立体構造を調べる」という基本的な利用方法を解説するほか、PDBファイルをダウンロードせずに内容を参照したり、ブラウザ上で構造を確認する方法を解説します。PDB IDやキーワード以外にもAuthor・タンパク質の分類・分子機能など様々な条件から構造を検索することが可能です。","タンパク質,構造解析,可視化,データベース,PDB","http://youtu.be/m1Ggcvzi6g4","http://togotv.dbcls.jp/movie/110830RCSBPDB.mov","http://doi.org/10.7875/togotv.2011.110","http://togotv.dbcls.jp/images/20110830_0.jpg","110830RCSBPDB.mov","thumbnail/20110830_0.jpg","1. キーワードによる検索 (1分56秒)","2. 構造ページのアイコン内容説明 (3分00秒)","3. Jmolによる立体構造の表示 (4分18秒)","4. 詳細ページの内容説明 (5分07秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"515","","togotv.2011.109","","20110827","URI Resolution and Management Service with LOD","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Pyung Kim makes a presentation entitled ""URI Resolution and Management Service with LOD.""","講演,English,BioHackathon","http://youtu.be/qbXhb7YL_m8","http://togotv.dbcls.jp/movie/110827BH11_21Pyung.mov","http://doi.org/10.7875/togotv.2011.109","http://togotv.dbcls.jp/images/20110827_0.jpg","110827BH11_21Pyung.mov","thumbnail/20110827_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"514","","togotv.2011.108","","20110826","Large-scale information extraction through text mining","NBDC / <%=a ""DBCLS|http://dbcls.rois.ac.jp/en/"" %>BioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Martin Gerner makes a presentation entitled ""Large-scale information extraction through text mining.""","講演,English,BioHackathon","http://youtu.be/7OCTYtyus-4","http://togotv.dbcls.jp/movie/110826BH11_20Martin.mov","http://doi.org/10.7875/togotv.2011.108","http://togotv.dbcls.jp/images/20110826_0.jpg","110826BH11_20Martin.mov","thumbnail/20110826_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"513","","togotv.2011.107","","20110825","Connecting TOPSAN to Computational Analysis via Semantic Web Technology","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Chris Zmasek makes a presentation entitled ""Connecting TOPSAN to Computational Analysis via Semantic Web Technology."" The presentation slides are here (Google Docs).","講演,English,BioHackathon","http://youtu.be/5rEDgHmweqg","http://togotv.dbcls.jp/movie/110825BH11_19Chris.mov","http://doi.org/10.7875/togotv.2011.107","http://togotv.dbcls.jp/images/20110825_0.jpg","110825BH11_19Chris.mov","thumbnail/20110825_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"512","","togotv.2011.106","","20110824","The Tree of Life as central unifying concept for the integration of
phylogenetic knowledge","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Rutger Vos makes a presentation entitled ""The Tree of Life as central unifying concept for the integration of phylogenetic knowledge.""","講演,English,BioHackathon","http://youtu.be/pHY9EYKpv9E","http://togotv.dbcls.jp/movie/110824BH11_18Rutger.mov","http://doi.org/10.7875/togotv.2011.106","http://togotv.dbcls.jp/images/20110824_0.jpg","110824BH11_18Rutger.mov","thumbnail/20110824_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"511","","togotv.2011.105","","20110823","Modeling and Populating a Large Biomedical Knowledge Base for Genome-Scale
Analysis","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Kevin Livingston makes a presentation entitled ""Modeling and Populating a Large Biomedical Knowledge Base for Genome-Scale Analysis.""","講演,English,BioHackathon","http://youtu.be/gXFxCgowrbI","http://togotv.dbcls.jp/movie/110823BH11_17Kevin.mov","http://doi.org/10.7875/togotv.2011.105","http://togotv.dbcls.jp/images/20110823_0.jpg","110823BH11_17Kevin.mov","thumbnail/20110823_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"510","","togotv.2011.104","","20110822","PSICQUIC - Standard access to molecular interaction databases","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Chris Zmasek makes a presentation entitled ""Connecting TOPSAN to Computational Analysis via Semantic Web Technology."" The presentation slides are here (Google Docs).","講演,English,BioHackathon","http://youtu.be/o08q3CfSppw","http://togotv.dbcls.jp/movie/110822BH11_16Bruno.mov","http://doi.org/10.7875/togotv.2011.104","http://togotv.dbcls.jp/images/20110822_0.jpg","110822BH11_16Bruno.mov","thumbnail/20110822_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"509","","togotv.2011.103","","20110821","Ontology-based integration and analysis of phenotypes","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Robert Hoehndorf makes a presentation entitled ""Ontology-based integration and analysis of phenotypes.""","講演,English,BioHackathon","http://youtu.be/3CkLbh6AONk","http://togotv.dbcls.jp/movie/110821BH11_15Robert.mov","http://doi.org/10.7875/togotv.2011.103","http://togotv.dbcls.jp/images/20110821_0.jpg","110821BH11_15Robert.mov","thumbnail/20110821_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"508","","togotv.2011.102","","20110820","Semantic Systems Biology: enabling integrative biology via Semantic Web
technologies","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Erick Antezana makes a presentation entitled ""Semantic Systems Biology: enabling integrative biology via Semantic Web technologies.""","講演,English,BioHackathon","http://youtu.be/WMg9Lt5nMTA","http://togotv.dbcls.jp/movie/110820BH11_14Erick.mov","http://doi.org/10.7875/togotv.2011.102","http://togotv.dbcls.jp/images/20110820_0.jpg","110820BH11_14Erick.mov","thumbnail/20110820_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"507","","togotv.2011.101","","20110819","MIRIAM Registry: annotations and cross referencing framework","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Camille Laibe makes a presentation entitled ""MIRIAM Registry: annotations and cross referencing framework."" ","講演,English,BioHackathon","http://youtu.be/0XLpRO3-UDs","http://togotv.dbcls.jp/movie/110819BH11_13Camille.mov","http://doi.org/10.7875/togotv.2011.101","http://togotv.dbcls.jp/images/20110819_0.jpg","110819BH11_13Camille.mov","thumbnail/20110819_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"506","","togotv.2011.100","","20110818","ISA infrastructure: collecting and managing multi-omics datasets with rich
semantics","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Philippe Rocca-Serra makes a presentation entitled ""ISA infrastructure: collecting and managing multi-omics datasets with rich semantics.""","講演,English,BioHackathon","http://youtu.be/Ce8PFvulVLU","http://togotv.dbcls.jp/movie/110818BH11_12Philippe.mov","http://doi.org/10.7875/togotv.2011.100","http://togotv.dbcls.jp/images/20110818_0.jpg","110818BH11_12Philippe.mov","thumbnail/20110818_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"505","","togotv.2011.099","","20110817","BioSharing: data sharing standards, resources and cooperating procedures","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Susanna Sansone makes a presentation entitled ""BioSharing: data sharing standards, resources and cooperating procedures.""","講演,English,BioHackathon","http://youtu.be/5LXgBCuJdMI","http://togotv.dbcls.jp/movie/110817BH11_11Susanna.mov","http://doi.org/10.7875/togotv.2011.099","http://togotv.dbcls.jp/images/20110817_0.jpg","110817BH11_11Susanna.mov","thumbnail/20110817_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"504","","togotv.2011.098","","20110816","RDF Foundry - a call for a community effort to harmonize triple store
practices","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Vladimir Mironov makes a presentation entitled ""RDF Foundry - a call for a community effort to harmonize triple store practices.""","講演,English,BioHackathon,RDF","http://youtu.be/HjW2j9JLlDI","http://togotv.dbcls.jp/movie/110816BH11_10Vladimir.mov","http://doi.org/10.7875/togotv.2011.098","http://togotv.dbcls.jp/images/20110816_0.jpg","110816BH11_10Vladimir.mov","thumbnail/20110816_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"503","","togotv.2011.097","","20110815","パワーポイントの図形描画機能でイラストをつくる方法 その3","スライドやポスター等のプレゼンテーション用資料に「イメージ通りのイラストがみつからない」、「イラストと色が合わなくて浮いてしまう」、そんなときのために パワー・/a>の図形描画機能(オートシェイプ)でイラストをつくる方法を紹介します。 パワーポイントの図形描画機能を使うと簡単なマウス操作で図形を作成することができ、色や形も自由に設定することができます。これを組み合わせてイラストをつくれば、パワーポイント上で配置しながら、スライドに合わせた色や線の変更も可能です。第1弾の注射器編、第2弾のマウス編に続き、第3弾の今回は遠沈管および血液寒天培地のイラスト作成を例に、主に色のグラデーション・透過機能を利用したイラストの立体化を中心にしたパワーポイントの図形描写機能の使い方やイラスト作成におけるtipsを紹介します。","環境設定,可視化,ソフトウェア,パワーポイント","http://youtu.be/ARMY2MNVHAY","http://togotv.dbcls.jp/movie/110815powerpointillust3.mov","http://doi.org/10.7875/togotv.2011.097","http://togotv.dbcls.jp/images/20110815_0.jpg","110815powerpointillust3.mov","thumbnail/20110815_0.jpg","1. グラデーションの設定 (1分53秒)","2. 透過性の設定 (6分15秒)","3. より立体的にするためには (9分52秒)","4. 血液寒天培地の場合 (10分42秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"502","","togotv.2011.096","","20110814","NCBO Web services and the Development of Semantic Applications","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Trish Whetzel makes a presentation entitled ""NCBO Web services and the Development of Semantic Applications.""","講演,English,BioHackathon","http://youtu.be/Xc__MwO6SVk","http://togotv.dbcls.jp/movie/110814BH11_09Trish.mov","http://doi.org/10.7875/togotv.2011.096","http://togotv.dbcls.jp/images/20110814_0.jpg","110814BH11_09Trish.mov","thumbnail/20110814_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"501","","togotv.2011.095","","20110813","The EDAM ontology of data and methods, and BioXSD","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Matus Kalas makes a presentation entitled ""The EDAM ontology of data and methods, and BioXSD.""","講演,English,BioHackathon","http://youtu.be/C2tEkekx8Pk","http://togotv.dbcls.jp/movie/110813BH11_08Matus.mov","http://doi.org/10.7875/togotv.2011.095","http://togotv.dbcls.jp/images/20110813_0.jpg","110813BH11_08Matus.mov","thumbnail/20110813_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"500","","togotv.2011.094","","20110812","From Triples to Axioms: On the Path to Formalizing Scientific Knowledge","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Michel Dumontier makes a presentation entitled ""From Triples to Axioms: On the Path to Formalizing Scientific Knowledge.""","講演,English,BioHackathon,RDF","http://youtu.be/o1baxQlseJY","http://togotv.dbcls.jp/movie/110812BH11_07Michel.mov","http://doi.org/10.7875/togotv.2011.094","http://togotv.dbcls.jp/images/20110812_0.jpg","110812BH11_07Michel.mov","thumbnail/20110812_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"499","","togotv.2011.093","","20110811","Biomedical semantics in the Semantic Web","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Andrea Splendiani makes a presentation entitled ""Biomedical semantics in the Semantic Web.""","講演,English,BioHackathon,RDF","http://youtu.be/X1xUj7t7xQA","http://togotv.dbcls.jp/movie/110811BH11_06Andrea.mov","http://doi.org/10.7875/togotv.2011.093","http://togotv.dbcls.jp/images/20110811_0.jpg","110811BH11_06Andrea.mov","thumbnail/20110811_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"498","","togotv.2011.092","","20110809","BioMart introduces semantic-web querying to federated biomedical-scale
databases","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Joachim Baran makes a presentation entitled ""BioMart introduces semantic-web querying to federated biomedical-scale databases.""","講演,English,BioHackathon","http://youtu.be/PHQJ03DaWo","http://togotv.dbcls.jp/movie/110809BH11_04Joachim.mov","http://doi.org/10.7875/togotv.2011.092","http://togotv.dbcls.jp/images/20110809_0.jpg","110809BH11_04Joachim.mov","thumbnail/20110809_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"497","","togotv.2011.091","","20110808","SPARQLing UniProt RDF: Using RDF based technologies to aid biological
curation efforts","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Jerven Bolleman makes a presentation entitled ""SPARQLing UniProt RDF: Using RDF based technologies to aid biological curation efforts.""","講演,English,BioHackathon,RDF","http://youtu.be/YDP5_1rqsTo","http://togotv.dbcls.jp/movie/110808BH11_03Jerven.mov","http://doi.org/10.7875/togotv.2011.091","http://togotv.dbcls.jp/images/20110808_0.jpg","110808BH11_03Jerven.mov","thumbnail/20110808_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"496","","togotv.2011.090","","20110807","The Program Concerning Technology Development for Database Integration","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Atsuko Yamaguchi who is an organizer of BioHackathon 2011 makes a presentation entitled ""The Program Concerning Technology Development for Database Integration.""","講演,English,BioHackathon","http://youtu.be/BnzSkPVZs8I","http://togotv.dbcls.jp/movie/110807BH11_02Atsuko.mov","http://doi.org/10.7875/togotv.2011.090","http://togotv.dbcls.jp/images/20110807_0.jpg","110807BH11_02Atsuko.mov","thumbnail/20110807_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"495","","togotv.2011.089","","20110806","Introduction to the NBDC/DBCLS BioHackathon 2011","NBDC / DBCLSBioHackathon 2011 was held in Kyoto, Japan. Main focus of the BioHackathon is to develop technologies for handling Linked Data in life science. The participants discussed, explored and developed SPARQL endpoints, semantic web services, triple stores, ontologies, natural language processing, visualization and Open Bio* tools to utilize RDF data.On the first day of the BioHackathon (Aug. 21), public symposium of the BioHackathon 2011 was held at Campus Plaza Kyoto. In this talk, Toshiaki Katayama who is an organizer of BioHackathon 2011 makes a presentation entitled ""Introduction to the NBDC/DBCLS BioHackathon 2011.""","講演,English,BioHackathon","http://youtu.be/R5K_ZQpq3Y4","http://togotv.dbcls.jp/movie/110806BH11_01toshiaki.mov","http://doi.org/10.7875/togotv.2011.089","http://togotv.dbcls.jp/images/20110806_0.jpg","110806BH11_01toshiaki.mov","thumbnail/20110806_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"494","","togotv.2011.088","","20110805","NCBI BioProjectの使い方","BioProjectは以前のNCBI Genome Projectデータベースを大幅に拡張したもので、ゲノム解読プロジェクトだけでなく、transcriptomeやEpigeneticsやvariation detectionなど、ゲノムに関する様々なプロジェクトを対象とした新しいデータベースです。GOLDとは異なり、BioProjectはプロジェクトの内容やプロジェクトに伴い出てきたデータへのアクセスのしやすさに重きを置いています。 この動画では 1,ゲノムプロジェクトを検索する。 2,特定の生物種に関するプロジェクト全てを俯瞰する。 3,BioProject独自のデータ構造に着目し、プロジェクト間のつながりを把握する。 以上3つの事柄を中心にBioProjectの解説を行います。","ゲノム,遺伝子,塩基配列,NCBI,データベース","http://youtu.be/FZxJ2WWvkRU","http://togotv.dbcls.jp/movie/110805BioProject.mov","http://doi.org/10.7875/togotv.2011.088","http://togotv.dbcls.jp/images/20110805_0.jpg","110805BioProject.mov","thumbnail/20110805_0.jpg","1.ゲノムプロジェクトを検索する (41秒)","2.プロジェクトの見方について (2分14秒)","3.特定の生物種に関するプロジェクト全てを俯瞰する(3分13秒)","4.BioProjectのデータ構造について (5分00秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"493","","togotv.2011.087","","20110803","Avadis NGS の使い方〜導入編〜","Avadis NGS は次世代シーケンサ(以下 NGS)から得られたデータの解析のための商用ソフトウェアです(無料で20日間試用できます)。Strand Scientific Intelligence 社が開発、日本では Agilent 社が販売しています。 Avadis NGS ではマッピングされたショートリードのデータ(SAM や BAM フォーマット)を読み込み、クオリティ・チェックを施した上で各種の解析およびその可視化を行う、という一連の流れを一つのソフトだけで行うことができます。","NGS,環境設定,パスウェイ解析,多型,発現解析,ソフトウェア","http://youtu.be/m-F4xmkEUoM","http://togotv.dbcls.jp/movie/110803Avadis_NGS_install.mov","http://doi.org/10.7875/togotv.2011.087","http://togotv.dbcls.jp/images/20110803_0.jpg","110803Avadis_NGS_install.mov","thumbnail/20110803_0.jpg","1.Avadis NGS サイトのアカウントを作成する (44秒)","2.ソフトウェアをダウンロードする (2分20秒)","3.ライセンスを取得する (2分52秒)","4.ソフトウェアをインストールする (4分5秒)","5.ソフトウェアをアクティベーションする (4分56秒)","6.アノテーションデータを導入する (5分42秒)","7.アノテーションデータをweb上からダウンロードする (6分59秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"492","","togotv.2011.086","","20110729","データベースを統合する活動の今までとこれから@AJACS本郷9","本日の統合TVは、2011年7月15日に開催された、統合データベース講演会: AJACS本郷9から、バイオサイエンスデータベースセンター(NBDC) 高祖 歩美 による「データベースを統合する活動の今までとこれから」をお送りします。","講演, AJACS","http://youtu.be/zMCSdVc0sd4","http://togotv.dbcls.jp/movie/110729AJACS27_koso.mov","http://doi.org/10.7875/togotv.2011.086","http://togotv.dbcls.jp/images/20110729_0.jpg","110729AJACS27_koso.mov","thumbnail/20110729_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"491","","togotv.2011.085","","20110726","signalPでタンパク質のシグナル配列を予測する","signalPは、タンパク質のシグナル配列の切断部位を予測することができるツールです。Neural NetworksとHidden Markov Modelsの2つのアルゴリズムを利用して切断位置を予測することができます。 今回の動画内では、ニワトリのLysozymeの配列を用いて検索を行っています。","配列解析,タンパク質,ウェブツール","http://youtu.be/uVOzStOR0XA","http://togotv.dbcls.jp/movie/110726signalP.mov","http://doi.org/10.7875/togotv.2011.085","http://togotv.dbcls.jp/images/20110726_0.jpg","110726signalP.mov","thumbnail/20110726_0.jpg","1.signalPのページにアクセスする (18秒)","2.クエリを入力して、検索パラメータを設定する (44秒)","3.検索を実行と結果の見方 (159秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"490","","togotv.2011.084","","20110725","GOLD -Genomes Online Databaseを使い倒す 2011","GOLDデータベースはゲノム塩基配列解読プロジェクトを集めたデータベースです。既に解読が終了したゲノムプロジェクトや、現在進行中のゲノムプロジェクトやメタゲノムプロジェクトについて調べることができます。塩基配列や、発表された論文、解析を実施している機関などへのリンクもあります。 今回はネコと硫黄細菌についてゲノムプロジェクトを検索し、そこから得られる情報の違いを説明し、また、メタゲノムプロジェクトなどGOLDのその他の機能についても解説します。","ゲノム,遺伝子,塩基配列,データベース","http://youtu.be/fJSeQn-5FCI","http://togotv.dbcls.jp/movie/110725gold.mov","http://doi.org/10.7875/togotv.2011.084","http://togotv.dbcls.jp/images/20110725_0.jpg","110725gold.mov","thumbnail/20110725_0.jpg","1.ネコゲノムプロジェクトの検索 (29秒)","2.硫黄細菌ゲノムプロジェクトの検索 (1分56秒)","3.リンクから得られる情報の解説 (2分49秒)","4.メタゲノムプロジェクトの検索 (4分53秒)","5.GOLDその他機能についての解説 (6分00秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"489","","togotv.2011.083","","20110723","RefSeqの検索とRefEX (Reference Expression dataset)@AJACS本郷9","本日の統合TVは、2011年7月15日に開催された、統合データベース講演会: AJACS本郷9から、ライフサイエンス統合データベースセンター(DBCLS) 特任助教 内藤 雄樹 による「RefSeqの検索とRefEX (Reference Expression dataset)」をお送りします。","実習, AJACS,発現解析,配列解析,遺伝子","http://youtu.be/H2sHE6igH9Y","http://togotv.dbcls.jp/movie/110723AJACS27_meso.mov","http://doi.org/10.7875/togotv.2011.083","http://togotv.dbcls.jp/images/20110723_0.jpg","110723AJACS27_meso.mov","thumbnail/20110723_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"488","","togotv.2011.082","","20110722","Sequence Read Archives(SRA)の活用術:その統計と検索@AJACS本郷9","本日の統合TVは、2011年7月15日に開催された、統合データベース講演会: AJACS本郷9から、ライフサイエンス統合データベースセンター(DBCLS) 特任助教 仲里 猛留 による「Sequence Read Archives(SRA)の活用術:その統計と検索」をお送りします。","実習, AJACS,NGS,データベース","http://youtu.be/sFnaBYR7GBA","http://togotv.dbcls.jp/movie/110722AJACS27_nakazato.mov","http://doi.org/10.7875/togotv.2011.082","http://togotv.dbcls.jp/images/20110722_0.jpg","110722AJACS27_nakazato.mov","thumbnail/20110722_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"487","","togotv.2011.081","","20110721","HeliScope CAGE法について@AJACS本郷9","本日の統合TVは、2011年7月15日に開催された、統合データベース講演会: AJACS本郷9から、理化学研究所 オミックス基盤研究領域(OSC)伊藤 昌可 先生による「HeliScope CAGE法について」をお送りします。約33分です。","実習, AJACS,NGS,CAGE","http://youtu.be/-De_ovSCXpI","http://togotv.dbcls.jp/movie/110721AJACS27_masaka.mov","http://doi.org/10.7875/togotv.2011.081","http://togotv.dbcls.jp/images/20110721_0.jpg","110721AJACS27_masaka.mov","thumbnail/20110721_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"486","","togotv.2011.080","","20110720","創薬インフォマティクスを用いた医薬品探索II","本日の統合TVは、2011年度夏学期(4〜7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義IIから、産業技術総合研究所生命情報工学研究センター創薬分子設計チーム 広川貴次 先生による「創薬インフォマティクスを用いた医薬品探索II」をお送りします。","講演,化合物","http://youtu.be/8r52RGVsOxQ","http://togotv.dbcls.jp/movie/110720GCOE11_hirokawa2.mov","http://doi.org/10.7875/togotv.2011.080","http://togotv.dbcls.jp/images/20110720_0.jpg","110720GCOE11_hirokawa2.mov","thumbnail/20110720_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"485","","togotv.2011.079","","20110719","創薬インフォマティクスを用いた医薬品探索I","本日の統合TVは、2011年度夏学期(4〜7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義IIから、産業技術総合研究所生命情報工学研究センター創薬分子設計チーム 広川貴次 先生による「創薬インフォマティクスを用いた医薬品探索I」をお送りします。","講演,化合物","http://youtu.be/wtqWIR14wvk","http://togotv.dbcls.jp/movie/110719GCOE11_hirokawa1.mov","http://doi.org/10.7875/togotv.2011.079","http://togotv.dbcls.jp/images/20110719_0.jpg","110719GCOE11_hirokawa1.mov","thumbnail/20110719_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"484","","togotv.2011.078","","20110712","siDirectのオプションを使いこなす&shRNAを設計する","siDirect(「エスアイダイレクト」と読みます)はそのsiRNAをデザインする日本発のツールです。インターフェースや説明書きがすべて英語となっており日本語化されていないので素人にはなじみにくいかもしれませんが、設計したsiRNAが他の遺伝子に影響を及ぼさないか他の遺伝子配列にたいする配列類似性検索も同時に行うことができ、便利なツールとなっています。前回の動画ではsiRNAの設計の基本を紹介しました。siDirectはいくつかの設計オプションを設定することができます。また、設計オプションを使用することでshRNAの設計をすることもできます。今回の動画では、siDirectのオプションの使い方およびshRNAの設計法について紹介します。","塩基配列,ウェブツール","http://youtu.be/o54s5kL2XZs","http://togotv.dbcls.jp/movie/110712sidirect2_ouyouhen.mov","http://doi.org/10.7875/togotv.2011.078","http://togotv.dbcls.jp/images/20110712_0.jpg","110712sidirect2_ouyouhen.mov","thumbnail/20110712_0.jpg","1.siDirectにアクセスする (7秒)","2.設計オプションの詳細 (1分01秒)","3.shRNAの設計(4分03秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"483","","togotv.2011.077","","20110711","NCBI GEOの使い方1〜マイクロアレイデータの検索・取得〜 2011","NCBI GEO(Gene Expression Omnibus; 「ジオ」あるいは「ゲオ」と発音します)はNCBIが提供・維持管理している遺伝子発現情報のデータベースです。GEOには、主にマイクロアレイ実験で得られたデータが日々蓄積されており、その登録データ数は世界最大です。それらの中から、自分の興味のある発現データセットや遺伝子プロファイルを検索することができるだけでなく、それらの生データを自由にダウンロードすることが可能です。 今回は、目的のマイクロアレイ実験データセットを検索し生データをダウンロードする方法および、プラットフォームの登録実験数が多すぎるときの対処法について説明しています。","発現解析,NCBI,GEO","http://youtu.be/WS5gDfG2Now","http://togotv.dbcls.jp/movie/110711ncbigeo1.mov","http://doi.org/10.7875/togotv.2011.077","http://togotv.dbcls.jp/images/20110711_0.jpg","110711ncbigeo1.mov","thumbnail/20110711_0.jpg","1. 検索〜全データダウンロード(28秒)","2. 1サンプルのデータダウンロード(3分46秒)","3. 登録実験数が極端に多い場合(4分13秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"482","","togotv.2011.076","","20110705","MEGAを使って配列アラインメントおよび系統解析をする","MEGA (Molecular Evolutionary Genetics Analysis)は、DNA、タンパク質配列データの分子進化・系統学的解析を行うためのフリーのソフトウェアで、Tamura K らによって作成されています。MEGAの特徴は、シークエンサーのファイル(ab1, abi, scfなど)を直接読み込めるため、波形データと配列データを一緒に解析できることです。また、Windows、Mac OS、Linuxとマルチプラットフォームで動作します。 今回は、いくつかの遺伝子(PPARやTP53など)を例として、多重アラインメントの実行と系統樹を作成する方法を説明します。","塩基配列,配列解析,ソフトウェア,アラインメント","http://youtu.be/KSXiE8C6nus","http://togotv.dbcls.jp/movie/110705mega.mov","http://doi.org/10.7875/togotv.2011.076","http://togotv.dbcls.jp/images/20110705_0.jpg","110705mega.mov","thumbnail/20110705_0.jpg","1. インストール(19秒)","2. アラインメント(1分25秒)","3. 系統樹解析(6分50秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"481","","togotv.2011.075","","20110701","ライフサイエンス辞書を使い倒す2011〜オンライン辞書編〜","ライフサイエンス辞書は、 京都大学大学院薬学研究科の金子周司先生が開発されている生命科学向けの辞書サービスで、生命科学用語について総合的で新しい語彙を収録した英日対訳およびシソーラス情報を教育研究者および学生に提供し,ひいては我が国の生命科学の発展に寄与することを目的としています。このプロジェクトでは、広範な生命科学の学問領域で使われる専門用語,対訳,用法,各種の統計情報を分析,収集するとともに,実際に電子メディアで活用することのできる電子辞書やパソコンツールを開発し,そのほとんどを無償で配布しています。今回紹介するWebLSDオンライン辞書は、英和・和英検索が2011年3月20日に改訂され、 英語11万語,日本語12万語に拡張されています。また共起検索およびシソーラスも充実しています。さらに、スマートフォン用のWeb LSD mini(WebLSD 2010年1月版:英和103,143語,和英116,740語,用例22,261文,音声16,146語)の運用も開始され、スマートフォンからの検索もしやすくなっています。これらの辞書は、学術論文の計量的な解析を行って作成した独自のデータに基づいており,その解析材料としてはPubMedで公開されている膨大な文献抄録の他,協力を得られた出版社,学会などから提供されたテキスト情報を用いられているのが最大の特徴です。","辞書,文献検索","http://youtu.be/ttsZxtqQESM","http://togotv.dbcls.jp/movie/110701LSD.mov","http://doi.org/10.7875/togotv.2011.075","http://togotv.dbcls.jp/images/20110701_0.jpg","110701LSD.mov","thumbnail/20110701_0.jpg","1.ライフサイエンス辞書のページにアクセスする (23秒)","2.英和辞書検索 (1分10秒)","3.見出し語の共起表現検索 (3分10秒)","4.見出し語の用例検索 (4分30秒)","5.シソーラス検索 (4分54秒)","6.スマートフォン用Web LSD miniの紹介 (5分47秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"480","","togotv.2011.074","","20110630","Cytoscape を使い倒す!〜応用発展編〜","Cytoscapeとは、生物学的ネットワーク(グラフ)を可視化&解析できるオープンソースプラットフォームです。もともとは生物学的ネットワークのためにオブジェクト指向型言語Javaで書かれたソフトですが、もちろん生物以外を対象にすることもできます。手軽な操作でネットワークの画像を出力することができ、また解析をすることもできます。 今回は応用発展編として、大量データの読み込みの仕方、フィルターのかけ方、ネットワークの可視化について説明します。","可視化,パスウェイ解析,発現解析","http://youtu.be/jui403U8ols","http://togotv.dbcls.jp/movie/110630cytoscape2.mov","http://doi.org/10.7875/togotv.2011.074","http://togotv.dbcls.jp/images/20110630_0.jpg","110630cytoscape2.mov","thumbnail/20110630_0.jpg","1. Cytoscape で読み込めるファイル形式の説明 (00分00秒)","2. ネットワークデータ (galFiltered.csv) の内容説明 (00分32秒)","3. ネットワークデータ (galFiltered.csv) の読み込み (1分08秒)","4. マイクロアレイデータ (galExpData.csv) の内容説明 (2分42秒)","5. マイクロアレイデータ (galExpData.csv) の読み込み・レイアウトとスタイルの変更 (3分18秒)","6. 遺伝子発現量の変動の可視化 (5分11秒)","7. 表示領域の移動 (7分43秒)","8. フィルターによるネットワークの選択と抽出 (8分25秒)","9. ノード情報の確認・ネットワーク上の特徴のある部分の抽出 (10分43秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"479","","togotv.2011.073","","20110628","CLC Genomics Workbench でショートリードのマッピングを行う","CLC Genomics Workbench は CLC bio 社によって提供されているゲノム解析ツールの商用パッケージです。生命科学データの解析に使われるいろいろなツールを統合されたインターフェースで扱うことができます。今回は NGS データの解析に欠かせないショートリードのマッピングの方法を紹介します。","NGS,ゲノム,塩基配列,多型,配列解析,発現解析,ソフトウェア","http://youtu.be/ANHYJbn8ka4","http://togotv.dbcls.jp/movie/110628CLC_mapping.mov","http://doi.org/10.7875/togotv.2011.073","http://togotv.dbcls.jp/images/20110628_0.jpg","110628CLC_mapping.mov","thumbnail/20110628_0.jpg","1.データのインポート (33秒)","2.リファレンス配列の入手 (2分9秒)","3.マッピングを行う (4分10秒)","4.新バージョンのマッピングビュアー (6分37秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"478","","togotv.2011.072","","20110627","CLC Workbench シリーズの使い方 〜基本操作編〜","CLC Workbench は CLC bio 社によって提供されているゲノム解析ツールの商用パッケージです。生命科学データの解析に使われるいろいろなツールを統合されたインターフェースで扱うことができます。ここでは基本的な操作方法について解説します。","ゲノム,配列解析,環境設定,ソフトウェア","http://youtu.be/pWSY2jcIeZU","http://togotv.dbcls.jp/movie/110627CLCWorkbench.mov","http://doi.org/10.7875/togotv.2011.072","http://togotv.dbcls.jp/images/20110627_0.jpg","110627CLCWorkbench.mov","thumbnail/20110627_0.jpg","1.ナビゲーションエリアの説明 (33秒)","2.メインビューの説明 (1分19秒)","3.サイドパネルの説明 (3分27秒)","4.ツールボックスの説明 (4分33秒)","5.ナビゲーションエリアからのツールの呼び出し (5分25秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"477","","togotv.2011.071","","20110620","UCSC Table Browserを使い倒す 2011","Table Browserは、米国カリフォルニア大学サンタクルーズ校 (UCSC) が開発、維持しているUCSC Genome Browserの中のコンテンツの一つで、UCSC Genome Browserで閲覧可能なゲノムアノテーションから独自の基準でフィルターをかけ、欲しいデータだけに絞り込んで閲覧することができるサービスです。 今回は、UCSC Genome Browserで提供している転写因子結合サイト (TFBS: Transcription Factor Binding Site) の情報からエストロゲン受容体α (ER-alpha) の結合サイトのみ選んだ上で、sno/miRNAの遺伝子コード領域と重なるものだけを抽出してきてそのゲノム上の領域をUCSC Genome Browserで閲覧するまでのウェブブラウザー上での解析フローと、RefSeqのデータをGTFファイルで取得する方法について説明しています。","ゲノム,配列解析,UCSC,遺伝子,転写因子","http://youtu.be/DAleVp-W6Gk","http://togotv.dbcls.jp/movie/110620table_browser.mov","http://doi.org/10.7875/togotv.2011.071","http://togotv.dbcls.jp/images/20110620_0.jpg","110620table_browser.mov","thumbnail/20110620_0.jpg","1.転写因子結合サイトの情報を選択 (43秒)","2.sno/miRNAの遺伝子コード領域と重なるものだけを抽出 (2分31秒)","3.取得結果をUCSC Genome Browserで閲覧 (3分07秒)","4.RefSeqのデータを選択 (4分08秒)","5.取得結果をGTFファイルで保存 (5分05秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"476","","togotv.2011.070","","20110614","次世代シーケンサによるゲノム解析のノウハウIl","本日の統合TVは、2011年度前期(4〜7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義IIから、理化学研究所免疫・アレルギー科学総合研究センター細胞システムモデル化研究チーム 近藤伸二 先生による「次世代シーケンサによるゲノム解析のノウハウII」をお送りします。","講演,ゲノム,発現解析,NGS","http://youtu.be/EQXRMvfYjyg","http://togotv.dbcls.jp/movie/110614GCOE11_kondo2.mov","http://doi.org/10.7875/togotv.2011.070","http://togotv.dbcls.jp/images/20110614_0.jpg","110614GCOE11_kondo2.mov","thumbnail/20110614_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"475","","togotv.2011.069","","20110613","次世代シーケンサによるゲノム解析のノウハウI","本日の統合TVは、2011年度夏学期(4〜7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義IIから、理化学研究所免疫・アレルギー科学総合研究センター細胞システムモデル化研究チーム 近藤伸二 先生による「次世代シーケンサによるゲノム解析のノウハウI」をお送りします。","講演,ゲノム,発現解析,NGS","http://youtu.be/HeMV3TRALfE","http://togotv.dbcls.jp/movie/110613GCOE11_kondo1.mov","http://doi.org/10.7875/togotv.2011.069","http://togotv.dbcls.jp/images/20110613_0.jpg","110613GCOE11_kondo1.mov","thumbnail/20110613_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"474","","togotv.2011.068","","20110609","パワーポイントの図形描画機能でイラストをつくる方法 その2","スライドやポスター等のプレゼンテーション用資料に「イメージ通りのイラストがみつからない」、「イラストと色が合わなくて浮いてしまう」、そんなときのために パワー・/a>の図形描画機能(オートシェイプ)でイラストをつくる方法を紹介します。 パワーポイントの図形描画機能を使うと簡単なマウス操作で図形を作成することができ、色や形も自由に設定することができます。これを組み合わせてイラストをつくれば、パワーポイント上で配置しながら、スライドに合わせた色や線の変更も可能です。前回の注射器編に続き、第2弾の今回はマウスのイラスト作成を例に、主に曲線の編集を中心にしたパワーポイントの図形描写機能の使い方やイラスト作成におけるtipsを紹介します。","環境設定,可視化,ソフトウェア,パワーポイント","http://youtu.be/xlW1AtsSM_o","http://togotv.dbcls.jp/movie/110609_power_point_illust_2.mov","http://doi.org/10.7875/togotv.2011.068","http://togotv.dbcls.jp/images/20110609_0.jpg","110609_power_point_illust_2.mov","thumbnail/20110609_0.jpg","1. 写真を挿入する (1分09秒)","2. 曲線で輪郭をなぞる (1分57秒)","3. 頂点を編集する (3分29秒)","4. 色をつける (7分27秒)","5. 前後を調整する (8分58秒)","6. グループ化して完成 (9分47秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"473","","togotv.2011.067","","20110608","Local BLAST の使い方〜検索実行・オプション編(MacOSX版)〜 2011","今回の統合TVは、自分のコンピュータ(MacOSX)でBLAST検索を実行する方法を紹介します。現在、さまざまなデータベースに対してウェブ経由でBLAST検索を実行できます。しかしながら、実行速度が遅かったり、大量に検索すると怒られたり、自分の望むデータベースがなかったりする場合があります。また、まだ公開していない配列データに対してBLAST検索を実行したい場合もあるかもしれません。そんなときには、自分のコンピュータにBLASTをインストールして、ローカルでBLAST検索を実行してしまいましょう!
今回はその第二弾、”検索実行・オプション編”としてBLASTプログラムの検索実行やオプションを使っての実行方法について紹介します。
検索実行のコマンドとオプションのコマンド例 (legacy blastとblast +の比較)
説明 |
legacy blast |
blast+ |
フォーマット |
formatdb -i データベース名 -p T -o T |
makeblastdb -in データベース名 -dbtype prot -hash_index |
検索(核酸) |
blastall -p blastn -d データベース名 -i 入力ファイル -o 出力ファイル |
blastn -db データベース名 -query 入力ファイル -out 出力ファイル |
検索(アミノ酸) |
blastall -p blastp -d データベース名 -i 入力ファイル -o 出力ファイル |
blastp -db データベース名 -query 入力ファイル -out 出力ファイル |
検索(核酸から翻訳したアミノ酸) |
blastall -p tblastx -d データベース名 -i 入力ファイル -o 出力ファイル |
tblastx -db データベース名 -query 入力ファイル -out 出力ファイル |
複数のデータベースをまとめて検索 |
-blastall -p blastn -d ""database1 database2"" |
blastn -db ""database1 database2"" |
出力アラインメント数 |
-b 数字 |
-num_alignments 数字 |
E-valueの閾値を指定 |
-e 数字 |
-evalue 数字 |
低複雑度領域(フィルタ)のマスク |
-F F(オフにする) |
-seg yes(デフォルトが逆ーオンにする) |
検索結果リスト出力数 |
-v 数字 |
-num_descriptions 数字 |
タブ区切りテキストで出力 |
-m 8 |
-outfmt 6 |
HTML形式で出力 |
-T T |
test.html -html |
使用するCPU数を調節 |
-a 2 |
-num_threads 2 |
","環境設定,配列解析,アミノ酸,塩基配列","http://youtu.be/KaDQcqGQu48","http://togotv.dbcls.jp/movie/110608macstandaloneblast2.mov","http://doi.org/10.7875/togotv.2011.067","http://togotv.dbcls.jp/images/20110608_0.jpg","110608macstandaloneblast2.mov","thumbnail/20110608_0.jpg","1. アミノ酸配列で検索実行する(8秒)","2. 塩基配列で検索実行する。(3分19秒)","3. 塩基配列から翻訳したアミノ酸配列を検索実行する。(5分52秒)","4. 出力に含まれるアラインメント数を指定する。(7分40秒)","5. 検索結果リストとして出力する数を指定する。(8分33秒)","6. E-valueの閾値を指定する。(8分52秒)","7. 低複雑度領域のマスクをオンにする。(9分27秒)","8. 結果をタブ区切りテキストとして出力する。(10分20秒)","9. 結果をHTML形式で出力する。(11分25秒)","10. 使用するCPU数を調節する。(11分59秒)","11. 複数のデータベースをまとめて検索する。(12分27秒)","12. オプションを組み合わせて実行する。(14分23秒)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"472","","togotv.2011.066","","20110607","PSI-BLASTで類縁の配列を調べ倒す 2011","PSI-BLSTは、BLAST検索の結果を利用して検索を繰り返して行くことで、配列自体の類似度が低くくても機能的に関連している配列を見つけ出すことができる非常に強力な検索方法です。機能未知のアミノ酸配列の機能を推定するために、BLAST検索がよく使われます。しかし、ヒットしてきた配列に有用なアノテーションが付いておらず、機能の推定が難しい場合があります。こんなときに、PSI-BLASTを試してみましょう。PSI-BLASTではBLAST検索でヒットしてきた類似配列から、部位特異的スコア行列(PSSM: Position Specific Scoring Matrix)を作成して類縁のアミノ酸配列を検索します。BLASTでヒットしてきた配列の""特徴""を使ってBLAST検索を行うため、配列自体の類似性が低くても、配列の特徴が類似しているアミノ酸配列を得ることができます。このようにして得られた遠縁のアミノ酸から有用な情報が得られることもあります。","アミノ酸,配列解析,ウェブツール","http://youtu.be/tFaUyaEtSD0","http://togotv.dbcls.jp/movie/110607PSI-BLAST.mov","http://doi.org/10.7875/togotv.2011.066","http://togotv.dbcls.jp/images/20110607_0.jpg","110607PSI-BLAST.mov","thumbnail/20110607_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"471","","togotv.2011.065","","20110606","siDirectでsiRNAを設計する 2011","siRNA(「エスアイアールエヌエー」と読みます、small interfering RNAの略です)を用いてRNAi(RNA
interference)を起こして目的のmRNAをノックダウンすることが哺乳類に対してもできることが最近わかってきました。
siDirect(「エスアイダイレクト」と読みます)はそのsiRNAをデザインする日本発のツールです。インターフェースや説明書きがすべて英語となっており日本語化されていないので素人にはなじみにくいかもしれませんが、設計したsiRNAが他の遺伝子に影響を及ぼさないか他の遺伝子配列にたいする配列類似性検索も同時に行うことができ、便利なツールとなっています。 ただ、そのsiRNAが実際に効いたかどうか等の実験結果は反映されていないのが残念な点です(効いたかどうか確かめたもの(verified)を集めたsiRNAがライブラリという形で売られていますが自分の目的とする細胞(cell line)や組織で効くかどうかはまた別問題です)。","塩基配列,ウェブツール","http://youtu.be/RXEmD49LVxU","http://togotv.dbcls.jp/movie/110606sidirect.mov","http://doi.org/10.7875/togotv.2011.065","http://togotv.dbcls.jp/images/20110606_0.jpg","110606sidirect.mov","thumbnail/20110606_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"470","","togotv.2011.064","","20110603","Cytoscape を使い倒す!〜基本操作編〜","Cytoscapeとは、生物学上のパスウェイや分子間相互作用ネットワークを可視化&解析できるフリーソフトです。もともとは生物学的ネットワークのためにオブジェクト指向型言語Javaで書かれたソフトですが、もちろん生物以外を対象にすることもできます。手軽な操作でネットワークの画像を出力することができ、また解析をすることもできます。外部のデータベースから情報を取得したり、ネットワークに関する情報を統合することもできます。 今回は、その導入方法と基本的な使い方について説明します。 ","パスウェイ解析,可視化,発現解析,ソフトウェア","http://youtu.be/-XBuoQgCxE4","http://togotv.dbcls.jp/movie/110603cytoscape.mov","http://doi.org/10.7875/togotv.2011.064","http://togotv.dbcls.jp/images/20110603_0.jpg","110603cytoscape.mov","thumbnail/20110603_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"469","","togotv.2011.063","","20110528","CLC Workbench シリーズの使い方〜導入方法編〜","CLC Workbench シリーズは CLC bio 社によって提供されているゲノム解析ツールの商用パッケージです。生命科学データの解析に使われるいろいろなツールを統合されたインターフェースで扱うことができます。ここではその導入方法について解説します。2011年3月11日の東日本大震災を受けて、2011年5月現在 CLC bio ではCLC Main Workbench のライセンスの日本向け無償提供を実施しています。これについては CLC バイオジャパンにお問い合せいただけばライセンスを取得方法を知ることができるでしょう。","ゲノム,配列解析,環境設定,ソフトウェア","http://youtu.be/-UxcetgmCJ4","http://togotv.dbcls.jp/movie/110528CLCWorkbench.mov","http://doi.org/10.7875/togotv.2011.063","http://togotv.dbcls.jp/images/20110528_0.jpg","110528CLCWorkbench.mov","thumbnail/20110528_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"468","","togotv.2011.062","","20110527","Biomartを使い倒す〜遺伝子の上流配列を取得する〜 2011","biomartは、the Ontario Institute for Cancer Research (OiCR) と the European Bioinformatics Institute (EBI) が共同で開発しているクエリ指向型データ管理システムです。 今回は、Ensemblのbiomartを用いて、全ての遺伝子の転写開始点から上流の配列1kbをマウスゲノムから抽出してFASTA形式で得る方法について説明しています。","ゲノム,遺伝子,塩基配列","http://youtu.be/k2e6n6voFWI","http://togotv.dbcls.jp/movie/110527biomart.mov","http://doi.org/10.7875/togotv.2011.062","http://togotv.dbcls.jp/images/20110527_0.jpg","110527biomart.mov","thumbnail/20110527_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"467","","togotv.2011.061","","20110520","WindowsでUNIX! 1. Cygwin インストール編","Cygwinは、Windows上で、Unix系の便利なプログラムを利用するためのツールです。具体的には、マイクロアレイのデータを簡単に編集するなどのテキスト編集や、正規表現を用いた柔軟なファイル操作、そして、プログラム環境やツールの簡単なインストールなど、利用性は多岐に富んでいます。今回は、Cygwinのインストール方法を、特に便利なプログラムの紹介を交えて、説明していきます。","環境設定,プログラミング,UNIX","http://youtu.be/kMjD6KWdqxM","http://togotv.dbcls.jp/movie/110520Cygwin_install_instruction.mov","http://doi.org/10.7875/togotv.2011.061","http://togotv.dbcls.jp/images/20110520_0.jpg","110520Cygwin_install_instruction.mov","thumbnail/20110520_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"466","","togotv.2011.060","","20110509","パワーポイントの図形描画機能でイラストをつくる方法","スライドやポスター等のプレゼンテーション用資料に「イメージ通りのイラストがみつからない」、「イラストと色が合わなくて浮いてしまう」、そんなときのためにパワーポイントの図形描画機能(オートシェイプ)でイラストをつくる方法を紹介します。パワーポイントの図形描画機能を使うと簡単なマウス操作で図形を作成することができ、色や形も自由に設定することができます。これを組み合わせてイラストをつくれば、パワーポイント上で配置しながら、スライドに合わせた色や線の変更も可能です。今回は注射器のイラスト作成を例にパワーポイントの図形描写機能の使い方やイラスト作成におけるtipsを紹介します。","環境設定,可視化,ソフトウェア,パワーポイント","http://youtu.be/fNLPogHgLe0","http://togotv.dbcls.jp/movie/110509_powerpoint_illust_1.mov","http://doi.org/10.7875/togotv.2011.060","http://togotv.dbcls.jp/images/20110509_0.jpg","110509_powerpoint_illust_1.mov","thumbnail/20110509_0.jpg","1. 写真を挿入する (2:00)","2. 図形で輪郭をつくる (2:46)
","3. 配置を調整する (4:39)","4. 色をつける (5:10)","5. 前後を調整する (5:42)","6. 細かい部分の修正 (8:06)","7. グループ化して完成 (10:01)","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"465","","togotv.2011.059","","20110426","Cell Montage を使って遺伝子発現プロファイルを検索する","Cell Montage は、産総研 で開発された、遺伝子発現データベースから発現パターンの類似した細胞や組織を検索するシステムです。これを用いるとマイクロアレイなどから取られた発現データと発現パターンの似たものを検索することができます。順位相関係数を用いて類似度を計算することで、異なるプラットフォームのデータを比較することが可能になっています。","遺伝子,発現解析,データベース","http://youtu.be/O9mzY59Z4HA","http://togotv.dbcls.jp/movie/110426CellMontage.mov","http://doi.org/10.7875/togotv.2011.059","http://togotv.dbcls.jp/images/20110426_0.jpg","110426CellMontage.mov","thumbnail/20110426_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"464","","togotv.2011.058","","20110425","TogoWS RESTサービスを使い倒す 2011","RESTとは、DBCLSが統合ホームページで提供しているTogoWSにおいて提供されているサービスの一つです。TogoWSでは、ウェブサービスによって DDBJ, KEGG, PDBj, CBRCの4センターをバーチャルに統合し、国内の主要データベースと解析サービスを透過的に利用可能にする取り組みを行っています。これまで4センターで独自に開発されてきたウェブサービスの API を、ライフサイエンス統合データベースセンターにおいて一元的に利用できるようにし、相互に連携するために必要な追加機能を提供することで、ワークフローを容易に構築できる環境をユーザに提供します。このRESTサービスでは、URLにデータベース名やそのエントリを追加するだけで簡単にそのデータベースから欲しい情報を得ることが出来ます。また特定の情報だけを選んで取得することも出来ます。","文献検索,DBCLS,データベース,遺伝子,タンパク質","http://youtu.be/EvL09NVFY1k","http://togotv.dbcls.jp/movie/110425rest.mov","http://doi.org/10.7875/togotv.2011.058","http://togotv.dbcls.jp/images/20110425_0.jpg","110425rest.mov","thumbnail/20110425_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"463","","togotv.2011.057","","20110422","NCBI Gene Expression Omnibus(GEO)にマイクロアレイデータを登録(Submit)する","NCBI GEO(Gene Expression Omnibus; 「ジーイーオー」あるいは「ゲオ」と発音します)はNCBIが提供・維持管理している遺伝子発現情報のデータベースです。GEOには、主にマイクロアレイ実験で得られたデータが日々蓄積されており、その登録データ数は世界最大です。それらの中から、自分の興味のある発現データセットや遺伝子プロファイルを検索することができるだけでなく、それらの生データを自由にダウンロードすることが可能です。 今回は、自分のマイクロアレイデータをGEOに登録する方法について説明しています。","発現解析,遺伝子,NCBI,GEO","http://youtu.be/vFaKstYvTUM","http://togotv.dbcls.jp/movie/110422GEOsubmit.mov","http://doi.org/10.7875/togotv.2011.057","http://togotv.dbcls.jp/images/20110422_0.jpg","110422GEOsubmit.mov","thumbnail/20110422_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"462","","togotv.2011.056","","20110420","Local BLAST の使い方〜導入・準備編(MacOSX版)〜 2011","今回の統合TVは、自分のコンピュータ(MacOSX)でBLAST検索を実行する方法を紹介します。現在、さまざまなデータベースに対してウェブ経由でBLAST検索を実行できます。しかしながら、実行速度が遅かったり、大量に検索すると怒られたり、自分の望むデータベースがなかったりする場合があります。また、まだ公開していない配列データに対してBLAST検索を実行したい場合もあるかもしれません。そんなときには、自分のコンピュータにBLASTをインストールして、ローカルでBLAST検索を実行してしまいましょう!今回はその第一弾、”導入・準備編”BLASTプログラムのインストール方法やBLAST検索用のデータベース作成方法について紹介します。
また、Local BLASTは、standalone BLASTとも言われています。","環境設定,アミノ酸,塩基配列,配列解析","http://youtu.be/FIZYXqr0AFQ","http://togotv.dbcls.jp/movie/110420macstandaloneblast1.mov","http://doi.org/10.7875/togotv.2011.056","http://togotv.dbcls.jp/images/20110420_0.jpg","110420macstandaloneblast1.mov","thumbnail/20110420_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"461","","togotv.2011.055","","20110413","Ensemblの使い方 〜配列を取得する〜 2011","Ensembl Genome Browserは、 The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。前回はEnsembl tipsの第一弾として配列の比較方法について紹介しましたが、今回はその第二弾としてEnsemblを使った「配列の取得」方法について紹介しています。塩基配列やcDNA配列、アミノ酸配列は研究の多くの場面で必要となりますが、今回紹介するちょっとした使い方を知るだけで自分の欲しい配列や領域をこれまで以上に簡単に取得することができるかもしれません。 ","ゲノム,遺伝子,アミノ酸,塩基配列,Ensembl","http://youtu.be/IwAPino40KQ","http://togotv.dbcls.jp/movie/110413ensembl.mov","http://doi.org/10.7875/togotv.2011.055","http://togotv.dbcls.jp/images/20110413_0.jpg","110413ensembl.mov","thumbnail/20110413_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"460","","togotv.2011.054","","20110406","統合TV Curatedを使い倒す","はじめに、「統合TV」とはライフサイエンス統合データベースセンター(DBCLS)が発信する生命科学分野の有用なデータベース(DB)やウェブツールの活用法を動画で紹介するウェブサイトです。今回紹介する「統合TV Curated」は、「統合TV」の番組の情報をうまく整理し、素早く情報にたどりつけるようにまとめられた=「Curated」なサイトです。","DBCLS,情報収集","http://youtu.be/ns4Vz4dhhKg","http://togotv.dbcls.jp/movie/110406curated.mov","http://doi.org/10.7875/togotv.2011.054","http://togotv.dbcls.jp/images/20110406_0.jpg","110406curated.mov","thumbnail/20110406_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"459","","togotv.2011.053","","20110401","Reactomeを使い倒す〜2・Reactomeへのマッピング〜 2011","Reactomeはヒトの生体中での反応やパスウェイを整備したデータベースです。それぞれの分野の専門家が編集しているため、信頼性の高いデータが得られます。代謝以外にもシグナル伝達や膜輸送、感染など様々なパスウェイが扱われています。DNAマイクロアレイやプロテオーム解析、メタボローム解析の結果を解釈する際に利用できます。今回はReactomeを使って実験データを解析する方法を紹介します。","可視化,パスウェイ解析,化合物,遺伝子,データベース,メタボローム","http://youtu.be/QmdvlDbrqOA","http://togotv.dbcls.jp/movie/110401reactome2.mov","http://doi.org/10.7875/togotv.2011.053","http://togotv.dbcls.jp/images/20110401_0.jpg","110401reactome2.mov","thumbnail/20110401_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"458","","togotv.2011.052","","20110328","文献管理システム TogoDocの使い方","TogoDocはDBCLSが開発・提供している文献管理システムです。 PubMed IDのリストを本システムに登録することで、 興味を持ちそうな関連文献を取得したり、各書誌情報に任意のタグを付けて整理することができます。またPubMed検索結果から適宜書誌情報を登録や、あるいはRIS形式のファイルをアップロードすることでも可能です。 さらに、普段お使いのPC (Win/Mac) にオンラインジャーナルからダウンロードした論文のPDFファイルを効率よく整理できるフリーの文献管理ソフト TogoDoc Client と連携して文献情報を管理することも可能です。 今回の番組では登録、検索、タグ管理、文献の推薦といったサービスの基本的な操作についてソフトウエア、ウェブの両方について動画で解説を交えて紹介しております。","DBCLS,文献検索,情報収集","http://youtu.be/hfmlIo1I9GI","http://togotv.dbcls.jp/movie/110328togodoc.mov","http://doi.org/10.7875/togotv.2011.052","http://togotv.dbcls.jp/images/20110328_0.jpg","110328togodoc.mov","thumbnail/20110328_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"457","","togotv.2011.051","","20110327","文献情報を分析する仕事@AJACS本郷8","本日の統合TVは、2011年3月18日に開催された、統合データベース講演会: AJACS本郷8から、@y_benjo氏による「文献情報を分析する仕事」をお送りします。","講演, AJACS","http://youtu.be/d02KzXjbrRM","http://togotv.dbcls.jp/movie/110327AJACS25_benjo.mov","http://doi.org/10.7875/togotv.2011.051","http://togotv.dbcls.jp/images/20110327_0.jpg","110327AJACS25_benjo.mov","thumbnail/20110327_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"456","","togotv.2011.050","","20110326","文献データベースと実験データベースをつなげる仕事@AJACS本郷8","本日の統合TVは、2011年3月18日に開催された、統合データベース講演会: AJACS本郷8から、@meguu氏による「文献データベースと実験データベースをつなげる仕事」をお送りします。","講演, AJACS","http://youtu.be/MLVnbvtlblI","http://togotv.dbcls.jp/movie/110326AJACS25_meguu.mov","http://doi.org/10.7875/togotv.2011.050","http://togotv.dbcls.jp/images/20110326_0.jpg","110326AJACS25_meguu.mov","thumbnail/20110326_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"455","","togotv.2011.049","","20110325","国内外のデータベースを網羅する仕事@AJACS本郷8","本日の統合TVは、2011年3月18日に開催された、統合データベース講演会: AJACS本郷8から、@wakuteka氏による「国内外のデータベースを網羅する仕事」をお送りします。","講演, AJACS","http://youtu.be/CQc8qyK4bHE","http://togotv.dbcls.jp/movie/110325AJACS25_wakuteka.mov","http://doi.org/10.7875/togotv.2011.049","http://togotv.dbcls.jp/images/20110325_0.jpg","110325AJACS25_wakuteka.mov","thumbnail/20110325_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"454","","togotv.2011.048","","20110324","次世代シーケンサのデータ解析 技術開発編@AJACS本郷8","本日の統合TVは、2011年3月18日に開催された、統合データベース講演会: AJACS本郷8から、@mickey24氏による「次世代シーケンサのデータ解析 技術開発編」をお送りします。","講演, AJACS,NGS","http://youtu.be/-VR7FifrThc","http://togotv.dbcls.jp/movie/110324AJACS25_mickey24.mov","http://doi.org/10.7875/togotv.2011.048","http://togotv.dbcls.jp/images/20110324_0.jpg","110324AJACS25_mickey24.mov","thumbnail/20110324_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"453","","togotv.2011.047","","20110323","次世代シーケンサのデータ解析 戦略立案編@AJACS本郷8","本日の統合TVは、2011年3月18日に開催された、統合データベース講演会: AJACS本郷8から、@iNut氏による「次世代シーケンサのデータ解析 戦略立案編」をお送りします。","講演, AJACS,NGS","http://youtu.be/7KwohMA6LSI","http://togotv.dbcls.jp/movie/110323AJACS25_inut.mov","http://doi.org/10.7875/togotv.2011.047","http://togotv.dbcls.jp/images/20110323_0.jpg","110323AJACS25_inut.mov","thumbnail/20110323_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"452","","togotv.2011.046","","20110322","ライフサイエンス分野のイラスト集を作る仕事@AJACS本郷8","本日の統合TVは、2011年3月18日に開催された、統合データベース講演会: AJACS本郷8から、@riv7氏による「ライフサイエンス分野のイラスト集を作る仕事」をお送りします。","講演, AJACS","http://youtu.be/yDN-rEB5VEo","http://togotv.dbcls.jp/movie/110322AJACS25_riv7.mov","http://doi.org/10.7875/togotv.2011.046","http://togotv.dbcls.jp/images/20110322_0.jpg","110322AJACS25_riv7.mov","thumbnail/20110322_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"451","","togotv.2011.045","","20110321","統合TVのコンテンツを作る仕事@AJACS本郷8","本日の統合TVは、2011年3月18日に開催された、統合データベース講演会: AJACS本郷8から、@maoringo氏による「統合TVのコンテンツを作る仕事」をお送りします。","講演, AJACS","http://youtu.be/NdXv6HlkZaY","http://togotv.dbcls.jp/movie/110321AJACS25_maoringo.mov","http://doi.org/10.7875/togotv.2011.045","http://togotv.dbcls.jp/images/20110321_0.jpg","110321AJACS25_maoringo.mov","thumbnail/20110321_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"450","","togotv.2011.044","","20110320","統合データベースプロジェクトと統合牧場@AJACS本郷8","本日の統合TVは、2011年3月18日に開催された、統合データベース講演会: AJACS本郷8から、@bonohu氏による「統合データベースプロジェクトと統合牧場」をお送りします。","講演, AJACS","http://youtu.be/T4eVR3UB1Y4","http://togotv.dbcls.jp/movie/110320AJACS25_bono.mov","http://doi.org/10.7875/togotv.2011.044","http://togotv.dbcls.jp/images/20110320_0.jpg","110320AJACS25_bono.mov","thumbnail/20110320_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"449","","togotv.2011.043","","20110308","GXP and GMount: Two small building blocks for large-scale parallel data","In this video, Kenjiro Taura who is Associate Professor at Department of Information and Communication Engineering, Graduate School of Information Science and Technology, The University of Tokyo talks about parallel data processing. The talk has been at Workshop on Parallel and Distributed Processing of Large Genome Data organized by GCOE Program: Deciphering Genome Sphere from Genome Big Bang.","講演,English","http://youtu.be/tLcU3B-Vg9Q","http://togotv.dbcls.jp/movie/110308GCOE_Taura.mov","http://doi.org/10.7875/togotv.2011.043","http://togotv.dbcls.jp/images/20110308_0.jpg","110308GCOE_Taura.mov","thumbnail/20110308_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"448","","togotv.2011.042","","20110307","Large-scale Text Mining for Biological Data","In this video, Goran Nenadic who is a Senior Lecturer (Associate Professor) in the School of Computer Science, University of Manchester and a group leader in the Manchester Interdisciplinary BioCenter talks about text mining from biomedical literature. The talk has been at Workshop on Parallel and Distributed Processing of Large Genome Data organized by GCOE Program: Deciphering Genome Sphere from Genome Big Bang.","講演,English","http://youtu.be/hzZxzNiA27U","http://togotv.dbcls.jp/movie/110307GCOE_Goran.mov","http://doi.org/10.7875/togotv.2011.042","http://togotv.dbcls.jp/images/20110307_0.jpg","110307GCOE_Goran.mov","thumbnail/20110307_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"447","","togotv.2011.041","","20110306","How to make a monkey: functional adaptation in the primate genome","In this video, Rutger Vos who is Marie Curie fellow at the University of Reading talks about evolutionary bioinformatics of the primate. The talk has been at Workshop on Parallel and Distributed Processing of Large Genome Data organized by GCOE Program: Deciphering Genome Sphere from Genome Big Bang.","講演,English","http://youtu.be/VnIJ1XhsBkQ","http://togotv.dbcls.jp/movie/110306GCOE_Rutger.mov","http://doi.org/10.7875/togotv.2011.041","http://togotv.dbcls.jp/images/20110306_0.jpg","110306GCOE_Rutger.mov","thumbnail/20110306_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"446","","togotv.2011.040","","20110305","BioMart: data federation framework","In this video, Arek Kasprzyk who is BioMart project leader at Ontario Institute for Cancer Research (OICR) talks about BioMart, which is a query-oriented data management system developed jointly by the OICR and the European Bioinformatics Institute (EBI). The talk has been at Workshop on Parallel and Distributed Processing of Large Genome Data organized by GCOE Program: Deciphering Genome Sphere from Genome Big Bang.","講演,English","http://youtu.be/L-MCOpEldZc","http://togotv.dbcls.jp/movie/110305GCOE_Arek.mov","http://doi.org/10.7875/togotv.2011.040","http://togotv.dbcls.jp/images/20110305_0.jpg","110305GCOE_Arek.mov","thumbnail/20110305_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"445","","togotv.2011.039","","20110304","Managing Very Large Genome Databases","In this video, Taro L. Saito who is Assistant Professor at Department of Computational Biology, Graduate School of Frontier Science, The University of Tokyo talks about introduction of the workshop and management of large genome database. The talk has been at Workshop on Parallel and Distributed Processing of Large Genome Data organized by GCOE Program: Deciphering Genome Sphere from Genome Big Bang.","講演,English","http://youtu.be/ggXmdGog0ik","http://togotv.dbcls.jp/movie/110304GCOE_taro.mov","http://doi.org/10.7875/togotv.2011.039","http://togotv.dbcls.jp/images/20110304_0.jpg","110304GCOE_taro.mov","thumbnail/20110304_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"444","","togotv.2011.038","","20110302","ESTデータベース Entrez Unigeneを使い倒す 2011","NCBIが提供するデータベースの1つにUniGeneがあります。Unigeneは遺伝子のESTデータベースであり、様々な遺伝子のEST配列を取得することが出来ます。ESTとは「expressed sequence tag」の略でRNAの一部に当たる短い配列であり、転写産物の「目印」として使われています。また、検索した生物と他の生物種のタンパク質配列を比較することで機能を類推したり、ESTが生物の体のどの部位で得られているかなども知ることが出来ます。今回は、マウスのsox2遺伝子に関して調べた場合を例としてUniGeneの使い方を紹介しています。","配列解析,遺伝子,NCBI","http://youtu.be/_4vLDhV1fjw","http://togotv.dbcls.jp/movie/110302unigene.mov","http://doi.org/10.7875/togotv.2011.038","http://togotv.dbcls.jp/images/20110302_0.jpg","110302unigene.mov","thumbnail/20110302_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"443","","togotv.2011.037","","20110301","ライフサイエンス新着論文レビュー FirstAuthor's を使い倒す","新着論文レビューとは,トップジャーナルに掲載された日本人を著者とする生命科学分野の論文について,論文の著者自身の執筆による日本語のレビューを,だれでも自由に閲覧・利用できるよう,いち早く公開するサイトです.皆さんもトップジャーナルに掲載された論文を日本語で読んでみましょう.また,あなたの論文がトップジャーナルに掲載された際には,「新着論文レビュー」の執筆にご協力をお願いいたします!","DBCLS,文献検索","http://youtu.be/bVFqQhjjw4U","http://togotv.dbcls.jp/movie/110301FirstAuthors.mov","http://doi.org/10.7875/togotv.2011.037","http://togotv.dbcls.jp/images/20110301_0.jpg","110301FirstAuthors.mov","thumbnail/20110301_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"442","","togotv.2011.036","","20110227","Reactomeを使い倒す〜1・基本編〜 2011","Reactomeはヒトの生体中での反応やパスウェイを整備したデータベースです。それぞれの分野の専門家が編集しているため、信頼性の高いデータが得られます。代謝以外にもシグナル伝達や膜輸送、感染など様々なパスウェイが扱われています。DNAマイクロアレイやプロテオーム解析、メタボローム解析の結果を解釈する際に利用できます。今回はパスウェイの閲覧方法を紹介します。","可視化,パスウェイ解析,化合物,データベース,遺伝子,メタボローム","http://youtu.be/u6pSQ5cxgiQ","http://togotv.dbcls.jp/movie/110227reactome.mov","http://doi.org/10.7875/togotv.2011.036","http://togotv.dbcls.jp/images/20110227_0.jpg","110227reactome.mov","thumbnail/20110227_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"441","","togotv.2011.035","","20110226","DDBJ Read Annotation Pipelineによるde novo Assembly解析","DDBJ Read Annotation Pipelineは国立遺伝学研究所のDDBJが開発・提供している新型シーケンサの出力データを自動で解析してくれるツールです。 このツールの特徴として、ボタン操作とテキスト入力のみで解析可能,論文用の基本統計量や図を自動生成,国立遺伝学研究所のスーパーコンピュータを利用して高速化,などが挙げられます。 現在、Reference Genome Mappingとde novo Assembly解析を行なうことができます。今日からはじめるDDBJ Read Annotation PipelineではReference Genome Mappingについて紹介しましたが、今回の番組ではde novo Assembly解析の方法を紹介しています。","DBCLS,ゲノム,配列解析,塩基配列,NGS,スパコン,パイプライン","http://youtu.be/2kQahb7SpkM","http://togotv.dbcls.jp/movie/110226-DRA-analysis-de_novo.mov","http://doi.org/10.7875/togotv.2011.035","http://togotv.dbcls.jp/images/20110226_0.jpg","110226-DRA-analysis-de_novo.mov","thumbnail/20110226_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"440","","togotv.2011.034","","20110225","Local BLAST の使い方〜検索実行・オプション編〜 2011","今回の統合TVは、自分のコンピュータでBLAST検索を実行する方法を紹介します。
現在、さまざまなデータベースに対してウェブ経由でBLAST検索を実行できます。
しかしながら、実行速度が遅かったり、大量に検索すると怒られたり、自分の望むデータベースがなかったりする場合があります。また、まだ公開していない配列データに対してBLAST検索を実行したい場合もあるかもしれません。
そんなときには、自分のコンピュータにBLASTをインストールして、ローカルでBLAST検索を実行してしまいましょう!今回はその第二弾、”検索実行・オプション編”としてBLASTプログラムの検索実行やオプションをを使っての実行方法について紹介します。
検索実行では前回作成した酵母のアミノ酸配列データベースに対して、サンプル配列と類似の配列を検索しています。オプションの実行では、さまざまなオプションを使って検索結果をしぼったり、表示形式を変更したりする方法について紹介します。
また、Local BLASTは、standalone BLASTとも言われています。
検索実行のコマンドとオプションのコマンド例 (legacy blastとblast +の比較)
説明 |
legacy blast |
blast+ |
フォーマット |
formatdb -i データベース名 -p T -o T |
makeblastdb -in データベース名 -dbtype prot -hash_index |
検索(核酸) |
blastall -p blastn -d データベース名 -i 入力ファイル -o 出力ファイル |
blastn -db データベース名 -query 入力ファイル -out 出力ファイル |
検索(アミノ酸) |
blastall -p blastp -d データベース名 -i 入力ファイル -o 出力ファイル |
blastp -db データベース名 -query 入力ファイル -out 出力ファイル |
検索(核酸から翻訳したアミノ酸) |
blastall -p tblastx -d データベース名 -i 入力ファイル -o 出力ファイル |
tblastx -db データベース名 -query 入力ファイル -out 出力ファイル |
複数のデータベースをまとめて検索 |
-blastall -p blastn -d ""database1 database2"" |
blastn -db ""database1 database2"" |
出力アラインメント数 |
-b 数字 |
-num_alignments 数字 |
E-valueの閾値を指定 |
-e 数字 |
-evalue 数字 |
低複雑度領域(フィルタ)のマスク |
-F F(オフにする) |
-seg yes(デフォルトが逆ーオンにする) |
検索結果リスト出力数 |
-v 数字 |
-num_descriptions 数字 |
タブ区切りテキストで出力 |
-m 8 |
-outfmt 6 |
HTML形式で出力 |
-T T |
test.html -html |
使用するCPU数を調節 |
-a 2 |
-num_threads 2 |
","環境設定,配列解析,アミノ酸,塩基配列","http://youtu.be/Fd1DXTjt_rE","http://togotv.dbcls.jp/movie/110225Local_BLAST2.mov","http://doi.org/10.7875/togotv.2011.034","http://togotv.dbcls.jp/images/20110225_0.jpg","110225Local_BLAST2.mov","thumbnail/20110225_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"439","","togotv.2011.033","","20110224","BioMart を用いて Affymetrix と Agilent のマイクロアレイのプローブ ID 対応表を作成する 2011","Biomartは、the Ontario Institute forCancer Research (OiCR) とthe European Bioinformatics Institute (EBI) が共同で開発しているクエリ指向型データ管理システムです。 今回は、この BioMart を用いてAffymetrix と Agilent のプローブ ID 対応表を作成し、タブ区切りファイル(TSV)として保存する方法を紹介します。","ゲノム,遺伝子,データベース","http://youtu.be/G4w6ZIEBnF8","http://togotv.dbcls.jp/movie/110224BioMart_ArrayID.mov","http://doi.org/10.7875/togotv.2011.033","http://togotv.dbcls.jp/images/20110224_0.jpg","110224BioMart_ArrayID.mov","thumbnail/20110224_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"438","","togotv.2011.032","","20110223","生命科学データベース横断検索を使い倒す 2011","DBCLSが統合ホームページで提供している生命科学データベース横断検索では、散在する生命科学分野の分子データベースを、特許や文献とあわせて一括して検索できるGoogle ライクなサービスです。 研究関連の情報をいろいろな情報ソースから入手したいときや、新規分野のレビュー情報の探索に種類の異なる国内外のデータベースを一括してキーワード検索することが可能なので、それぞれのデータベースサイトにいく手間が省けます。ライフサイエンス辞書を搭載しているので、キーワードを日本語→英語、英語→日本語に翻訳して一括で検索できるのが大きな特徴の一つです。また分子データベースと総説などとを一度に検索できるので、知りたいことの理解を深められます。特許と分子データベースとを同時に検索できる国内初のサービスです。また、さらに「蛋白質核酸酵素」のバックナンバーやゲノム関連の研究報告書、日本生物物理学会や日本農芸化学会の要旨など、これまではあまり重視されてこなかった日本語で書かれた研究情報の横断検索にも力を入れています。","DBCLS,文献検索,遺伝子,特許,情報収集","http://youtu.be/GvRy9uUXrbE","http://togotv.dbcls.jp/movie/110223lsdbsearch.mov","http://doi.org/10.7875/togotv.2011.032","http://togotv.dbcls.jp/images/20110223_0.jpg","110223lsdbsearch.mov","thumbnail/20110223_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"437","","togotv.2011.031","","20110218","遺伝子のRefSeq IDを調べる 2011","RefSeqとは、Reference Sequenceの略で、NCBIが提供する配列解析に使うための文字通り""reference""(リファレンス)となるべき配列データベースのことです。その配列の多くは核酸配列データベースのDDBJやEMBL、GenBank由来であり、それらの中からもっとも代表としてふさわしい(参照の基準となる)ものが、目で見て選ばれています。今回の番組では、このRefSeqデータベースから自分の興味ある遺伝子のRefSeq IDを調べ、そのmRNA配列とアミノ酸配列を取得する方法について説明しています。","遺伝子,塩基配列,タンパク質,NCBI","http://youtu.be/AFKXi8pO4Zc","http://togotv.dbcls.jp/movie/110218RefSeq.mov","http://doi.org/10.7875/togotv.2011.031","http://togotv.dbcls.jp/images/20110218_0.jpg","110218RefSeq.mov","thumbnail/20110218_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"436","","togotv.2011.030","","20110217","microRNA.orgの使い方","microRNA.orgは、microRNAのターゲット予測結果と発現プロファイルをまとめたサイトです。ターゲット予測はmiRandaというアルゴリズムを用いて行われています。 このページを使うことで、microRNAによって抑制される遺伝子群やあるmRNAをターゲットとする複数のmicroRNAの予測、さまざまな哺乳類細胞における発現プロファイルを見ることができます。","塩基配列,遺伝子,ゲノム,発現解析,データベース","http://youtu.be/2tidXe3KUXY","http://togotv.dbcls.jp/movie/110217microRNA_org.mov","http://doi.org/10.7875/togotv.2011.030","http://togotv.dbcls.jp/images/20110217_0.jpg","110217microRNA_org.mov","thumbnail/20110217_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"435","","togotv.2011.029","","20110216","ClustalWを使い倒す 2011","CLUSTALW(「クラスタルダブル」と読みます)は複数の塩基配列やアミノ酸配列をできるかぎり一致するように並べる(多重(マルチプル)アラインメント)ツールです。アラインメントは、タンパク質ファミリーの保存残基を探したり、二次構造や三次構造の予測を助けたり、PCRプライマーの設計に一役買ったり、分子進化解析の基礎データともなります。
ここでは、例としてヒト、マウス、ブタの各生物種における脂肪代謝遺伝子peroxisome proliferator-activated
receptor(PPAR)ファミリーの塩基配列をサンプル配列として多重アラインメントを行い、系統樹を作成する方法を説明します。","配列解析,塩基配列,ウェブツール,アラインメント","http://youtu.be/DLuZ8wKN2lg","http://togotv.dbcls.jp/movie/110216clustalw.mov","http://doi.org/10.7875/togotv.2011.029","http://togotv.dbcls.jp/images/20110216_0.jpg","110216clustalw.mov","thumbnail/20110216_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"434","","togotv.2011.028","","20110203","超高速シークエンサーと微生物ゲノム研究の今後","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、東京大学大学院新領域創成科学研究科情報生命科学専攻オーミクス情報センター服部正平先生による「超高速シークエンサーと微生物ゲノム研究の今後」をお送りします。","講演,NGS","http://youtu.be/pKmICRUyuxo","http://togotv.dbcls.jp/movie/110203GCOE10_hattori2.mov","http://doi.org/10.7875/togotv.2011.028","http://togotv.dbcls.jp/images/20110203_0.jpg","110203GCOE10_hattori2.mov","thumbnail/20110203_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"433","","togotv.2011.027","","20110202","次世代シークエンサーを活用した細菌叢のゲノム科学","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、東京大学大学院新領域創成科学研究科情報生命科学専攻オーミクス情報センター服部正平先生による「次世代シークエンサーを活用した細菌叢のゲノム科学」をお送りします。","講演,NGS","http://youtu.be/nxktLO_skG4","http://togotv.dbcls.jp/movie/110202GCOE10_hattori1.mov","http://doi.org/10.7875/togotv.2011.027","http://togotv.dbcls.jp/images/20110202_0.jpg","110202GCOE10_hattori1.mov","thumbnail/20110202_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"432","","togotv.2011.026","","20110201","バイオインフォマティクスさらには生物学の進む道","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、東京大学大学院理学系研究科生物化学専攻有田正規先生による「バイオインフォマティクスさらには生物学の進む道」をお送りします。","講演","http://youtu.be/qAeslx5cj84","http://togotv.dbcls.jp/movie/110201GCOE10_arita2.mov","http://doi.org/10.7875/togotv.2011.026","http://togotv.dbcls.jp/images/20110201_0.jpg","110201GCOE10_arita2.mov","thumbnail/20110201_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"431","","togotv.2011.025","","20110131","データ中心時代における知識管理","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、東京大学大学院理学系研究科生物化学専攻有田正規先生による「データ中心時代における知識管理」をお送りします。","講演","http://youtu.be/f9ltuUcRE8s","http://togotv.dbcls.jp/movie/110131GCOE10_arita1.mov","http://doi.org/10.7875/togotv.2011.025","http://togotv.dbcls.jp/images/20110131_0.jpg","110131GCOE10_arita1.mov","thumbnail/20110131_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"430","","togotv.2011.024","","20110130","ライフサイエンス統合データベースの利用法","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、情報・システム研究機構ライフサイエンス統合データベースセンター 河野信による「ライフサイエンス統合データベースの利用法」をお送りします。","講演,データベース","http://youtu.be/Q8IK3IjWKuI","http://togotv.dbcls.jp/movie/110130GCOE10_sk2.mov","http://doi.org/10.7875/togotv.2011.024","http://togotv.dbcls.jp/images/20110130_0.jpg","110130GCOE10_sk2.mov","thumbnail/20110130_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"429","","togotv.2011.023","","20110129","データベース生物学","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、東京大学大学院新領域創成科学研究科情報生命科学専攻高木利久先生による「データベース生物学」をお送りします。","講演,データベース","http://youtu.be/NDP2nkCJVE0","http://togotv.dbcls.jp/movie/110129GCOE10_tt.mov","http://doi.org/10.7875/togotv.2011.023","http://togotv.dbcls.jp/images/20110129_0.jpg","110129GCOE10_tt.mov","thumbnail/20110129_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"428","","togotv.2011.022","","20110127","次世代シークエンサーによるヒトトランスクリプトームの解読","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、東京大学大学院新領域創成科学研究科メディカルゲノム専攻菅野純夫先生による「次世代シークエンサーによるヒトトランスクリプトームの解読」をお送りします。","講演,NGS","http://youtu.be/GfGdjcOa9Sc","http://togotv.dbcls.jp/movie/110127GCOE10_sugano1.mov","http://doi.org/10.7875/togotv.2011.022","http://togotv.dbcls.jp/images/20110127_0.jpg","110127GCOE10_sugano1.mov","thumbnail/20110127_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"427","","togotv.2011.021","","20110126","次世代シーケンシングによるエピゲノム解析","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、東京大学大学院理学系研究科生物化学専攻伊藤隆司先生による「次世代シーケンシングによるエピゲノム解析」をお送りします。","講演,NGS","http://youtu.be/9lZGgdhoWhE","http://togotv.dbcls.jp/movie/110126GCOE10_itoh2.mov","http://doi.org/10.7875/togotv.2011.021","http://togotv.dbcls.jp/images/20110126_0.jpg","110126GCOE10_itoh2.mov","thumbnail/20110126_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"426","","togotv.2011.020","","20110125","次世代シーケンシングによるトランスクリプトーム解析","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、東京大学大学院理学系研究科生物化学専攻伊藤隆司先生による「次世代シーケンシングによるトランスクリプトーム解析」をお送りします。","講演,NGS","http://youtu.be/srV7BbMqCMo","http://togotv.dbcls.jp/movie/110125GCOE10_itoh1.mov","http://doi.org/10.7875/togotv.2011.020","http://togotv.dbcls.jp/images/20110125_0.jpg","110125GCOE10_itoh1.mov","thumbnail/20110125_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"425","","togotv.2011.019","","20110124","新型シーケンサーによる細菌ゲノムの比較解析","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、国立感染症研究所 病原体ゲノム解析研究センター 黒田誠 先生による「新型シーケンサーによる細菌ゲノムの比較解析」をお送りします。","講演,NGS","http://youtu.be/nHu_0vruO-E","http://togotv.dbcls.jp/movie/110124GCOE10_kuroda.mov","http://doi.org/10.7875/togotv.2011.019","http://togotv.dbcls.jp/images/20110124_0.jpg","110124GCOE10_kuroda.mov","thumbnail/20110124_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"424","","togotv.2011.018","","20110123","微生物の病原性関連遺伝子群の情報学的手法による探索","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、かずさDNA研究所 植物ゲノム研究部 植物ゲノム情報研究室 平川英樹 先生による「微生物の病原性関連遺伝子群の情報学的手法による探索」をお送りします。","講演,微生物","http://youtu.be/Wjza8nfCdQo","http://togotv.dbcls.jp/movie/110123GCOE10_hirakawa.mov","http://doi.org/10.7875/togotv.2011.018","http://togotv.dbcls.jp/images/20110123_0.jpg","110123GCOE10_hirakawa.mov","thumbnail/20110123_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"423","","togotv.2011.017","","20110122","細菌の近縁ゲノム配列比較から見るゲノム進化のダイナミックス","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、東京大学大学院新領域創成科学研究科メディカルゲノム専攻小林一三先生による「細菌の近縁ゲノム配列比較から見るゲノム進化のダイナミックス」をお送りします。","講演,ゲノム","http://youtu.be/IMMh-Kfhu4k","http://togotv.dbcls.jp/movie/110122GCOE10_kobayashi.mov","http://doi.org/10.7875/togotv.2011.017","http://togotv.dbcls.jp/images/20110122_0.jpg","110122GCOE10_kobayashi.mov","thumbnail/20110122_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"422","","togotv.2011.016","","20110121","新領域創成科学特別講義:はじめに","本日の統合TVは、2010年度夏学期(5~7月)に開講された、東京大学グローバルCOEプログラム「ゲノム情報ビッグバンから読み解く生命圏」新領域創成科学特別講義Iから、世話人の東京大学大学院新領域創成科学研究科メディカルゲノム専攻小林一三先生による開講の趣旨説明をお送りします。","講演","http://youtu.be/LXcmO4pkA94","http://togotv.dbcls.jp/movie/110121GCOE10_intro.mov","http://doi.org/10.7875/togotv.2011.016","http://togotv.dbcls.jp/images/20110121_0.jpg","110121GCOE10_intro.mov","thumbnail/20110121_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"421","","togotv.2011.015","","20110120","遺伝子発現プロファイルデータベースBioGPSを使い倒す 2011","BioGPS(「バイオジーピーエス」と読みます)はAffymetrix社製のマイクロアレイであるGeneChipを用いたヒト、マウス、ラットのさまざまな組織や細胞(株)における遺伝子発現プロファイルのデータベースです。さらに、検索した遺伝子に対して、種々の外部のデータベースに横断検索した結果を表示することができます。 親切な方がBioGPS(SymAtlas)に登場する組織名の日本語訳の一覧表を作ってくれました。とても参考になります! ","遺伝子,発現解析,データベース","http://youtu.be/TOg6VSwYjJI","http://togotv.dbcls.jp/movie/110120BioGPS.mov","http://doi.org/10.7875/togotv.2011.015","http://togotv.dbcls.jp/images/20110120_0.jpg","110120BioGPS.mov","thumbnail/20110120_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"420","","togotv.2011.014","","20110119","Local BLAST の使い方〜導入・準備編〜 2011","今回の統合TVは、自分のコンピュータでBLAST検索を実行する方法を紹介します。
現在、さまざまなデータベースに対してウェブ経由でBLAST検索を実行できます。
しかしながら、実行速度が遅かったり、大量に検索すると怒られたり、自分の望むデータベースがなかったりする場合があります。また、まだ公開していない配列データに対してBLAST検索を実行したい場合もあるかもしれません。
そんなときには、自分のコンピュータにBLASTをインストールして、ローカルでBLAST検索を実行してしまいましょう!今回はその第一弾、”導入・準備編”としてBLASTプログラムのインストール方法やBLAST検索用のデータベース作成方法について紹介します。","環境設定,配列解析,アミノ酸,塩基配列","http://youtu.be/4onK0s59wxE","http://togotv.dbcls.jp/movie/110119LocalBLAST1.mov","http://doi.org/10.7875/togotv.2011.014","http://togotv.dbcls.jp/images/20110119_0.jpg","110119LocalBLAST1.mov","thumbnail/20110119_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"419","","togotv.2011.013","","20110113","Human Protein Atlas でタンパク質の発現状況を調べる 2011","Human Protein Atlasは、スウェーデンの研究グループが提供しているヒトのタンパク質発現情報データベースです。さまざまなヒトの組織やガン細胞、細胞株におけるタンパク質の発現情報および局在を、特異的抗体を用いて得られた免疫組織化学染色写真をもとに調べることができます。 2011年1月13日現在では10,118個の遺伝子について閲覧可能です。これはヒトの遺伝子のうちの半数以上をカバーしているということです。 また、蛍光抗体法による染色写真も充実しています。 タンパク質の特異的抗体を用いた実験をする前に一度このデータベースで各組織・細胞株での発現状況や局在を調べてみたりすると興味深い知見が得られるかもしれません。","タンパク質,遺伝子,発現解析,データベース","http://youtu.be/h0T6BjmerBg","http://togotv.dbcls.jp/movie/110113HumanProteinAtlas.mov","http://doi.org/10.7875/togotv.2011.013","http://togotv.dbcls.jp/images/20110113_0.jpg","110113HumanProteinAtlas.mov","thumbnail/20110113_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"418","","togotv.2011.012","","20110112","PDBj Mineを使ってタンパク質を検索する","PDBj(Protein Data Bank Japan:日本蛋白質構造データバンク)は、 大阪大学蛋白質研究所が運営する蛋白質・核酸・糖などの生体高分子の立体構造およびそれに関連する二次データのデータベースです。PDBjは、JST-BIRDの支援を受け、米国RCSB、MBRBおよび欧州PDBeと協力して、国際的に統一化されたアーカイブとして運営されており、また様々な解析ツールを提供しているのが特徴です。 今回紹介するMineはXMLに基づいたタンパク質構造検索サービスです。Mineでは様々な条件で検索することができますが、最も単純な検索はPDB IDまたはキーワード(日本語でもOKです)による検索で、PDBjのトップページから直接検索することができます。","タンパク質,可視化,構造解析,PDBj,PDB","http://youtu.be/gGhFBgpegQ0","http://togotv.dbcls.jp/movie/110112PDBj.mov","http://doi.org/10.7875/togotv.2011.012","http://togotv.dbcls.jp/images/20110112_0.jpg","110112PDBj.mov","thumbnail/20110112_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"417","","togotv.2011.011","","20110111","PCRプライマー設計ツール Primer3の使い方 2011","Primer3はPCR用のプライマーを設計するためのツールです。PCR実験成功の可否は、プライマー設計によるところが大きいですが、本ツールはWebブラウザ上で、実験条件に合った様々なパラメータを考慮しながらプライマー設計を行うことが可能です。ここでは例としてヒトの脂肪代謝遺伝子peroxisome proliferator-activated receptor(PPAR) gammaの塩基配列をサンプル配列として、設定可能なパラメータ項目の説明を交えながらPrimer3の使い方を説明します。","塩基配列,遺伝子,ウェブツール","http://youtu.be/W-UNjmhKe4E","http://togotv.dbcls.jp/movie/110111primer3.mov","http://doi.org/10.7875/togotv.2011.011","http://togotv.dbcls.jp/images/20110111_0.jpg","110111primer3.mov","thumbnail/20110111_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"416","","togotv.2011.010","","20110110","生きている自然と非線形科学","本日の統合TVは、2010年9月15日〜17日に開催されたCBI学会2010年大会から、京都大学名誉教授 蔵本由紀先生による特別講演「生きている自然と非線形科学」をお送りします。","講演","http://youtu.be/8CQwUWq6mMQ","http://togotv.dbcls.jp/movie/110110CBI10_kuramoto.mov","http://doi.org/10.7875/togotv.2011.010","http://togotv.dbcls.jp/images/20110110_0.jpg","110110CBI10_kuramoto.mov","thumbnail/20110110_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"415","","togotv.2011.009","","20110109","Extension of DBTSS with SOLEXA sequences and analysis of bi-directional
promoters","本日の統合TVは、2010年9月15日〜17日に開催されたCBI学会2010年大会の口頭セッション「バイオインフォマティクス」から、東京大学医科学研究所
山下理宇先生による「Extension of DBTSS with SOLEXA sequences and analysis of
bi-directional promoters」をお送りします。","講演","http://youtu.be/tIVDs6ornJ0","http://togotv.dbcls.jp/movie/110109CBI10_yamashi.mov","http://doi.org/10.7875/togotv.2011.009","http://togotv.dbcls.jp/images/20110109_0.jpg","110109CBI10_yamashi.mov","thumbnail/20110109_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"414","","togotv.2011.008","","20110108","次世代シーケンサーを使ったアピコンプレクサ原虫のトランスクリプトーム解析","本日の統合TVは、2010年9月15日〜17日に開催されたCBI学会2010年大会の口頭セッション「バイオインフォマティクス」から、東京大学医科学研究所 山下理宇先生による「Extension of DBTSS with SOLEXA sequences and analysis of bi-directional promoters」をお送りします。","講演,NGS","http://youtu.be/QwwmjsPUA0A","http://togotv.dbcls.jp/movie/110108CBI10_wakakuri.mov","http://doi.org/10.7875/togotv.2011.008","http://togotv.dbcls.jp/images/20110108_0.jpg","110108CBI10_wakakuri.mov","thumbnail/20110108_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"413","","togotv.2011.007","","20110107","沖縄先端ゲノムプロジェクトの概要と成果 次世代シーケンサSOLiD4の活用","本日の統合TVは、2010年9月15日〜17日に開催されたCBI学会2010年大会の口頭セッション「バイオインフォマティクス」から、株式会社トロピカルテクノセンター/沖縄先端ゲノムプロジェクト 塚原正俊先生による「沖縄先端ゲノムプロジェクトの概要と成果 次世代シーケンサSOLiD4の活用」をお送りします。","講演,NGS","http://youtu.be/JtbuN7xM5dw","http://togotv.dbcls.jp/movie/110107CBI10_tsukahara.mov","http://doi.org/10.7875/togotv.2011.007","http://togotv.dbcls.jp/images/20110107_0.jpg","110107CBI10_tsukahara.mov","thumbnail/20110107_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"412","","togotv.2011.006","","20110106","機械学習によるバイオマーカ遺伝子発見のためのパラメータ選出法の検討","本日の統合TVは、2010年9月15日〜17日に開催されたCBI学会2010年大会の口頭セッション「バイオインフォマティクス」から、中外製薬株式会社 芦原基起先生による「機械学習によるバイオマーカ遺伝子発見のためのパラメータ選出法の検討」をお送りします。","講演","http://youtu.be/AlLNixvPC24","http://togotv.dbcls.jp/movie/110106CBI10_ashihara.mov","http://doi.org/10.7875/togotv.2011.006","http://togotv.dbcls.jp/images/20110106_0.jpg","110106CBI10_ashihara.mov","thumbnail/20110106_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"411","","togotv.2011.005","","20110105","遺伝子発現の短データ長時系列データにおける周期性検出法","本日の統合TVは、2010年9月15日〜17日に開催されたCBI学会2010年大会の口頭セッション「バイオインフォマティクス」から、産業技術総合研究所 生命情報工学研究センター 富永大介先生による「遺伝子発現の短データ長時系列データにおける周期性検出法」をお送りします。","講演,発現解析","http://youtu.be/4nO82h9pFXA","http://togotv.dbcls.jp/movie/110105CBI10_tominaga.mov","http://doi.org/10.7875/togotv.2011.005","http://togotv.dbcls.jp/images/20110105_0.jpg","110105CBI10_tominaga.mov","thumbnail/20110105_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"410","","togotv.2011.004","","20110104","改良した主鎖二面角エネルギー項を用いたタンパク質の折りたたみシミュレーションによる二次構造形成の傾向","本日の統合TVは、2010年9月15日〜17日に開催されたCBI学会2010年大会の口頭セッション「バイオインフォマティクス」から、名古屋大学大学院理学研究科 榮慶丈先生による「改良した主鎖二面角エネルギー項を用いたタンパク質の折りたたみシミュレーションによる二次構造形成の傾向」をお送りします。","講演,タンパク質","http://youtu.be/Syp_FDJ1nME","http://togotv.dbcls.jp/movie/110104CBI10_sakae.mov","http://doi.org/10.7875/togotv.2011.004","http://togotv.dbcls.jp/images/20110104_0.jpg","110104CBI10_sakae.mov","thumbnail/20110104_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"409","","togotv.2011.003","","20110103","立体構造情報を用いた蛋白質エナジェティクスの解析","本日の統合TVは、2010年9月15日〜17日に開催されたCBI学会2010年大会の口頭セッション「バイオインフォマティクス」から、京都大学生命科学系キャリアパス形成ユニット 石北央先生による「立体構造情報を用いた蛋白質エナジェティクスの解析」をお送りします。","講演,タンパク質","http://youtu.be/EQPrb8RfjM8","http://togotv.dbcls.jp/movie/110103CBI10_ishikita.mov","http://doi.org/10.7875/togotv.2011.003","http://togotv.dbcls.jp/images/20110103_0.jpg","110103CBI10_ishikita.mov","thumbnail/20110103_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"408","","togotv.2011.002","","20110102","大規模遺伝子ネットワーク解析とその応用","本日の統合TVは、2010年9月15日〜17日に開催されたCBI学会2010年大会の口頭セッション「バイオインフォマティクス」から、大阪大学大学院情報科学研究科 松田秀雄先生による招待講演「大規模遺伝子ネットワーク解析とその応用」をお送りします。","講演,パスウェイ解析","http://youtu.be/F5CnLDmE-k0","http://togotv.dbcls.jp/movie/110102CBI10_matsuda.mov","http://doi.org/10.7875/togotv.2011.002","http://togotv.dbcls.jp/images/20110102_0.jpg","110102CBI10_matsuda.mov","thumbnail/20110102_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"407","","togotv.2011.001","","20110101","コンピュータ技術の進歩と科学へのインパクト","本日の統合TVは、2010年9月15日〜17日に開催されたCBI学会2010年大会から、工学院大学情報学部 小柳義夫先生による基調講演「コンピュータ技術の進歩と科学へのインパクト」をお送りします。","講演","http://youtu.be/aObLIGZwLTs","http://togotv.dbcls.jp/movie/110101CBI10_koyanagi.mov","http://doi.org/10.7875/togotv.2011.001","http://togotv.dbcls.jp/images/20110101_0.jpg","110101CBI10_koyanagi.mov","thumbnail/20110101_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"406","","togotv.2010.144","","20101221","公共アーカイブ DRAへのデータの登録方法 part2 ランデータの転送方法","DDBJ Sequence Read Archive (DRA)は次世代シーケンサ(NGS)からの出力データのためのデータアーカイブです。
公共アーカイブ DRAへのデータの登録方法 ではメタデータの登録方法について紹介しました。
今回の動画はSCPによるランデータの転送についてWindows,Macの両方の方法について紹介しています。","ゲノム,遺伝子,NGS,DDBJ","http://youtu.be/VdMT272Pn5k","http://togotv.dbcls.jp/movie/101221DRAmanual_v2.mov","http://doi.org/10.7875/togotv.2010.144","http://togotv.dbcls.jp/images/20101221_0.jpg","101221DRAmanual_v2.mov","thumbnail/20101221_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"405","","togotv.2010.143","","20101220","特許公報を用いた自然言語処理による業界分析、及びSpotfireによる可視化"," 本日の統合TVは、2010年10月29日に行われた第八回日本スポットファイアー・ユーザー総会 分科会アカデミアセッションから、DBCLS リサーチアシスタント @y_benjo氏による「特許公報を用いた自然言語処理による業界分析、及びSpotfireによる可視化」をお送りします。","講演,可視化,特許,情報収集","http://youtu.be/7hOMtcdycBE","http://togotv.dbcls.jp/movie/101220JASPUG_y_benjo.mov","http://doi.org/10.7875/togotv.2010.143","http://togotv.dbcls.jp/images/20101220_0.jpg","101220JASPUG_y_benjo.mov","thumbnail/20101220_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"404","","togotv.2010.142","","20101216","miRBaseの使い方","miRBase(ミアベースと読みます)は、microRNAの塩基配列やアノテーション、ターゲット遺伝子の予測、などを提供するデータベースです。 miRBaseに登録されているmicroRNAは全て、cloningされているか、そのmicroRNAが生体中で発現していて、かつprocessingを受けていることが示されているものに限ります。そのため、信頼性の高いデータベースと言えます。今回は、このデータベースでの検索方法、データのダウンロード方法やそのデータ形式について、例を挙げながら説明します。","塩基配列,遺伝子,ゲノム,発現解析,データベース","http://youtu.be/K0jbUEHnjL8","http://togotv.dbcls.jp/movie/101216miRBase.mov","http://doi.org/10.7875/togotv.2010.142","http://togotv.dbcls.jp/images/20101216_0.jpg","101216miRBase.mov","thumbnail/20101216_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"403","","togotv.2010.141","","20101209","統合DBプロジェクトで見えてきたもの—新センターで解決すべき課題—","本日の統合TVは2010年12月8日に開催されたBMB2010のワークショップ「ナショナル統合データベース構築に向けて 統合 DB プロジェクトの目的、現状、課題」から、東京大学大学院 新領域創成科学研究科 高木利久 教授による「統合DBプロジェクトで見えてきたもの〜新センターで解決すべき課題〜」をお送りします。","講演","http://youtu.be/G_jk-qSe4mc","http://togotv.dbcls.jp/movie/101209BMB10_tt.mov","http://doi.org/10.7875/togotv.2010.141","http://togotv.dbcls.jp/images/20101209_0.jpg","101209BMB10_tt.mov","thumbnail/20101209_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"402","","togotv.2010.140","","20101208","情報共有-容易にする技術と動機付ける技術-","本日の統合TVは2010年12月8日に開催されたBMB2010のワークショップ「ナショナル統合データベース構築に向けて 統合 DB プロジェクトの目的、現状、課題」から、国立遺伝学研究所生命情報・DDBJ研究センター 大久保公策 センター長による「情報共有-容易にする技術と動機付ける技術-」をお送りします。","講演","http://youtu.be/u5fAkwySZ4s","http://togotv.dbcls.jp/movie/101208BMB10_ko.mov","http://doi.org/10.7875/togotv.2010.140","http://togotv.dbcls.jp/images/20101208_0.jpg","101208BMB10_ko.mov","thumbnail/20101208_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"401","","togotv.2010.139","","20101207","新型DNAシーケンサーからのデータ解析で統合データベースを使い倒すには","本日の統合TVは2010年12月7日に開催されたBMB2010のワークショップ「ナショナル統合データベース構築に向けて 統合 DB プロジェクトの目的、現状、課題」から、ライフサイエンス統合データベースセンター坊農秀雅 特任准教授による「新型DNAシーケンサーからのデータ解析で統合データベースを使い倒すには」をお送りします。","講演,DBCLS,NGS","http://youtu.be/pDDWrFEmJ0U","http://togotv.dbcls.jp/movie/101207BMB2010_bono.mov","http://doi.org/10.7875/togotv.2010.139","http://togotv.dbcls.jp/images/20101207_0.jpg","101207BMB2010_bono.mov","thumbnail/20101207_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"400","","togotv.2010.138","","20101201","Entrez Booksの使い方 2010","NCBIが提供するEntrezでは医学、生物学に関する教科書を中身を含めて検索・閲覧することができます。検索できるのは残念ながら英語の原著版のみですが、検索した教科書の内容を、章、チャプタ、パラグラフ毎に全文閲覧することができるだけでなく、教科書に掲載されている図表も細かく閲覧することが可能です。また、キーワード検索も対応しており、教科書の中で閲覧したい箇所を容易に見つけることができます。 今回は例として、細胞生物学や分子生物学を中心に生命科学分野の入門書・教科書として名高い”Molecular Biology of the Cell”(細胞の分子生物学)を検索しています。","文献検索,NCBI","http://youtu.be/C8rUji0VVMU","http://togotv.dbcls.jp/movie/101201entrezbooks.mov","http://doi.org/10.7875/togotv.2010.138","http://togotv.dbcls.jp/images/20101201_0.jpg","101201entrezbooks.mov","thumbnail/20101201_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"399","","togotv.2010.137","","20101125","EMBOSS preg を使い倒す","今回の動画では例として Zinc Finger モチーフの一つである ZF_A20 の配列パターンを検索しています。そして正規表現にマッチした配列を最終的に BioMart を用いて取得します。","EMBOSS,アミノ酸,タンパク質,遺伝子,配列解析","http://youtu.be/doSYQSIxbr4","http://togotv.dbcls.jp/movie/101125EMBOSS_preg.mov","http://doi.org/10.7875/togotv.2010.137","http://togotv.dbcls.jp/images/20101125_0.jpg","101125EMBOSS_preg.mov","thumbnail/20101125_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"398","","togotv.2010.136","","20101117","How to use BodyParts3D/Anatomography 2010","BodyParts3D is a web-based tool for generating an anatomical image by freely selecting body parts form a dictionary database. In this database, the shapes and positions of body parts are represented by 3D human models. Users can visualize, for example gene expression data and symptoms of each organ by mapping organ-specific data on the 3D human model data.","English,DBCLS,可視化,辞書","http://youtu.be/GXjXzYu4IMQ","http://togotv.dbcls.jp/movie/101117anatomo2010_eng.mov","http://doi.org/10.7875/togotv.2010.136","http://togotv.dbcls.jp/images/20101117_0.jpg","101117anatomo2010_eng.mov","thumbnail/20101117_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"397","","togotv.2010.135","","20101116","Galaxyを使い倒す あるIDに対応する別のIDをデータに付加する&解析結果・方法を共有する","Galaxyは主に生物系のデータ(ゲノムなど)を解析するための環境です。・ウェブ上のインターフェースで簡単に操作できる。・解析方法をワークフローとして保存できる。・ワークフローや解析履歴を他の人と共有できる。といった特徴があります。 今回は、DBCLSがGalaxyに独自の機能を組み込んだDBCLS Galaxyを使用して、マイクロアレイの実験データに別のプローブIDを付加する方法を紹介します。また、IDを付加するためのワークフローを作成し、以後に別のIDを容易に付加できるようにする方法を紹介します。そして、解析の結果・方法やワークフローを他人と共有する方法を紹介します。Galaxyを紹介した他の統合TV(DBCLS Galaxyの利用法とGalaxyを使い倒す 特定の転写因子予測結合領域と遺伝子上流領域の「交差点」をリストアップする)も御覧ください。","DBCLS,Galaxy,遺伝子,転写因子,ウェブツール","http://youtu.be/Jq-JT9cDtxI","http://togotv.dbcls.jp/movie/101116galaxy.mov","http://doi.org/10.7875/togotv.2010.135","http://togotv.dbcls.jp/images/20101116_0.jpg","101116galaxy.mov","thumbnail/20101116_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"396","","togotv.2010.134","","20101109","DBTSSを使って遺伝子の発現制御領域を調べる 2010","DBTSS(Database of Transcriptional Start Sites)は最新の完全長cDNA配列、 またその配列から明らかになった転写開始点 およびプロモーター領域の情報を公開しているデータベースです。2010年11月現在でヒトやマウス、その他の動物の転写開始点やプロモーターのデータを登録しています。またアップデートにより次世代シーケンサーのヒト遺伝子のデータが大幅に追加されているのでより詳細に遺伝子の転写開始点およびプロモーター領域を調べることができます。今回はKLF4とSOX2を例にとり、このデータベースの使い方について紹介します。","ゲノム,遺伝子,発現解析,NGS","http://youtu.be/_Spl3gR3mqc","http://togotv.dbcls.jp/movie/101109DBTSS_manual.mov","http://doi.org/10.7875/togotv.2010.134","http://togotv.dbcls.jp/images/20101109_0.jpg","101109DBTSS_manual.mov","thumbnail/20101109_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"395","","togotv.2010.133","","20101104","PubMedの検索結果を定点観測する その2 RSSリーダーを使う 2010","PubMed(「パブメド」と発音します)は、米国のNCBIから提供されている生物医学文献データベースです。 PubMedで自分の興味あるキーワード等を検索し、関係のありそうな論文の情報収集を日々行っているという人も多いと思います。ここではGoogleリーダーを使ってPubMedの検索結果のRSSフィードを取得し、新着情報のみをすばやく、効率的に得る方法について説明します。","文献検索,情報収集,Google","http://youtu.be/VdN27Nu-Tp4","http://togotv.dbcls.jp/movie/101104pubmed_rss_teiten2.mov","http://doi.org/10.7875/togotv.2010.133","http://togotv.dbcls.jp/images/20101104_0.jpg","101104pubmed_rss_teiten2.mov","thumbnail/20101104_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"394","","togotv.2010.132","","20101103","まとめ・閉会の挨拶","本日の統合TVは、2010年10月5日の統合(105)の日に東京大学武田ホールにて開催された4省庁(文部科学省、厚生労働省、農林水産省、経済産業省)合同シンポジウム「ライフサイエンスの未来へ〜10年先のデータベースを考える〜」から、東京大学新領域創成科学研究科 高木利久先生による「まとめ・閉会の挨拶」をお送りします。","講演","http://youtu.be/DIgL5zXgnl0","http://togotv.dbcls.jp/movie/101103sympo10_tt.mov","http://doi.org/10.7875/togotv.2010.132","http://togotv.dbcls.jp/images/20101103_0.jpg","101103sympo10_tt.mov","thumbnail/20101103_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"393","","togotv.2010.131","","20101102","医療情報の研究利用について:外国から学べること","本日の統合TVは、2010年10月5日の統合(105)の日に東京大学武田ホールにて開催された4省庁(文部科学省、厚生労働省、農林水産省、経済産業省)合同シンポジウム「ライフサイエンスの未来へ〜10年先のデータベースを考える〜」から、神戸学院大学法学部 佐藤雄一郎先生による「医療情報の研究利用について:外国から学べること」をお送りします。","講演,情報収集","http://youtu.be/MISdYKxSoco","http://togotv.dbcls.jp/movie/101102sympo10_sato.mov","http://doi.org/10.7875/togotv.2010.131","http://togotv.dbcls.jp/images/20101102_0.jpg","101102sympo10_sato.mov","thumbnail/20101102_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"392","","togotv.2010.130","","20101031","生命科学のための情報統合とテキストマイニング","本日の統合TVは、2010年10月5日の統合(105)の日に東京大学武田ホールにて開催された4省庁(文部科学省、厚生労働省、農林水産省、経済産業省)合同シンポジウム「ライフサイエンスの未来へ〜10年先のデータベースを考える〜」から、東京大学大学院情報学環、マンチェスター大学計算機科 辻井潤一先生による「生命科学のための情報統合とテキストマイニング」をお送りします。","講演","http://youtu.be/rYSrNw7AwpE","http://togotv.dbcls.jp/movie/101031sympo10_tsujii.mov","http://doi.org/10.7875/togotv.2010.130","http://togotv.dbcls.jp/images/20101031_0.jpg","101031sympo10_tsujii.mov","thumbnail/20101031_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"391","","togotv.2010.129","","20101030","東京大学情報基盤センター 大規模データ解析基盤運用に向けて","本日の統合TVは、2010年10月5日の統合(105)の日に東京大学武田ホールにて開催された4省庁(文部科学省、厚生労働省、農林水産省、経済産業省)合同シンポジウム「ライフサイエンスの未来へ〜10年先のデータベースを考える〜」から、東京大学情報基盤センター 石川裕センター長による「東京大学情報基盤センター 大規模データ解析基盤運用に向けて」をお送りします。","講演","http://youtu.be/3GbZ7CQHEbk","http://togotv.dbcls.jp/movie/101030sympo10_ishikawa.mov","http://doi.org/10.7875/togotv.2010.129","http://togotv.dbcls.jp/images/20101030_0.jpg","101030sympo10_ishikawa.mov","thumbnail/20101030_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"390","","togotv.2010.128","","20101029","バイオマーカー・薬剤作用機序研究におけるデータベースの必要性と課題","本日の統合TVは、2010年10月5日の統合(105)の日に東京大学武田ホールにて開催された4省庁(文部科学省、厚生労働省、農林水産省、経済産業省)合同シンポジウム「ライフサイエンスの未来へ〜10年先のデータベースを考える〜」から、エーザイ株式会社 青島健先生による「バイオマーカー・薬剤作用機序研究におけるデータベースの必要性と課題」をお送りします。","講演","http://youtu.be/rqKjt3SJXG0","http://togotv.dbcls.jp/movie/101029sympo10_aoshima.mov","http://doi.org/10.7875/togotv.2010.128","http://togotv.dbcls.jp/images/20101029_0.jpg","101029sympo10_aoshima.mov","thumbnail/20101029_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"389","","togotv.2010.127","","20101028","私はなぜ統合データベースを立ち上げたのか 2050年に向けて","本日の統合TVは、2010年10月5日の統合(105)の日に東京大学武田ホールにて開催された4省庁(文部科学省、厚生労働省、農林水産省、経済産業省)合同シンポジウム「ライフサイエンスの未来へ〜10年先のデータベースを考える」から、情報・システム研究機構 堀田凱樹 機構長による「私はなぜ統合データベースを立ち上げたのか〜2050年に向けて」をお送りします。","講演","http://youtu.be/8H3z2dZy3RY","http://togotv.dbcls.jp/movie/101028sympo10_hotta.mov","http://doi.org/10.7875/togotv.2010.127","http://togotv.dbcls.jp/images/20101028_0.jpg","101028sympo10_hotta.mov","thumbnail/20101028_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"388","","togotv.2010.126","","20101027","ショウジョウバエ脳の神経画像データベースFlybrain: 15年の蓄積と将来への課題","本日の統合TVは、2010年10月5日の統合(105)の日に東京大学武田ホールにて開催された4省庁(文部科学省、厚生労働省、農林水産省、経済産業省)合同シンポジウム「ライフサイエンスの未来へ〜10年先のデータベースを考える」から、東京大学分子細胞生物学研究所 伊藤啓先生による「ショウジョウバエ脳の神経画像データベースFlybrain: 15年の蓄積と将来への課題」をお送りします。","講演,画像,データベース","http://youtu.be/nc6yH3elFrU","http://togotv.dbcls.jp/movie/101027sympo10_itok.mov","http://doi.org/10.7875/togotv.2010.126","http://togotv.dbcls.jp/images/20101027_0.jpg","101027sympo10_itok.mov","thumbnail/20101027_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"387","","togotv.2010.125","","20101026","オーミクス研究者から見たデータベース〜データ生産者の目線〜","本日の統合TVは、2010年10月5日の統合(105)の日に東京大学武田ホールにて開催された4省庁(文部科学省、厚生労働省、農林水産省、経済産業省)合同シンポジウム「ライフサイエンスの未来へ〜10年先のデータベースを考える」から、東京大学理学系研究科 伊藤隆司先生による「オーミクス研究者から見たデータベース〜データ生産者の目線〜」をお送りします。","講演,データベース","http://youtu.be/FTvWE4qOTd8","http://togotv.dbcls.jp/movie/101026sympo10_itot.mov","http://doi.org/10.7875/togotv.2010.125","http://togotv.dbcls.jp/images/20101026_0.jpg","101026sympo10_itot.mov","thumbnail/20101026_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"386","","togotv.2010.124","","20101025","統合に関する現状報告","本日の統合TVは、2010年10月5日の統合(105)の日に東京大学武田ホールにて開催された4省庁(文部科学省、厚生労働省、農林水産省、経済産業省)合同シンポジウム「ライフサイエンスの未来へ〜10年先のデータベースを考える〜」から、長浜バイオ大学、東京医科歯科大学、情報システム研究機構理事 郷通子先生による「開会の挨拶・統合に関する現状報告」をお送りします。","DBCLS,講演","http://youtu.be/EmQD0xgsw28","http://togotv.dbcls.jp/movie/101025sympo10_go.mov","http://doi.org/10.7875/togotv.2010.124","http://togotv.dbcls.jp/images/20101025_0.jpg","101025sympo10_go.mov","thumbnail/20101025_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"385","","togotv.2010.123","","20101022","NCBI Genome Workbenchを使い倒す 導入・概要編","NCBI Genome WorkbenchはNCBIが提供するフリーの統合型ゲノム解析環境です。NCBI Genome Workbenchは配列情報の入手・管理やマルチプルアラインメントおよび系統樹作成といった解析機能が一つのパッケージに内包されています。また、Windows,MacOSX,Linuxの各プラットフォームに対応しています。 統合型ゲノム解析環境の例としては以前の番組で紹介したCLC Sequence Viewerもありますが、NCBI Genome Workbenchではアノテーションが付加された遺伝子のゲノム上の位置の探索や異なる形状の系統樹作成が可能など、より高度な機能を有しています。また、Enterz GeneなどのWeb上のデータベースにない統合型ゲノム解析環境の利点として、自身のPCに作成したワークスペース上で解析結果を個別に管理・共有を行うことができ、現在の状態を保持したまま保存・再開を行うことができます。今回は導入編として、NCBI Genome Workbenchのインストール方法および目的遺伝子の塩基配列情報の検索方法を説明します。なお、NCBI Genome Workbenchを導入するには、導入先のPCにMicrosoft .NET Framework 3.5以上がインストールされている必要があります。","ゲノム,塩基配列,NCBI,アラインメント","http://youtu.be/W0Y95-0rngk","http://togotv.dbcls.jp/movie/101022GW2.1.mov","http://doi.org/10.7875/togotv.2010.123","http://togotv.dbcls.jp/images/20101022_0.jpg","101022GW2.1.mov","thumbnail/20101022_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"384","","togotv.2010.122","","20101021","PubMedの検索結果を定点観測する その1 2010","PubMed(「パブメド」と発音します)は、米国のNCBIから提供されている生物医学文献データベースです。 PubMedで自分の興味あるキーワード等を検索し、関係のありそうな論文の情報収集を日々行っているという人も多いと思います。ここではPubMedの検索結果のRSSフィードを取得し、新着情報のみをすばやく、効率的に得る方法について説明します。","文献検索,NCBI,情報収集","http://youtu.be/DVt9To0IUBw","http://togotv.dbcls.jp/movie/101021pubmed_rss_teiten1.mov","http://doi.org/10.7875/togotv.2010.122","http://togotv.dbcls.jp/images/20101021_0.jpg","101021pubmed_rss_teiten1.mov","thumbnail/20101021_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"383","","togotv.2010.121","","20101015","ウイルスの持ち出した宿主の遺伝子配列がコードされている領域をアミノ酸配列レベルでゲノム中から探し当てる 2010","ラウス肉腫ウイルス(Rous sarcoma virus)は、ニワトリで発見された腫瘍形成に関わっている腫瘍ウイルスで、1911年にペイトン・ラウスによって発見されました。2本鎖RNAをゲノムにもつレトロウイルスで、ガンの原因となる遺伝子はsarcomaからsrcと名付けられましたが、実は宿主の細胞にもほとんど同じ遺伝子配列が存在していることが発見されました。ウイルス由来のsrc遺伝子はv-src、細胞由来のものはc-srcと記述されています。今回はそのv-srcのタンパク質配列を、ラウス肉腫ウイルスのゲノム配列を検索するところから始めて取得し、それをすでに解読されているニワトリのゲノム配列に対してアミノ酸配列のままBLAT検索にかけc-srcがコードされているゲノム上の領域を探し当てます。さらにその2種類のsrcのアラインメントを見ることでsrc遺伝子の遺伝子情報をウイルスがニワトリゲノムから持ち出してから現在に至るまでどこの場所に変異が入ったか、知ることが出来ます。最後に、その場所をUCSC Genome Browser/a>で確認します(なお、UCSC Genome Browserの日本語による解説をkumaさんがここから公開されています","アミノ酸,塩基配列,配列解析,ゲノム,UCSC,アラインメント","http://youtu.be/vw_2Thf0ZtU","http://togotv.dbcls.jp/movie/101015rsv_r.mov","http://doi.org/10.7875/togotv.2010.121","http://togotv.dbcls.jp/images/20101015_0.jpg","101015rsv_r.mov","thumbnail/20101015_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"382","","togotv.2010.120","","20101007","CNV Control Databaseの使い方","CNV Control Database は、様々なラボから得られたコピー数多型(copy number variation)の位置情報を集めているデータベースです。今回は、このデータベースの基本的な使い方を例を挙げながら紹介します。","可視化,多型,塩基配列,データベース","http://youtu.be/pjhFkWtJwE0","http://togotv.dbcls.jp/movie/101007CNV.mov","http://doi.org/10.7875/togotv.2010.120","http://togotv.dbcls.jp/images/20101007_0.jpg","101007CNV.mov","thumbnail/20101007_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"381","","togotv.2010.119","","20100929","公共アーカイブ DRAへのデータの登録方法","DRA(DDBJ Sequence Read Archive)は次世代シークエンサからの出力データのためのデータアーカイブです。今回の動画はD-wayによるDRAへのデータの登録方法について紹介します。 この番組は2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京よりDDBJ 児玉 悠一アノテータによって紹介された 次世代シーケンサ配列の登録・データ解析〜次世代シーケンサアーカイブDB〜に基づき基本事項、注意点等をまとめたものです。DRAの概要や詳細についてはそちらを御覧ください。","DDBJ,ゲノム,遺伝子,NGS","http://youtu.be/MlH1BiUq07E","http://togotv.dbcls.jp/movie/100929DRA.mov","http://doi.org/10.7875/togotv.2010.119","http://togotv.dbcls.jp/images/20100929_0.jpg","100929DRA.mov","thumbnail/20100929_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"380","","togotv.2010.118","","20100928","Case Control GWAS Databaseの使い方","Case Control GWAS database は、アレル頻度、遺伝子型頻度などの頻度情報や、遺伝統計学的な手法を用いたモデル適用の結果を、マップとグラフ上に視覚的に分かりやすくまとめたものです。今回は、例を用いながら、このデータベースの基本的な使い方を説明します。","可視化,多型,塩基配列,データベース","http://youtu.be/MlH1BiUq07E","http://togotv.dbcls.jp/movie/100928GWAS.mov","http://doi.org/10.7875/togotv.2010.118","http://togotv.dbcls.jp/images/20100928_0.jpg","100928GWAS.mov","thumbnail/20100928_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"379","","togotv.2010.117","","20100924","RSS フィードを利用して遺伝子発現バンク(GEO)目次の新着情報を取得する","今回の統合TVは、RSS フィードを利用した遺伝子発現バンク(GEO)目次の新着情報の取得についてです。 GEO 目次は、NCBI GEOの遺伝子発現データを利用しやすくするためのシステムですが、このサービスは RSS フィードを提供しています。RSS フィードとは、 RSS という形式で Web サイトの更新情報を提供するサービスのことで、RSS リーダーというソフトウェアを用いることで Web サイトの更新情報を簡単に取得できます。 ここでは、そのように便利な RSS フィードを利用して、手動でチェックしなくとも遺伝子発現バンクの最新情報を入手するための方法を解説します。","DBCLS,発現解析,遺伝子,環境設定,GEO,情報収集","http://youtu.be/MqP75BQqeVU","http://togotv.dbcls.jp/movie/100926georss.mov","http://doi.org/10.7875/togotv.2010.117","http://togotv.dbcls.jp/images/20100924_0.jpg","100926georss.mov","thumbnail/20100924_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"378","","togotv.2010.116","","20100922","データおよび知識の共有と統合化に向けて","本日の統合TVは、2010年9月20日に開催された、第48回日本生物物理学会年会 フォーラム「デジタル革命の本当のインパクト」から、ライフサイエンス統合データベースセンター 高木利久 センター長による「データおよび知識の共有と統合化に向けてーライフサイエンス統合データベースプロジェクトの取り組み」をお送りします。","講演,DBCLS","http://youtu.be/fhJSGvhNMzM","http://togotv.dbcls.jp/movie/100922BioPhys_tt.mov","http://doi.org/10.7875/togotv.2010.116","http://togotv.dbcls.jp/images/20100922_0.jpg","100922BioPhys_tt.mov","thumbnail/20100922_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"377","","togotv.2010.115","","20100921","デジタル革命のインパクトと情報共有","本日の統合TVは、2010年9月20日に開催された、第48回日本生物物理学会年会 フォーラム「デジタル革命の本当のインパクト」から、クリエイティブ・コモンズ・ジャパン 理事/国際大学グローバルコミュニケーションセンター 渡辺智暁 主任研究員/講師による「デジタル革命のインパクトと情報共有」をお送りします。","講演,クリエイティブ・コモンズ","http://youtu.be/XtA91NtMayk","http://togotv.dbcls.jp/movie/100921BioPhys_watanabe.mov","http://doi.org/10.7875/togotv.2010.115","http://togotv.dbcls.jp/images/20100921_0.jpg","100921BioPhys_watanabe.mov","thumbnail/20100921_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"376","","togotv.2010.114","","20100920","デジタル革命の本当のインパクト","本日の統合TVは、2010年9月20日に開催された、第48回日本生物物理学会年会 フォーラム「デジタル革命の本当のインパクト」から、国立遺伝学研究所生命情報・DDBJ研究センター 大久保公策 センター長による開催趣旨説明をお送りします。","講演","http://youtu.be/IiqZFMVmt4w","http://togotv.dbcls.jp/movie/100920BioPhys_kosaku.mov","http://doi.org/10.7875/togotv.2010.114","http://togotv.dbcls.jp/images/20100920_0.jpg","100920BioPhys_kosaku.mov","thumbnail/20100920_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"375","","togotv.2010.113","","20100902","SAKURAを用いた塩基配列登録の方法(基本編)","SAKURAは,DDBJが運用しているウェブ経由の塩基配列データ登録システムです。
【注: 2016年現在、このサービスは運用されていません。】
今回の番組ではSAKURAを用いた塩基配列の登録方法についてデモデータを使いながら紹介します。この番組は2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、DDBJ 小菅 武英 アノテータによる「SAKURAを用いた塩基配列登録の方法」に基づき、登録に関する基本的な注意点などを分かりやすくまとめたものです。登録の詳細についてはこちらの動画をご覧ください。またヘルプ資料(PDF)がありますのでこちらもあわせて参考にしてください。","ゲノム,塩基配列,遺伝子,DDBJ,登録方法","http://youtu.be/UfOLkwmmac8","http://togotv.dbcls.jp/movie/100902sakura.mov","http://doi.org/10.7875/togotv.2010.113","http://togotv.dbcls.jp/images/20100902_0.jpg","100902sakura.mov","thumbnail/20100902_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"374","","togotv.2010.112","","20100901","How to use Allie abbreviations search with corresponding long forms 2010","Allie is a search service for abbreviations and long forms utilized in Life science. It provides a solution to the issue that many abbreviations are used in the literature, and polysemous or synonymous abbreviations appear frequently, making it difficult to read and understand scientific papers that are not relevant to the reader's expertise. ""Allie"" searches for abbreviations and their corresponding long forms from titles and abstracts in the entire ""MEDLINE"" a database of the U.S. National Library of Medicine. The search result not only provides corresponding abbreviations or long forms of the inquired item, but also displays co-occurring abbreviations as well as a list of publications that contain the inquired item. Click the image to watch the Flash movie.","DBCLS,English,文献検索,ウェブツール,辞書","http://youtu.be/ds3YLXuj-K8","http://togotv.dbcls.jp/movie/100901Allie2010eng.mov","http://doi.org/10.7875/togotv.2010.112","http://togotv.dbcls.jp/images/20100901_0.jpg","100901Allie2010eng.mov","thumbnail/20100901_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"373","","togotv.2010.111","","20100831","Allieを使って略語の正式名称を検索する2010","Allie(「アリー」と発音します)は、ライフサイエンス統合データベースセンター(DBCLS)が提供する医学生物系論文書誌情報データベースMEDLINEを対象とし、出現する略語(略字)とその正式名称のペアを検索するシステムです。 生命科学系の論文では非常に多くの略語が使われており、同じ表記でも全く違う意味を示していることが少なくありません。Allieでは、利用者の興味のある略語を検索語として入力することで、その使われ方をMEDLINE中によく現れる順で一覧表示すると共に、その略語が使われた論文の発表年を提示しています。また、検索された各略語について、その意味で使われている論文中で共起する他の略語も同時に検索されることが特徴です。 2009年版と比べると、略語一覧の検索機能が強化されています。また、2009年当時よりもiPS細胞の検索順位が上がっている点も興味深いでしょう。","DBCLS,文献検索,辞書,ウェブツール,情報収集","http://youtu.be/rChJRJ0aSL8","http://togotv.dbcls.jp/movie/100831Allie2010.mov","http://doi.org/10.7875/togotv.2010.111","http://togotv.dbcls.jp/images/20100831_0.jpg","100831Allie2010.mov","thumbnail/20100831_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"372","","togotv.2010.110","","20100830","GSEA softwareの使い方 発展編","Gene Set Enrichment Analysis (GSEA) は、予め用意した遺伝子セットが異なる条件下でどう振舞うかを調べる手法です。これを利用し発現プロファイルを解釈することができます。詳しいアルゴリズムは、Gene Set Enrichment Analysis PNAS paper (pdf)を参照してください。GSEA softwareはBroad Instituteによって実装されたGSEAを行うソフトウェアです。前回は、GSEA softwareのGUI版の導入と簡単な解析方法・結果の閲覧方法を解説しました。今回は、NCBI GEOより取得した公共の遺伝子発現データ(GSE1657:Adipocyte Differentiation Homo sapiens]のSeries Matrix Files)を表計算ソフトを使い加工し、GSEA softwareに読み込ませ、解析を行う手順を解説します。","遺伝子,発現解析,可視化,ソフトウェア","http://youtu.be/NvS3Q4xsGWA","http://togotv.dbcls.jp/movie/100830gsea2.mov","http://doi.org/10.7875/togotv.2010.110","http://togotv.dbcls.jp/images/20100830_0.jpg","100830gsea2.mov","thumbnail/20100830_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"371","","togotv.2010.109","","20100829","遺伝子発現データベースの活用法@AJACSみちのく","本日の統合TVは、2010年8月4, 5日に東北大学医学部にて開催された統合データベース講習会 AJACSみちのくより、ライフサイエンス統合データベースセンター小野 浩雅 特任技術専門員による「遺伝子発現データベースの活用法」をお送りします。","実習, AJACS,遺伝子,発現解析,データベース,ウェブツール","http://youtu.be/B54aB5I3eQ0","http://togotv.dbcls.jp/movie/100829AJACS21_honoEX.mov","http://doi.org/10.7875/togotv.2010.109","http://togotv.dbcls.jp/images/20100829_0.jpg","100829AJACS21_honoEX.mov","thumbnail/20100829_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"370","","togotv.2010.108","","20100828","統合TVを使い倒す 統合TV Curatedの紹介@AJACSみちのく","本日の統合TVは、2010年8月4, 5日に東北大学医学部にて開催された統合データベース講習会 AJACSみちのくより、ライフサイエンス統合データベースセンター小野 浩雅 特任技術専門員による「統合TVを使い倒す〜統合TV Curatedの紹介〜」をお送りします。","実習, AJACS,DBCLS","http://youtu.be/rIQn0pBffoQ","http://togotv.dbcls.jp/movie/100828AJACS21_hono.mov","http://doi.org/10.7875/togotv.2010.108","http://togotv.dbcls.jp/images/20100828_0.jpg","100828AJACS21_hono.mov","thumbnail/20100828_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"369","","togotv.2010.107","","20100827","R/Bioconductorを使った遺伝子発現解析@AJACSみちのく","本日の統合TVは、2010年8月4, 5日に東北大学医学部にて開催された統合データベース講習会 AJACSみちのくより、埼玉医科大学国際医療センター トランスレーショナルリサーチセンター 先端医療開発センター 和田 智 助教による「R/Bioconductorを使った遺伝子発現解析」をお送りします。約32分です。","実習, AJACS,R,Bioconductor","http://youtu.be/4ZwSAc1YpmM","http://togotv.dbcls.jp/movie/100827AJACS21_wada.mov","http://doi.org/10.7875/togotv.2010.107","http://togotv.dbcls.jp/images/20100827_0.jpg","100827AJACS21_wada.mov","thumbnail/20100827_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"368","","togotv.2010.106","","20100826","ゲノム情報の可視化@AJACSみちのく","本日の統合TVは、2010年8月4, 5日に東北大学医学部にて開催された統合データベース講習会 AJACSみちのくより、ライフサイエンス統合データベースセンター岡本 忍 特任准教授による「ゲノム情報の可視化」をお送りします。","実習, AJACS,可視化","http://youtu.be/PUMxZhiDM9s","http://togotv.dbcls.jp/movie/100826AJACS21_so.mov","http://doi.org/10.7875/togotv.2010.106","http://togotv.dbcls.jp/images/20100826_0.jpg","100826AJACS21_so.mov","thumbnail/20100826_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"367","","togotv.2010.105","","20100825","次世代シーケンサの活用法 データの解析法@AJACSみちのく","本日の統合TVは、2010年8月4, 5日に東北大学医学部にて開催された統合データベース講習会 AJACSみちのくより、ライフサイエンス統合データベースセンター坊農 秀雅 特任准教授による「次世代シーケンサの活用法〜データの解析法〜」をお送りします。 ","実習, AJACS,NGS,発現解析","http://youtu.be/jmV4T2vNcxE","http://togotv.dbcls.jp/movie/100825AJACS21_bono_NGS.mov","http://doi.org/10.7875/togotv.2010.105","http://togotv.dbcls.jp/images/20100825_0.jpg","100825AJACS21_bono_NGS.mov","thumbnail/20100825_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"366","","togotv.2010.104","","20100824","次世代シーケンサの活用法 第三世代シーケンサについて@AJACSみちのく","本日の統合TVは、2010年8月4, 5日に東北大学医学部にて開催された統合データベース講習会 AJACSみちのくより、ライフサイエンス統合データベースセンター 河野 信 特任研究員による「次世代シーケンサの活用法〜第三世代シーケンサについて〜」をお送りします。約20分です。","実習, AJACS,NGS","http://youtu.be/k9bYyz0EEUc","http://togotv.dbcls.jp/movie/100824AJACS21_kawano.mov","http://doi.org/10.7875/togotv.2010.104","http://togotv.dbcls.jp/images/20100824_0.jpg","100824AJACS21_kawano.mov","thumbnail/20100824_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"365","","togotv.2010.103","","20100823","統合データベースプロジェクトのサービスを使い倒す@AJACSみちのく","本日の統合TVは、2010年8月4, 5日に東北大学医学部にて開催された統合データベース講習会 AJACSみちのくより、ライフサイエンス統合データベースセンター坊農 秀雅 特任准教授による「統合データベースプロジェクトのサービスを使い倒す」をお送りします。約60分です。","実習, AJACS,データベース","http://youtu.be/SopfrFf6QN8","http://togotv.dbcls.jp/movie/100823AJACS21_bonoDB.mov","http://doi.org/10.7875/togotv.2010.103","http://togotv.dbcls.jp/images/20100823_0.jpg","100823AJACS21_bonoDB.mov","thumbnail/20100823_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"364","","togotv.2010.102","","20100822","配列データの検索","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、国立遺伝学研究所CIB・DDBJ研究センター中村 保一 教授による「DDBJの紹介と配列データの検索」から、後半部分の「配列データの検索」をお送りします。","実習, AJACS,配列解析","http://youtu.be/hpFKI6szMR0","http://togotv.dbcls.jp/movie/100822AJACS_DDBJing22_yn_lecture.mov","http://doi.org/10.7875/togotv.2010.102","http://togotv.dbcls.jp/images/20100822_0.jpg","100822AJACS_DDBJing22_yn_lecture.mov","thumbnail/20100822_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"363","","togotv.2010.101","","20100821","DDBJの紹介","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、国立遺伝学研究所CIB・DDBJ研究センター中村 保一 教授による「DDBJの紹介と配列データの検索」から、前半部分の「DDBJの紹介」をお送りします。DDBJ (DNA Data Bank of Japan) の活動と世界の中でのDDBJの立ち位置について紹介いただきました。","実習, AJACS,DDBJ","http://youtu.be/wYKMrxxj0YY","http://togotv.dbcls.jp/movie/100821AJACS_DDBJing22_yn_ddbj.mov","http://doi.org/10.7875/togotv.2010.101","http://togotv.dbcls.jp/images/20100821_0.jpg","100821AJACS_DDBJing22_yn_ddbj.mov","thumbnail/20100821_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"362","","togotv.2010.100","","20100820","生命科学系データベースアーカイブの使い方","生命科学系データベースアーカイブは、国内のライフサイエンス研究者が生み出したデータセットをわが国の公共財としてまとめて長期間安定に維持保管し、データ説明(メタデータ)を統一して検索を容易にすると共に、利用許諾条件などの明示を行うことで、多くの人が容易にデータへアクセスしダウンロードを行えるようにするサービスです。ここではその使い方を解説します。","DBCLS,文献検索,データベース","http://youtu.be/8zaXmdXAINE","http://togotv.dbcls.jp/movie/100820dbarchive.mov","http://doi.org/10.7875/togotv.2010.100","http://togotv.dbcls.jp/images/20100820_0.jpg","100820dbarchive.mov","thumbnail/20100820_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"361","","togotv.2010.099","","20100816","How to use Gene Expression Omnibus (GEO) Overview 2010","GEO (Gene Expression Omnibus) is a gene expression data repository that accepts array- and sequence-based data. It is developed and maintained by NCBI (National Center for Biotechnology Information). It has become very difficult to grasp the outline of data accepted by GEO, since GEO accepts a variety of gene expression data, (the accepted data are categorized into three types:Datasets derived from research projects, Samples used and Platform to produce the data) that has been generated using different experimental methods.To ease this situation, Dr. Okubo and colleagues at the National Institute of Genetics (Japan) have developed the Gene Expression Omnibus (GEO) Overview. It is now maintained by the Database Center for Life Science (DBCLS). This tutorial describes how to use the ""Gene Expression Omnibus (GEO) Overview"" . It should be helpful when one wants to find out the outline of the abundant gene expression data available from GEO.","DBCLS,English,GEO","http://youtu.be/ADbqI6pMtwA","http://togotv.dbcls.jp/movie/100816GEOeng.mov","http://doi.org/10.7875/togotv.2010.099","http://togotv.dbcls.jp/images/20100816_0.jpg","100816GEOeng.mov","thumbnail/20100816_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"360","","togotv.2010.098","","20100814","SNP control databaseの使い方","SNP control database は、700サンプルから得られた100万ものSNPが登録されているデータベースです。その他にも、対立遺伝子頻度、遺伝子型頻度、ハーディ・ワインベルグ平衡検定の結果、それぞれのSNPのアノテーションやSNP検出の信頼度が載せられています。 このデータベースでのさまざまなSNP検索方法の中で今回は、SNP IDからの検索、遺伝子名からの検索、染色体上の座標からの検索を、例を挙げながら、紹介します。","ゲノム,遺伝子,可視化,多型","http://youtu.be/czDL1JuqtKE","http://togotv.dbcls.jp/movie/100814SNP_control_database.mov","http://doi.org/10.7875/togotv.2010.098","http://togotv.dbcls.jp/images/20100814_0.jpg","100814SNP_control_database.mov","thumbnail/20100814_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"359","","togotv.2010.097","","20100813","次世代シーケンサ配列の登録・データ解析 クラウド型解析パイプライン・実習assembly/mapping","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、国立遺伝学研究所CIB・DDBJ研究センター エンジニア 望月 孝子 氏による「次世代シーケンサ配列の登録・データ解析〜クラウド型解析パイプライン・実習assembly/mapping〜」をお送りします。次世代シーケンサで読んだ枯草菌のリシーケンスデータを DDBJ Read Annotation Pipeline を使って解析する方法について解説していただきました。具体的には、Illuminaでpaired-endで読んだ配列を Velvet を使ってアセンブリし、BLATで公表済みのゲノムにマッピングする、という一連の操作について紹介しています。","実習, AJACS,NGS,パイプライン,DDBJ,ゲノム","http://youtu.be/xDTBCzR6fR0","http://togotv.dbcls.jp/movie/100813AJACS_DDBJing_takakoron.mov","http://doi.org/10.7875/togotv.2010.097","http://togotv.dbcls.jp/images/20100813_0.jpg","100813AJACS_DDBJing_takakoron.mov","thumbnail/20100813_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"358","","togotv.2010.096","","20100812","次世代シーケンサ配列の登録・データ解析 次世代シーケンサアーカイブDB","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、国立遺伝学研究所CIB・DDBJ研究センター DDBJ構築チーム アノテータ 児玉 悠一 氏による「次世代シーケンサ配列の登録・データ解析〜次世代シーケンサアーカイブDB〜」をお送りします。次世代シーケンサから出てきた生出力データを登録するための公共アーカイブ DRA (DDBJ Sequence Read Archive)の紹介と、D-way を利用したデータの登録方法について解説していただきました。","実習, AJACS,NGS,データベース,登録方法","http://youtu.be/pPGhK2G-T5c","http://togotv.dbcls.jp/movie/100812AJACS_DDBJing_kodama.mov","http://doi.org/10.7875/togotv.2010.096","http://togotv.dbcls.jp/images/20100812_0.jpg","100812AJACS_DDBJing_kodama.mov","thumbnail/20100812_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"357","","togotv.2010.095","","20100811","次世代シーケンサ配列の登録・データ解析 次世代シーケンサのクラウド型解析パイプライン","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、国立遺伝学研究所CIB・DDBJ研究センター神沼 英里 助教による「次世代シーケンサ配列の登録・データ解析〜次世代シーケンサのクラウド型解析パイプライン〜」をお送りします。次世代/新型シーケンサの歴史や各機器の特徴などの紹介の後、DDBJで提供しているデータを解析するためのパイプライン DDBJ Read Annotation Pipeline について紹介していただきました。","講演, AJACS,NGS,パイプライン,DDBJ,ゲノム","http://youtu.be/BO7dqjsiEFM","http://togotv.dbcls.jp/movie/100811AJACS_DDBJing_elik.mov","http://doi.org/10.7875/togotv.2010.095","http://togotv.dbcls.jp/images/20100811_0.jpg","100811AJACS_DDBJing_elik.mov","thumbnail/20100811_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"356","","togotv.2010.094","","20100809","DBCLS Galaxyの利用法","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、DBCLS山口 敦子 特任准教授による「DBCLS Galaxyの利用法」をお送りします。ゲノムなどの大規模データを対象とした、解析ツールの組み合わせインタフェイス Galaxy の紹介です。Galaxy はプログラミングの知識を必要とせずに、ウェブ上でゲノムなどの大規模データを読み込み、各種解析ツールを使って解析を実行することができます。また、実行した解析手順を保存してワークフローの作成などもでき、実行結果やワークフローは共同研究者と共有することが可能となっています。今回紹介するDBCLS Galaxy は、ペンシルバニア州立大学が中心となって開発している Galaxy をベースとし、日本の生物学研究者を対象として独自のツールや機能を組み込んでいます。","実習, AJACS,Galaxy,ウェブツール","http://youtu.be/TH7kBmNU8xo","http://togotv.dbcls.jp/movie/100809AJACS_DDBJing_galaxy.mov","http://doi.org/10.7875/togotv.2010.094","http://togotv.dbcls.jp/images/20100809_0.jpg","100809AJACS_DDBJing_galaxy.mov","thumbnail/20100809_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"355","","togotv.2010.093","","20100808","BodyParts3D/Anatomographyの利用法","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、DBCLS 三橋 信孝 特任研究員による「BodyParts3D/Anatomographyの利用法」をお送りします。臓器などの人体のパーツを三次元モデルで記述したデータベースBodyParts3Dと、これらのパーツを自由に組み合わせて描画するためのツール Anatomography の紹介です。これまでの進捗状況と今年度より提供が開始された新インターフェイスが説明されています。","実習, AJACS,可視化","http://youtu.be/DRVf_bM4IpY","http://togotv.dbcls.jp/movie/100808AJACS_DDBJing_mitsuhashi.mov","http://doi.org/10.7875/togotv.2010.093","http://togotv.dbcls.jp/images/20100808_0.jpg","100808AJACS_DDBJing_mitsuhashi.mov","thumbnail/20100808_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"354","","togotv.2010.092","","20100807","TogoDBの使い方 自分のデータベースを作る","TogoDBはエクセルやメモ帳等で作成されたデータを用いて、データベースを簡単に作ることが出来るサービスです。今回はデータベースの作り方を紹介します。 このサービスを利用するためにはDBCLSのOpenIDが必要となります。IDを取得していない方はこちらを参考にし、IDを取得してください。またこちらの PDF"" %>にも書かれていますが一部のブラウザでは編集が出来ないことがあります。","DBCLS,データベース","http://youtu.be/v1WcCu0MlMI","http://togotv.dbcls.jp/movie/100807togodb_manual3.mov","http://doi.org/10.7875/togotv.2010.092","http://togotv.dbcls.jp/images/20100807_0.jpg","100807togodb_manual3.mov","thumbnail/20100807_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"353","","togotv.2010.091","","20100806","データベースの統合的活用術:文献検索を中心に","本日の統合TVは、2010年7月21日に東京大学農学部にて開催されたアグリバイオインフォマティクス教育研究ユニット農学生命情報科学特論Iより、DBCLS仲里 猛留 特任研究員による「データベースの統合的活用術:文献検索を中心に」をお送りします。約56分です。","DBCLS,講演,文献検索,情報収集","http://youtu.be/tywe7EtVEs0","http://togotv.dbcls.jp/movie/100806nakazato.mov","http://doi.org/10.7875/togotv.2010.091","http://togotv.dbcls.jp/images/20100806_0.jpg","100806nakazato.mov","thumbnail/20100806_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"352","","togotv.2010.090","","20100805","バイオの買物.comを使い倒す 2010","バイオの買物.comは、ライフサイエンス分野でよく使われる試薬などの製品情報を各メーカーから収集し、研究者が、最も適した製品を簡単に確実に発見できることを目的としたサイトです。「製品を検索する」だけではなく「新しい製品を発見できる」カタログを目指して作られています。 検索機能が充実しており、各製品が細かくカテゴリー分けされているのが大きな特徴で、より多くの情報を網羅するために、スポンサー以外のメーカーの製品情報も掲載されています。","抗体,情報収集","http://youtu.be/L10OTHnB47A","http://togotv.dbcls.jp/movie/100805bionokaimono.mov","http://doi.org/10.7875/togotv.2010.090","http://togotv.dbcls.jp/images/20100805_0.jpg","100805bionokaimono.mov","thumbnail/20100805_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"351","","togotv.2010.089","","20100804","日本語バイオポータルサイトJabionを使い倒す ゲノムビュアー編","Jabion(ジャビオン、と発音します)は、一般社会および専門家の両方を対象とし、生物学分野における分かりやすく正しい情報の提供を目的としたわが国初の日本語バイオポータルサイトです( 総説PDF )。このサイトは、一般向けとして生物学用語や科学ニュース等を分かりやすく解説すると同時に、専門家向けとして最新の研究動向や日本語での利用が可能な文献検索やゲノム情報などを提供しています。ちなみに、Jabionの名前の由来は、日本における生物学のトップサイトを目指す意味で、日本(Japan)と生物学(Biology)の頭文字からもじって命名されました。前回は「PubMed日本語検索(文献検索)」の機能を紹介しましたが、今回はゲノムビュアーを用いた検索について紹介します。ゲノムビュアーでは、遺伝子名やその他の生物学的なキーワードを日本語で入力すると、該当するもしくは関連のある英語の専門用語に自動で変換したのちに遺伝子情報の検索を行うことができます。","遺伝子,ゲノム","http://youtu.be/KUIV33UKmco","http://togotv.dbcls.jp/movie/100804jabiongenome2.mov","http://doi.org/10.7875/togotv.2010.089","http://togotv.dbcls.jp/images/20100804_0.jpg","100804jabiongenome2.mov","thumbnail/20100804_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"350","","togotv.2010.088","","20100803","BodyParts3D/Anatomography の使い方 操作編","BodyParts3D(ボディパーツ3D)は統合ホームページで提供されているツールの一つで人体各部位の位置や形状を3次元モデルで記述したデータベースです。Anatomography(アナトモグラフィー)を使って、BodyParts3Dから解剖学用語を選択して自由に人体のモデル図を作成できます。また、器官別の発現解析データ、疾患別症状分布などの手持ちのデータを人体の3D画像にマッピングして俯瞰することもできます。3Dの人体地図にデータをマップすることで、""体に関する情報""どうしの関係を視覚的・直感的に理解したい場面で真価を発揮します。 いまなお現在進行形でその改良が進められており、内容の充実とともに使いやすさも日々向上しています。今回は2010年に行われたインターフェイスの変更に伴い、更新されたAnatomographyの操作方法を中心に紹介しています。","DBCLS,可視化,辞書","http://youtu.be/cjyYkEHYM2Y","http://togotv.dbcls.jp/movie/100803anatomo2010.mov","http://doi.org/10.7875/togotv.2010.088","http://togotv.dbcls.jp/images/20100803_0.jpg","100803anatomo2010.mov","thumbnail/20100803_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"349","","togotv.2010.087","","20100802","万見(Yorodumi)の使い方 基本と連携","万見(よろずみと読みます)は日本蛋白質データバンク(PDBj)が提供するタンパク質構造解析サービスです。万見は立体構造を見て楽しむことをコンセプトとしています。また、Uniprotとの連携により、詳細なデータを得ることも出来ます。今回は万見によるシアノバクテリアSynechocystis sp. PCC 6803由来Heme oxygenase-1(ヘム分解を行う酵素)の立体構造データをサンプルとしています。","タンパク質,可視化,構造解析,PDBj","http://youtu.be/tLsljZbQJII","http://togotv.dbcls.jp/movie/100802yorodumi.mov","http://doi.org/10.7875/togotv.2010.087","http://togotv.dbcls.jp/images/20100802_0.jpg","100802yorodumi.mov","thumbnail/20100802_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"348","","togotv.2010.086","","20100801","BodyParts3D/Anatomography の使い方 変更点の紹介編","BodyParts3D(ボディパーツ3D)は統合ホームページで提供されているツールの一つで人体各部位の位置や形状を3次元モデルで記述したデータベースです。Anatomography(アナトモグラフィー)を使って、BodyParts3Dから解剖学用語を選択して自由に人体のモデル図を作成できます。また、器官別の発現解析データ、疾患別症状分布などの手持ちのデータを人体の3D画像にマッピングして俯瞰することもできます。3Dの人体地図にデータをマップすることで、""体に関する情報""どうしの関係を視覚的・直感的に理解したい場面で真価を発揮します。いまなお現在進行形でその改良が進められており、内容の充実とともに使いやすさも日々向上しています。今回は2010年に行われたインターフェイスの変更に伴い、更新された点を中心に紹介しています。","DBCLS,可視化,辞書","http://youtu.be/RKldf8u5pBI","http://togotv.dbcls.jp/movie/100801bp3d2010.mov","http://doi.org/10.7875/togotv.2010.086","http://togotv.dbcls.jp/images/20100801_0.jpg","100801bp3d2010.mov","thumbnail/20100801_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"347","","togotv.2010.085","","20100731","食用生物データベースLUNCHBOXの使い方","本日の統合TVは、文部科学省委託研究開発事業「統合データベースプロジェクト」におけるアノテータ・キュレータ人材養成プログラムの一環として長浜バイオ大学が作成し、2回生の実習で実施している一番初級(対象:高校生〜大学2年程度)のテキスト「バイオ分野のデータベースの統合的な利用」の自習用動画シリーズ第六弾として「食用生物データベースLUNCHBOXの使い方」をお送りします。LUNCHBOXは食用生物の由来や薬用、含有する成分などを調べることができます。","データベース","http://youtu.be/o2YZ5aiEp2s","http://togotv.dbcls.jp/movie/100731lunchbox.mov","http://doi.org/10.7875/togotv.2010.085","http://togotv.dbcls.jp/images/20100731_0.jpg","100731lunchbox.mov","thumbnail/20100731_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"346","","togotv.2010.084","","20100730","Jabionを使って遺伝子を調べる","本日の統合TVは、文部科学省委託研究開発事業「統合データベースプロジェクト」におけるアノテータ・キュレータ人材養成プログラムの一環として長浜バイオ大学が作成し、2回生の実習で実施している一番初級(対象:高校生〜大学2年程度)のテキスト「バイオ分野のデータベースの統合的な利用」の自習用動画シリーズ第五弾として「Jabionを使って遺伝子を調べる」をお送りします。Jabion(ジャビオン、と発音します)は、一般社会および専門家の両方を対象とし、生物学分野における分かりやすく正しい情報の提供を目的としたわが国初の日本語バイオポータルサイトです。","遺伝子,情報収集","http://youtu.be/WIwgPutMooM","http://togotv.dbcls.jp/movie/100730nagahama_jabion.mov","http://doi.org/10.7875/togotv.2010.084","http://togotv.dbcls.jp/images/20100730_0.jpg","100730nagahama_jabion.mov","thumbnail/20100730_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"345","","togotv.2010.083","","20100729","遺伝資源データベースSHIGENの使い方","本日の統合TVは、文部科学省委託研究開発事業「統合データベースプロジェクト」におけるアノテータ・キュレータ人材養成プログラムの一環として長浜バイオ大学が作成し、2回生の実習で実施している一番初級(対象:高校生〜大学2年程度)のテキスト「バイオ分野のデータベースの統合的な利用」の自習用動画シリーズ第四弾として「遺伝資源データベースSHIGENの使い方」をお送りします。SHIGENは実験研究に必要な遺伝資源材料の情報公開サイトを網羅的に調べて提供しています。","データベース,情報収集","http://youtu.be/zaiRneh7G5g","http://togotv.dbcls.jp/movie/100729SHIGEN.mov","http://doi.org/10.7875/togotv.2010.083","http://togotv.dbcls.jp/images/20100729_0.jpg","100729SHIGEN.mov","thumbnail/20100729_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"344","","togotv.2010.082","","20100728","eProtS(タンパク質構造百科事典)の使い方","本日の統合TVは、文部科学省委託研究開発事業「統合データベースプロジェクト」におけるアノテータ・キュレータ人材養成プログラムの一環として長浜バイオ大学が作成し、2回生の実習で実施している一番初級(対象:高校生〜大学2年程度)のテキスト「バイオ分野のデータベースの統合的な利用」の自習用動画シリーズ第三弾として「eProtS(タンパク質構造百科事典)の使い方」をお送りします。eProtSは、生物学的に重要なタンパク質を選び、その立体構造を表示するとともに、タンパク質の構造と機能についてわかりやすく解説したものです。","タンパク質,構造解析","http://youtu.be/XdAYqcyIbZY","http://togotv.dbcls.jp/movie/100728eprots.mov","http://doi.org/10.7875/togotv.2010.082","http://togotv.dbcls.jp/images/20100728_0.jpg","100728eprots.mov","thumbnail/20100728_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"343","","togotv.2010.081","","20100727","Avibaseの使い方","本日の統合TVは、文部科学省委託研究開発事業「統合データベースプロジェクト」におけるアノテータ・キュレータ人材養成プログラムの一環として長浜バイオ大学が作成し、2回生の実習で実施している一番初級(対象:高校生〜大学2年程度)のテキスト「バイオ分野のデータベースの統合的な利用」の自習用動画シリーズ第二弾として「Avibaseの使い方」をお送りします。Avibaseは全世界に生息する鳥に関するデータベースで、鳥の分布、分類、同義語、各言語での表記法や分布を見ることができます。 ","データベース","http://youtu.be/R5GE8gIn6oc","http://togotv.dbcls.jp/movie/100727avibase.mov","http://doi.org/10.7875/togotv.2010.081","http://togotv.dbcls.jp/images/20100727_0.jpg","100727avibase.mov","thumbnail/20100727_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"342","","togotv.2010.080","","20100726","「バイオ分野のデータベースの統合的な利用」講習テキストを入手する","本日の統合TVは、文部科学省委託研究開発事業「統合データベースプロジェクト」におけるアノテータ・キュレータ人材養成プログラムの一環として長浜バイオ大学が作成し、2回生の実習で実施している一番初級(対象:高校生〜大学2年程度)のテキスト「バイオ分野のデータベースの統合的な利用」の自習用動画シリーズ第一弾として「講習テキストを入手する」をお送りします。","情報収集","http://youtu.be/IgjLITh1QiM","http://togotv.dbcls.jp/movie/100726nagahama_text.mov","http://doi.org/10.7875/togotv.2010.080","http://togotv.dbcls.jp/images/20100726_0.jpg","100726nagahama_text.mov","thumbnail/20100726_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"341","","togotv.2010.079","","20100723","GSEA softwareの使い方 基本編","Gene Set Enrichment Analysis (GSEA) は、予め用意した遺伝子セットが異なる条件下でどう振舞うかを調べる手法です。これを利用し発現プロファイルを解釈することができます。詳しいアルゴリズムは、Gene Set Enrichment Analysis PNAS paper (pdf)を参照してください。GSEA softwareはBroad Instituteによって実装されたGSEAを行うソフトウェアです。今回は、GSEA softwareのGUI版の導入と簡単な解析を行い、GSEA softwareで何ができるかを示します。","遺伝子,発現解析,可視化,ソフトウェア","http://youtu.be/TPDir3MPlCg","http://togotv.dbcls.jp/movie/100723gsea1.mov","http://doi.org/10.7875/togotv.2010.079","http://togotv.dbcls.jp/images/20100723_0.jpg","100723gsea1.mov","thumbnail/20100723_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"340","","togotv.2010.078","","20100722","UCSC Genome Browser の使い方〜アノテーショントラック編〜","UCSC Genome Browserは、 米国カリフォルニア大学サンタクルーズ校(UCSC)が開発、維持しているゲノムブラウザ、ゲノムアノテーション閲覧システムです。ゲノムブラウザとはアノテーションが付加された遺伝子のゲノム上の位置やその周辺を表示するツールのことです。今回は以前番組で紹介した、UCSC Genome Browserを使った興味のある遺伝子の検索、結果の表示までの基本編、得られた表示結果の見方、使い方までの表示編、遺伝子の詳細情報と、配列の取得方法編に続いて、アノテーショントラックの設定方法について説明しています。","ゲノム,遺伝子,可視化,発現解析,UCSC","http://youtu.be/zWFjRbnmVHo","http://togotv.dbcls.jp/movie/100722ucsc_track.mov","http://doi.org/10.7875/togotv.2010.078","http://togotv.dbcls.jp/images/20100722_0.jpg","100722ucsc_track.mov","thumbnail/20100722_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"339","","togotv.2010.077","","20100720","生体分子の熱力学・構造データベースProTherm&ProNITの使い方","Protherm及びProNITは九州工業大学が独自に 文献から収集して構築した生化学分子の熱力学・構造のデータベースです。前者はタンパク質の野生型と変異体の熱力学的性質をまとめたデータベース、後者はタンパク質と核酸の熱力学的性質をまとめたデータベースです。 今回の動画は前半はProThermを、後半はProNITをこのデータベースの特徴を交えつつ紹介する内容です。","タンパク質,塩基配列,可視化,データベース","http://youtu.be/iLznx9gM6AE","http://togotv.dbcls.jp/movie/100720protherm.mov","http://doi.org/10.7875/togotv.2010.077","http://togotv.dbcls.jp/images/20100720_0.jpg","100720protherm.mov","thumbnail/20100720_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"338","","togotv.2010.076","","20100709","遺伝子発現情報を使い倒す〜Transcriptome Sequenceによる遺伝子発現解析の実際〜","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、DBCLSのリサーチアシスタントiNut による「遺伝子発現情報を使い倒す〜Transcriptome Sequenceによる遺伝子発現解析の実際〜」をお送りします。次世代シーケンサを使ったRNA-seqの解析例としてBowtie、TopHat、Cufflinksを使った方法について紹介しています。","実習, AJACS,NGS,RNA-seq","http://youtu.be/sYO5LbjluY4","http://togotv.dbcls.jp/movie/100709AJACS_DDBJing_iNut.mov","http://doi.org/10.7875/togotv.2010.076","http://togotv.dbcls.jp/images/20100709_0.jpg","100709AJACS_DDBJing_iNut.mov","thumbnail/20100709_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"337","","togotv.2010.075","","20100708","遺伝子発現情報を使い倒す〜発現統合のサービスを使い倒す〜","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、DBCLS坊農 秀雅 特任准教授による「遺伝子発現情報を使い倒す〜発現統合のサービスを使い倒す〜」をお送りします。現在鋭意開発中の発現情報のリファレンスを提供するサービスRefEXや、遺伝子発現バンク(GEO)目次、Bodymap-XS、植物ESTボディーマップなど、DBCLSで提供している発現情報に関連する各種サービスについて紹介しています。","実習, AJACS,発現解析,遺伝子,GEO","http://youtu.be/3-cmydDeszE","http://togotv.dbcls.jp/movie/100708AJACS_DDBJ_bono.mov","http://doi.org/10.7875/togotv.2010.075","http://togotv.dbcls.jp/images/20100708_0.jpg","100708AJACS_DDBJ_bono.mov","thumbnail/20100708_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"336","","togotv.2010.074","","20100707","遺伝子発現情報を使い倒す〜統合TVを使い倒す〜","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、DBCLS小野浩雅 特任技術専門員による「遺伝子発現情報を使い倒す〜統合TVを使い倒す〜」をお送りします。最初は遺伝子発現のセッションをとりまとめているDBCLS 坊農秀雅 特任准教授による概要説明、2分30秒から統合TVと統合TV Curatedの解説です。","実習, AJACS,DBCLS","http://youtu.be/dIOJdbwDs_U","http://togotv.dbcls.jp/movie/100707AJACS19_DDBJ22hono.mov","http://doi.org/10.7875/togotv.2010.074","http://togotv.dbcls.jp/images/20100707_0.jpg","100707AJACS19_DDBJ22hono.mov","thumbnail/20100707_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"335","","togotv.2010.073","","20100706","TogoProtの使い方〜検索と連携〜","TogoProtはライフサイエンス統合データベースセンター(DBCLS)が提供するタンパク質横断検索サービスです。TogoProtの特徴は複数のデータベースを横断して検索を行うことにより、各データベース間の結果を比較し、またタンパク質の立体構造やタンパク間相互作用などタンパク質の構造と機能をまとめて検索できるという利点も存在します。また、Jabionとも連携しています。","タンパク質,可視化,DBCLS,データベース","http://youtu.be/4POz9O9ots0","http://togotv.dbcls.jp/movie/100706togoprot.mov","http://doi.org/10.7875/togotv.2010.073","http://togotv.dbcls.jp/images/20100706_0.jpg","100706togoprot.mov","thumbnail/20100706_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"334","","togotv.2010.072","","20100705","相同性検索と系統解析 〜BLASTとClustalW〜","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、国立遺伝学研究所中村 保一 教授による「相同性検索と系統解析〜BLASTとClustalW〜」をお送りします。","実習, AJACS,配列解析","http://youtu.be/ZH9z-ZgEA1Q","http://togotv.dbcls.jp/movie/100705DDBJing_yn2.mov","http://doi.org/10.7875/togotv.2010.072","http://togotv.dbcls.jp/images/20100705_0.jpg","100705DDBJing_yn2.mov","thumbnail/20100705_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"333","","togotv.2010.071","","20100704","SAKURAを用いた塩基配列登録の方法","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、DDBJ 小菅 武英 アノテータによる「SAKURAを用いた塩基配列登録の方法」をお送りします。
【注: 2016年現在、このサービスは運用されていません。】","実習, AJACS,DDBJ,遺伝子,登録方法","http://youtu.be/NZi5V1hLauk","http://togotv.dbcls.jp/movie/100704DDBJing_kosuge.mov","http://doi.org/10.7875/togotv.2010.071","http://togotv.dbcls.jp/images/20100704_0.jpg","100704DDBJing_kosuge.mov","thumbnail/20100704_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"332","","togotv.2010.070","","20100703","文献執筆支援ツールの紹介","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、DBCLS 山本泰智 特任研究員による「文献執筆支援ツールの紹介」をお送りします。","実習, AJACS,文献検索,文章執筆","http://youtu.be/nOTfUbVWYE8","http://togotv.dbcls.jp/movie/100703DDBJing_yy.mov","http://doi.org/10.7875/togotv.2010.070","http://togotv.dbcls.jp/images/20100703_0.jpg","100703DDBJing_yy.mov","thumbnail/20100703_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"331","","togotv.2010.069","","20100702","統合データベースのサービス紹介〜カタログ・アーカイブ・横断検索を中心に〜","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、DBCLS 川本祥子 特任准教授による「統合データベースのサービス紹介〜カタログ・アーカイブ・横断検索を中心に〜」をお送りします。","実習, AJACS,データベース","http://youtu.be/hOe_hJEUvtM","http://togotv.dbcls.jp/movie/100702DDBJing_sk.mov","http://doi.org/10.7875/togotv.2010.069","http://togotv.dbcls.jp/images/20100702_0.jpg","100702DDBJing_sk.mov","thumbnail/20100702_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"330","","togotv.2010.068","","20100701","統合データベースプロジェクトの紹介","本日の統合TVは、2010年6月23, 24日にライフサイエンス統合データベースセンター(DBCLS)にて開催されたAJACS & 第22回DDBJing 講習会 in 東京より、DBCLS 高祖歩美 特任研究員による「統合データベースプロジェクトの紹介」をお送りします。","実習, AJACS,DBCLS","http://youtu.be/MDpRj4uveUg","http://togotv.dbcls.jp/movie/100701DDBJing_koso.mov","http://doi.org/10.7875/togotv.2010.068","http://togotv.dbcls.jp/images/20100701_0.jpg","100701DDBJing_koso.mov","thumbnail/20100701_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"329","","togotv.2010.067","","20100629","分子可視化ソフト『Chimera』の使い方 2010 応用編","ChimeraはPDBファイルなどのデータを元に生体高分子(主にタンパク質)の立体構造を3D画像で表示する分子可視化ソフトです。 今回の番組では、基本編の内容を踏まえ、より高度な操作について解説しています。","タンパク質,可視化,構造解析,PDB","http://youtu.be/x4_WFQr_acY","http://togotv.dbcls.jp/movie/100629advance.mov","http://doi.org/10.7875/togotv.2010.067","http://togotv.dbcls.jp/images/20100629_0.jpg","100629advance.mov","thumbnail/20100629_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"328","","togotv.2010.066","","20100624","MiGAPの使い方〜導入と基本操作〜","MiGAP(Microbial Genome Annotation Pipeline)はライフサイエンス統合データベースセンター(DBCLS)が提供する塩基配列解析サービスです。MiGAPの特徴は原核生物ゲノム塩基配列に対しアノテーション(注釈)をつけることができることです。本サービスは、塩基配列解析にMetaGeneAnnotatorとGlimmerとRNAmmerを、配列相同性解析にNCBI BLASTを使用しています。 今回はMiGAPのサンプルデータを用いて解説を行います。","塩基配列,配列解析,可視化,DBCLS","http://youtu.be/oXAEZgoc5Eo","http://togotv.dbcls.jp/movie/100624migap.mov","http://doi.org/10.7875/togotv.2010.066","http://togotv.dbcls.jp/images/20100624_0.jpg","100624migap.mov","thumbnail/20100624_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"327","","togotv.2010.065","","20100622","JCGGDBの使い方","JCGGDB は質量分析による糖鎖構造解析のスペクトルや、レクチン-糖鎖相互作用のプロファイリング、糖鎖関連遺伝子など、糖鎖に関係するさまざまなデータベースを集めたウェブページです。 今回は横断検索にかけた結果を通して、データベースの種類と特徴について説明します。","化合物,遺伝子","http://youtu.be/ct9kfYo0HTg","http://togotv.dbcls.jp/movie/100622jcggdb.mov","http://doi.org/10.7875/togotv.2010.065","http://togotv.dbcls.jp/images/20100622_0.jpg","","thumbnail/20100622_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"326","","togotv.2010.064","","20100618","はじめてのRefEx(Reference Expression dataset)","RefEx(Reference Expression dataset) は、ライフサイエンス統合データベースセンター(DBCLS)によるヒトやマウス遺伝子の解剖学的な発現パターンデータの統合サイトです。4種類の発現データ (EST, GeneChip, iAFLP, CAGE)に対して、NCBIのRefSeq(れふしーく)でデータを整理し、遺伝子発現データ解析のリファレンス(参照)データセットを維持すべく、開発を進めています。対象生物種はヒトとマウスのみですが、複数の手法による客観的な遺伝子発現データの比較が可能となっているのが特徴です。今回は、「検索」ボタンから「Descriptionから遺伝子ファミリー(Interpro ID)を検索」する機能を用いて、Wntスーパーファミリーを付与されたInterProのアノテーションの中から検索し(IPR005817 Wnt superfamily)、Wntファミリーに属する遺伝子群をその発現パターンと共に表示し可視化する方法を説明しています。なお、マップされる染色体の位置の順番に並び替えたり、ウェブブラウザの「文字を縮小」する機能を利用して発現パターンを俯瞰することができます。次に、嚢胞性線維症(「のうほうせいせんいしょう」と読みます)の責任領域としてしられている7q31.2領域のエントリを発現の高い順に表示する方法を紹介します。さらに、その中のNM_000245 met proto-oncogeneに関して遺伝子の情報の詳細(絶対発現量、相対発現量、3D人体マップ上での発現量のヒートマップ表示)をブラウズする方法を説明しています。","遺伝子,発現解析,可視化,DBCLS,データベース,CAGE","http://youtu.be/5vvlo5m5fms","http://togotv.dbcls.jp/movie/100618RefEx.mov","http://doi.org/10.7875/togotv.2010.064","http://togotv.dbcls.jp/images/20100618_0.jpg","100618RefEx.mov","thumbnail/20100618_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"325","","togotv.2010.063","","20100617","今日からはじめるDDBJ Read Annotation Pipeline","DDBJ Read Annotation Pipelineは国立遺伝学研究所のDDBJが開発・提供している新型シーケンサの出力データを自動で解析してくれるツールです。このツールの特徴として、1.ボタン操作とテキスト入力のみで解析可能 2. 論文用の基本統計量や図を自動生成 3. 国立遺伝学研究所のスーパーコンピュータを利用して高速化などが挙げられます。現在、Reference Genome Mappingとde novo Assembly解析を行なうことができます。今回の番組では、例としてコシヒカリ(Oryza sativa japonica)のデータを用いて、Reference Genome Mappingの方法を紹介しています。 ","NGS,ゲノム,配列解析,塩基配列, スパコン,DDBJ","http://youtu.be/E548JQ30SSQ","http://togotv.dbcls.jp/movie/100617DRA_pipeline.mov","http://doi.org/10.7875/togotv.2010.063","http://togotv.dbcls.jp/images/20100617_0.jpg","100617DRA_pipeline.mov","thumbnail/20100617_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"324","","togotv.2010.062","","20100611","統合データベース講習会: KazusaMartの使い方@AJACS湘南3","本日の統合TVは、2010年6月4日に日本大学生物資源科学部にて開催された統合データベース講習会:AJACS湘南3より、かずさDNA研究所藤澤貴智 研究員による「KazusaMartの使い方」をお送りします。","実習, AJACS,遺伝子,データベース","http://youtu.be/DgwqMY9huQc","http://togotv.dbcls.jp/movie/100611AJACS18_tf.mov","http://doi.org/10.7875/togotv.2010.062","http://togotv.dbcls.jp/images/20100611_0.jpg","100611AJACS18_tf.mov","thumbnail/20100611_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"323","","togotv.2010.061","","20100610","PubMed Centralの使い方","PubMedは米国立医学図書館(National Library of Medicine)が維持・管理している文献情報データベースで、2010年4月でおよそ 2,000万件の文献情報を提供しており、検索が月におよそ7,000 万件と生命科学分野で最も利用されているウェブサービスの1つです。その中でPubmed Central (PMC)は、書誌情報、アブストラクトに加えて全文が無料(フリー、オープンアクセス)で公開されている論文を収録・提供しています。PubMed Centralの件数でおよそ 200 万件、雑誌のサイトで全文が提供されているものも含めると300 万件の文献で全文を読むことができます。今回の統合TVでは、PubMed Centralを使った文献検索の基本と知っておくと便利な小技についてご紹介します。","文献検索,NCBI,情報収集","http://youtu.be/KdlYBiP24HI","http://togotv.dbcls.jp/movie/100610PMC.mov","http://doi.org/10.7875/togotv.2010.061","http://togotv.dbcls.jp/images/20100610_0.jpg","100610PMC.mov","thumbnail/20100610_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"322","","togotv.2010.060","","20100609","STRINGの使い方 応用編","STRINGの使い方 〜基本編〜 では、タンパク質の名前からネットワークを表示させる方法を解説しました。今回は、このような巨大なネットワークを、パラメーターの変更、クラスタリング、ネットワークウォーキングを用いて、整理する方法を紹介します。","タンパク質,可視化","http://youtu.be/gFX9DOAdBSs","http://togotv.dbcls.jp/movie/100609string_dev.mov","http://doi.org/10.7875/togotv.2010.060","http://togotv.dbcls.jp/images/20100609_0.jpg","100609string_dev.mov","thumbnail/20100609_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"321","","togotv.2010.059","","20100608","分子可視化ソフト『Chimera』の使い方 2010","ChimeraはPDBファイルなどのデータを元に生体高分子(主にタンパク質)の立体構造を3D画像で表示する分子可視化ソフトです。今回の番組では、このソフトの使い方を、様々な用途別に細かく解説しています。","タンパク質,可視化,構造解析,ソフトウェア,PDB","http://youtu.be/FcE-CDxk20A","http://togotv.dbcls.jp/movie/100608chimera-basic-part2.mov","http://doi.org/10.7875/togotv.2010.059","http://togotv.dbcls.jp/images/20100608_0.jpg","100608chimera-basic-part2.mov","thumbnail/20100608_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"320","","togotv.2010.058","","20100602","STRINGの使い方 基本編","STRING はタンパク質同士の相互作用を視覚的にわかりやすく提供するツールです。相互作用があることの証拠は、文献や実験の結果、STRING独自の予測機能など多岐に渡っています。それぞれに関して詳細な情報を簡単に得ることができます。今回は、さまざまな機能があるため、基本的な使い方に絞って例を交えながら説明します。","タンパク質,可視化,ウェブツール","http://youtu.be/zbI3oysG1sc","http://togotv.dbcls.jp/movie/100602string_basic.mov","http://doi.org/10.7875/togotv.2010.058","http://togotv.dbcls.jp/images/20100602_0.jpg","100602string_basic.mov","thumbnail/20100602_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"319","","togotv.2010.057","","20100526","コモンズに関わる法的課題","本日は、2010年5月15日に行われた、情報知識学会第18回(2010年度)年次大会記念シンポジウム「科学技術コモンズと情報知識学の挑戦」から、クリエイティブ・コモンズ・ジャパン 野口祐子氏による特別講演「コモンズに関わる法的課題」をお送りします。","講演,クリエイティブ・コモンズ","http://youtu.be/ev9q3B9E1lE","http://togotv.dbcls.jp/movie/100526jsik_noguchi.mov","http://doi.org/10.7875/togotv.2010.057","http://togotv.dbcls.jp/images/20100526_0.jpg","100526jsik_noguchi.mov","thumbnail/20100526_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"318","","togotv.2010.056","","20100525","コモンズ構築と利用のための知識表現","本日は、2010年5月15日に行われた、情報知識学会 第18回(2010年度)年次大会記念シンポジウム 「科学技術コモンズと情報知識学の挑戦」から、東京大学 Steven Kraines 准教授による招待講演「コモンズ構築と利用のための知識表現」をお送りします。","講演,クリエイティブ・コモンズ","http://youtu.be/tOWnYsB3V8w","http://togotv.dbcls.jp/movie/100525jsik_Kraines.mov","http://doi.org/10.7875/togotv.2010.056","http://togotv.dbcls.jp/images/20100525_0.jpg","100525jsik_Kraines.mov","thumbnail/20100525_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"317","","togotv.2010.055","","20100524","材料科学におけるデータベース共通プラットフォームの開発と課題","本日は、2010年5月15日に行われた、情報知識学会 第18回(2010年度)年次大会記念シンポジウム 「科学技術コモンズと情報知識学の挑戦」から、東洋大学 芦野俊宏教授による招待講演「材料科学におけるデータベース共通プラットフォームの開発と課題」をお送りします。","講演","http://youtu.be/CN0GYSYvoLg","http://togotv.dbcls.jp/movie/100524jsik_ashino.mov","http://doi.org/10.7875/togotv.2010.055","http://togotv.dbcls.jp/images/20100524_0.jpg","100524jsik_ashino.mov","thumbnail/20100524_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"316","","togotv.2010.054","","20100523","ライフサイエンスにおける統合データベースの構築と課題","本日は、2010年5月15日に行われた、情報知識学会 第18回(2010年度)年次大会記念シンポジウム 「科学技術コモンズと情報知識学の挑戦」から、ライフサイエンス統合データベースセンター 高木利久センター長による招待講演「ライフサイエンスにおける統合データベースの構築と課題」をお送りします。","講演,DBCLS","http://youtu.be/1QlxsMDp060","http://togotv.dbcls.jp/movie/100523jsik_takagi.mov","http://doi.org/10.7875/togotv.2010.054","http://togotv.dbcls.jp/images/20100523_0.jpg","100523jsik_takagi.mov","thumbnail/20100523_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"315","","togotv.2010.053","","20100522","科学技術コモンズとオープンアクセス","本日は、2010年5月15日に行われた、情報知識学会 第18回(2010年度)年次大会記念シンポジウム 「科学技術コモンズと情報知識学の挑戦」から、愛知大学 時実象一教授による基調講演「科学技術コモンズとオープンアクセス」をお送りします。","講演,クリエイティブ・コモンズ","http://youtu.be/CkDaSc9Ds90","http://togotv.dbcls.jp/movie/100522jsik_tokizane.mov","http://doi.org/10.7875/togotv.2010.053","http://togotv.dbcls.jp/images/20100522_0.jpg","100522jsik_tokizane.mov","thumbnail/20100522_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"314","","togotv.2010.052","","20100521","科学技術コモンズと情報知識学への期待","本日は、2010年5月15日に行われた、情報知識学会 第18回(2010年度)年次大会記念シンポジウム 「科学技術コモンズと情報知識学の挑戦」から、国立国会図書館 長尾真館長による基調講演「科学技術コモンズと情報知識学への期待」をお送りします。","講演,クリエイティブ・コモンズ","http://youtu.be/RpZ-Lq0Lc_I","http://togotv.dbcls.jp/movie/100521jsik_nagao.mov","http://doi.org/10.7875/togotv.2010.052","http://togotv.dbcls.jp/images/20100521_0.jpg","100521jsik_nagao.mov","thumbnail/20100521_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"313","","togotv.2010.051","","20100520","科学技術コモンズの構築に向けて","本日は、2010年5月15日に行われた、情報知識学会 第18回(2010年度)年次大会記念シンポジウム 「科学技術コモンズと情報知識学の挑戦」から、東京大学 岩田修一教授による開会挨拶「科学技術コモンズの構築に向けて」をお送りします。","講演,クリエイティブ・コモンズ","http://youtu.be/jQFIfsIHsfA","http://togotv.dbcls.jp/movie/100520jsik_iwata.mov","http://doi.org/10.7875/togotv.2010.051","http://togotv.dbcls.jp/images/20100520_0.jpg","100520jsik_iwata.mov","thumbnail/20100520_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"312","","togotv.2010.050","","20100519","Website for Alternative Splicing Predictionの使い方","Website for Alternative Splicing Prediction は、DNA塩基配列上の""Splicing Code""という独自の判定基準と組織から得られた転写産物の情報を用いて、新規のエキソンやそれらを含む組織特異的なsplicingを予測するツールです。このツールについては『Deciphering the splicing code』(スプライシングコードを解読する) というタイトルで2010年5月6日号のNatureに掲載されたものです。今回は、既に行われた予測結果を参照する方法と入力した塩基配列に対して新規に予測する方法について例を交えながら紹介します","ゲノム,遺伝子,塩基配列,配列解析,ウェブツール","http://youtu.be/ZlUu_upK7wk","http://togotv.dbcls.jp/movie/100519alternative_splicing.mov","http://doi.org/10.7875/togotv.2010.050","http://togotv.dbcls.jp/images/20100519_0.jpg","100519alternative_splicing.mov","thumbnail/20100519_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"311","","togotv.2010.049","","20100514","統合データベース講演会 統合データベースプロジェクト:オープンで知のめぐりの良い創薬研究を目指して","本日の統合TVは 2010年5月12日に明治薬科大学で開催された統合データベース講演会から、ライフサイエンス統合データベースセンター坊農秀雅 による「統合データベースプロジェクト:オープンで知のめぐりの良い創薬研究を目指して」をお送りします。文部科学省による統合データベースプロジェクトの中核機関としてライフサイエンス統合データベースセンターが取り組んでいるライフサイエンス分野のデータベースを効率よく利用するためのインフラ整備の意義や提供するサービスについて紹介するとともに、ライフサイエンス分野の現状とその問題点、DBCLSが提案する解決案について最新の知見にもとづいて説明しています。 約53分です。","講演,DBCLS","http://youtu.be/lRCUBmdqibE","http://togotv.dbcls.jp/movie/100514bono_meijiyakuka.mov","http://doi.org/10.7875/togotv.2010.049","http://togotv.dbcls.jp/images/20100514_0.jpg","100514bono_meijiyakuka.mov","thumbnail/20100514_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"310","","togotv.2010.048","","20100513","Ensembl Tips ArrayExpress の遺伝子発現情報を表示する","Ensemblは、 The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。今回はEBI(European Bioinformatics Institute) が提供・維持管理している遺伝子発現情報のデータベースである、ArrayExpressのデータをEnsemblに表示する方法を紹介します。","発現解析,遺伝子,Ensembl","http://youtu.be/2Q2MBX-1fXw","http://togotv.dbcls.jp/movie/100513ensemblarrayexpress.mov","http://doi.org/10.7875/togotv.2010.048","http://togotv.dbcls.jp/images/20100513_0.jpg","100513ensemblarrayexpress.mov","thumbnail/20100513_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"309","","togotv.2010.047","","20100512","Copyright in the Digital Age and Its Impact on Scientific Data Sharing
(日本語字幕付き)","2009年10月5日に開催された シンポジウム「科学における情報の上手な権利化と共有化」 (東京大学弥生講堂一条ホール)におけるローレンス・レッシグ教授(Lawrence Lessig, Harvard Law School, Professor)の講演”Copyright in the Digital Age and Its Impact on Scientific Data Sharing”の字幕付き動画です。情報や創作物の流通が安価で簡便になったインターネット時代における著作権のあり方、中でも科学の発展に適した著作権のあり方についてご講演いただきました。内容は、これからの科学の発展にも大きく影響するテーマだと思いますので、より多くの方にご覧いだけるよう英語講演に日本語の字幕を付けました。","講演,English,クリエイティブ・コモンズ","http://youtu.be/e3rcpRtTiP0","http://togotv.dbcls.jp/movie/100512lessig.mov","http://doi.org/10.7875/togotv.2010.047","http://togotv.dbcls.jp/images/20100512_0.jpg","100512lessig.mov","thumbnail/20100512_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"308","","togotv.2010.046","","20100511","Primer BLASTの使い方","Primer BLAST(ぷらいまーブラストと発音します)は、与えられた配列をPCRで増幅するためのPrimer設計ツールです。同様のツールとしてはPrimer3が挙げられますが、Primer BLASTの良いところはエキソン・イントロン境界を挟むよう指定できる点やPrimerの配列特異性をあらかじめ考慮して設計できる点、またその確認が同ツールの中でできる点などがあります。 ここでは、例としてヒトの脂肪代謝遺伝子peroxisome proliferator-activated receptor(PPAR) gammaの塩基配列をサンプル配列として、設定可能なパラメータ項目の説明を交えながらPrimer BLASTの使い方を紹介します。","塩基配列,配列解析,NCBI,ウェブツール","http://youtu.be/UL94wypR73o","http://togotv.dbcls.jp/movie/100511PrimerBLAST.mov","http://doi.org/10.7875/togotv.2010.046","http://togotv.dbcls.jp/images/20100511_0.jpg","100511PrimerBLAST.mov","thumbnail/20100511_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"307","","togotv.2010.045","","20100510","CLC Sequence Viewerを使い倒す〜外部データの取り込みから制限酵素切断地図の作成まで〜","CLC Sequence ViewerはCLC Bio社が提供するフリーの統合解析環境で、マルチプルアラインメントの作成・編集、系統樹描写、様々なフォーマットに応じた出力機能など多機能を備えています。また、Windows, MacOSX, UNIXとマルチプラットフォームで動作します。 今回はCLC Sequence Viewerの制限酵素切断部位検索機能を用いてヒトFerrochelataseの制限酵素切断地図を作成し、画像として外部出力する方法を紹介します。今回使用した塩基配列情報はdbgetから見ることが出来ます。","環境設定,塩基配列,配列解析,文献検索,ウェブツール,アラインメント","http://youtu.be/Xl2ZKofDYYk","http://togotv.dbcls.jp/movie/100510sv03.mov","http://doi.org/10.7875/togotv.2010.045","http://togotv.dbcls.jp/images/20100510_0.jpg","100510sv03.mov","thumbnail/20100510_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"306","","togotv.2010.044","","20100507","Pfamを使ってタンパク質のドメインを調べる","Pfamとはタンパク質ドメインのデータベースです。検索システムにはHMMERが使われており、これにより高速で精度の高い配列解析を行うことが出来ます。今回は、HMMERが組み込まれているInterProScanを使うことにより配列のドメイン検索を行い、そこからPfamを使用してドメインの情報を調べています。サンプルデータとして、ES細胞の分化多能性を支えるHomeoboxタンパク質であるNanogのアミノ酸配列を使って説明しています。また、動画中で簡単に紹介しているJalViewは、Jalviewを使い倒す〜配列解析・系統樹編〜で詳しく紹介されています。こちらもぜひ御覧下さい。","タンパク質,構造解析","http://youtu.be/JgSXAfJen30","http://togotv.dbcls.jp/movie/100507pfam.mov","http://doi.org/10.7875/togotv.2010.044","http://togotv.dbcls.jp/images/20100507_0.jpg","100507pfam.mov","thumbnail/20100507_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"305","","togotv.2010.043","","20100430","日本語バイオポータルサイトJabionを使い倒す 〜文献検索編〜 2010","Jabion(ジャビオン、と発音します)は、一般社会および専門家の両方を対象とし、生物学分野における分かりやすく正しい情報の提供を目的としたわが国初の日本語バイオポータルサイトです( 総説PDF )。このサイトは、一般向けとして生物学用語や科学ニュース等を分かりやすく解説すると同時に、専門家向けとして最新の研究動向や日本語での利用が可能な文献検索やゲノム情報などを提供しています。ちなみに、Jabionの名前の由来は、日本における生物学のトップサイトを目指す意味で、日本(Japan)と生物学(Biology)の頭文字からもじって命名されました。バイオポータルサイトというだけあって、様々なコンテンツがありますが、今回はまず「PubMed日本語検索(文献検索)」の機能を紹介します。Jabionの文献検索では、日本語キーワードを入力するだけで該当する英語の専門用語に変換したのちにPubMed検索を行うことができます。変換候補が複数ある場合には任意のものを検索対象とすることも可能です。また、検索結果は出版年順だけでなく、ジャーナルごとの被引用率などを用いて著名な文献が優先的にヒットする仕組みを採用しているのが特徴です。","文献検索,情報収集","http://youtu.be/W-yOU6yY4rY","http://togotv.dbcls.jp/movie/100430jabionpaper.mov","http://doi.org/10.7875/togotv.2010.043","http://togotv.dbcls.jp/images/20100430_0.jpg","100430jabionpaper.mov","thumbnail/20100430_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"304","","togotv.2010.042","","20100420","Ensembl tips 〜DBCLSで提供しているゲノムアノテーションを表示する〜 2010","Ensemblは、 The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。第四弾の今回は、DBCLSで提供しているゲノムアノテーションをDAS(Distributed Annotation System)を用いてEnsemblに追加して表示する方法について紹介しています。今回はヒトのcDNA配列アノテーション(H-Inv DB)と、ヒトのbodymap EST、マウスのRepresentative Transcript set(FANTOM3)を表示します。","ゲノム,遺伝子,発現解析,Ensembl","http://youtu.be/Zk9xs6d3rz4","http://togotv.dbcls.jp/movie/100420ensembldas.mov","http://doi.org/10.7875/togotv.2010.042","http://togotv.dbcls.jp/images/20100420_0.jpg","100420ensembldas.mov","thumbnail/20100420_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"303","","togotv.2010.041","","20100416","UCSC VisiGeneの使い方","UCSC Genome Browserは、 米国カリフォルニア大学サンタクルーズ校(UCSC)が開発、維持しているゲノムブラウザ、ゲノムアノテーション閲覧システムです。ゲノムブラウザとはアノテーションが付加された遺伝子のゲノム上の位置やその周辺を表示するツールのことです。UCSC Genome Browserのコンテンツとしては以前の番組でも紹介した高速アラインメントツールBLATや遺伝子間の関連性を探索するGene Sorterなどがありますが、今回はin situハイブリダイゼーション (ISH)の画像データを検索・閲覧できるVisiGeneについて紹介します。UCSC VisiGeneを使うことで、生体内におけるmRNAの局在を画像で閲覧することができ、またそれに関する論文などの詳細情報も得ることができます。","発現解析,可視化,遺伝子,UCSC","http://youtu.be/BRojPav9t30","http://togotv.dbcls.jp/movie/100416VisiGene.mov","http://doi.org/10.7875/togotv.2010.041","http://togotv.dbcls.jp/images/20100416_0.jpg","100416VisiGene.mov","thumbnail/20100416_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"302","","togotv.2010.040","","20100415","NCBI BLASTの使い方 基本編 2010","NCBI BLAST(えぬしーびーあいブラストと発音します)は、問い合わせ配列に類似した配列をデータベース中から検索するツールです。BLASTの名称はBasic Local Alignment Search Toolの頭文字に由来しており、配列解析には欠かせない、基本的なツールです。ここでは、DNAデータベース (DDBJ/EMBL/GenBank=INSD) 総覧と検索に収録されている塩基配列を問い合わせ配列として、nr/ntデータベース(冗長性を排した塩基配列データベース)に対して検索を行い、機能を推定する使い方を説明します。もちろん、塩基配列だけではなく、アミノ酸配列に対しても使えます。","塩基配列,配列解析,NCBI,アミノ酸","http://youtu.be/TO5IjNglyyA","http://togotv.dbcls.jp/movie/100415BLASTb.mov","http://doi.org/10.7875/togotv.2010.040","http://togotv.dbcls.jp/images/20100415_0.jpg","100415BLASTb.mov","thumbnail/20100415_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"301","","togotv.2010.039","","20100414","統合データベース講習会AJACS本郷6「in silicoな実験を広める仕事」","本日は2010年3月19日に行われた統合データベース講習会AJACS本郷6からライフサイエンス統合データベースセンター(DBCLS) リサーチアシスタント @iNut による「in silicoな実験を広める仕事」をお送りします。 実験系の研究室に所属している演者が、コンピュータを実験道具として使いこなして「実験」するまでに至った経緯とin silicoな「実験」の実際をデモを交えながら紹介しています。","実習, AJACS","http://youtu.be/UqhgxSz8qgs","http://togotv.dbcls.jp/movie/100414AJACS17_iNut.mov","http://doi.org/10.7875/togotv.2010.039","http://togotv.dbcls.jp/images/20100414_0.jpg","100414AJACS17_iNut.mov","thumbnail/20100414_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"300","","togotv.2010.038","","20100413","統合データベース講習会AJACS本郷6「統合TVのシステムを良くする仕事」","本日は2010年3月19日に行われた統合データベース講習会AJACS本郷6からライフサイエンス統合データベースセンター(DBCLS) リサーチアシスタント @y_benjo による「統合TVのシステムを良くする仕事」をお送りします。統合ホームページにおいて提供されている統合TVのアクセスログ収集・分析、コンテンツ推薦のしくみ、検索クエリ分析といった統合TVを使いやすくするための縁の下の力持ち的活動について紹介しています。","実習, AJACS","http://youtu.be/LXIXjOnvA_I","http://togotv.dbcls.jp/movie/100413AJACS17_benjo.mov","http://doi.org/10.7875/togotv.2010.038","http://togotv.dbcls.jp/images/20100413_0.jpg","100413AJACS17_benjo.mov","thumbnail/20100413_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"299","","togotv.2010.037","","20100412","統合データベース講習会AJACS本郷6「統合TVのコンテンツを作る仕事」","本日は2010年3月19日に行われた統合データベース講習会AJACS本郷6からライフサイエンス統合データベースセンター(DBCLS) リサーチアシスタント 奥田 裕樹 による「統合TVのコンテンツを作る仕事」をお送りします。統合ホームページにおいて提供されている統合TVの番組コンテンツの制作現場の実際とその概要・意義についてデモを交えながら紹介しています。","実習, AJACS","http://youtu.be/izi8ZtEtCYY","http://togotv.dbcls.jp/movie/100412AJACS17_yag.mov","http://doi.org/10.7875/togotv.2010.037","http://togotv.dbcls.jp/images/20100412_0.jpg","100412AJACS17_yag.mov","thumbnail/20100412_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"298","","togotv.2010.036","","20100411","統合データベース講習会AJACS本郷6「twitterとライフサイエンス分野の橋渡しをする仕事」","本日は2010年3月19日に行われた統合データベース講習会AJACS本郷6からライフサイエンス統合データベースセンター(DBCLS) リサーチアシスタント @mickey24 による「twitterとライフサイエンス分野の橋渡しをする仕事」をお送りします。統合ホームページにおいて提供されているアナトモグラフィー(BodyParts3Dのデータを利用して人体臓器の3Dモデル画像をWebブラウザで手軽に作成できるWebサービス)するサービスの概要および維持・管理の実際について紹介しています。","実習, AJACS","http://youtu.be/_tSCPXngxog","http://togotv.dbcls.jp/movie/100411AJACS17_mickey.mov","http://doi.org/10.7875/togotv.2010.036","http://togotv.dbcls.jp/images/20100411_0.jpg","100411AJACS17_mickey.mov","thumbnail/20100411_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"297","","togotv.2010.035","","20100410","統合データベース講習会AJACS本郷6「蛋白質核酸酵素のテキストデータを自然言語処理する仕事」","本日は2010年3月19日に行われた統合データベース講習会AJACS本郷6からライフサイエンス統合データベースセンター(DBCLS) リサーチアシスタント 吉田 康久 による「蛋白質核酸酵素のテキストデータを自然言語処理する仕事」をお送りします。生命科学分野における自然言語処理や「辞書」の重要性、また統合ホームページにおいて提供されている蛋白質核酸酵素 全文検索から得られたテキストデータから専門用語の特徴語を抽出する仕組みについて紹介しています。","実習, AJACS","http://youtu.be/6fPKz829aWQ","http://togotv.dbcls.jp/movie/100410AJACS17_syou.mov","http://doi.org/10.7875/togotv.2010.035","http://togotv.dbcls.jp/images/20100410_0.jpg","100410AJACS17_syou.mov","thumbnail/20100410_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"296","","togotv.2010.034","","20100409","統合データベース講習会AJACS本郷6「データベースカタログ・横断検索を維持する仕事」2","本日は2010年3月19日に行われた統合データベース講習会AJACS本郷6からライフサイエンス統合データベースセンター(DBCLS) リサーチアシスタント 横山 貴央 による「データベースカタログ・横断検索を維持する仕事」2をお送りします。統合ホームページにおいて提供されている、国内外のライフサイエンス系データベースを横断検索するサービスの概要および維持・管理の実際について紹介しています。","実習, AJACS","http://youtu.be/K-w6rg7oRVI","http://togotv.dbcls.jp/movie/100409AJACS17_wakuteka.mov","http://doi.org/10.7875/togotv.2010.034","http://togotv.dbcls.jp/images/20100409_0.jpg","100409AJACS17_wakuteka.mov","thumbnail/20100409_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"295","","togotv.2010.033","","20100408","統合データベース講習会AJACS本郷6「データベースカタログ・横断検索を維持する仕事」","本日は2010年3月19日に行われた統合データベース講習会AJACS本郷6からライフサイエンス統合データベースセンター(DBCLS) リサーチアシスタント 林 和弘 による「データベースカタログ・横断検索を維持する仕事」をお送りします。統合ホームページにおいて公開されている、国内外のライフサイエンス系データベースの情報を提供するデータベースカタログの維持・管理における概要およびその実際について紹介しています。","実習, AJACS","http://youtu.be/YTZYQF8oolo","http://togotv.dbcls.jp/movie/100408AJACS17_hayashi.mov","http://doi.org/10.7875/togotv.2010.033","http://togotv.dbcls.jp/images/20100408_0.jpg","100408AJACS17_hayashi.mov","thumbnail/20100408_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"294","","togotv.2010.032","","20100407","「はじめに:統合データベースプロジェクトとは?」@AJACS本郷6","本日は2010年3月19日に行われた統合データベース講習会AJACS本郷6からライフサイエンス統合データベースセンター(DBCLS)坊農秀雅 特任准教授による「はじめに:統合データベースプロジェクトとは?」をお送りします。文部科学省による統合データベースプロジェクトの中核機関としてライフサイエンス統合データベースセンターが取り組んでいるライフサイエンス分野のデータベースを効率よく利用するためのインフラ整備の意義および概要について紹介しています。","実習, AJACS","http://youtu.be/aB4ZPyoZa04","http://togotv.dbcls.jp/movie/100407AJACS17_bono.mov","http://doi.org/10.7875/togotv.2010.032","http://togotv.dbcls.jp/images/20100407_0.jpg","100407AJACS17_bono.mov","thumbnail/20100407_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"293","","togotv.2010.031","","20100405","CLC Sequence Viewerを使い倒す〜配列入手から系統樹作成まで〜","CLC Sequence ViewerはCLC Bio社が提供するフリーの統合解析環境で、マルチプルアラインメントの作成・編集、系統樹作成、様々なフォーマットに応じた出力機能など多機能を備えています。また、Windows, MacOSX, UNIXとマルチプラットフォームで動作します。配列比較に使用したデータはヘム生合成に関与する鉄挿入酵素Ferrochelataseです。比較対照はヒト・マウス・ニワトリの真核生物グループと大腸菌・枯草菌・シアノバクテリアの真性細菌グループの計6生物種です。今回はCLC Sequence Viewerを用いて配列入手からマルチプルアラインメントの作成から系統樹の描写・画像出力までを紹介します。 インターネット接続をプロキシを介して行っている場合、別途このCLC Sequence Viewer上においてもその設定を行う必要があるので注意してください。CLC Sequence Viewerを起動し、「Edit」→「Preferences」→「Advanced」とたどっていくと、プロキシ設定の画面になるので、ここにプロキシの情報を記入します。CLC Sequence Viewerを再起動すれば設定したプロキシが有効になります。","環境設定,アミノ酸,配列解析,可視化,ソフトウェア,アラインメント","http://youtu.be/W8vq6-t9lOI","http://togotv.dbcls.jp/movie/100405sv02.mov","http://doi.org/10.7875/togotv.2010.031","http://togotv.dbcls.jp/images/20100405_0.jpg","100405sv02.mov","thumbnail/20100405_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"292","","togotv.2010.030","","20100403","日本農芸化学会2010年度大会ランチョンセミナー 「生命科学系データベースアーカイブ」","本日は2010年3月29日に行われた日本農・/a>2010年度大会ランチョンセミナー「情報整理術2010 〜文献とデータを賢く管理する〜」からライフサイエンス統合データベースセンター畠中 秀樹 特任准教授による「生命科学系データベースアーカイブ」をお送りします。統合データベースプロジェクトで取り組んでいるデータアーカイブサービスの概要と、アーカイブデータの使い方、お手持ちのデータをアーカイブする方法について紹介しています。","DBCLS,講演","http://youtu.be/YgMRs3p72JU","http://togotv.dbcls.jp/movie/100403gei_hh.mov","http://doi.org/10.7875/togotv.2010.030","http://togotv.dbcls.jp/images/20100403_0.jpg","100403gei_hh.mov","thumbnail/20100403_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"291","","togotv.2010.029","","20100402","日本農芸化学会2010年度大会ランチョンセミナー 「文献執筆支援ツールの紹介」","本日は2010年3月29日に行われた日本農・/a>2010年度大会ランチョンセミナー「情報整理術2010 〜文献とデータを賢く管理する〜」からライフサイエンス統合データベースセンター山本 泰智 特任研究員による「文献執筆支援ツールの紹介」をお送りします。統合データベースプロジェクトで提供している文献執筆支援サービス、略語とその展開形を検索可能なAllie、英語論文中に頻出する英語表現を検索するinMeXes、文献のPDFを効率よく整理するTogoDoc/TogoDocClientが紹介されています。","DBCLS,講演,辞書,文献検索,文章執筆","http://youtu.be/Lc-i4fK8YEo","http://togotv.dbcls.jp/movie/100402gei_yy.mov","http://doi.org/10.7875/togotv.2010.029","http://togotv.dbcls.jp/images/20100402_0.jpg","100402gei_yy.mov","thumbnail/20100402_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"290","","togotv.2010.028","","20100401","日本農芸化学会2010年度大会ランチョンセミナー 「情報整理術2010」〜文献とデータを賢く管理する〜","本日は2010年3月29日に行われた日本農・/a>2010年度大会ランチョンセミナー「情報整理術2010 〜文献とデータを賢く管理する〜」からライフサイエンス統合データベースセンター川本 祥子 特任准教授による統合データベースプロジェクトの紹介をお送りします。情報爆発時代に突入して明らかになってきた生命科学系データベースの問題点や、それらの解決に向けた統合データベースプロジェクトの取り組みが紹介されています。","DBCLS,講演","http://youtu.be/qXJz0JstTb0","http://togotv.dbcls.jp/movie/100401gei_sk.mov","http://doi.org/10.7875/togotv.2010.028","http://togotv.dbcls.jp/images/20100401_0.jpg","100401gei_sk.mov","thumbnail/20100401_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"289","","togotv.2010.027","","20100331","Ensembl Tips 〜Ensembl Archivesを使い倒す〜 2010","Ensemblは、 The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。 今回は、Ensemblの古いバージョン(Ensembl Archives)を閲覧する方法について紹介しています。Ensembl のバージョンとゲノム配列のバージョンの違いは混同しやすいですが、ゲノム配列を使ったデータベースやアノテーションはどのバージョンのゲノム配列に対応しているかが非常に重要です。","ゲノム,Ensembl","http://youtu.be/IcvFtCn821c","http://togotv.dbcls.jp/movie/100331ensemblarchives.mov","http://doi.org/10.7875/togotv.2010.027","http://togotv.dbcls.jp/images/20100331_0.jpg","100331ensemblarchives.mov","thumbnail/20100331_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"288","","togotv.2010.026","","20100329","BioMartを使い倒す 比較ゲノミクス編","BioMartは、the Ontario Institute for Cancer Research (OiCR) と the European Bioinformatics Institute (EBI) が共同で開発しているクエリ指向型データ管理システムです。これを使うといろいろなことができますが、今回は二つの生物種の対応するデータを取得する方法を解説します。","ゲノム,塩基配列","http://youtu.be/-njwBUZ3IkA","http://togotv.dbcls.jp/movie/100329biomart.mov","http://doi.org/10.7875/togotv.2010.026","http://togotv.dbcls.jp/images/20100329_0.jpg","100329biomart.mov","thumbnail/20100329_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"287","","togotv.2010.025","","20100326","遺伝子発現バンク(GEO)目次を使い倒す 2010","NCBI GEO(Gene Expression Omnibus)は、遺伝子発現バンクとして、主にマイクロアレイデータの受け皿となっています。様々な種類の遺伝子発現データを受け入れるため、そのデータ単位がデータセット(研究・目的ごとにまとめられた発現データの集合 (発現データマトリクス))、サンプル(測定に附された生体試料)、プラットフォーム(発現定量のための測定プロトコル)の3種類あることや、実験手法の多様さによって全体のデータの傾向を掴みづらいのも事実です。そこで、この NCBI GEO を快適に使い、データの全容を俯瞰するための仕組み「遺伝子発現バンク(GEO)目次」、通称「GEO目次」が国立遺伝学研究所の大久保公策教授らによって開発され、現在DBCLSによって維持されています。今回はその使い方の概略を紹介します。数多く登録されている遺伝子発現データの大まかな傾向をつかむのに役に立つことでしょう。","DBCLS,可視化,発現解析,データベース,GEO","http://youtu.be/Tw4H91KQQJ0","http://togotv.dbcls.jp/movie/100326GEOindex-1.mov","http://doi.org/10.7875/togotv.2010.025","http://togotv.dbcls.jp/images/20100326_0.jpg","100326GEOindex-1.mov","thumbnail/20100326_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"286","","togotv.2010.024","","20100323","統合TVをiTunesで見る 2010","統合TVの番組はビデオキャスト (videocast)
としてiTunesで見ることができます。iTunesで統合TVを見られることの利点は一度番組をダウンロードしておけば、ネットワーク環境にいないときでもいつでも繰り返し見られることです。またお手持ちのiPodやiPhoneで番組を見ながらパソコンの操作を同時に行えます。
今回の番組では、iTunesで統合TVを見るための方法および設定の仕方について説明しています。","DBCLS,環境設定","http://youtu.be/GZ3Si8qO4AQ","http://togotv.dbcls.jp/movie/100323itunes.mov","http://doi.org/10.7875/togotv.2010.024","http://togotv.dbcls.jp/images/20100323_0.jpg","100323itunes.mov","thumbnail/20100323_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"285","","togotv.2010.023","","20100315","Ensembl tips 配列の比較をする 2010","Ensemblは、 The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。以前、統合TVの番組でもEnsemblゲノムブラウザを使って遺伝子を眺める などを紹介してきましたが、その利便性の高さの一部しかお伝えできていません。そこで数あるEnsemblの便利機能を皆さんに知ってもらうために、""Ensembl tips""というかたちでシリーズ化して今後放送していく予定です。今回は、その第一弾として多くの人が直面するであろう「配列の比較」に焦点を当てています。Ensemblでは、ヒトやマウスなど生物種間での配列のアラインメント表示はもちろんのこと、系統樹の表示やなどが可能です。それらの使い方を紹介しています。","ゲノム,遺伝子,塩基配列,配列解析,Ensembl,アラインメント","http://youtu.be/dMoULhnJ-dY","http://togotv.dbcls.jp/movie/100315Ensembl.mov","http://doi.org/10.7875/togotv.2010.023","http://togotv.dbcls.jp/images/20100315_0.jpg","100315Ensembl.mov","thumbnail/20100315_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"284","","togotv.2010.022","","20100305","OReFiLを使い倒す 2010","DBCLSが統合ホームページで提供するサービスの一つとしてOReFiLがあります。OReFiLは、(an Online Resource Finder for Lifesciences, 「オレフィル」と読みます)は、ライフサイエンス分野のパブリッシュされた文献に記載されているウェブリソース(データベースやツールなど)を検索します。近年の分子生物学の発展によって大量のデータが生産され、それに付随する形でデータベースやツールなどが数多く作成されており、インターネットを通じて提供されています。多くのリソースが提供されている状態は選択肢が多いという点では歓迎すべきことですが、逆に情報が氾濫し「何を使えばよいのかわからない」、「リソースがどこにあるのかわからない」、「そもそもリソースがあるかどうかもわからない」という事態を招いてしまっています。Googleなどの検索エンジンは、ウェブ上のあらゆる情報を収集しているため、ノイズとなる情報も多く、必ずしも目的のリソースにアクセスすることが難しいのが現状です。そこで、OReFiLではMEDLINEのアブストラクトやオープンアクセスの文献などの査読を経た情報からウェブ上のリソースを収集して、検索できる仕組みを提供しています。収集したテキストの情報を解析しているため、検索の際に問い合わせに対して適切な結果を返してくれます。そのため、容易に目的のリソースにアクセスすることができます。","DBCLS,文献検索","http://youtu.be/KEiRTVjYbUY","http://togotv.dbcls.jp/movie/100305OReFiL.mov","http://doi.org/10.7875/togotv.2010.022","http://togotv.dbcls.jp/images/20100305_0.jpg","100305OReFiL.mov","thumbnail/20100305_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"283","","togotv.2010.021","","20100304","Jalviewを使い倒す〜配列解析・系統樹編〜","Jalviewは多重アラインメントのビューワー/エディターです。Javaで作られており、Web上で動作するプラットフォームもあります。今回は、PCにインストールしたJalviewを使用して、多重アラインメントの結果から系統樹を作成し、また多重アライメントされた配列を削除・追加します。Jalviewのインストールは、Jalviewの「Download」から、「Install with InstallAnywhere」をクリックします。そして、自分のOSに合ったインストーラ(本動画の場合MacOSX)をダウンロードします。 今回使用するデータは「ClustalWで解析した結果をTreeView Xで描写する」の中で行っているClustalwの解析結果です。また、追加する配列はUniProt ID:Q6EV72です。","可視化,配列解析,系統樹,ウェブツール,アラインメント","http://youtu.be/NIfWt6bHovk","http://togotv.dbcls.jp/movie/100304jalview.mov","http://doi.org/10.7875/togotv.2010.021","http://togotv.dbcls.jp/images/20100304_0.jpg","100304jalview.mov","thumbnail/20100304_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"282","","togotv.2010.020","","20100303","PubMedの使い方〜発展編〜","PubMedは医学・看護学・歯学・獣医学・ヘルスケア・臨床科学の分野における、雑誌・引用・要約などを数百万件に渡り検索できるデータベースです。従来の MEDLINE と基本的には同じデータベースです。 PubMedは米国立医学図書館(National Library of Medicine)が維持・管理しており、1997年よりインターネットでの無料公開が始まりました。また、PubMedは関連するWebサイトや他のNCBI分子生物学リソースへのリンクへのアクセスを提供しています。今回の統合TVでは、PubMedを使った文献検索の発展編として、Single Citation Matcher、Clinical Queries、MeSH DatabaseおよびJournals Databaseといったある検索条件に特化した絞り込み検索の方法についてご紹介します。","文献検索,NCBI","http://youtu.be/Cb0hrMAauCk","http://togotv.dbcls.jp/movie/100303pubmed2.mov","http://doi.org/10.7875/togotv.2010.020","http://togotv.dbcls.jp/images/20100303_0.jpg","100303pubmed2.mov","thumbnail/20100303_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"281","","togotv.2010.019","","20100302","CLC Sequence Viewerを使い倒す〜導入から基本操作まで〜","CLC Sequence ViewerはCLC Bio社が提供するフリーの統合解析環境で、マルチプルアラインメントの作成・編集、系統樹作成、様々なフォーマットに応じた出力機能など多機能を備えています。また、Windows, MacOSX, UNIXとマルチプラットフォームで動作します。 今回は導入編として、CLC Sequence Viewerのインストールおよび配列情報の管理方法について紹介します。 インターネット接続をプロキシを介して行っている場合、別途このCLC Sequence Viewer上においてもその設定を行う必要があるので注意してください。CLC Sequence Viewerを起動し、「Edit」→「Preferences」→「Advanced」とたどっていくと、プロキシ設定の画面になるので、ここにプロキシの情報を記入します。CLC Sequence Viewerを再起動すれば設定したプロキシが有効になります。","アミノ酸,塩基配列,ソフトウェア,アラインメント","http://youtu.be/GZfqrBUjNfQ","http://togotv.dbcls.jp/movie/100302sv01.mov","http://doi.org/10.7875/togotv.2010.019","http://togotv.dbcls.jp/images/20100302_0.jpg","100302sv01.mov","thumbnail/20100302_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"280","","togotv.2010.018","","20100227","PubMedの使い方〜基本編〜","PubMedは医学・看護学・歯学・獣医学・ヘルスケア・臨床科学の分野における、雑誌・引用・要約などを数百万件に渡り検索できるデータベースです。従来の MEDLINE と基本的には同じデータベースです。 PubMedは米国立医学図書館(National Library of Medicine)が維持・管理しており、1997年よりインターネットでの無料公開が始まりました。また、PubMedは関連するWebサイトや他のNCBI分子生物学リソースへのリンクへのアクセスを提供しています。今回の統合TVでは、PubMedを使った文献検索の基本とかゆいところに手が届く検索設定の方法についてご紹介します。","文献検索,NCBI","http://youtu.be/alIf3I5KQck","http://togotv.dbcls.jp/movie/100227pubmed1.mov","http://doi.org/10.7875/togotv.2010.018","http://togotv.dbcls.jp/images/20100227_0.jpg","100227pubmed1.mov","thumbnail/20100227_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"279","","togotv.2010.017","","20100226","EMBOSS restrict,remapを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、restrictについて紹介しています。restrictを使うと、塩基配列中の制限酵素切断部位を検索することができます。remapを使うと、配列の制限酵素切断部位や翻訳配列などを表示することができます。","EMBOSS,塩基配列,配列解析,アミノ酸","http://youtu.be/r5Umk9AQ-W0","http://togotv.dbcls.jp/movie/100226restrict.mov","http://doi.org/10.7875/togotv.2010.017","http://togotv.dbcls.jp/images/20100226_0.jpg","100226restrict.mov","thumbnail/20100226_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"278","","togotv.2010.016","","20100225","統合DBを使い倒すためにOpenIDを取得する2010","OpenIDは、一つのIDで対応するWebサービスに認証ができる仕組みです。OpenID 対応サービスを利用する場合には、各サービス毎にアカウントやユーザ情報を管理する必要がなくなります。統合DBセンターでは今後さまざまなサービスを提供していく予定ですが、それらのサービスは一つのOpenIDを取得すればすべて利用できます。また、センターのサービスに限らず、OpenIDに対応しているサイトであれば、すべてのサービスを一つのIDで利用でき、サイト毎にユーザ名やパスワードを変える必要がなくなり大変便利です。今回は統合DBからOpenIDを取得する方法と、取得したIDを使ってサービスにログインする方法について紹介します。","DBCLS","http://youtu.be/bY3zi0Yb1bQ","http://togotv.dbcls.jp/movie/100225OpenID.mov","http://doi.org/10.7875/togotv.2010.016","http://togotv.dbcls.jp/images/20100225_0.jpg","100225OpenID.mov","thumbnail/20100225_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"277","","togotv.2010.015","","20100218","クリエイティブ・コモンズ・ライセンスの付け方","Creative Commons (CC)は、創造的な作品に柔軟な著作権を定義するライセンスシステムを提供するNPO法人です。クリエイティブ・コモンズ・ライセンスは、文書、動画、音楽、写真など多様な「作品」を対象としています。 なぜそのようなライセンスが必要なのかというと、情報を共有しようとするとき、知的所有権法や著作権法が障害になる場合があります。CCはこれらの法的問題を解決し、広く情報を利用できるように設けられたライセンスです。CCを使って「作品」を公開することは、著作権者側にも利用者側にもメリットがあります。さあ、あなたもクリエイティブ・コモンズ・ライセンスを使いこなして、研究活動の成果を再利用しやすくしてみませんか!","環境設定,クリエイティブ・コモンズ","http://youtu.be/WHo-sPBo_hM","http://togotv.dbcls.jp/movie/100218cc.mov","http://doi.org/10.7875/togotv.2010.015","http://togotv.dbcls.jp/images/20100218_0.jpg","100218cc.mov","thumbnail/20100218_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"276","","togotv.2010.014","","20100217","How to use inMeXes","This tutorial will describe how to use inMeXes, a system that rapidly searches for English expressions in PubMed/MEDLINE. “inMeXes” is developed and maintained by the Database Center for Life Science (DBCLS). ""inMeXes"" incrementally searches expressions of multiple words appearing not less than 10 times in PubMed/MEDLINE titles and abstracts.The search results display candidate expressions together with the number of appearance among PubMed/MEDLINE indexed publications. Using inMeXes, users can for example, search for candidate prepositions that follow a certain verb or usage of a certain word in English.","DBCLS,English,文章執筆","http://youtu.be/XEO2zfSTIS8","http://togotv.dbcls.jp/movie/100217inmexes_en.mov","http://doi.org/10.7875/togotv.2010.014","http://togotv.dbcls.jp/images/20100217_0.jpg","100217inmexes_en.mov","thumbnail/20100217_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"275","","togotv.2010.013","","20100216","KazusaMartを使い倒す〜オーソログ一覧を作成する〜","KazusaMartはかずさDNA研究所が提供するBioMartシステムによるゲノム情報統合型データベースの一つで、シアノバクテリアのゲノム情報に特化していることが特徴です。今回は、KazusaMartを用いてシアノバクテリア Anabaena sp. PCC7120の光合成に関連する遺伝子のオーソログ一覧の作成方法を紹介します。","塩基配列,遺伝子,オーソログ,データベース","http://youtu.be/BD3RX4w90nA","http://togotv.dbcls.jp/movie/100216kazusamart02.mov","http://doi.org/10.7875/togotv.2010.013","http://togotv.dbcls.jp/images/20100216_0.jpg","100216kazusamart02.mov","thumbnail/20100216_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"274","","togotv.2010.012","","20100204","KazusaMartを使い倒す〜塩基配列を入手する〜","KazusaMartはかずさDNA研究所が提供するBioMartシステムによるゲノム情報統合型データベースの一つで、シアノバクテリアのゲノム情報に特化していることが特徴です。今回は、KazusaMartを用いてシアノバクテリア Synechocystis sp. PCC6803の光合成に関連する遺伝子の塩基配列の入手する方法を紹介します。","塩基配列,遺伝子,データベース","http://youtu.be/hyIDqEiCQeQ","http://togotv.dbcls.jp/movie/100204kazusamart.mov","http://doi.org/10.7875/togotv.2010.012","http://togotv.dbcls.jp/images/20100204_0.jpg","100204kazusamart.mov","thumbnail/20100204_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"273","","togotv.2010.011","","20100203","統合TVの作り方 in Camtasia Studio 6 〜編集編","今回の番組では、統合TVがどのようにして作られているかを紹介します。今回は、Camtasia Studio (カムタジア スタジオ) 6を用いた制作場面における動画の撮影編に続いて、動画の編集編をお送りします。さあ、あなたも統合TVを作ってみませんか?!","DBCLS","http://youtu.be/ktUHoyzK8uU","http://togotv.dbcls.jp/movie/100203editCam.mov","http://doi.org/10.7875/togotv.2010.011","http://togotv.dbcls.jp/images/20100203_0.jpg","100203editCam.mov","thumbnail/20100203_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"272","","togotv.2010.010","","20100130","How to use DNA database overview and search","DNA database overview and search is one of the services developed and maintained by the Database Center for Life Science (DBCLS) in Japan. It is available from the LSDB home page. “DNA database overview and search” is developed and maintained as part of the “Integrated Database Project”, funded by the Japanese Ministry of Education, Culture, Sports, Science and Technology. It is a rapid search system that retrieves records maintained by the International Nucleotide Sequence Databases (INSD) and displays and organizes the results by taxonomy (species type), and project type (molecule type). For example, using “DNA database overview and search”, users can download nucleotide sequences of a particular species, submitted by a particular research institution in one click. In addition, a BLAST search, direct links to publications and patents, and histograms that show changes in the number of nucleotide submission are available. ","DBCLS,English","http://youtu.be/LKcF7BSut7M","http://togotv.dbcls.jp/movie/100130overview_en.mov","http://doi.org/10.7875/togotv.2010.010","http://togotv.dbcls.jp/images/20100130_0.jpg","100130overview_en.mov","thumbnail/20100130_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"271","","togotv.2010.009","","20100129","統合TVの作り方 in Camtasia Studio 6 〜撮影編","今回の番組では、統合TVがどのようにして作られているかを紹介します。今回は、Camtasia Studio (カムタジア スタジオ) 6を用いた制作場面のうち、動画の撮影編をお送りします。つづく動画の編集編はこちらです。さあ、あなたも統合TVを作ってみませんか?!","DBCLS","http://youtu.be/12nTunygdGk","http://togotv.dbcls.jp/movie/100129howCam.mov","http://doi.org/10.7875/togotv.2010.009","http://togotv.dbcls.jp/images/20100129_0.jpg","100129howCam.mov","thumbnail/20100129_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"270","","togotv.2010.008","","20100128","ClustalWで解析した結果をTreeView Xで描写する","ClustalWは複数のDNA配列やアミノ酸配列に対してマルチプルアライメントを行うツールです。EMBL-EBIの他にDDBJやKEGGでも同様のサービスが提供されています。また、TreeView Xはデンドログラムや系統樹などを描写するフリーソフトで、WindowsやUNIXでも利用できるマルチプラットフォームのソフトウェアです。 今回使用するデータは「BLAST検索でヒットしたエントリ群のmulti fastaファイルを取得する 」で取得された上位20件のアミノ酸配列を使用し、ClustalWで解析されたデンドログラムの情報を使って系統樹を描写しています。 今回はClustalwとTreeView Xを使用していますが、そのほかにも動画内で紹介しているJalViewでも同じようなことができます。","配列解析,系統樹,遺伝子,アミノ酸,タンパク質","http://youtu.be/r2cG1SzDdBA","http://togotv.dbcls.jp/movie/100128clustalw.mov","http://doi.org/10.7875/togotv.2010.008","http://togotv.dbcls.jp/images/20100128_0.jpg","100128clustalw.mov","thumbnail/20100128_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"269","","togotv.2010.007","","20100127","生命科学分野のデータベースを統合する仕事:落ちこぼれ大学生が.DB(Doctor of the database)にいたるまで","本日の統合TVは、2010年1月8日に行われた、東北大学グローバルCOE 脳神経科学を社会へ還流する教育研究拠点 第10回脳科学GCOEキャリアパスセミナーから、ライフサイエンス統合データベースセンター 特任准教授 坊農秀雅による「生命科学分野のデータベースを統合する仕事:落ちこぼれ大学生が.DB(Doctor of the database)にいたるまで」をお送りします。","講演,DBCLS","http://youtu.be/3iVikexChPA","http://togotv.dbcls.jp/movie/100127tohoku_bono.mov","http://doi.org/10.7875/togotv.2010.007","http://togotv.dbcls.jp/images/20100127_0.jpg","100127tohoku_bono.mov","thumbnail/20100127_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"268","","togotv.2010.006","","20100121","How to use Taxonomy icon in LSDB","Taxonomy icon is one of the services developed and maintained by the Database Center for Life Science (DBCLS) in Japan. It is available from the LSDB home page. Taxonomy icon contains icons (or images) and information of species that are familiar to people working in the Life Sciences. The icons and related information are organized by taxonomy. The icons are available under a Creative Commons license (Attribution 2.1 Japan). New icons will be uploaded regularly and will be available for use.","DBCLS,English","http://youtu.be/fxHcxdzsbjU","http://togotv.dbcls.jp/movie/100121taxonomy_en.mov","http://doi.org/10.7875/togotv.2010.006","http://togotv.dbcls.jp/images/20100121_0.jpg","100121taxonomy_en.mov","thumbnail/20100121_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"267","","togotv.2010.005","","20100120","How to use TogoWS REST service","TogoWSREST service is one of the services provided by the Database Center for Life Science (DBCLS). TogoWS enables users to access and utilize major biological databases (such as those maintained by NCBI, EBI, DDBJ, KEGG, PDBj and CBRC) without any additional software to create interoperable workflows. While the APIs of major biological database have different query mechanisms and syntax, we have integrated them so that the user can query and retrieve data in a unified manner. We hope that TogoWS will reduce the necessity to learn new programming languages and provide a user friendly environment for creating workflows. The tutorial is a guide on how to use the REST service. In the REST service, users only need to specify the database names and entries (IDs) in a URL to retrieve information from a database. The REST service also allows users to retrieve a particular field of an entry from the database.","DBCLS,English","http://youtu.be/VAyMXNO8W4o","http://togotv.dbcls.jp/movie/100120REST_eng.mov","http://doi.org/10.7875/togotv.2010.005","http://togotv.dbcls.jp/images/20100120_0.jpg","100120REST_eng.mov","thumbnail/20100120_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"266","","togotv.2010.004","","20100114","How to use OReFiL","OReFiL (Online Resource Finder for Lifesciences) is one of the services developed and maintained by the Database Center for Life Science (DBCLS). It facilitates a search for online resources (databases and tools) that are introduced in peer-reviewed papers. The advancement of molecular biology has generated large amounts of data and produced databases and tools that can be accessed via the Internet. While the abundance of resources and information on these resources is a good thing on the one hand, it creates a difficult situation for the users. For example, users have difficulty finding or accessing resources that fulfill their needs and users do not know if the resource even exists or is available via the Internet. Using popular search engines to overcome this situation, is one solution, but this is often very inefficient and time consuming, because popular search engines index various types of web pages, most of which may not be relevant at all. We have developed OReFiL as a better way to solve this problem. It is a search system that extracts all of the URLs from MEDLINE abstracts and PubMed-indexed BioMed Central full-papers (implementation or availability sections), and indexes them with MeSH terms and author names. Since OReFiL carries out a full-text search amongst peer-reviewed papers, the search results are more relevant to the user’s inquiry and as a result provide an easy access to resources the user is looking for. ","DBCLS,English","http://youtu.be/CdXLYOOJyu4","http://togotv.dbcls.jp/movie/100114orefil_en.mov","http://doi.org/10.7875/togotv.2010.004","http://togotv.dbcls.jp/images/20100114_0.jpg","100114orefil_en.mov","thumbnail/20100114_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"265","","togotv.2010.003","","20100107","How to use database catalog in LSDB","Database catalog in LSDB is one of the services provided by the Database Center for Life Science (DBCLS). It is a database of databases.There are so many databases in the world, while there are so many users who complain about “databases”. They say “I cannot find appropriate databases for my project!”, “ I cannot really see what kinds of databases are available!” and so on. It is not too much to say that how to make use of databases is a key issue for your research projects. Database catalog organizes the database records by database type, data type, subjects of the study and database provider. And users can post comments on any database.","DBCLS,English","http://youtu.be/6iq-cRC_iEI","http://togotv.dbcls.jp/movie/100107catalogue_eng.mov","http://doi.org/10.7875/togotv.2010.003","http://togotv.dbcls.jp/images/20100107_0.jpg","100107catalogue_eng.mov","thumbnail/20100107_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"264","","togotv.2010.002","","20100104","MacOSXをUNIXとして使い倒す・その壱","今回の統合TVでは、MacOSXをUNIXとして利用する方法を紹介します。分子生物学の研究において有益なツールには、当センターのライフサイエンス統合データベースでご紹介している通り、Webベースで利用出来るものもありますが、ローカル、つまり自分のコンピュータにインストールしなければ利用出来ないものもあります。その際、ただダウンロードしてインストールするだけで良いもの、つまりバイナリとして配布されているものではなく、ソースコードを自分でコンパイルすることでしか利用出来ないものを使ってみたい、でもUNIXはちょっとよく分からない…という方に向けて、この第1回目ではUNIXの基本的なコマンドやコンパイルの方法について、EMBOSSを例にして説明しています。","EMBOSS,プログラミング,環境設定,UNIX","http://youtu.be/6hhyiQ4rvX4","http://togotv.dbcls.jp/movie/100104MacOSXasUNIX1.mov","http://doi.org/10.7875/togotv.2010.002","http://togotv.dbcls.jp/images/20100104_0.jpg","100104MacOSXasUNIX1.mov","thumbnail/20100104_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"263","","togotv.2010.001","","20100101","分子生物学会フォーラム〜ライフサイエンス統合データベースセンターでの取り組み〜","2010年最初の統合TVは 第32回日本分子生物学会年会 2日目に開催されたフォーラム「デジタル時代のジレンマ”共有と秘匿のバランス”」から、ライフサイエンス統合データベースセンター センター長 高木利久 による「ライフサイエンス統合データベースセンターでの取り組み」をお送りします。ライフサイエンス統合データベースプロジェクトの目指すもの、またデータ共有・統合化にまつわる問題と、その解決に向けた統合データベースセンターの取り組みや役割について紹介されています。約5分です。","講演,DBCLS","http://youtu.be/t7GV5H1-zZ4","http://togotv.dbcls.jp/movie/100101MBSJ2009_tt.mov","http://doi.org/10.7875/togotv.2010.001","http://togotv.dbcls.jp/images/20100101_0.jpg","100101MBSJ2009_tt.mov","thumbnail/20100101_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"262","","togotv.2009.124","","20091231","分子生物学会フォーラム〜賢く著作物を共有する方法(クリエイティブコモンズの使い方)〜","本日の統合TVは 第32回日本分子生物学会年会 2日目に開催されたフォーラム「デジタル時代のジレンマ”共有と秘匿のバランス”」から、NPO法人クリエイティブ・コモンズ・ジャパン/国立情報学研究所野口祐子 弁護士による「賢く著作物を共有する方法(クリエイティブコモンズの使い方)」をお送りします。","講演,クリエイティブ・コモンズ","http://youtu.be/e9E1RkMjMo8","http://togotv.dbcls.jp/movie/091231MBSJ2009_yuko.mov","http://doi.org/10.7875/togotv.2009.124","http://togotv.dbcls.jp/images/20091231_0.jpg","091231MBSJ2009_yuko.mov","thumbnail/20091231_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"261","","togotv.2009.123","","20091230","分子生物学会フォーラム〜医学研究におけるプライヴァシーデータの共有を進めるために〜","本日の統合TVは 第32回日本分子生物学会年会 2日目に開催されたフォーラム「デジタル時代のジレンマ”共有と秘匿のバランス”」から、神戸学院大学法学部佐藤雄一郎 准教授 による「医学研究におけるプライヴァシーデータの共有を進めるために」をお送りします。","講演","http://youtu.be/u86mQrrvqlQ","http://togotv.dbcls.jp/movie/091230MBSJ2009_ys.mov","http://doi.org/10.7875/togotv.2009.123","http://togotv.dbcls.jp/images/20091230_0.jpg","091230MBSJ2009_ys.mov","thumbnail/20091230_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"260","","togotv.2009.122","","20091229","分子生物学会フォーラム〜データ秘匿は知財立国を助けるのか? 〜","本日の統合TVは 第32回日本分子生物学会年会 2日目に開催されたフォーラム「デジタル時代のジレンマ”共有と秘匿のバランス”」から、末吉総合法律事務所(現 潮見坂綜合法律事務所) 末吉亙 弁護士 による「データ秘匿は知財立国を助けるのか?」をお送りします。","講演","http://youtu.be/-okDBjXob4E","http://togotv.dbcls.jp/movie/091229MBSJ2009_ws.mov","http://doi.org/10.7875/togotv.2009.122","http://togotv.dbcls.jp/images/20091229_0.jpg","091229MBSJ2009_ws.mov","thumbnail/20091229_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"259","","togotv.2009.121","","20091228","分子生物学会フォーラム〜なぜ今共有なのか?個人プレーから社会プレーへ〜","本日の統合TVは 第32回日本分子生物学会年会 2日目に開催されたフォーラム「デジタル時代のジレンマ”共有と秘匿のバランス”」から、国立遺伝学研究所生命情報・DDBJ研究センター センター長 大久保公策 による「なぜ今共有なのか?個人プレーから社会プレーへ」をお送りします。フォーラムの趣旨説明、時代に合わせてどのように制度を変えていくべきかについての問題提起をされています。約9分です。","講演","http://youtu.be/jP6rxm8hX3c","http://togotv.dbcls.jp/movie/091228MBSJ2009_ko.mov","http://doi.org/10.7875/togotv.2009.121","http://togotv.dbcls.jp/images/20091228_0.jpg","091228MBSJ2009_ko.mov","thumbnail/20091228_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"258","","togotv.2009.120","","20091227","分子生物学会ワークショップ〜実験生物学者にとって有益な情報環境を提案する機会:統合データベースプロジェクトのユーザ評価〜","本日の統合TVは 第32回日本分子生物学会年会 2日目に開催されたワークショップ「ウエット研究者が情報技術的に自立するために:統合データベースプロジェクトからの提案」から、ライフサイエンス統合データベースセンター 高祖歩美 による「実験生物学者にとって有益な情報環境を提案する機会:統合データベースプロジェクトのユーザ評価」をお送りします。ライフサイエンス統合データベースセンターの広報が行っている活動や、毎年実施している統合データベースプロジェクトのユーザ評価について、その実施方法と結果、結果を受けてのサービス改善の具体例、課題について紹介されています。約15分です。","講演,DBCLS","http://youtu.be/T-cHpWf2gWM","http://togotv.dbcls.jp/movie/091227MBSJ2009_koso.mov","http://doi.org/10.7875/togotv.2009.120","http://togotv.dbcls.jp/images/20091227_0.jpg","091227MBSJ2009_koso.mov","thumbnail/20091227_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"257","","togotv.2009.119","","20091226","分子生物学会ワークショップ〜TogoDBを用いたシダESTデータベースAcESTの構築〜","本日の統合TVは 第32回日本分子生物学会年会 2日目に開催されたワークショップ「ウエット研究者が情報技術的に自立するために:統合データベースプロジェクトからの提案」から、首都大学東京大学院理工学研究科生命科学専攻 鐘ヶ江健 先生による「TogoDBを用いたシダESTデータベースAcESTの構築」をお送りします。ライフサイエンス統合データベースプロジェクトで提供している、誰でも簡単にデータベースを構築できるサービス「TogoDB」を使って、シダESTのデータベースを構築した実例をお話いただきました。TogoDBを使ったデータベース構築の手順や、実際に構築したデータベース「AcEST」の機能について紹介されています。約14分です。","講演,配列解析","http://youtu.be/2Vo42FV-8wc","http://togotv.dbcls.jp/movie/091226MBSJ2009_kanegae.mov","http://doi.org/10.7875/togotv.2009.119","http://togotv.dbcls.jp/images/20091226_0.jpg","091226MBSJ2009_kanegae.mov","thumbnail/20091226_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"256","","togotv.2009.118","","20091223","分子生物学会ワークショップ〜ブタ成熟脂肪細胞および顆粒層細胞における脱分化ならびに多能性獲得機構の統合トランスクリプトミクス〜","本日の統合TVは 第32回日本分子生物学会年会 2日目に開催されたワークショップ「ウエット研究者が情報技術的に自立するために:統合データベースプロジェクトからの提案」から、日本大学大学院生物資源科学研究科 小野浩雅 による「ブタ成熟脂肪細胞および顆粒層細胞における脱分化ならびに多能性獲得機構の統合トランスクリプトミクス」をお送りします。ウエット研究者が情報技術を駆使して実験結果を解析した実例が紹介されています。また、解析に使われたツールについての紹介や、データを使う側/提供する側双方に必要な心構えについて、ご自身の経験を基にお話いただきました。約16分です。","講演,発現解析","http://youtu.be/XGwbGnlpAyM","http://togotv.dbcls.jp/movie/091223MBSJ2009_hono.mov","http://doi.org/10.7875/togotv.2009.118","http://togotv.dbcls.jp/images/20091223_0.jpg","091223MBSJ2009_hono.mov","thumbnail/20091223_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"255","","togotv.2009.117","","20091222","分子生物学会ワークショップ〜かずさアノテーションを用いた分散型ゲノムアノテーションの実証実験〜","本日の統合TVは 第32回日本分子生物学会年会 2日目に開催されたワークショップ「ウエット研究者が情報技術的に自立するために:統合データベースプロジェクトからの提案」から、ライフサイエンス統合データベースセンター/かずさDNA研究所岡本忍 による「かずさアノテーションを用いた分散型ゲノムアノテーションの実証実験」をお送りします。集合知を利用した分散型アノテーションの試み、特に遺伝子と文献情報を関連付ける Gene Indexing について、実際のアノテーションにかかった時間やコスト、得られた成果について紹介されています。また、Gene Indexing で得られた成果の応用例として、Cytoscape を使ったネットワークの表示や抽出、genoDive Pro/Eu を使ってゲノム上でアノテーション情報を俯瞰する例が紹介されています。約14分です。","講演,ゲノム,遺伝子,可視化,文献検索","http://youtu.be/lZlCSbpVcZA","http://togotv.dbcls.jp/movie/091222MBSJ2009_so.mov","http://doi.org/10.7875/togotv.2009.117","http://togotv.dbcls.jp/images/20091222_0.jpg","091222MBSJ2009_so.mov","thumbnail/20091222_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"254","","togotv.2009.116","","20091221","分子生物学会ワークショップ 統合データベースプロジェクト:オープンで知のめぐりの良い分子生物学を目指して","本日の統合TVは 第32回日本分子生物学会年会 2日目に開催されたワークショップ「ウエット研究者が情報技術的に自立するために:統合データベースプロジェクトからの提案」から、ライフサイエンス統合データベースセンター坊農秀雅 による「統合データベースプロジェクト:オープンで知のめぐりの良い分子生物学を目指して」をお送りします。ライフサイエンス統合データベースプロジェクトが目指すもの、また現在鋭意開発中の次世代シーケンサーを使った発現情報の統合化システム togoexp について紹介されています。約26分です。","講演,DBCLS,発現解析,NGS","http://youtu.be/TQPXAckYm_o","http://togotv.dbcls.jp/movie/091221MBSJ2009_bono.mov","http://doi.org/10.7875/togotv.2009.116","http://togotv.dbcls.jp/images/20091221_0.jpg","091221MBSJ2009_bono.mov","thumbnail/20091221_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"253","","togotv.2009.115","","20091220","分子生物学会ワークショップ〜はじめに〜","本日の統合TVは 第32回日本分子生物学会年会 2日目に開催されたワークショップ「ウエット研究者が情報技術的に自立するために:統合データベースプロジェクトからの提案」から、国立遺伝学研究所 生命情報・DDBJ研究センター 中村保一 教授によるワークショップ開催の趣旨説明をお送りします。約5分です。","講演","http://youtu.be/VjI74Ly4iL0","http://togotv.dbcls.jp/movie/091220MBSJ2009_yn.mov","http://doi.org/10.7875/togotv.2009.115","http://togotv.dbcls.jp/images/20091220_0.jpg","091220MBSJ2009_yn.mov","thumbnail/20091220_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"252","","togotv.2009.114","","20091219","統計解析ソフト「R」の使い方 〜ヒートマップ編〜","Rは、フリーウェアでオープンソースのデータ解析環境です。Rはデータの操作や計算、可視化のためのソフトが統合されたもので、それらのサンプルデータが豊富に用意されていることやそれらを対話的に実行できることが特徴です。また、Windows, MacOSX, Linux とマルチプラットホームで利用可能です。近年、生命科学分野のためのRパッケージプロジェクトである『BioConductor』が立ち上がり、多くの関連パッケージが配布されており、マイクロアレイデータなどの遺伝子発現プロファイルや質量分析データ、タンパク質相互作用データなどを解析するうえで、欠かせないものとなりつつあります。今回は東京大学大学院農学生命科学研究科の門田幸二さんが自身のHPで公開されている「(Rで)マイクロアレイデータ解析」の中の「作図 ヒートマップ(pseudo-color image) (package: stats; heatmap) 」という項目を例に、Rでヒートマップを作成する手順を紹介しています。この動画では門田さんが作成されたデータやソースコードをそのまま使用していますが、もちろん自分の実験データなども可視化することができます。データの加工や処理の方法も上記のサイトで詳しく解説されているのでぜひ参考にしてみてください。","環境設定,R,Bioconductor,発現解析","http://youtu.be/jgRboSJGK-k","http://togotv.dbcls.jp/movie/091219heatmap.mov","http://doi.org/10.7875/togotv.2009.114","http://togotv.dbcls.jp/images/20091219_0.jpg","091219heatmap.mov","thumbnail/20091219_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"251","","togotv.2009.113","","20091218","EMBOSS showalignを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、showalignについて紹介しています。showalignを使うとマルチプルアラインメントを見やすく装飾して表示することができます。","EMBOSS,塩基配列,配列解析,アミノ酸,可視化,アラインメント","http://youtu.be/rl_nzDD7GCM","http://togotv.dbcls.jp/movie/091218showalign.mov","http://doi.org/10.7875/togotv.2009.113","http://togotv.dbcls.jp/images/20091218_0.jpg","091218showalign.mov","thumbnail/20091218_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"250","","togotv.2009.112","","20091217","UCSC Genome Browserの使い方 〜配列取得編〜","UCSC Genome Browserは、 米国カリフォルニア大学サンタクルーズ校(UCSC)が開発、維持しているゲノムブラウザ、ゲノムアノテーション閲覧システムです。ゲノムブラウザとはアノテーションが付加された遺伝子のゲノム上の位置やその周辺を表示するツールのことです。 今回はUCSC Genome Browserを使い興味のある遺伝子を検索し、その遺伝子の詳細情報とその配列の取得方法について詳しく説明しています。 以下の画像をクリックすると2013年作成の最新版が再生されます。","ゲノム,遺伝子,塩基配列,可視化","http://youtu.be/_f4f8MDd9cw","http://togotv.dbcls.jp/movie/091217ucscdna.mov","http://doi.org/10.7875/togotv.2009.112","http://togotv.dbcls.jp/images/20091217_0.jpg","091217ucscdna.mov","thumbnail/20091217_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"249","","togotv.2009.111","","20091216","inMeXesを使い倒す","今回の統合TVでは、DBCLSが提供する、文献中の英語表現を軽快に検索するサービスinMeXesを紹介します。 PubMed/MEDLINEに含まれる書誌情報のタイトルやアブストラクトに10回以上出現する2語以上から成る英語表現を入力のたびごとに即座に候補を検索します。結果はPubMed/MEDLINE中での出現頻度と共に表示され、ある動詞の後に続く適切な前置詞を検索したり、ある単語の前後にどういう語がくることが多いかなどを検索することができます。","DBCLS,文献検索,辞書,文章執筆","http://youtu.be/g-XkLcSo2h4","http://togotv.dbcls.jp/movie/091216inmexes.mov","http://doi.org/10.7875/togotv.2009.111","http://togotv.dbcls.jp/images/20091216_0.jpg","091216inmexes.mov","thumbnail/20091216_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"248","","togotv.2009.110","","20091214","二次代謝産物データベースシステムKNApSAcKの使い方","KNApSAcK』とは、生物種と代謝産物の関係を体系化することを目的に開発・公開されている二次代謝産物データベースシステムです。 KNApSAcKでは分子式、分子量、生物種名や実験により得られたマススペクトル解析結果からの化合物検索や、生物系統からの情報検索等を行うことができます。","化合物,データベース","http://youtu.be/MKbt5Oi0v98","http://togotv.dbcls.jp/movie/091214KNApSAcK.mov","http://doi.org/10.7875/togotv.2009.110","http://togotv.dbcls.jp/images/20091214_0.jpg","091214KNApSAcK.mov","thumbnail/20091214_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"247","","togotv.2009.137","","20091209","シンポジウム「科学における情報の上手な権利化と共有化」閉会挨拶","本日の統合TVは、2009年10月5日に開催された シンポジウム「科学における情報の上手な権利化と共有化」 から、情報・システム研究機構 堀田 凱樹 機構長 による「閉会挨拶」をお送りします。約5分です。","講演,DBCLS,トーゴーの日","https://youtu.be/M6wYf_gh2s4","http://togotv.dbcls.jp/movie/091209sympo_hotta.mov","http://doi.org/10.7875/togotv.2009.137","http://togotv.dbcls.jp/images/20091209_0.jpg","091209sympo_hotta.mov","thumbnail/20091209_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"246","","togotv.2009.136","","20091208","OECD データ・アクセス・ガイドラインおよび欧州におけるデータアクセス推進政策動向"," 本日の統合TVは、2009年10月5日に開催された シンポジウム「科学における情報の上手な権利化と共有化」 から、INNOVMOND 主宰 深作 裕喜子 氏 による「OECD データ・アクセス・ガイドラインおよび欧州におけるデータアクセス推進政策動向」をお送りします。約30分です。","講演,DBCLS,トーゴーの日","https://youtu.be/PLmy3ZFyRZg","http://togotv.dbcls.jp/movie/091208sympo_fukasaku.mov","http://doi.org/10.7875/togotv.2009.136","http://togotv.dbcls.jp/images/20091208_0.jpg","091208sympo_fukasaku.mov","thumbnail/20091208_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"245","","togotv.2009.135","","20091207","公表したものは共有財産 Published Materials Are Common Property"," 本日の統合TVは、2009年10月5日に開催された シンポジウム「科学における情報の上手な権利化と共有化」 から、国立国会図書館 館長 長尾 真 氏 による「公表したものは共有財産 Published Materials Are Common Property」をお送りします。約25分です。","講演,DBCLS,トーゴーの日","https://youtu.be/RIUpEacpdMU","http://togotv.dbcls.jp/movie/091207sympo_nagao.mov","http://doi.org/10.7875/togotv.2009.135","http://togotv.dbcls.jp/images/20091207_0.jpg","091207sympo_nagao.mov","thumbnail/20091207_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"244","","togotv.2009.134","","20091206","情報の共有と独占について"," 本日の統合TVは、2009年10月5日に開催された シンポジウム「科学における情報の上手な権利化と共有化」 から、末吉綜合法律事務所 弁護士 末吉 亙 氏 による「情報の共有と独占について」をお送りします。約25分です。","講演,DBCLS,トーゴーの日","https://youtu.be/AtPm6uhktUo","http://togotv.dbcls.jp/movie/091206sympo_sueyoshi.mov","http://doi.org/10.7875/togotv.2009.134","http://togotv.dbcls.jp/images/20091206_0.jpg","091206sympo_sueyoshi.mov","thumbnail/20091206_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"243","","togotv.2009.133","","20091205","デジタル時代の著作権とイノベーション","本日の統合TVは、2009年10月5日に開催された シンポジウム「科学における情報の上手な権利化と共有化」 から、明治大学特任教授、東京大学名誉教授、弁護士 中山 信弘 氏 による「デジタル時代の著作権とイノベーション」をお送りします。約20分です。","講演,DBCLS,トーゴーの日,クリエイティブ・コモンズ","https://youtu.be/CKWSTsq_iN4","http://togotv.dbcls.jp/movie/091205sympo_nakayama.mov","http://doi.org/10.7875/togotv.2009.133","http://togotv.dbcls.jp/images/20091205_0.jpg","091205sympo_nakayama.mov","thumbnail/20091205_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"242","","togotv.2009.132","","20091204","デジタル科学への最後のステップ"," 本日の統合TVは、2009年10月5日に開催された シンポジウム「科学における情報の上手な権利化と共有化」 から、国立遺伝学研究所 大久保 公策 教授 による「デジタル科学への最後のステップ」をお送りします。約20分です。","講演,DBCLS,トーゴーの日","https://youtu.be/AJA2LUYNngs","http://togotv.dbcls.jp/movie/091204sympo_okubo.mov","http://doi.org/10.7875/togotv.2009.132","http://togotv.dbcls.jp/images/20091204_0.jpg","091204sympo_okubo.mov","thumbnail/20091204_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"241","","togotv.2009.131","","20091203","シンポジウム「科学における情報の上手な権利化と共有化」開会挨拶","本日の統合TVは、2009年10月5日に開催された シンポジウム「科学における情報の上手な権利化と共有化」 から、ライフサイエンス統合データベースセンター 高木 利久 による「開会挨拶」をお送りします。約6分です。","講演,DBCLS,トーゴーの日","https://youtu.be/ONDL0cL8Img","http://togotv.dbcls.jp/movie/091203sympo_takagi.mov","http://doi.org/10.7875/togotv.2009.131","http://togotv.dbcls.jp/images/20091203_0.jpg","091203sympo_takagi.mov","thumbnail/20091203_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"240","","togotv.2009.130","","20091202","パネルディスカッション: これからの統合データベース","本日の統合TVは、2009年6月12日に開催された 文部科学省 統合データベースプロジェクト「データベースが拓くこれからのライフサイエンス」シンポジウム から、「パネルディスカッション: これからの統合データベース」をお送りします。約37分です。","講演,DBCLS,トーゴーの日","https://youtu.be/4_p69CRp3FY","http://togotv.dbcls.jp/movie/091202sympo_panel.mov","http://doi.org/10.7875/togotv.2009.130","http://togotv.dbcls.jp/images/20091202_0.jpg","091202sympo_panel.mov","thumbnail/20091202_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"239","","togotv.2009.129","","20091201","トキシコゲノミクスプロジェクトで構築したデータベースとその応用","本日の統合TVは、2009年6月12日に開催された 文部科学省 統合データベースプロジェクト「データベースが拓くこれからのライフサイエンス」シンポジウム から、独立行政法人 医薬基盤研究所 基盤的研究部 トキシコゲノミクス・インフォマティクスプロジェクト 山田 弘 サブプロジェクトリーダー による「トキシコゲノミクスプロジェクトで構築したデータベースとその応用」をお送りします。約35分です。","講演,DBCLS,トーゴーの日","https://youtu.be/zBXNmTfejhU","http://togotv.dbcls.jp/movie/091201sympo_yamada.mov","http://doi.org/10.7875/togotv.2009.129","http://togotv.dbcls.jp/images/20091201_0.jpg","091201sympo_yamada.mov","thumbnail/20091201_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"238","","togotv.2009.128","","20091130","蛋白質構造データバンク事業と国際的な展開","本日の統合TVは、2009年6月12日に開催された 文部科学省 統合データベースプロジェクト「データベースが拓くこれからのライフサイエンス」シンポジウム から、大阪大学蛋白質研究所 中村 春木 教授による「蛋白質構造データバンク事業と国際的な展開」をお送りします。約32分です。","講演,DBCLS,トーゴーの日","https://youtu.be/4HnYRqBvHmY","http://togotv.dbcls.jp/movie/091130sympo_nakamura.mov","http://doi.org/10.7875/togotv.2009.128","http://togotv.dbcls.jp/images/20091130_0.jpg","091130sympo_nakamura.mov","thumbnail/20091130_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"237","","togotv.2009.127","","20091129","経済産業省ライフサイエンス統合DBプロジェクトのポータルサイトMEDALS","本日の統合TVは、2009年6月12日に開催された 文部科学省 統合データベースプロジェクト「データベースが拓くこれからのライフサイエンス」シンポジウム から、バイオ産業情報化コンソーシアム(JBIC)研究開発本部 村上 勝彦 研究員による「経済産業省ライフサイエンス統合DBプロジェクトのポータルサイトMEDALS」をお送りします。約40分です。","講演,DBCLS,トーゴーの日","https://youtu.be/sRKf2BJ8e-A","http://togotv.dbcls.jp/movie/091129sympo_murakami.mov","http://doi.org/10.7875/togotv.2009.127","http://togotv.dbcls.jp/images/20091129_0.jpg","091129sympo_murakami.mov","thumbnail/20091129_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"236","","togotv.2009.126","","20091128","統合データベースプロジェクト: オープンで知のめぐりの良いライフサイエンス研究を目指して","本日の統合TVは、2009年6月12日に開催された 文部科学省 統合データベースプロジェクト「データベースが拓くこれからのライフサイエンス」シンポジウム から、ライフサイエンス統合データベースセンター 坊農 秀雅 による「統合データベースプロジェクト: オープンで知のめぐりの良いライフサイエンス研究を目指して」をお送りします。約33分です。","講演,DBCLS,トーゴーの日","https://youtu.be/8Q2fM3x8h9I","http://togotv.dbcls.jp/movie/091128sympo_bono.mov","http://doi.org/10.7875/togotv.2009.126","http://togotv.dbcls.jp/images/20091128_0.jpg","091128sympo_bono.mov","thumbnail/20091128_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"235","","togotv.2009.125","","20091127","わが国ライフサイエンスデータベースの現状と統合データベースセンターへの要望","本日の統合TVは、2009年6月12日に開催された 文部科学省 統合データベースプロジェクト「データベースが拓くこれからのライフサイエンス」シンポジウム から、協和発酵キリン株式会社 平田 正 名誉相談役 による「わが国ライフサイエンスデータベースの現状と統合データベースセンターへの要望」をお送りします。約28分です。","講演,DBCLS,トーゴーの日","https://youtu.be/1qgoezEevIM","http://togotv.dbcls.jp/movie/091127sympo_hirata.mov","http://doi.org/10.7875/togotv.2009.125","http://togotv.dbcls.jp/images/20091127_0.jpg","091127sympo_hirata.mov","thumbnail/20091127_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"234","","togotv.2009.109","","20091126","UCSC Genome Browserの使い方 〜表示編〜","UCSC Genome Browserは、 米国カリフォルニア大学サンタクルーズ校(UCSC)が開発、維持しているゲノムブラウザ、ゲノムアノテーション閲覧システムです。ゲノムブラウザとはアノテーションが付加された遺伝子のゲノム上の位置やその周辺を表示するツールのことです。今回は以前番組で紹介した、UCSC Genome Browserを使った興味のある遺伝子の検索、結果の表示までの基本編に続いて、得られた表示結果の見方、使い方などを詳しく説明しています。","遺伝子,塩基配列","http://youtu.be/ua33v-440IU","http://togotv.dbcls.jp/movie/091126ucscBrowser.mov","http://doi.org/10.7875/togotv.2009.109","http://togotv.dbcls.jp/images/20091126_0.jpg","091126ucscBrowser.mov","thumbnail/20091126_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"233","","togotv.2009.108","","20091120","統合データベース講習会:AJACSりんくう〜DNAデータベースの使い方〜","本日の統合TVは、2009年11月6日に大阪府立大学りんくうキャンパスにて開催された 統合データベース講習会:AJACSりんくう から、国立遺伝学研究所生命情報・DDBJ研究センター 小笠原理 先生 による「DNAデータベースの使い方(DNAデータバンクには何が入っているか)」をお送りします。実際にDDBJ (DNA Data Bank of Japan) でDNAデータバンク事業に関わっていらっしゃる先生に、データベースの見方、検索のコツを講演していただきました。さらに、データバンクのデータを再整理してライフサイエンス統合データベースプロジェクトからサービスしている、DNAデータベース総覧と検索についても紹介していただきました。約30分です。","実習, AJACS,データベース","http://youtu.be/k5cuBGgfQ7w","http://togotv.dbcls.jp/movie/091120AJACS14_ri.mov","http://doi.org/10.7875/togotv.2009.108","http://togotv.dbcls.jp/images/20091120_0.jpg","091120AJACS14_ri.mov","thumbnail/20091120_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"232","","togotv.2009.107","","20091119","統合データベース講習会:AJACSりんくう〜FANTOM4プロジェクトに見る次世代シーケンサの可能性とデータベース〜","本日の統合TVは、2009年11月6日に大阪府立大学りんくうキャンパスにて開催された 統合データベース講習会:AJACSりんくう から、理化学研究所オミックス基盤研究領域 川路英哉 先生 による招待講演「FANTOM4プロジェクトに見る次世代シーケンサの可能性とデータベース」をお送りします。理化学研究所オミックス基盤研究領域が主催する国際研究コンソーシアム、FANTOM4 (Functional Annotation of the Mammalian Genome)プロジェクトの紹介と、FANTOM4でメインに使われた次世代シーケンサについて、その可能性についてご紹介いただきました。また、大量のデータを扱う上でのデータベースのあり方についても紹介いただきました。約30分です。","実習, AJACS,NGS,データベース,FANTOM","http://youtu.be/q99Q2cuAvOY","http://togotv.dbcls.jp/movie/091119AJACS14_kwj.mov","http://doi.org/10.7875/togotv.2009.107","http://togotv.dbcls.jp/images/20091119_0.jpg","091119AJACS14_kwj.mov","thumbnail/20091119_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"231","","togotv.2009.106","","20091118","統合データベース講習会:AJACSりんくう〜科学データは誰のものか〜","本日の統合TVは、2009年11月6日に大阪府立大学りんくうキャンパスにて開催された 統合データベース講習会:AJACSりんくう から、国立遺伝学研究所生命情報・DDBJ研究センター センター長、ライフサイエンス統合データベースセンター 大久保公策 教授 による特別講演「科学データはだれのものか〜デジタル科学の最後のステップ〜」をお送りします。デジタル時代におけるデータ共有のあり方を、ご自身の体験を交えながらお話しいただきました。約52分です。","講演, AJACS","http://youtu.be/uMqbO9TNZLY","http://togotv.dbcls.jp/movie/091118AJACS14_ko.mov","http://doi.org/10.7875/togotv.2009.106","http://togotv.dbcls.jp/images/20091118_0.jpg","091118AJACS14_ko.mov","thumbnail/20091118_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"230","","togotv.2009.105","","20091117","統合データベース講習会:AJACSりんくう〜生物アイコン〜","本日の統合TVは、2009年11月6日に大阪府立大学りんくうキャンパスにて開催された 統合データベース講習会:AJACSりんくう から、ライフサイエンス統合データベースセンター 坂東明日佳 による「生物アイコン〜生物種画像レポジトリサイトの紹介〜」をお送りします。ライフサイエンス統合データベースセンターで提供している生物アイコンの利用法や使用例の紹介、アイコン配布に利用しているクリエイティブコモンズライセンスについてわかりやすく説明されています。センターでは生物アイコン作成に利用するために、皆様がお持ちの生き物の写真を募集しております。ぜひ、皆さんのご協力をお願いします!約19分です。","講演, AJACS","http://youtu.be/M7Wluw4ypYo","http://togotv.dbcls.jp/movie/091117AJACS14_bando.mov","http://doi.org/10.7875/togotv.2009.105","http://togotv.dbcls.jp/images/20091117_0.jpg","091117AJACS14_bando.mov","thumbnail/20091117_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"229","","togotv.2009.104","","20091116","第47回日本生物物理学会年会 ランチョンセミナー 〜多様なデータが広く活用されるために〜","本日の統合TVは、2009年10月31日にアスティ徳島にて開催された 第47回日本生物物理学会年会 ランチョンセミナー 「データベース統合の多面的展開」から、ライフサイエンス統合データベースセンター 畠中秀樹 特任准教授 による「多様なデータが広く活用されるために」をお送りします。生命科学系データベースアーカイブサービス、ならびに現在開発中のタンパク質IDによるデータベースの横断検索(名称未定)の紹介です。約22分です。","DBCLS,講演,タンパク質","http://youtu.be/A7xYpuXHh10","http://togotv.dbcls.jp/movie/091116bp_hatanaka.mov","http://doi.org/10.7875/togotv.2009.104","http://togotv.dbcls.jp/images/20091116_0.jpg","091116bp_hatanaka.mov","thumbnail/20091116_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"228","","togotv.2009.103","","20091115","第47回日本生物物理学会年会 ランチョンセミナー 〜統合DBプロジェクトのサービス紹介 データベースを役立てよう〜","本日の統合TVは、2009年10月31日にアスティ徳島にて開催された 第47回日本生物物理学会年会 ランチョンセミナー 「データベース統合の多面的展開」から、ライフサイエンス統合データベースセンター 川本祥子 特任准教授 による「統合DBプロジェクトのサービス紹介〜データベースを役立てよう〜」をお送りします。プロジェクトの概要、提供しているサービス(データベースカタログ、横断検索、inMeXes、統合TV)の紹介です。約32分です。","DBCLS,講演,文献検索,文章執筆","http://youtu.be/TKpcnfcwRhg","http://togotv.dbcls.jp/movie/091115bp_sk.mov","http://doi.org/10.7875/togotv.2009.103","http://togotv.dbcls.jp/images/20091115_0.jpg","091115bp_sk.mov","thumbnail/20091115_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"227","","togotv.2009.102","","20091114","第47回日本生物物理学会年会 ランチョンセミナー 〜はじめに〜","本日の統合TVは、2009年10月31日にアスティ徳島にて開催された 第47回日本生物物理学会年会 ランチョンセミナー 「データベース統合の多面的展開」から、ライフサイエンス統合データベースセンター センター長 高木利久 による開催趣旨・背景説明をお送りします。約5分です。","DBCLS,講演","http://youtu.be/mo1HtBtg7oo","http://togotv.dbcls.jp/movie/091114bp_takagi.mov","http://doi.org/10.7875/togotv.2009.102","http://togotv.dbcls.jp/images/20091114_0.jpg","091114bp_takagi.mov","thumbnail/20091114_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"226","","togotv.2009.101","","20091113","UCSC Genome Browserの使い方 〜基本編〜","UCSC Genome Browserは、 米国カリフォルニア大学サンタクルーズ校(UCSC)が開発、維持しているゲノムブラウザ、ゲノムアノテーション閲覧システムです。ゲノムブラウザとはアノテーションが付加された遺伝子のゲノム上の位置やその周辺を表示するツールのことです。UCSC Genome Browserの他のコンテンツとしては以前の番組でも紹介した高速アラインメントツールBLATや遺伝子間の関連性を探索するGene Sorterなどがあります。今回は、UCSC Genome Browserを使って、興味のある遺伝子を検索し、結果を表示するまでの基本的な使い方を説明しています。","遺伝子,塩基配列,UCSC,ゲノム","http://youtu.be/Ffdus14p2fE","http://togotv.dbcls.jp/movie/091113ucscBase.mov","http://doi.org/10.7875/togotv.2009.101","http://togotv.dbcls.jp/images/20091113_0.jpg","091113ucscBase.mov","thumbnail/20091113_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"225","","togotv.2009.100","","20091112","EMBOSS wordmatcherを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、wordmatcherについて紹介しています。wordmatcherを使うと2配列間で同一(完全一致)部分を見つけることができます。","EMBOSS,塩基配列,配列解析,アミノ酸","http://youtu.be/3x7lYNDG36k","http://togotv.dbcls.jp/movie/091112wordmatcher.mov","http://doi.org/10.7875/togotv.2009.100","http://togotv.dbcls.jp/images/20091112_0.jpg","091112wordmatcher.mov","thumbnail/20091112_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"224","","togotv.2009.099","","20091106","EMBOSS waterを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、waterについて紹介しています。waterを使うと、Smith-Waterman法 を用いた2配列間のアラインメントを行うことができます。","EMBOSS,塩基配列,配列解析,アミノ酸,アラインメント","http://youtu.be/uEyDwRkDxlg","http://togotv.dbcls.jp/movie/091106water.mov","http://doi.org/10.7875/togotv.2009.099","http://togotv.dbcls.jp/images/20091106_0.jpg","091106water.mov","thumbnail/20091106_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"223","","togotv.2009.098","","20091105","UCSC Gene Sorterを使って遺伝子間の関連性を探索する","UCSC Gene Sorterは、 米国カリフォルニア大学サンタクルーズ校(UCSC)が開発、維持しているUCSC Genome Browser の中のコンテンツの一つです。他のコンテンツとしては以前の番組でも紹介した高速アラインメントツールBLATなどがあります。UCSC Gene Sorterは、興味のある遺伝子周辺もしくは遺伝子同士の関連性を、UCSC Genome Browserが持つさまざまなデータを文字通り「ソート」することによって容易に探索することができるツールです。関連性のある遺伝子をリストアップした後、それらの遺伝子に関するIDや配列をまとめて取得することができます。今回は、脂肪細胞のマーカーとして用いられることの多いFABP4(Fatty Acid Binding Protein 4)を例にして使い方を説明しています。","UCSC,遺伝子,発現解析,塩基配列","http://youtu.be/CrKtEFS0_TA","http://togotv.dbcls.jp/movie/091105geneSorter.mov","http://doi.org/10.7875/togotv.2009.098","http://togotv.dbcls.jp/images/20091105_0.jpg","091105geneSorter.mov","thumbnail/20091105_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"222","","togotv.2009.097","","20091031","DNAデータベース総覧と検索を使い倒す〜配列検索編〜","DNAデータベース総覧と検索は、文部科学省統合データベースプロジェクトにおいて開発、維持されている、巨大な国際DNAバンク(INSD(International Nucleotide Sequence Database)と呼ばれるDDBJ/EMBL/GenBankのことです)を高速に検索し生物種、分子、プロジェクト別に分類して表示するシステムです。 ある研究機関から発表されたある生物のゲノムデータを一括してダウンロードするというような研究単位でのデータ取得ができます。BLASTによる配列検索、核酸関連の特許公報へのダイレクトリンク、レコードの時系列展開も可能です。 今回はその使い方の配列検索編で、ブタの脂肪代謝遺伝子(PPARG)の配列検索を例にとって紹介しています。","塩基配列,遺伝子,データベース,特許","http://youtu.be/sgj6hXaZBbM","http://togotv.dbcls.jp/movie/091031dnasoran2.mov","http://doi.org/10.7875/togotv.2009.097","http://togotv.dbcls.jp/images/20091031_0.jpg","091031dnasoran2.mov","thumbnail/20091031_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"221","","togotv.2009.096","","20091030","EMBOSS emmaを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、emmaについて紹介しています。 emmaは複数の塩基配列やアミノ酸配列をできるかぎり一致するように並べる(多重(マルチプル)アラインメント)ツールです。アラインメントは、タンパク質ファミリーの保存残基を探したり、二次構造や三次構造の予測を助けたり、PCRプライマーの設計に一役買ったり、分子進化解析の基礎データともなります。 ここでは、例としてヒト、マウス、ブタの各生物種における脂肪代謝遺伝子peroxisome proliferator-activated receptor(PPAR)ファミリーの塩基配列をサンプル配列として多重アラインメントを行い、系統樹を作成する方法を説明します。","EMBOSS,配列解析,塩基配列,アラインメント","http://youtu.be/QZkK5zUKez0","http://togotv.dbcls.jp/movie/091030emma.mov","http://doi.org/10.7875/togotv.2009.096","http://togotv.dbcls.jp/images/20091030_0.jpg","091030emma.mov","thumbnail/20091030_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"220","","togotv.2009.095","","20091029","NEXTBIOを使い倒す","NEXTBIOは、米国NEXTBIO社の検索システムで、膨大な数のあらゆるライフサイエンスに関する情報を、自分の目的に応じて複合的に検索できるシステムです。 NEXTBIOでは1つのキーワードから、文献・詳細な研究内容・遺伝子発現情報・疾患・化合物・臨床試験など、関連する様々な情報が一度に検索できます。また研究者自身の持つデータをデータベースに登録することも可能です。","遺伝子,発現解析,文献検索,疾患情報,化合物","http://youtu.be/30DtIfjUSGU","http://togotv.dbcls.jp/movie/091029NEXTBIO.mov","http://doi.org/10.7875/togotv.2009.095","http://togotv.dbcls.jp/images/20091029_0.jpg","091029NEXTBIO.mov","thumbnail/20091029_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"219","","togotv.2009.094","","20091022","DNAデータベース総覧と検索を使い倒す〜基本編","DNAデータベース総覧と検索は、文部科学省統合データベースプロジェクトにおいて開発、維持されている、巨大な国際DNAバンク(INSD(International Nucleotide Sequence Database)と呼ばれるDDBJ/EMBL/GenBankのことです)を高速に検索し生物種、分子、プロジェクト別に分類して表示するシステムです。 ある研究機関から発表されたある生物のゲノムデータを一括してダウンロードするというような研究単位でのデータ取得ができます。BLASTによる配列検索、核酸関連の特許公報へのダイレクトリンク、レコードの時系列展開も可能です。 今回はその使い方の基本編を紹介しています。","DBCLS,塩基配列,遺伝子,特許","http://youtu.be/lp3rR1VmR2M","http://togotv.dbcls.jp/movie/091022dnasoran.mov","http://doi.org/10.7875/togotv.2009.094","http://togotv.dbcls.jp/images/20091022_0.jpg","091022dnasoran.mov","thumbnail/20091022_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"218","","togotv.2009.093","","20091016","統合TVの使い方 2009","統合TVのコンテンツ数は放送開始から2年を経て200を超えました。コンテンツ数の増加とともに自分が使いたいデータベースやツールが見つかりにくくなってきたかもしれません。そこで今回の番組では、統合TV内での番組検索の仕方を中心に統合TV自体の使い方を紹介します。","DBCLS","http://youtu.be/irIZlqDkIWY","http://togotv.dbcls.jp/movie/091016togotv2009.mov","http://doi.org/10.7875/togotv.2009.093","http://togotv.dbcls.jp/images/20091016_0.jpg","091016togotv2009.mov","thumbnail/20091016_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"217","","togotv.2009.092","","20091015","Allieを使って略語の正式名称を検索する2009","Allie(「アリー」と発音します)は、 ライフサイエンス統合データベースセンター(DBCLS)が提供する医学生物系論文書誌情報データベースMEDLINEを対象とし、出現する略語(略字)とその正式名称のペアを検索するシステムです。 生命科学系の論文では非常に多くの略語が使われており、同じ表記でも全く違う意味を示していることが少なくありません。Allieでは、利用者の興味のある略語を検索語として入力することで、その使われ方をMEDLINE中によく現れる順で一覧表示すると共に、その略語が使われた論文の発表年を提示しています。また、検索された各略語について、その意味で使われている論文中で共起する他の略語も同時に検索されることが特徴です。","DBCLS,文献検索,辞書","http://youtu.be/rChJRJ0aSL8","http://togotv.dbcls.jp/movie/091015allie.mov","http://doi.org/10.7875/togotv.2009.092","http://togotv.dbcls.jp/images/20091015_0.jpg","091015allie.mov","thumbnail/20091015_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"216","","togotv.2009.091","","20091008","生命科学データベース横断検索を使い倒す","DBCLSが統合ホームページで提供している横断検索では、従来の基本的な分子生物学系データベースに加えて、特許のデータベースや「蛋白質 核酸酵素」の過去記事(1985年〜2005年)も検索対象となっており、一度にこれらすべてのデータベースに検索がかかるようになっています。今回の統合TVでは、横断検索の基本的な使い方および注意点について説明します。","文献検索,特許","http://youtu.be/GvRy9uUXrbE","http://togotv.dbcls.jp/movie/091008searchDB.mov","http://doi.org/10.7875/togotv.2009.091","http://togotv.dbcls.jp/images/20091008_0.jpg","091008searchDB.mov","thumbnail/20091008_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"215","","togotv.2009.090","","20090925","DAVIDを使ってマイクロアレイデータを解析する","DAVIDはマイクロアレイ実験から得られたデータを解析するツールです。このツールを使うことで発現変動のあった遺伝子群の特徴を可視化し、直感的に分析することができます。DAVIDという名前はThe Database for Annotation, Visualization and Integrated Discoveryの頭文字に由来しています。ムービーではサンプルデータとして、NCBI GEOに登録されている公共の遺伝子発現データ(GSE17913:Effects of Cigarette Smoke on the Human Oral Mucosal Transcriptome)からGEO2Rを用いて取得した、喫煙者女性と非喫煙者女性の口腔内で発現に差のある250個の遺伝子群のリストを使って説明しています。","遺伝子,発現解析,可視化","http://youtu.be/YgHqJQF_RCE","http://togotv.dbcls.jp/movie/090925david.mov","http://doi.org/10.7875/togotv.2009.090","http://togotv.dbcls.jp/images/20090925_0.jpg","090925david.mov","thumbnail/20090925_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"214","","togotv.2009.089","","20090924","EMBOSS needleを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、needleについて紹介しています。needleを使うと、Needleman-Wunsch global algorithm を用いた2配列間のアラインメントを行うことができます。","EMBOSS,塩基配列,配列解析,アミノ酸,アラインメント","http://youtu.be/b8rlrNGBzqA","http://togotv.dbcls.jp/movie/090924needle.mov","http://doi.org/10.7875/togotv.2009.089","http://togotv.dbcls.jp/images/20090924_0.jpg","090924needle.mov","thumbnail/20090924_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"213","","togotv.2009.088","","20090922","データベースからの生命科学@AJACS蝦夷2","本日の統合TVは、2009年9月7日に北海道大学にて開催された「統合データベース講習会:AJACS蝦夷2」から、お茶の水女子大学・理学部情報科学科の瀬々潤 准教授による招待講演「データベースからの生命科学」をお送りします。情報系の研究者から見た生命科学研究について、実例を交えながら大変わかりやすく解説していただきました。","講演, AJACS,データベース","http://youtu.be/c3zT_Hv60CI","http://togotv.dbcls.jp/movie/090907sese.mov","http://doi.org/10.7875/togotv.2009.088","http://togotv.dbcls.jp/images/20090922_0.jpg","090907sese.mov","thumbnail/20090922_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"212","","togotv.2009.087","","20090918","EMBOSS dottupを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、dottupについて紹介しています。dottupを使うと、2配列間の一致した部分をドットでグラフ上に表現することで、塩基配列の相同性を直感的に確認することができます。","EMBOSS,塩基配列,配列解析,アミノ酸","http://youtu.be/tUr1KIRB_3g","http://togotv.dbcls.jp/movie/090918dottup.mov","http://doi.org/10.7875/togotv.2009.087","http://togotv.dbcls.jp/images/20090918_0.jpg","090918dottup.mov","thumbnail/20090918_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"211","","togotv.2009.086","","20090905","Spotfireを用いたSNP解析における頻度差の可視化","今回の統合TVでは、データ可視化ツールであるSpotfire DecisionSiteを用いたSNP解析の一事例を紹介します。複数の集団でタイピングされたSNP(1塩基多型)の多型頻度差をお互いに関連付けて、多型頻度の集団による違いをプロットによって視覚化する例を紹介します。SNPのデータはHapMapプロジェクトが提供するHapMartから、容易に取得することができます。今回例として用いたデータは、HapMartで得られるJapanese、Yoruba、Han ChineseのSNPデータです。","可視化,多型,遺伝子,ゲノム","http://youtu.be/-uyd6s_zahs","http://togotv.dbcls.jp/movie/090905snp.mov","http://doi.org/10.7875/togotv.2009.086","http://togotv.dbcls.jp/images/20090905_0.jpg","090905snp.mov","thumbnail/20090905_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"210","","togotv.2009.085","","20090904","EMBOSS mergerを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、mergerについて紹介しています。 mergerを使うと、入力した2つの塩基配列をアラインメントすることができます。mergerの場合、オプションとしてギャップ開始ペナルティとギャップ伸長ペナルティの値を自由に設定することができます。","EMBOSS,塩基配列,配列解析,アミノ酸,アラインメント","http://youtu.be/LOglZAQXCqw","http://togotv.dbcls.jp/movie/090904merge.mov","http://doi.org/10.7875/togotv.2009.085","http://togotv.dbcls.jp/images/20090904_0.jpg","090904merge.mov","thumbnail/20090904_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"209","","togotv.2009.084","","20090903","SOSUIとTMHMMを使って膜タンパク質の膜貫通領域を予測する",""" target=""_blank"">SOSUIと"" target=""_blank"">TMHMMは、アミノ酸配列を元に、膜タンパク質であるかどうかの判別や、膜貫通領域を予測するツールです。"" target=""_blank"">SOSUIは配列相同性などを参照しない物理化学的な手法により、99%という高精度で膜タンパク質を判別することができます。また、"" target=""_blank"">TMHMM (Transmembrane Hidden Markov Model) は、隠れマルコフモデルを使った膜貫通領域予測ツールです。 今回はウシロドプシン(Bovine Rhodopsin)のアミノ酸配列を例として、検索の方法を解説します。","アミノ酸,タンパク質,構造解析,ウェブツール","http://youtu.be/BOZ6fH0_TCQ","http://togotv.dbcls.jp/movie/090903SOSUI.mov","http://doi.org/10.7875/togotv.2009.084","http://togotv.dbcls.jp/images/20090903_0.jpg","090903SOSUI.mov","thumbnail/20090903_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"208","","togotv.2009.083","","20090902","SigmaAldrichのYour Favorite Geneを使ってパスウェイや相互作用ネットワークを可視化する","Sigma-AldrichのYour Favorite Geneは、遺伝子や疾患、組織、パスウェイなどを検索対象として、そのパスウェイや相互作用ネットワークを表示させるツールです。今回は「PPAR-γ」と呼ばれる脂肪細胞分化や筋肉でのグルコース取り込みに関係する核内レセプターを例として用いて、そのパスウェイや相互作用ネットワークを表示させています。 また、今回紹介している機能に加えて、Ingenuity Pathways Analysis(IPA)のライセンスを購入することによって、より多くの機能を使用することが出来ます。","パスウェイ解析,ウェブツール,遺伝子","http://youtu.be/y1obEwu7P0U","http://togotv.dbcls.jp/movie/090902sigma_aldrich.mov","http://doi.org/10.7875/togotv.2009.083","http://togotv.dbcls.jp/images/20090902_0.jpg","090902sigma_aldrich.mov","thumbnail/20090902_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"207","","togotv.2009.082","","20090829","QUMAを使い倒す2、統計解析モード","QUMA(QUantification tool for Methylation Analysis)とはBisulfite sequencing法はDNAメチル化の解析に広く用いられている方法ですが、得られた配列の処理と解析は大変困難であり、非常に手間のかかる作業です。このQUMAは技術の成熟度に関係なく、条件が同じなら誰が行っても、たった数秒で同じ結果が得られるという、大変便利で簡単なツールです。QUMAには2通りの使い方があり、用途に合わせて使い分けることが出来ます。今回は統計解析モードについて紹介します。","ゲノム,遺伝子,配列解析,可視化,ウェブツール","http://youtu.be/m7zphrmhYGY","http://togotv.dbcls.jp/movie/090829QUMA2.mov","http://doi.org/10.7875/togotv.2009.082","http://togotv.dbcls.jp/images/20090829_0.jpg","090829QUMA2.mov","thumbnail/20090829_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"206","","togotv.2009.081","","20090828","QUMAを使い倒す1、メチル化状態解析モード","QUMA(くま):QUantification tool for Methylation Analysis とは、熊木 勇一 氏と岡野 正樹 氏(理化学研究所 発生・再生科学総合研究センター 哺乳類エピジェネティクス研究チーム)によって開発された、バイサルファイト配列の解析ツールです。Bisulfite sequencing法はDNAメチル化の解析に広く用いられている方法ですが、得られた配列の処理と解析は大変困難であり、非常に手間のかかる作業です。このQUMAは技術の成熟度に関係なく、条件が同じなら誰が行っても、たった数秒で同じ結果が得られるという、大変便利で簡単なツールです。QUMAには2通りの使い方があり、用途に合わせて使い分けることが出来ます。今回はメチル化状態解析モードについて紹介します。","ゲノム,遺伝子,配列解析,可視化,ウェブツール","http://youtu.be/zZ7AbwQTURU","http://togotv.dbcls.jp/movie/090828QUMA2.mov","http://doi.org/10.7875/togotv.2009.081","http://togotv.dbcls.jp/images/20090828_0.jpg","090828QUMA2.mov","thumbnail/20090828_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"205","","togotv.2009.080","","20090822","Spotfireを用いた比較トランスクリプトミクス","今回の統合TVでは、データ可視化ツールであるSpotfire DecisionSiteを用いたマイクロアレイ解析の一事例を紹介します。 マイクロアレイ上に載っている遺伝子群(プローブセット)を異なる生物種間(今回はヒトとマウス)で対応付けを行い、同じ臓器での発現パターンを比較解析する例を紹介します。マイクロアレイIDの対応付けはEnsemblのBioMartで容易に取得することができます。今回例として用いたデータは、BioGPSで閲覧できるヒト・マウスの各組織・細胞株のマイクロアレイデータです。","可視化,発現解析,遺伝子,ゲノム","http://youtu.be/woTlJkbxZM0","http://togotv.dbcls.jp/movie/090822transcriptomics.mov","http://doi.org/10.7875/togotv.2009.080","http://togotv.dbcls.jp/images/20090822_0.jpg","090822transcriptomics.mov","thumbnail/20090822_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"204","","togotv.2009.079","","20090821","EMBOSS sixpackを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、sixpackについて紹介しています。 sixpackを使うと、入力した塩基配列をアミノ酸配列に翻訳することができます。sixpackの場合、6つの読み枠を一度に表示することができます。最も終止コドンの出現が少ない翻訳パターンを探すことで正しいアミノ酸配列と塩基配列のコドン位置を推測できます。今回はサンプル配列としてヒトの脂肪代謝遺伝子peroxisome proliferator-activated receptor(PPAR) gammaの塩基配列をアミノ酸配列に翻訳する場合を例に説明しています。","EMBOSS,塩基配列,配列解析,アミノ酸","http://youtu.be/LDBhfkgowKQ","http://togotv.dbcls.jp/movie/090821sixpack.mov","http://doi.org/10.7875/togotv.2009.079","http://togotv.dbcls.jp/images/20090821_0.jpg","090821sixpack.mov","thumbnail/20090821_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"203","","togotv.2009.078","","20090814","NCBI Biosystemsを使ってレチナールの代謝経路を調べる","NCBIの提供するBioSystemsは、KEGGやBioCycといったパスウェイ(経路)のデータベースをNCBIの各種ツール(MMDB, PubMedなど)と連動させたもので、NCBI Structureツールの一つとして提供されています。 例としてレチナールの代謝経路を取り上げ、基本的なBioSystemsの使い方を解説します。","パスウェイ解析,NCBI","http://youtu.be/8lB9jjM9RWk","http://togotv.dbcls.jp/movie/090814BioSystems.mov","http://doi.org/10.7875/togotv.2009.078","http://togotv.dbcls.jp/images/20090814_0.jpg","090814BioSystems.mov","thumbnail/20090814_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"202","","togotv.2009.077","","20090809","Spotfireを用いたマイクロアレイデータのゲノム上の位置情報による統合と可視化","今回の統合TVでは、データ可視化ツールであるSpotfire DecisionSiteを用いたマイクロアレイ解析の一事例を紹介します。概要としては、究極の物理地図であるゲノム配列(golden pathと呼ばれる)を元にして、ゲノム上での各遺伝子の位置情報をマイクロアレイデータと関連付けた後、トレリス(trellis)の機能を使って染色体ごとに分け、ゲノム上の位置の順番に並べて発現比のヒートマップ表示を行う、という流れです。 今回例として用いたデータは、BioGPSで閲覧できるマウスの各組織・細胞株のマイクロアレイデータ(GSE10246)です。","可視化,発現解析,遺伝子,ゲノム","http://youtu.be/c2hQh4SVU1M","http://togotv.dbcls.jp/movie/090809spotfireCh.mov","http://doi.org/10.7875/togotv.2009.077","http://togotv.dbcls.jp/images/20090809_0.jpg","090809spotfireCh.mov","thumbnail/20090809_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"201","","togotv.2009.076","","20090808","Spotfireを用いたマイクロアレイデータのGene Ontologyによるアノテーション","今回の統合TVでは、データ可視化ツールであるSpotfire DecisionSiteを用いたマイクロアレイ解析の一事例を紹介します。概要としては、公共マイクロアレイデータベースから取得したマイクロアレイデータに対し、各プローブに GO Term を対応付け、異なる条件下で発現が変わる遺伝子群の生物学的な意味を考察できるよう可視化する、という流れです。 今回例として用いたデータは、ヒトの脂肪細胞分化のマイクロアレイデータ(GSE1657)を一部改変したサンプルデータを用いています。","可視化,発現解析,遺伝子","http://youtu.be/-2ihihR-XhY","http://togotv.dbcls.jp/movie/090808spotfireGO.mov","http://doi.org/10.7875/togotv.2009.076","http://togotv.dbcls.jp/images/20090808_0.jpg","090808spotfireGO.mov","thumbnail/20090808_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"200","","togotv.2009.075","","20090807","The Arabidopsis Information Resource (TAIR)を使い倒す","The Arabidopsis Information Resource (TAIR) とは、カーネギー財団の植物生物学研究部門と米国国立ゲノムリソースセンターとの共同プロジェクトとして、Arabidopsis thaliana(シロイヌナズナ)の総合的なゲノム情報を提供しているデータベースです。TAIRでは、全塩基配列が決定したゲノム情報をはじめ、幅広い情報が提供されています。 GOコンソーシアムの一員としてGene Ontology(GO)の構築と発展に大きく寄与しており、植物ゲノム研究の中心として位置づけることができる優れたデータベースです。","ゲノム,タンパク質,遺伝子,塩基配列,発現解析,植物","http://youtu.be/e1uIYjUREuU","http://togotv.dbcls.jp/movie/090807TAIR.mov","http://doi.org/10.7875/togotv.2009.075","http://togotv.dbcls.jp/images/20090807_0.jpg","090807TAIR.mov","thumbnail/20090807_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"199","","togotv.2009.074","","20090806","GO Terms Classifications Counterを使ってマイクロアレイデータを可視化する","GO Terms Classifications Counterは、マイクロアレイ実験などで得られた発現変動のあった遺伝子群に付けられたGO termのフラットファイルをuploadすると分類して可視化(集計表とパイチャート)してくれるツールです。このツールを使うことで、発現変動のあった遺伝子群の特徴を概観することができます。なお、現在では「CateGOrizer」として名称が変更されています。ムービーではサンプルデータとして、NCBI GEOより取得した公共の遺伝子発現データ(GSE1657:Adipocyte Differentiation[Homo sapiens])を用いて、脂肪細胞の分化過程で発現増加した上位100個の遺伝子群のGO IDのリストを使って説明しています。","遺伝子,発現解析,可視化","http://youtu.be/mP_fEypmaHg","http://togotv.dbcls.jp/movie/090806gotcc.mov","http://doi.org/10.7875/togotv.2009.074","http://togotv.dbcls.jp/images/20090806_0.jpg","090806gotcc.mov","thumbnail/20090806_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"198","","togotv.2009.073","","20090725","EMBOSS geeceeを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、geeceeについて紹介しています。 geeceeを使うと、入力した塩基配列のGC含量を計算することができます。 今回はサンプル配列としてヒトの脂肪代謝遺伝子peroxisome proliferator-activated receptor(PPAR) gammaの塩基配列のGC含量を計算する場合を例に説明しています。","EMBOSS,塩基配列,配列解析","http://youtu.be/CAR1OctmURI","http://togotv.dbcls.jp/movie/090725geecee.mov","http://doi.org/10.7875/togotv.2009.073","http://togotv.dbcls.jp/images/20090725_0.jpg","090725geecee.mov","thumbnail/20090725_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"197","","togotv.2009.072","","20090724","EMBOSS prettyseqを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、prettyseqについて紹介しています。prettyseqを使うと、入力した塩基配列をアミノ酸配列に翻訳することができます。 今回はサンプル配列としてヒトの脂肪代謝遺伝子peroxisome proliferator-activated receptor(PPAR) gammaの塩基配列をアミノ酸配列に翻訳する場合を例に説明しています。","EMBOSS,塩基配列,配列解析,アミノ酸","http://youtu.be/HGYahIE50tc","http://togotv.dbcls.jp/movie/090724prettyseq.mov","http://doi.org/10.7875/togotv.2009.072","http://togotv.dbcls.jp/images/20090724_0.jpg","090724prettyseq.mov","thumbnail/20090724_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"196","","togotv.2009.071","","20090723","OMIMを使い倒す 家族性乳がんの関連遺伝子をさぐる","今回は、ヒトの乳がんの約5パーセントを占める、遺伝的要素の強い家族性乳がんを例に、ヒトの遺伝性疾患データベースであるOMIM(Online Mendelian Inheritance in Man)の使い方をご紹介します。家族性乳がんのリスク因子として、がん抑制遺伝子である BRCA1/2 遺伝子の変異が知られています。2009年現在保険診療には含まれていませんが、この変異を持っていると、持っていない場合より遺伝性の乳がんを発症する可能性が高まりますが,変異があれば必ず乳がんになる訳ではなく、遺伝性を疑われる乳がんを発症した人全てでこの変異が見つかる訳でもありません。ところで、乳がんの発症に関与する他の遺伝子や、他に BRCA1/2 遺伝子が関与している疾患はないのでしょうか。それらをデータベースを用いて知る一つの方法は,例えば、ある疾患のページでどのような遺伝子が引用されているかを見ていく事です。Molecular Genetics という項目をつぶさに眺めれば、それらの関係を読み取る事ができるでしょう。あるいは、疾患のページからClinical Synopsisというページで概略を掴む事もできます。また、大まかな傾向を掴みたいだけなら、もう一つの方法もあります。OMIMデータベースには大きく分けて疾患の情報と、その原因やリスク因子である遺伝子の情報の二種類が収録されていますが、この二つはID番号の違いや、検索オプションを用いると、疾患の情報と遺伝子の情報とに分けられます。つまり、疾患について言及している遺伝子や、遺伝子について言及している疾患のページを一覧できるのです。特定の遺伝子について興味があるが、その遺伝子がどのような疾患や表現型に関与しているかを知りたい場合に、この機能が役に立つかもしれません。 ","疾患情報,データベース","http://youtu.be/C348W1v0HrY","http://togotv.dbcls.jp/movie/090723OMIM.mov","http://doi.org/10.7875/togotv.2009.071","http://togotv.dbcls.jp/images/20090723_0.jpg","090723OMIM.mov","thumbnail/20090723_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"195","","togotv.2009.070","","20090722","Gene Ontologyを使って特定遺伝子の機能情報を検索する","Gene Ontologyとは、遺伝子の機能の記述に関して、生物学分野における共通語彙の作成を目指した用例辞書の一つです。Gene Ontologyの特徴として、定義された用語はbioogical process(生物学的プロセス) cellular component(細胞の構成要素) molecular function(分子機能)の3つのカテゴリーに分類されます。そして、個々の用語はDAG(無閉路有向グラフ)という階層構造として意味的な包含関係を表す形で関連づけられています。ここでは、ヒトのHomeoboxタンパク質であるnanogを例にとって、その機能情報を検索しています。","遺伝子,発現解析,タンパク質,辞書","http://youtu.be/Xa1jDbxs3Ow","http://togotv.dbcls.jp/movie/090722go.mov","http://doi.org/10.7875/togotv.2009.070","http://togotv.dbcls.jp/images/20090722_0.jpg","090722go.mov","thumbnail/20090722_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"194","","togotv.2009.069","","20090721","鎌状赤血球症を引き起こす変異ヒトヘモグロビンをJmolで確認する","鎌状赤血球症(Sickle-cell disease)は、赤血球の形状が鎌状になって酸素運搬機能が低下することにより発生する、遺伝性の貧血症です。
以前の統合TV 「HapMapを使い倒す 鎌状赤血球のSNPをさぐる」では、HapMapの使い方を解説する例として、鎌状赤血球症を引き起こすSNP(Single Nucleotide
Polymorphism)の位置を特定しました。
今回は、SNPによるアミノ酸の違いを確認します。PDBに登録された正常型、変異型双方のタンパク質構造を比較し、変異したアミノ酸をJmolを用いて実際に確認します。","多型,可視化,タンパク質,構造解析","http://youtu.be/DRYyUBMDcn0","http://togotv.dbcls.jp/movie/090721SNP2Protein.mov","http://doi.org/10.7875/togotv.2009.069","http://togotv.dbcls.jp/images/20090721_0.jpg","090721SNP2Protein.mov","thumbnail/20090721_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"193","","togotv.2009.068","","20090719","Allen Brain Atlasを使い倒す〜応用編〜","The Allen Mouse Brain Atlasとは米国シアトルのAllen脳科学研究所が提供する、マウス脳を網羅する21000個以上の遺伝子発現を詳細に示した三次元マップを構築するためのデータベースです。マウス脳を数十万個の切片にし、in situ hybridizationを行い、すべての遺伝子の発現パターンを細胞レベルまで示しています。今回は三次元マップを構築する方法と、一度に複数のデータを見る方法を紹介します。","可視化,発現解析,遺伝子,データベース","http://youtu.be/0m_q45iGx7A","http://togotv.dbcls.jp/movie/090719BA2.mov","http://doi.org/10.7875/togotv.2009.068","http://togotv.dbcls.jp/images/20090719_0.jpg","090719BA2.mov","thumbnail/20090719_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"192","","togotv.2009.067","","20090718","Allen Brain Atlasを使い倒す 〜基本編〜","The Allen Mouse Brain Atlasとは、米国シアトルのAllen脳科学研究所が提供する、マウス脳を網羅する21000個以上の遺伝子発現を詳細に示した三次元マップを構築するためのデータベースです。マウス脳を数十万個の切片にし、in situ hybridizationを行い、すべての遺伝子の発現パターンを細胞レベルまで示しています。今回は、その基本的な検索、操作方法について説明します。","可視化,発現解析,遺伝子,データベース","http://youtu.be/lnEjNMwGte0","http://togotv.dbcls.jp/movie/090718BA1.mov","http://doi.org/10.7875/togotv.2009.067","http://togotv.dbcls.jp/images/20090718_0.jpg","090718BA1.mov","thumbnail/20090718_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"191","","togotv.2009.066","","20090717","Trace Archiveを使い倒す","Trace Archiveは大規模配列決定プロジェクトに由来する DNA sequence chromatogram (trace), 塩基判定 (base call), 品質評価 (quality estimate)のアーカイブです。これにより、まだゲノム配列の決まっていないような生物種の断片的な配列を検索することができます。今回の統合TVでは、例としてヒトの熱ショック転写因子を問い合わせ配列として、ブタ(Sus scrofa)の配列検索を行う方法を紹介しています。","塩基配列,配列解析,遺伝子,NCBI","http://youtu.be/Dr9KvczuQJw","http://togotv.dbcls.jp/movie/090717traceArchive.mov","http://doi.org/10.7875/togotv.2009.066","http://togotv.dbcls.jp/images/20090717_0.jpg","090717traceArchive.mov","thumbnail/20090717_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"190","","togotv.2009.065","","20090708","NCBI BLASTを使って類似配列を検索する","NCBI BLASTは、問い合わせ配列に類似した配列をデータベース中から検索するツールです。BLASTの名称はBasic Local Alignment Search Toolの頭文字に由来しており、配列解析には欠かせない基本的なツールとなっています。ここでは、ヒトのheat shock factorのアミノ酸配列を用いて、Environmental samples(環境DNA)に対して検索を行い、類似した配列を検索しています。環境DNAとは、土壌や海洋などの環境中に生息する微生物から抽出したDNAのことです。今回はヒトのheat shock factorの類似配列をその環境DNAのデータベースで検索したのですが、左の画像にあるように環境中の微生物にもN末端に近い部分に同様の配列が認められました。このことから、この部分に何らかの機能が存在する、ということが推測されます。","NCBI,塩基配列,配列解析","http://youtu.be/31kL7WKTSc8","http://togotv.dbcls.jp/movie/090708blast.mov","http://doi.org/10.7875/togotv.2009.065","http://togotv.dbcls.jp/images/20090708_0.jpg","090708blast.mov","thumbnail/20090708_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"189","","togotv.2009.064","","20090707","PyMOLを使い倒す","PyMOLは、Pythonで書かれたオープンソースの分子ビューアです。PyMOLのインストールから基本的な使い方までは、「PyMOLの使い方(基本編)」をご覧下さい。今回は「PyMOLの使い方(応用編)」として、タンパク質の中から条件に合う原子を選択する方法、原子間の距離や角度・二面角を測る方法、アミノ酸を置換する方法を説明します。サリンは殺傷能力が非常に高い神経ガスの一種です。その作用機構は、アセチルコリンエステラーゼ(AChE)の活性部位にサリンが不可逆的に結合し、結果として神経伝達物質であるアセチルコリンの分解を阻害して、神経を麻痺させるというものです。今回例として用いている2WHPは、アセチルコリンエステラーゼの活性部位(Ser203)にサリン分子が結合したものです。このタンパク質内部のサリンに着目しながら、様々な方法で見て行きます。","タンパク質,可視化,構造解析,ソフトウェア","http://youtu.be/CHDV40iPOmM","http://togotv.dbcls.jp/movie/090707PyMOL2.mov","http://doi.org/10.7875/togotv.2009.064","http://togotv.dbcls.jp/images/20090707_0.jpg","090707PyMOL2.mov","thumbnail/20090707_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"188","","togotv.2009.063","","20090630","Entrez SNP を使い倒す(後編)下戸遺伝子の多型をさぐる","今回は下戸遺伝子(Asian Blush)として知られるALDH2の点突然変異を例に、Entrez SNP(dbSNP)の使い方をご紹介します。
エタノール(エチルアルコール)の代謝産物であるアセトアルデヒドをさらに分解する、アセトアルデヒドデヒドロゲナーゼという酵素をコードしているのが、ヒトでは12番染色体に存在するALDH2遺伝子です。この遺伝子は一塩基多型(SNP)が酵素活性の顕著な違いを生む例としても有名です。ALDH2の多型はGG,
AG,
AAの3タイプがあり、AGタイプはいわゆる酒に弱く、AAのタイプの人は全く酒を飲む事ができません。欧米人はほとんどがGGタイプであるのに対し、アジア人ではAG,AAタイプの割合が高いことが知られています。
このALDH2の多型を判定できるキットは多数存在し、高校・大学等の学生実習や市民向け実験講座等でひろく使用され、遺伝子多型による個人差の例を検出できる優れた実験として確立されています。
ですが、判定結果だけではなく「実際にどのSNPの多型を見ているのか」が知りたい場合、どのように検索を行えばよいのでしょうか。
ひとつの方法は、あらかじめ知っているSNPの情報(ミスセンス変異であること、A/G多型である事など)をLimits機能で使用し絞り込む事です。動画の前半ではこの方法で多型にたどり着ける事をお見せします。しかし、ある遺伝子内でどのような多型が重要であるか、他にどんな多型が重要であるかを概観したい場合は、この方法は視覚的に優れているとはいえません。そこで便利なのが、動画の後半でご紹介するGeneViewという機能です。
Entrez SNP:Geneview
では、遺伝子領域内のSNPリストを一覧表示する事で,「翻訳後のタンパクで何番目のアミノ酸が変異しているか」「どんな塩基が何に置換されるか」「PubMed/OMIMへ引用されているか」などの情報を手がかりに、目的とする多型を探し出すことができるのです。","NCBI,多型,遺伝子","http://youtu.be/_07Mak3bvno","http://togotv.dbcls.jp/movie/090630EntrezSNP2.mov","http://doi.org/10.7875/togotv.2009.063","http://togotv.dbcls.jp/images/20090630_0.jpg","090630EntrezSNP2.mov","thumbnail/20090630_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"187","","togotv.2009.062","","20090627","PubMedの検索結果を定点観測する その2","PubMed(「パブメド」と発音します)は、米国のNCBIから提供されている生物医学文献データベースです。 2009年6月20日放送の「PubMedの検索結果を定点観測する その1」の続編として、webブラウザ Firefoxを使った場合のRSSフィードの取得・購読の仕方について説明しています。","NCBI,文献検索,環境設定","http://youtu.be/VdN27Nu-Tp4","http://togotv.dbcls.jp/movie/090627pubmed.mov","http://doi.org/10.7875/togotv.2009.062","http://togotv.dbcls.jp/images/20090627_0.jpg","090627pubmed.mov","thumbnail/20090627_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"186","","togotv.2009.061","","20090626","WolframAlphaを使い倒す","WolframAlphaは、ウルフラム・リサーチが開発した質問応答システムです。 ユーザがテキストフィールドに質問や計算リクエスト、キーワードなどを入力すると、構造化されたデータを使って計算、検索し、直接答えを返してくれる便利なオンラインサービスとして注目されてきています。ここではWolframAlphaの基本的な使い方、そして遺伝子名、塩基配列、染色体番号をキーワードとして入力したときの返答結果を紹介しています。","塩基配列,遺伝子,データベース","http://youtu.be/gZq9ZFBDemI","http://togotv.dbcls.jp/movie/090626wolframalpha.mov","http://doi.org/10.7875/togotv.2009.061","http://togotv.dbcls.jp/images/20090626_0.jpg","090626wolframalpha.mov","thumbnail/20090626_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"185","","togotv.2009.060","","20090625","NCBIの構造ツールを使いこなす","NCBI Structure Groupのページから、NCBIの提供するタンパク質立体構造関連のツールが利用できます。 これらのツール群は大きく分けてMMDB(Molecular Modelling DataBase)、PubVast(Vector Alignment Search Tool)、PubChem、CDD(Conserved Domain Database)、BioSystemsの5つであり、相互に連携しています。今回の統合TVでは、ドーパミンD1受容体(Dopamine receptor D1)を例に、NCBI構造系ツール群の使い方を解説します。","NCBI,タンパク質,構造解析","http://youtu.be/Za6syTpQ52w","http://togotv.dbcls.jp/movie/090625NCBIStructure.mov","http://doi.org/10.7875/togotv.2009.060","http://togotv.dbcls.jp/images/20090625_0.jpg","090625NCBIStructure.mov","thumbnail/20090625_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"184","","togotv.2009.059","","20090624","Entrezを使って配列を検索する ~ヒトのheat shock factorのアミノ酸配列を得る~","Entrezは、NCBIで提供されているさまざまなデータベースを横断的に検索するための検索エンジンです。 ここでは、ヒトのheat shock factorのアミノ酸配列を取得する方法を通じて、Entrezの使い方の一例を示します。","NCBI,配列解析,アミノ酸","http://youtu.be/NH0R3z5L-1E","http://togotv.dbcls.jp/movie/090624entrez.mov","http://doi.org/10.7875/togotv.2009.059","http://togotv.dbcls.jp/images/20090624_0.jpg","090624entrez.mov","thumbnail/20090624_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"183","","togotv.2009.058","","20090622","Entrez SNP を使い倒す(前編)PubMed/OMIMへの扉をひらく","Entrez SNP(dbSNP)は、1〜数塩基の置換、挿入/欠失や反復等の多型情報からなるデータベースです。前編となる今回は、基本的な検索例とPubMed・OMIMとの連携にスポットを当ててご紹介します。生物医学文献データベースであるPubMedと、ヒトの遺伝性疾患データベースであるOMIMはともにNCBIにより管理されているEntrezデータベース群の一部であり、一部の文献情報や疾患・疾患関連遺伝子の情報はEntrez SNPの多型データからリンクされています。","NCBI,多型,遺伝子","http://youtu.be/5QZXlL5c-xs","http://togotv.dbcls.jp/movie/090622EntrezSNP1.mov","http://doi.org/10.7875/togotv.2009.058","http://togotv.dbcls.jp/images/20090622_0.jpg","090622EntrezSNP1.mov","thumbnail/20090622_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"182","","togotv.2009.057","","20090620","PubMedの検索結果を定点観測する その1","PubMed(「パブメド」と発音します)は、米国のNCBIから提供されている生物医学文献データベースです。PubMedで自分の興味あるキーワード等を検索し、関係のありそうな論文の情報収集を日々行っているという人も多いと思います。ここではPubmedの検索結果のRSSフィードを取得し、新着情報のみをすばやく、効率的に得る方法について説明します。","NCBI,文献検索,環境設定,情報収集","http://youtu.be/DVt9To0IUBw","http://togotv.dbcls.jp/movie/090620pubmed.mov","http://doi.org/10.7875/togotv.2009.057","http://togotv.dbcls.jp/images/20090620_0.jpg","090620pubmed.mov","thumbnail/20090620_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"181","","togotv.2009.056","","20090619","高速アラインメントツールBLATをプライマー設計支援ツールとして使い倒す2009","BLAT(The BLAST-like Alignment Tool)は米国カリフォルニア大学サンタクルーズ校(UCSC)にて開発された高速なアラインメントツールで、主に質問配列がゲノム配列中のどの部分にヒットするか(ゲノムランディング(genome landing)といいます)探索するのに用いられています。ここではヒトの脂肪代謝遺伝子peroxisome proliferator-activated receptor (PPAR) gammaの塩基配列をサンプル配列として、BLATをプライマー設計支援ツールとして使い倒す方法を紹介します。ちなみに今回紹介するのに使っているURLhttp://genome.brc.mcw.edu/cgi-bin/hgBlat はUCSC Genome Browserのミラーサイトの一つで Medical College of Wisconsin, Milwaukee, WIのURLで、本家は http://genome.ucsc.edu/cgi-bin/hgBlatになります。","ウェブツール,ゲノム,塩基配列,配列解析,UCSC,アラインメント","http://youtu.be/YbnAM_J6Oos","http://togotv.dbcls.jp/movie/090619blat.mov","http://doi.org/10.7875/togotv.2009.056","http://togotv.dbcls.jp/images/20090619_0.jpg","090619blat.mov","thumbnail/20090619_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"180","","togotv.2009.055","","20090618","統計解析ソフト「R」の使い方 〜導入編〜","R(The R Project)は、フリーウェアでオープンソースのデータ解析環境です。Rはデータの操作や計算、可視化のためのソフトが統合されたもので、それらのサンプルデータが豊富に用意されていることやそれらを対話的に実行できることが特徴です。また、Windows, MacOSX, UNIXとマルチプラットホームで動作します。 近年、生命科学分野のためのRパッケージプロジェクトである『BioConductor』が立ち上がり、多くの関連パッケージが配布されており、マイクロアレイデータなどの遺伝子発現プロファイルや質量分析データ、タンパク質相互作用データなどを解析するうえで、欠かせないものとなりつつあります。 今回はその導入編として、RとBioConductorのインストール方法について紹介しています。 BioConductorのインストールはRを起動してから、下記のコマンドを実行します。実際に使うときはここからコピー&ペーストするとスペルミスもなく便利でしょう。source(""http://www.bioconductor.org/biocLite.R""); biocLite()
","環境設定,R,Bioconductor,プログラミング,UNIX","http://youtu.be/xLZnDo9xE2g","http://togotv.dbcls.jp/movie/090618r_introduction_macosx.mov","http://doi.org/10.7875/togotv.2009.055","http://togotv.dbcls.jp/images/20090618_0.jpg","090618r_introduction_macosx.mov","thumbnail/20090618_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"179","","togotv.2009.054","","20090617","PyMOLを使ってタンパク質の構造を見る","PyMOLは、Pythonで書かれたオープンソースの分子ビューアです。Ver.1.0以降コンパイル済みのバイナリは有料化されていますが、自分でソースコードからコンパイルするか、教職員もしくは学生として登録すれば無料で利用できます。今回は、PyMOLの使い方(基本編)とMacへのインストール方法を解説しています。応用編のTVはこちらです。例として用いている3B7Eは、1918年に流行したスペイン風邪の原因となったH1N1型インフルエンザウイルスの増殖を助ける、ノイラミニダーゼ(NA: Neuraminidase) というタンパク質です。","タンパク質,可視化,構造解析,ソフトウェア","http://youtu.be/jlOH5zo2SGM","http://togotv.dbcls.jp/movie/090617PyMOL.mov","http://doi.org/10.7875/togotv.2009.054","http://togotv.dbcls.jp/images/20090617_0.jpg","090617PyMOL.mov","thumbnail/20090617_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"178","","togotv.2009.053","","20090613","GenePaintを使ってマウスの胚や脳における遺伝子発現の局在を調べる","GenePaintは、ドイツのマックス・プランク研究所が公開しているマウスの発生過程における遺伝子発現の局在をin situ hybridization(ISH)により調べた組織切片画像のデータベースです。登録されている切片画像はズームイン可能で、遺伝子によっては各部位における発現状況がランク付けされています。また、ある部位で特に強く発現している遺伝子や特徴的なパターンで発現している遺伝子のなどの条件で検索結果の絞込みを行うことも可能です。","遺伝子,可視化,発現解析,データベース","http://youtu.be/Q9EDaKPcZfc","http://togotv.dbcls.jp/movie/090613genepaint.mov","http://doi.org/10.7875/togotv.2009.053","http://togotv.dbcls.jp/images/20090613_0.jpg","090613genepaint.mov","thumbnail/20090613_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"177","","togotv.2009.052","","20090612","生命科学 学協会 カタログを使い倒す","DBCLSが統合ホームページで提供するサービスの一つとして生命科学 学協会 カタログがあります。ここでは、生命科学に関連した様々な学協会を検索し、簡単にそのカタログやホームページを閲覧することが出来ます。","DBCLS","http://youtu.be/8TzKj1GiDMM","http://togotv.dbcls.jp/movie/090612gakkyoukai.mov","http://doi.org/10.7875/togotv.2009.052","http://togotv.dbcls.jp/images/20090612_0.jpg","090612gakkyoukai.mov","thumbnail/20090612_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"176","","togotv.2009.051","","20090610","ライフサイエンス辞書をローカルに使い倒す MacOSX (Leopard) ことえり編","ライフサイエンス辞書(WebLSD)は、京都大学大学院薬学研究科の金子周司先生が開発されている生命科学向けの辞書サービスで、生命科学用語について総合的で新しい語彙を収録した英日対訳およびシソーラス情報を教育研究者および学生に提供し,ひいては我が国の生命科学の発展に寄与することを目的としています。このプロジェクトでは、広範な生命科学の学問領域で使われる専門用語,対訳,用法,各種の統計情報を分析,収集するとともに,実際に電子メディアで活用することのできる電子辞書やパソコンツールを開発し,そのほとんどを無償で配布しています。文章などを書いていて、生命科学分野の専門用語にからっきし弱いパソコンのかな漢字変換システムにイライラを覚えたことのある方は多いのではないのでしょうか?前回紹介したLSDプロジェクトで制作されている各種辞書はオンラインでの提供だけではなく、自分のパソコンにダウンロード・インストールして使える辞書も提供されています。今回は、MacOSX用かな漢字変換辞書を自分のマック(厳密にはことえり)に導入して、快適な生命科学用語変換ライフを送る方法について紹介します。","辞書,環境設定","http://youtu.be/z9NnSR60y_o","http://togotv.dbcls.jp/movie/090610LSDkotoeri.mov","http://doi.org/10.7875/togotv.2009.051","http://togotv.dbcls.jp/images/20090610_0.jpg","090610LSDkotoeri.mov","thumbnail/20090610_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"175","","togotv.2009.050","","20090604","InterProScanを使ってアミノ酸配列の特徴を検索する","InterProScanは、アミノ酸配列の特徴を複数のデータベースを対象にまとめて検索することによって、問い合わせた配列が属するタンパク質ファミリーやドメイン構成およびモチーフなどの特徴を効率的に推測することができるツールです。 興味のあるタンパク質の機能が未知であるとき、配列解析によって機能注釈を行いたいといった場面で、配列相同性検索と同様によく用いられるのがモチーフ・ドメイン検索です。InterProScanはそういった場面で用いられる最も代表的なツールです。ムービーではサンプルデータとして、ES細胞の分化多能性を支えるHomeoboxタンパク質であるNanogのアミノ酸配列を使って説明しています。","配列解析,アミノ酸,タンパク質,遺伝子,ウェブツール","http://youtu.be/Fh5DiY7h30k","http://togotv.dbcls.jp/movie/090604interproscan.mov","http://doi.org/10.7875/togotv.2009.050","http://togotv.dbcls.jp/images/20090604_0.jpg","090604interproscan.mov","thumbnail/20090604_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"174","","togotv.2009.049","","20090601","統合TV番組作成体制(2009年6月現在)","新たに手伝ってくれる方が増えましたので、紹介します(敬称略)。所属は全員、ライフサイエンス統合データベースセンター(DBCLS)です。","DBCLS","http://youtu.be/Fh5DiY7h30k","http://togotv.dbcls.jp/movie/090601credit.mov","http://doi.org/10.7875/togotv.2009.049","http://togotv.dbcls.jp/images/20090601_0.jpg","090601credit.mov","thumbnail/20090601_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"173","","togotv.2009.048","","20090530","統合ホームページへようこそ 2009","統合ホームページは文部科学省「統合データベースプロジェクト」のポータルサイトです。今回の番組では、統合ホームページを使いこなす上で知っておくと便利な特徴や小技などを初めての人でも分かるように紹介しています。","DBCLS","http://youtu.be/U5NNyEirO-I","http://togotv.dbcls.jp/movie/090530yokoso.mov","http://doi.org/10.7875/togotv.2009.048","http://togotv.dbcls.jp/images/20090530_0.jpg","090530yokoso.mov","thumbnail/20090530_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"172","","togotv.2009.047","","20090529","Reactomeを使い倒す3・PathFinder","Reactomeは、ヒトの生体中での反応やパスウェイを整備したデータベースです。ここに収録されている情報は、それぞれの分野の専門家が編集しているため、非常に信頼性の高いデータベースです。代謝パスウェイだけでなく、シグナル伝達や膜輸送、感染など様々なパスウェイが扱われています。DNAマイクロアレイやプロテオーム解析、メタボローム解析の結果を解釈する際に利用できます。今回は、2つの化合物間の最短パスウェイを知ることができる“PathFinder”というツールを紹介します。","可視化,発現解析,パスウェイ解析,化合物,メタボローム","http://youtu.be/TtJ6JueEDw0","http://togotv.dbcls.jp/movie/090529reactome3.mov","http://doi.org/10.7875/togotv.2009.047","http://togotv.dbcls.jp/images/20090529_0.jpg","090529reactome3.mov","thumbnail/20090529_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"171","","togotv.2009.046","","20090527","DBAliを使ってタンパク質の構造アラインメントを行う","DBAliは、PDBに登録されている立体構造を「MAMMOTH」によって比較した結果が格納されているデータベースです。 任意の二つのタンパク質がどの程度構造が似ているか調べたり、配列の相同性は低くても構造が似ているタンパク質を探したりすることができます。今回は、2004年に取られたウシロドプシン(Bovine Rhodopsin)の立体構造(PDBID:1GZM)を例として検索します。 ただし、2007年にPDBファイルのバージョンが変更されて以降は計算が行われていないため、2007年10月6日以降に登録された立体構造は検索対象外となっています。","タンパク質,構造解析,アラインメント,PDB","http://youtu.be/H3X09Ld6DnQ","http://togotv.dbcls.jp/movie/090527DBAli.mov","http://doi.org/10.7875/togotv.2009.046","http://togotv.dbcls.jp/images/20090527_0.jpg","090527DBAli.mov","thumbnail/20090527_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"170","","togotv.2009.045","","20090523","生命科学系データベースカタログを使い倒す 2009","生命科学系データベースカタログは、 ライフサイエンス統合データベースセンター(DBCLS)が提供する「データベースのデータベース」です。データベースが数多く存在する昨今、データベースをうまく使いこなすことが研究の進展を左右するといっても過言ではありません。しかし実際の利用者からは「必要なデータベースが見つからない」「何のデータベースがあるのか分からない」という声をよく聞きます。生命科学系データベースカタログでは、国内外のデータベースを目的や対象、生物種、提供機関別に分類し、それらの説明が日本語で書かれているのが特徴です。また個々のデータベースについて利用者がコメントをつけることもできます。","DBCLS","http://youtu.be/Pr981ajFJ9o","http://togotv.dbcls.jp/movie/090523catalogue.mov","http://doi.org/10.7875/togotv.2009.045","http://togotv.dbcls.jp/images/20090523_0.jpg","090523catalogue.mov","thumbnail/20090523_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"169","","togotv.2009.044","","20090522","ATTEDIIを使い倒す","ATTED-IIは、シロイヌナズナの遺伝子発現データを用いて、その機能や共発現遺伝子などを調べることができるデータベースです。今回の統合TVでは、ATTED-IIの検索機能の一つであるGene Tableを使って興味のある遺伝子の機能や細胞内局在予測部位を調べる方法を紹介しています。","遺伝子,発現解析,塩基配列,植物,データベース","http://youtu.be/5o6H0exI7ug","http://togotv.dbcls.jp/movie/090522Atted.mov","http://doi.org/10.7875/togotv.2009.044","http://togotv.dbcls.jp/images/20090522_0.jpg","090522Atted.mov","thumbnail/20090522_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"168","","togotv.2009.043","","20090519","COILSとPaircoil2を使ってコイルドコイル構造を予測する","COILSと Paircoil2は、アミノ酸配列からコイルドコイル構造の位置を予測するプログラムです。 コイルドコイル構造とは、二本以上のαヘリックスが組み合わさって形成されたタンパク質構造モチーフの一つで、7残基繰り返しの特徴的な周期配列を持ちます。今回は、酵母の転写活性化因子であるGCN4のアミノ酸配列を例として用い、COILSとPaircoil2を使った予測方法を解説します。","タンパク質,アミノ酸,構造解析","http://youtu.be/BRDbITxI104","http://togotv.dbcls.jp/movie/090519COILS.mov","http://doi.org/10.7875/togotv.2009.043","http://togotv.dbcls.jp/images/20090519_0.jpg","090519COILS.mov","thumbnail/20090519_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"167","","togotv.2009.042","","20090511","HapMapを使い倒す 鎌状赤血球のSNPをさぐる","国際HapMap計画は、ヒトの一塩基多型(SNP(Single Nucleotide Polymorphism)、スニップと発音します)のデータベースです。2003年にヒトゲノムが解読されましたが,これはモデルタイプにすぎず,実際には個々人は少しずつ違うゲノム配列を持っています。それらの差異の中で,よく見られるものが今回扱うSNPです。今回は、高校生物で学習する一塩基多型原因疾患である「鎌状赤血球症」を引き起こすSNPを実際につきとめることを目的としています。","遺伝子,多型,データベース","http://youtu.be/J3EX0nMUUvE","http://togotv.dbcls.jp/movie/090511HapMap.mov","http://doi.org/10.7875/togotv.2009.042","http://togotv.dbcls.jp/images/20090511_0.jpg","090511HapMap.mov","thumbnail/20090511_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"166","","togotv.2009.041","","20090508","Reactomeを使い倒す2・Reactomeへのマッピング","Reactomeは、ヒトの生体中での反応やパスウェイを整備したデータベースです。ここに収録されている情報は、それぞれの分野の専門家が編集しているため、非常に信頼性の高いデータベースです。代謝パスウェイだけでなく、シグナル伝達や膜輸送、感染など様々なパスウェイが扱われています。DNAマイクロアレイやプロテオーム解析、メタボローム解析の結果を解釈する際に利用できます。今回は、発現データなどの網羅的なデータから関連するパスウェイを抽出するSkyPainterというツールを紹介します。","可視化,発現解析,パスウェイ解析,化合物,メタボローム","http://youtu.be/QmdvlDbrqOA","http://togotv.dbcls.jp/movie/090508Reactome2.mov","http://doi.org/10.7875/togotv.2009.041","http://togotv.dbcls.jp/images/20090508_0.jpg","090508Reactome2.mov","thumbnail/20090508_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"165","","togotv.2009.040","","20090501","Human Protein Atlasを使って組織・細胞におけるタンパク質発現情報を調べる 2009","Human Protein Atlas(ヒューマンプロテインアトラスと読みます)は、スウェーデンの研究グループが提供しているヒトのタンパク質発現情報データベースです。さまざまなヒトの組織やガン細胞、細胞株におけるタンパク質の発現情報および局在を、特異的抗体を用いて得られた免疫組織化学染色写真をもとに調べることができます。2009年5月1日現在では6,103個の抗体および5,683,196枚の染色写真が閲覧可能です。また、蛍光抗体法による染色写真も充実しています。タンパク質の特異的抗体を用いた実験をする前に一度このデータベースで各組織・細胞株での発現状況や局在を調べてみたり、2008年10月14日に放送しましたBioGPSと比較してmRNAとタンパク質の発現状況の違いを調べたりすると興味深い知見が得られるかもしれません。","タンパク質,発現解析,データベース","http://youtu.be/h0T6BjmerBg","http://togotv.dbcls.jp/movie/090501proteinatlas2.mov","http://doi.org/10.7875/togotv.2009.040","http://togotv.dbcls.jp/images/20090501_0.jpg","090501proteinatlas2.mov","thumbnail/20090501_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"164","","togotv.2009.039","","20090428","RCSB PDBを使って立体構造の特集記事を読む","タンパク質の立体構造データベースであるRCSB PDB (Protein Data Bank)では、毎月一個の分子を取り上げた、 ""Molecule of the Month"" という特集記事がアップされています。 今回は、""Molecule of the Month""の読み方や、過去記事の閲覧方法を解説します。また、PSI (Protein Structure Initiative) やその他の特集記事も紹介します。","タンパク質,構造解析,PDB","http://youtu.be/KGC_F-rtPiw","http://togotv.dbcls.jp/movie/090428MoM.mov","http://doi.org/10.7875/togotv.2009.039","http://togotv.dbcls.jp/images/20090428_0.jpg","090428MoM.mov","thumbnail/20090428_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"163","","togotv.2009.038","","20090424","Reactomeを使い倒す1・基本編","Reactomeは、ヒトの生体中での反応やパスウェイを整備したデータベースです。ここに収録されている情報は、それぞれの分野の専門家が編集しているため、非常に信頼性の高いデータベースです。代謝パスウェイだけでなく、シグナル伝達や膜輸送、感染など様々なパスウェイが扱われています。DNAマイクロアレイやプロテオーム解析、メタボローム解析の結果を解釈する際に利用できます。今回は、Reactomeの基本的な使い方を紹介しています。","可視化,発現解析,パスウェイ解析,化合物,メタボローム","http://youtu.be/u6pSQ5cxgiQ","http://togotv.dbcls.jp/movie/090424reactome.mov","http://doi.org/10.7875/togotv.2009.038","http://togotv.dbcls.jp/images/20090424_0.jpg","090424reactome.mov","thumbnail/20090424_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"162","","togotv.2009.037","","20090422","RCSB PDBを使ってタンパク質の立体構造を調べる","RCSB PDB (Protein Data Bank)は、タンパク質の立体構造データベースです。立体構造のデータは、タンパク質を構成する原子の座標データとして保存されています。今回は、オプシンを例として「タンパク質の立体構造を調べる」という基本的な利用方法を解説するほか、PDBファイルをダウンロードせずに内容を参照したり、ブラウザ上で構造を確認する方法を解説します。PDB IDやキーワード以外にもAuthor・タンパク質の分類・分子機能など様々な条件から構造を検索することが可能です。","PDB,タンパク質,構造解析","http://youtu.be/m1Ggcvzi6g4","http://togotv.dbcls.jp/movie/090422RCSBPDB.mov","http://doi.org/10.7875/togotv.2009.037","http://togotv.dbcls.jp/images/20090422_0.jpg","090422RCSBPDB.mov","thumbnail/20090422_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"161","","togotv.2009.036","","20090417","ArrayExpressを使い倒す 2","ArrayExpressはEuropean Bioinformatics Institute (EBI)が提供・維持管理している遺伝子発現情報のデータベースです。ArrayExpressは、以前紹介したNCBI GEOと双璧をなすデータベースで、主にマイクロアレイ実験で得られたデータが2009年4月8日現在、7,886実験分(233,221枚のマイクロアレイ)のデータが蓄積されています。それらの中から、自分の興味のある発現データセットや遺伝子プロファイルを検索することができるだけでなく、それらの生データを自由にダウンロードすることが可能です。今回は、Atlas of Gene Expressionを使って、様々な実験条件における興味のある遺伝子の発現状況の高低を、グラフや色の濃淡で表示することにより、分かりやすく閲覧できる方法を紹介しています。例として、筋分化決定因子である""myogenic differentiation 1(myod)""の遺伝子発現状況を検索しました。","遺伝子,発現解析,EBI,データベース","http://youtu.be/9-7w3KvTctA","http://togotv.dbcls.jp/movie/090417Arrayatlas.mov","http://doi.org/10.7875/togotv.2009.036","http://togotv.dbcls.jp/images/20090417_0.jpg","090417Arrayatlas.mov","thumbnail/20090417_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"160","","togotv.2009.035","","20090415","Jpredを使ってタンパク質の二次構造予測をする2009","Jpredは、複数の相補的な二次構造予測の結果を統合して、それにマルチプルアラインメントの情報を追加することで二次構造予測を行うことができるツールで、英国のDundee大学が提供しています。このツールの特徴として、二次構造予測を行う前に質問配列と相同な配列を持つタンパク質が立体構造データベースにすでに存在するかを調べることが可能で、Jpredを使って二次構造予測をする必要があるかを前もって知ることができます。また、二次構造予測結果はJavaによるマルチプルアラインメントエディター/ビューワーとして有名なJalviewで表示することもできます。今回は、ロドプシンのアミノ酸配列を使って説明しています。","タンパク質,構造解析,アラインメント","http://youtu.be/MUXLae-qBLU","http://togotv.dbcls.jp/movie/090415Jpred.mov","http://doi.org/10.7875/togotv.2009.035","http://togotv.dbcls.jp/images/20090415_0.jpg","090415Jpred.mov","thumbnail/20090415_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"159","","togotv.2009.034","","20090408","ArrayExpressを使い倒す 1","ArrayExpressはEuropean Bioinformatics Institute (EBI)が提供・維持管理している遺伝子発現情報のデータベースです。ArrayExpressは、以前紹介したNCBI GEOと双璧をなすデータベースで、主にマイクロアレイ実験で得られたデータが2009年4月8日現在、7,886実験分(233,221枚のマイクロアレイ)のデータが蓄積されています。それらの中から、自分の興味のある発現データセットや遺伝子プロファイルを検索することができるだけでなく、それらの生データを自由にダウンロードすることが可能です。ArrayExpressにあるデータがNCBI GEOにある場合、それらへのリンクが張られていることも一つの特徴です。 今回は、まずArrayExpressの検索インターフェースを使って、自分の興味のあるマイクロアレイ実験データセットにたどり着く方法およびその生データのダウンロード方法について説明しています。","遺伝子,発現解析,EBI","http://youtu.be/A_gOZ-HL6Bk","http://togotv.dbcls.jp/movie/090408Arrayexpress.mov","http://doi.org/10.7875/togotv.2009.034","http://togotv.dbcls.jp/images/20090408_0.jpg","090408Arrayexpress.mov","thumbnail/20090408_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"158","","togotv.2009.033","","20090403","GOLD Genomes Online Databaseを使い倒す 2009","GOLDデータベースはゲノム塩基配列解読プロジェクトを集めたデータベースです。既に解読が終了したゲノムプロジェクトや、現在進行中のゲノムプロジェクトについて調べることができます。塩基配列や、発表された論文、解析を実施している機関などへのリンクがあります。","ゲノム,遺伝子,塩基配列,データベース","http://youtu.be/fJSeQn-5FCI","http://togotv.dbcls.jp/movie/090403gold.mov","http://doi.org/10.7875/togotv.2009.033","http://togotv.dbcls.jp/images/20090403_0.jpg","090403gold.mov","thumbnail/20090403_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"157","","togotv.2009.032","","20090401","オープン科学に望まれる制度とは?","2009年3月28日に日本農芸化学会2009年度大会(於:福岡国際会議場、マリンメッセ福岡)にて行われましたランチョンセミナー「データ共有が変える日本の生命科学」から、大久保公策 国立遺伝学研究所・ライフサイエンス統合データベースセンター 教授による「オープン科学に望まれる制度とは?」をお送りします。","講演,DBCLS","http://youtu.be/VbuI_w9N9mI","http://togotv.dbcls.jp/movie/090401nougei09_ko.mov","http://doi.org/10.7875/togotv.2009.032","http://togotv.dbcls.jp/images/20090401_0.jpg","090401nougei09_ko.mov","thumbnail/20090401_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"156","","togotv.2009.031","","20090331","今日から使える!情報検索 lifesciencedb.jp","2009年3月28日に日本農芸化学会2009年度大会(於:福岡国際会議場、マリンメッセ福岡)にて行われましたランチョンセミナー「データ共有が変える日本の生命科学」から、河野信 ライフサイエンス統合データベースセンター 特任研究員による「今日から使える!情報検索lifesciencedb.jp」です。","講演,DBCLS","http://youtu.be/KwZvDQeD1N0","http://togotv.dbcls.jp/movie/090331nougei09_sk2.mov","http://doi.org/10.7875/togotv.2009.031","http://togotv.dbcls.jp/images/20090331_0.jpg","090331nougei09_sk2.mov","thumbnail/20090331_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"155","","togotv.2009.030","","20090330","データ共有が変える日本の生命科学","2009年3月28日に日本農芸化学会2009年度大会(於:福岡国際会議場、マリンメッセ福岡にて行われましたランチョンセミナー「データ共有が変える日本の生命科学」を三部作でお送りします。第一弾の今回は、川本祥子 ライフサイエンス統合データベースセンター 特任准教授による「データ共有が変える日本の生命科学」です。","講演,DBCLS","http://youtu.be/RHi07MNlnfo","http://togotv.dbcls.jp/movie/090330nougei09_sk.mov","http://doi.org/10.7875/togotv.2009.030","http://togotv.dbcls.jp/images/20090330_0.jpg","090330nougei09_sk.mov","thumbnail/20090330_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"154","","togotv.2009.029","","20090328","植物ESTボディーマップを使い倒す","植物ESTボディーマップは植物の各臓器、組織における遺伝子の発現量をESTを使って推定したデータベースであり、動物のボディーマップBodyMap-Xs を補間するデータを提供しています。植物解剖用語の自動分類プログラムを用いて2772の植物ライブラリをカテゴリー分類し、カテゴリー別遺伝子別にINSDCに登録されているESTの数を数えた結果です。今回の統合TVでは、植物に対する相同性検索について紹介しています。例として、ヒトの遺伝性乳がんに関与しているといわれている遺伝子""BRCA2""のアミノ酸配列をクエリとして相同な遺伝子を持つ植物を検索し、さらにその詳細を見ています。","植物,遺伝子,発現解析,配列解析","http://youtu.be/4Wa9piPesAU","http://togotv.dbcls.jp/movie/090328plantBodymap.mov","http://doi.org/10.7875/togotv.2009.029","http://togotv.dbcls.jp/images/20090328_0.jpg","090328plantBodymap.mov","thumbnail/20090328_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"153","","togotv.2009.028","","20090327","biomartを使い倒す〜遺伝子の上流配列を取得する〜2009","biomartは、the Ontario Institute for Cancer Research (OiCR) と the European Bioinformatics Institute (EBI) が共同で開発しているクエリ指向型データ管理システムです。今回は、Ensemblのbiomartを用いて、全ての遺伝子の転写開始点から上流の配列1kbをマウスゲノムから抽出してFASTA形式で得る方法について説明しています。","データベース,ゲノム,遺伝子,塩基配列","http://youtu.be/k2e6n6voFWI","http://togotv.dbcls.jp/movie/090327biomart.mov","http://doi.org/10.7875/togotv.2009.028","http://togotv.dbcls.jp/images/20090327_0.jpg","090327biomart.mov","thumbnail/20090327_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"152","","togotv.2009.027","","20090319","統計解析ソフト「R」の使い方 〜正規化編〜","Rは、フリーウェアでオープンソースのデータ解析環境です。Rはデータの操作や計算、可視化のためのソフトが統合されたもので、それらのサンプルデータが豊富に用意されていることやそれらを対話的に実行できることが特徴です。また、Windows, MacOSX, Linux とマルチプラットホームで利用可能です。近年、生命科学分野のためのRパッケージプロジェクトである『BioConductor』が立ち上がり、多くの関連パッケージが配布されており、マイクロアレイデータなどの遺伝子発現プロファイルや質量分析データ、タンパク質相互作用データなどを解析するうえで、欠かせないものとなりつつあります。前回のインストール編に引き続き、今回は、Rを用いたマイクロアレイ解析の前処理として必須なデータの正規化の方法について紹介しています。サンプルとしたマイクロアレイデータは、皮膚の線維芽細胞からiPS細胞を作製したときのデータで、以前に統合TVで紹介したNCBI Gene Expression Omnibus (GEO)からマイクロアレイの生データをダウンロードする方法で取得したものを用いています。また、マイクロアレイデータの正規化手法はさまざまなものが知られていますが、今回は、RMA (robust multiarray average)とMAS5 (Affymetrix MicroArray Suite 5)を用いており、正規化したデータをそのままタブ区切りテキストファイルとして保存する方法を紹介しています。さらにMAS5に関してはPresent/Absentコールを同様に保存する方法も説明しています。","環境設定,R,Bioconductor,プログラミング","http://youtu.be/PGYzQp2dKbc","http://togotv.dbcls.jp/movie/090319Rrmamas5.mov","http://doi.org/10.7875/togotv.2009.027","http://togotv.dbcls.jp/images/20090319_0.jpg","090319Rrmamas5.mov","thumbnail/20090319_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"151","","togotv.2009.026","","20090314","ライフサイエンス辞書をローカルに使い倒す2009","ライフサイエンス辞書(WebLSD)は、 京都大学大学院薬学研究科の金子周司先生が開発されている生命科学向けの辞書サービスで、生命科学用語について総合的で新しい語彙を収録した英日対訳およびシソーラス情報を教育研究者および学生に提供し,ひいては我が国の生命科学の発展に寄与することを目的としています。このプロジェクトでは、広範な生命科学の学問領域で使われる専門用語,対訳,用法,各種の統計情報を分析,収集するとともに,実際に電子メディアで活用することのできる電子辞書やパソコンツールを開発し,そのほとんどを無償で配布しています。文章などを書いていて、生命科学分野の専門用語にからっきし弱いパソコンのかな漢字変換システムにイライラを覚えたことのある方は多いのではないのでしょうか?前回紹介したLSDプロジェクトで制作されている各種辞書はオンラインでの提供だけではなく、自分のパソコンにダウンロード・インストールして使える辞書も提供されています。今回は、Windows XP/Vista 用かな漢字変換辞書を自分のパソコンに導入して、快適な生命科学用語変換ライフを送る方法について紹介します。","辞書","http://youtu.be/DcZKXqRGxFM","http://togotv.dbcls.jp/movie/090314LSD3.mov","http://doi.org/10.7875/togotv.2009.026","http://togotv.dbcls.jp/images/20090314_0.jpg","090314LSD3.mov","thumbnail/20090314_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"150","","togotv.2009.025","","20090313","統計解析ソフト「R」の使い方 〜導入編〜","R(The R Project)は、フリーウェアでオープンソースのデータ解析環境です。Rはデータの操作や計算、可視化のためのソフトが統合されたもので、それらのサンプルデータが豊富に用意されていることやそれらを対話的に実行できることが特徴です。また、Windows, MacOSX, UNIXとマルチプラットホームで動作します。近年、生命科学分野のためのRパッケージプロジェクトである『BioConductor』が立ち上がり、多くの関連パッケージが配布されており、マイクロアレイデータなどの遺伝子発現プロファイルや質量分析データ、タンパク質相互作用データなどを解析するうえで、欠かせないものとなりつつあります。 今回はその導入編として、RとBioConductorのインストール方法について紹介しています。","環境設定,R,Bioconductor,プログラミング,UNIX","http://youtu.be/WaonG2hR_j8","http://togotv.dbcls.jp/movie/090313Rinstall.mov","http://doi.org/10.7875/togotv.2009.025","http://togotv.dbcls.jp/images/20090313_0.jpg","090313Rinstall.mov","thumbnail/20090313_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"149","","togotv.2009.024","","20090312","How to list the intersection of specific TFBS and upstream region of genes
using Galaxy","Galaxyis metaserver for integrative analysis of genomic data developed and maintained at Center for Comparative Genomics and Bioinformatics, Pennsylvania State University. Utilizing public Galaxy server at DBCLS, we will introduce how to list the intersection of specific TFBS(Transcription Factor Binding Sites) and upstream region of genes using Galaxy(This server now requires login to use, so for trial you may access to original main server). ","Galaxy,ゲノム,遺伝子,塩基配列,配列解析,English,ウェブツール","http://youtu.be/S5_H9yFfmmI","http://togotv.dbcls.jp/movie/090312galaxy1en.mov","http://doi.org/10.7875/togotv.2009.024","http://togotv.dbcls.jp/images/20090312_0.jpg","090312galaxy1en.mov","thumbnail/20090312_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"148","","togotv.2009.023","","20090310","Galaxyを使い倒す特定の転写因子予測結合領域と遺伝子上流領域の「交差点」をリストアップする","Galaxyは、Penn State University Center for Comparative Genomics and Bioinformaticsで開発されているゲノムデータの統合解析のためのメタサーバー(Metaserver for integrative analysis of genomic data)です。これを使うといろいろなことができますが、今回はDBCLSで公開予定のGalaxyサーバーを利用して、特定の転写因子予測結合領域と遺伝子上流領域の「交差点」をリストアップする方法を紹介しています(20090422追記:こちらのサーバーはログインを要求されるので、一時的に試す場合は本家のサーバーを利用するとよいでしょう)。具体的には、Galaxy のインターフェースから UCSC Table Browser(以前に統合TVでも「UCSC Table Browserを使い倒す」にて紹介)にアクセスして knownGeneという名で呼ばれているヒトの既知遺伝子のセットの上流200bpをまずリストアップします(データセット1とします)。その後に、転写因子p53の予測結合領域を同じくUCSC Table Browserからヒトのデータだけにフィルタして取得します(データセット2)。そして、そのデータセット1と2をGalaxy 中の Tools の Operate on Genomic Intervals の Intersect the intervals of two queries を用いてゲノム座標レベルで比較、1bpでも重なる「交差点」の領域がある場合に該当する予測結合領域をリストアップします(データセット3)。最後にデータセット3をワンクリックで UCSC Genome Browser にインポートして眺める、という一連の流れを説明しています。データセット1を作成するときに遺伝子コード領域そのまま、のゲノム座標ではなく、上流領域のゲノム座標を指定している点がキーポイントです。今回は上流200bpとかなり狭い領域を指定していますがこれは自由に変更出来ますし、今回例示したTP53以外の別の転写因子の予測結合領域をリストアップすることも(UCSC Table Browserから計算結果が提供されていれば)可能です。また重なり具合も自由に設定出来ます。","Galaxy,ゲノム,遺伝子,塩基配列,配列解析,転写因子,ウェブツール","http://youtu.be/BQdwGQYZ3yI","http://togotv.dbcls.jp/movie/090310galaxy1.mov","http://doi.org/10.7875/togotv.2009.023","http://togotv.dbcls.jp/images/20090310_0.jpg","090310galaxy1.mov","thumbnail/20090310_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"147","","togotv.2009.022","","20090307","NCBI GEOの使い方4 データセットブラウザをさらに使い倒す","NCBI GEOはNCBIが提供・維持管理している遺伝子発現情報のデータベースです。今回はGEOの使い方第4弾として、データセットブラウザ(Dataset browser)からダウンロードできるファイルの説明や、発現に有意な変化のある遺伝子を探すツール、各サンプルの発現量の分布を見るツールなどの説明をしています。","発現解析,NCBI,遺伝子,GEO","http://youtu.be/6caLQ-Sp8dE","http://togotv.dbcls.jp/movie/090307dataAnalysis.mov","http://doi.org/10.7875/togotv.2009.022","http://togotv.dbcls.jp/images/20090307_0.jpg","090307dataAnalysis.mov","thumbnail/20090307_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"146","","togotv.2009.021","","20090306","ライフサイエンス辞書を使い倒す2009〜その他のサービス編〜","ライフサイエンス辞書は、 京都大学大学院薬学研究科の金子周司先生が開発されている生命科学向けの辞書サービスで、生命科学用語について総合的で新しい語彙を収録した英日対訳およびシソーラス情報を教育研究者および学生に提供し,ひいては我が国の生命科学の発展に寄与することを目的としています。このプロジェクトでは、広範な生命科学の学問領域で使われる専門用語,対訳,用法,各種の統計情報を分析,収集するとともに,実際に電子メディアで活用することのできる電子辞書やパソコンツールを開発し,そのほとんどを無償で配布しています。今回紹介するサービスはオンデマンド英語教材とオンライン変換サービスの2つです。オンデマンド英語教材は生命科学(ライフサイエンス)関連の英文記事を、日本語の注釈つきで学習できるツールです。毎週記事の追加更新が行われています。大学院の入試など、生命科学系の英文をお探しの方にお勧めです。またオンライン変換サービスでは英文を入力するだけで、web上で専門用語の英和単語帳を作成したり、自作の英文のスペルチェックをすることも出来ます。","辞書,文献検索","http://youtu.be/bVpyBz5FMGA","http://togotv.dbcls.jp/movie/090306_LSD2.mov","http://doi.org/10.7875/togotv.2009.021","http://togotv.dbcls.jp/images/20090306_0.jpg","090306_LSD2.mov","thumbnail/20090306_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"145","","togotv.2009.020","","20090304","How to make probeID list for microarray using Biomart","Biomart has been query-oriented data management system developed and maintained by the Ontario Institute for Cancer Research (OiCR) and the European Bioinformatics Institute (EBI). We can submit various queries to retrieve lists of interest from Biomart. In this togotv, we will introduce how to make ID conversion list for microarray analysis on the BioMart Central Portal website as of 20090225. From all genes in mouse genome, genes which have corresponding entries in Affymetrix mouse430 2 GeneChip are considered for further analyses. Genes with Affymetrix GeneChip ID mentioned above are associated with Agilent ProbeID and RefSeq ID via Ensembl Gene ID. You can download the results in TSV (Tab Separated Value) format with GNU-zip(gzip) compression.","ゲノム,遺伝子,発現解析,塩基配列,English","http://youtu.be/WrFlau1tArc","http://togotv.dbcls.jp/movie/090304biomart090225en.mov","http://doi.org/10.7875/togotv.2009.020","http://togotv.dbcls.jp/images/20090304_0.jpg","090304biomart090225en.mov","thumbnail/20090304_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"144","","togotv.2009.019","","20090228","PDBjを使ってタンパク質の立体構造を調べる","PDBj(Protein Data Bank Japan:日本蛋白質構造データバンク)は、 大阪大学蛋白質研究所が運営する蛋白質・核酸・糖などの生体高分子の立体構造およびそれに関連する二次データのデータベースです。 PDBjは、JST-BIRDの支援を受け、米国RCSBおよび欧州EBIと協力して、国際的に統一化されたアーカイブとして運営されており、また様々な解析ツールを提供しているのが特徴です。 今回紹介するxPSSS(XML-based Protein Structure Search Service)はXMLに基づいたタンパク質構造検索サービスです。xPSSSでは様々な条件で検索することができますが、最も単純な検索はPDB IDまたはキーワードによる検索で、PDBjのトップページから直接検索することができます。","タンパク質,PDBj,データベース,PDB","http://youtu.be/gGhFBgpegQ0","http://togotv.dbcls.jp/movie/090228pdbjxpsss.mov","http://doi.org/10.7875/togotv.2009.019","http://togotv.dbcls.jp/images/20090228_0.jpg","090228pdbjxpsss.mov","thumbnail/20090228_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"143","","togotv.2009.018","","20090227","ライフサイエンス辞書を使い倒す2009〜オンライン辞書編〜","ライフサイエンス辞書は、 京都大学大学院薬学研究科の金子周司先生が開発されている生命科学向けの辞書サービスで、生命科学用語について総合的で新しい語彙を収録した英日対訳およびシソーラス情報を教育研究者および学生に提供し,ひいては我が国の生命科学の発展に寄与することを目的としています。このプロジェクトでは、広範な生命科学の学問領域で使われる専門用語,対訳,用法,各種の統計情報を分析,収集するとともに,実際に電子メディアで活用することのできる電子辞書やパソコンツールを開発し,そのほとんどを無償で配布しています。今回紹介するWebLSDオンライン辞書は、英和・和英検索が2009年1月1日に改訂され、 英語9.3万語,日本語10.5万語に拡張されています。また共起検索およびシソーラスも充実しています。これらの辞書は、学術論文の計量的な解析を行って作成した独自のデータに基づいており,その解析材料としてはPubMedで公開されている膨大な文献抄録の他,協力を得られた出版社,学会などから提供されたテキスト情報を用いられているのが最大の特徴です。","辞書,文献検索","http://youtu.be/ttsZxtqQESM","http://togotv.dbcls.jp/movie/090227LSD.mov","http://doi.org/10.7875/togotv.2009.018","http://togotv.dbcls.jp/images/20090227_0.jpg","090227LSD.mov","thumbnail/20090227_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"142","","togotv.2009.017","","20090226","NCBI Taxonomy Browserを使って、生物分類と配列情報を関連させて調べる","NCBI taxonomy databaseは生物分類に基づいて整理されたデータベースのブラウザです。様々な生物種の系統(lineage)が階層的に表示され、各々の階層における類縁の生物を調べることができます。また、それぞれの生物種におけるEntrez中の配列や論文などの情報を簡単に得ることができます。今回は、A型インフルエンザウイルス""H1N2""について検索してみました。","NCBI,ゲノム,タンパク質,データベース","http://youtu.be/QDxVUCHKOaE","http://togotv.dbcls.jp/movie/090226TaxoBrowser.mov","http://doi.org/10.7875/togotv.2009.017","http://togotv.dbcls.jp/images/20090226_0.jpg","090226TaxoBrowser.mov","thumbnail/20090226_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"141","","togotv.2009.016","","20090225","Biomartを使い倒すマイクロアレイprobeIDの対応表を作る","Biomartは、the Ontario Institute for Cancer Research (OiCR) と the European Bioinformatics Institute (EBI) が共同で開発しているクエリ指向型データ管理システムです。これを使うといろいろなことができますが、今回は以前にも紹介しましたIDの対応表を作成するやり方を2009年2月25日現在の最新のBiomartのウェブインターフェースで再度紹介しています。 具体的には、BioMart Central Portalを使って、Affymetrix mouse430 2のマイクロアレイにある遺伝子セットに絞り込んでから、Ensembl Gene IDを介して Agilent ProbeID とRefSeq ID とを対応づけた表を作成し、タブ区切りテキストにしてダウンロードする手順を紹介しています。その過程で結果に含めるカラム(列)を推敲するのがこのBiomartでは容易にできることも紹介しています。作成した表はAffymetrixとAgilentのマイクロアレイのプローブIDの対応表となります。","データベース,ゲノム,遺伝子,発現解析,塩基配列","http://youtu.be/G4w6ZIEBnF8","http://togotv.dbcls.jp/movie/090225biomart090225.mov","http://doi.org/10.7875/togotv.2009.016","http://togotv.dbcls.jp/images/20090225_0.jpg","090225biomart090225.mov","thumbnail/20090225_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"140","","togotv.2009.015","","20090224","自然言語処理技術の活用実例@AJACS長津田","本日の統合TVは、2009年1月23日に東京工業大学にて開催された「統合データベース講習会:AJACS長津田」から、統合データベースセンターの仲里猛留による「自然言語処理技術の活用実例」をお送りします。","実習, AJACS","http://youtu.be/wPwTih3egqE","http://togotv.dbcls.jp/movie/090224AJACS7_tn.mov","http://doi.org/10.7875/togotv.2009.015","http://togotv.dbcls.jp/images/20090224_0.jpg","090224AJACS7_tn.mov","thumbnail/20090224_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"139","","togotv.2009.014","","20090221","NCBI GEOの使い方3 データセットブラウザを使い倒す","NCBI GEOはNCBIが提供・維持管理している遺伝子発現情報のデータベースです。今回はGEOの使い方第3弾として、データセットブラウザ(Dataset browser)を利用して、一つの実験データセットにおける様々な遺伝子発現を詳細に調べる方法を紹介しています。データセットの検索、データセット内の遺伝子の検索、及びヒートマップツールの使い方などについて説明しています。","発現解析,NCBI,遺伝子,GEO","http://youtu.be/cAKMMSsW1hk","http://togotv.dbcls.jp/movie/090221DatasetBrowser.mov","http://doi.org/10.7875/togotv.2009.014","http://togotv.dbcls.jp/images/20090221_0.jpg","090221DatasetBrowser.mov","thumbnail/20090221_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"138","","togotv.2009.013","","20090220","Ensembl tips 〜塩基配列のアラインメントを作成する〜2009","Ensemblは、 The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。第三弾の今回は、Ensemblを使って遺伝子の塩基配列を生物種間で比較し、そのアラインメントを作成・閲覧する方法について紹介しています。以前の番組で紹介した CLUSTALWで配列のアラインメントを作成すると内容的には同じですが、CLUSTALWを用いる場合は比較する塩基配列を自分で用意しなければいけません。Ensemblではその手間が省けるほか、遺伝子のプロモーター配列が存在する上流配列などを付加した上で簡単にアラインメントを作成することができます。","Ensembl,遺伝子,塩基配列,配列解析,アラインメント","http://youtu.be/cAKMMSsW1hk","http://togotv.dbcls.jp/movie/090220DatasetBrowser.mov","http://doi.org/10.7875/togotv.2009.013","http://togotv.dbcls.jp/images/20090220_0.jpg","090220DatasetBrowser.mov","thumbnail/20090220_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"137","","togotv.2009.012","","20090219","生命科学横断検索の利用法@AJACS長津田","本日の統合TVは、2009年1月23日に東京工業大学にて開催された「統合データベース講習会:AJACS長津田」から、統合データベースセンターの川本祥子 特任准教授による「生命科学横断検索の利用法」をお送りします。データベース検索の基本的な仕組みの説明に始まり、様々な検索エンジンの紹介 [想-IMAGINE Book Search、clustermed、iHOP、SAGOOL、SPYSEE](13分〜)、よりよい検索のための工夫(20分〜)、文章の構造化について(24分〜)、ソーシャルブックマーク(31分〜)、横断検索(35分〜)が紹介されています。","実習, AJACS","http://youtu.be/inatoqCwZwY","http://togotv.dbcls.jp/movie/090219AJACS7_shoko.mov","http://doi.org/10.7875/togotv.2009.012","http://togotv.dbcls.jp/images/20090219_0.jpg","090219AJACS7_shoko.mov","thumbnail/20090219_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"136","","togotv.2009.011","","20090218","ヒト統合ボディーマップ 2.染色体領域で眺める、他","ヒト統合ボディーマップは、国立遺伝学研究所大久保研究室によるヒト遺伝子の解剖学的な発現パターンデータの統合サイトです。統合データベースプロジェクトの成果の一つ(平成18年度)で、統合ホームページの「H18年度成果公開サイト」から辿れます。5種類のヒト発現データ (iAFLP, Affymetrix GeneChip, EST, SAGE-NCBIのタグマップ, SAGE-大久保研独自タグマップ)に対して対応するNCBIのUniGene(ユニジーン)でデータを整理しました。対象生物種はヒトのみですが、複数の手法による客観的な遺伝子発現データの比較が可能です。前回「ヒト統合ボディーマップ1.発現パターンから探す」に引き続き、今回は「染色体領域で眺める」機能を使い倒す方法ほかを紹介しています。まず、統合ホームページの横断検索で「嚢胞性線維症」(「のうほうせいせんいしょう」と読みます)で検索し責任領域をOMIM(Online Mendelian Inheritance in Man; 「おーみむ」と読みます)のエントリから読み取り、その結果を利用してその領域のエントリを発現の高い順に表示する方法を紹介します。さらに、その中で一番発現の高い嚢胞性線維性膜貫通調節因子(CFTR)に関してその発現データの詳細をブラウズする方法を説明しています。","遺伝子,発現解析,可視化,DBCLS","http://youtu.be/mQPMWfim_5w","http://togotv.dbcls.jp/movie/090218bodymap_i2.mov","http://doi.org/10.7875/togotv.2009.011","http://togotv.dbcls.jp/images/20090218_0.jpg","090218bodymap_i2.mov","thumbnail/20090218_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"135","","togotv.2009.010","","20090217","遺伝子発現データの活用事例@AJACS長津田","本日の統合TVは、2009年1月23日に東京工業大学にて開催された「統合データベース講習会:AJACS長津田」から、統合TVのプロデューサー 小野浩雅による「遺伝子発現データの活用事例」をお送りします。前半部分は、統合TVについての説明、番組の検索方法などが紹介されています。後半部分が、ヒト、マウス、ラットのさまざまな組織や細胞(株)における遺伝子発現プロファイルのデータベース BioGPS の検索実習(11分〜)、マウスに関する遺伝子、ゲノム、生物学的な情報を提供する統合データベース MGI (Mouse Genome Informatics) の検索実習(20分〜)となっています。","実習, AJACS,発現解析,遺伝子,データベース,ウェブツール","http://youtu.be/pgwwcrEln_A","http://togotv.dbcls.jp/movie/090217AJACS7_hono.mov","http://doi.org/10.7875/togotv.2009.010","http://togotv.dbcls.jp/images/20090217_0.jpg","090217AJACS7_hono.mov","thumbnail/20090217_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"134","","togotv.2009.009","","20090213","NCBI GEOの使い方2 遺伝子プロファイルを検索する","NCBI GEOはNCBIが提供・維持管理している遺伝子発現情報のデータベースです。今回はGEOの使い方第2弾として、GEOに登録されている多くのマイクロアレイデータのなかから興味のある遺伝子のプロファイルを検索する方法、およびその実験データの正規化されたファイルの取得方法を紹介しています。","発現解析,遺伝子,NCBI,データベース,GEO","http://youtu.be/a84nemOOjvA","http://togotv.dbcls.jp/movie/090213geo.mov","http://doi.org/10.7875/togotv.2009.009","http://togotv.dbcls.jp/images/20090213_0.jpg","090213geo.mov","thumbnail/20090213_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"133","","togotv.2009.008","","20090210","BodymapXSを使い倒す","Bodymap-XS(ボディーマップエックスエスもしくはボディーマップクロススピーシーズ: 2014年6月現在サービス終了しています。関連する後継サービスとしてRefExがあります。)は、国立遺伝学研究所大久保研究室による分類学と解剖学による動物のESTカウント数データの統合サイト(taxonomical and anatomical breakdown of latest animal EST data)です。NCBI UniGeneユニジーン)の目次のようなサービスですが、分類学的指標としてはNCBI Homologene(ホモロジーン)ではなくInparanoid(インパラノイド)データベースから取得したオーソログデータ(Eukaryotic Ortholog Groups)を利用し、独自に構築した階層的な解剖学的分類によってデータが整理されています。遺伝子発現データとしてEST配列データのみが使われていますが、複数の生物種(動物)のカウンターパート遺伝子の発現パターンの比較が可能となっています。 以前「ヒト統合ボディーマップ 1.発現パターンから探す」で取り上げたクレアチンキナーゼ(Creatine Kinase、略してCKとよく血液検査の結果などで呼称されます)を例として、さまざまな生物種のクレアチンキナーゼのオーソログのESTカウント数をその発現データとしてブラウズする方法を説明しています。さらに、配列類似性検索(BLASTP)を併用してオーソログと判定されなかったものの配列相同性のあると考えられるものも合わせてブラウズする方法も説明しています。","遺伝子,発現解析,配列解析,可視化","http://youtu.be/h9MzG7iFFoU","http://togotv.dbcls.jp/movie/090210bodymap-xs.mov","http://doi.org/10.7875/togotv.2009.008","http://togotv.dbcls.jp/images/20090210_0.jpg","090210bodymap-xs.mov","thumbnail/20090210_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"132","","togotv.2009.007","","20090206","Ensembl tips 〜配列を取得する〜 2009","Ensemblは、 The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。前回はEnsembl tipsの第一弾として配列の比較方法について紹介しましたが、今回はその第二弾としてEnsemblを使った「配列の取得」方法について紹介しています。塩基配列やcDNA配列、アミノ酸配列は研究の多くの場面で必要となりますが、今回紹介するちょっとした使い方を知るだけで自分の欲しい配列や領域をこれまで以上に簡単に取得することができるかもしれません。","ゲノム,遺伝子,アミノ酸,塩基配列,Ensembl","http://youtu.be/IwAPino40KQ","http://togotv.dbcls.jp/movie/090206en.mov","http://doi.org/10.7875/togotv.2009.007","http://togotv.dbcls.jp/images/20090206_0.jpg","090206en.mov","thumbnail/20090206_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"131","","togotv.2009.006","","20090205","アナトモグラフィー/BodyParts3Dの利用法@AJACS長津田","本日の統合TVは、2009年1月23日に東京工業大学にて開催された「統合データベース講習会:AJACS長津田」から、ライフサイエンス統合データベースセンター の誇る「メディカルアーティスト」 藤枝香による「アナトモグラフィー/BodyParts3Dの利用法」をお送りします。前半部分は、アナトモグラフィーとは?現在までの進捗状況、今後の開発予定などが紹介されています。後半部分で、アナトモグラフィーのエディターで画像を作成する(心臓を描く)実習(14分〜)、人体ヒートマップを作成する実習(20分〜)が紹介されています。","実習, AJACS,可視化","http://youtu.be/y17iNh29PMs","http://togotv.dbcls.jp/movie/090205AJACS7_queen.mov","http://doi.org/10.7875/togotv.2009.006","http://togotv.dbcls.jp/images/20090205_0.jpg","090205AJACS7_queen.mov","thumbnail/20090205_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"130","","togotv.2009.005","","20090204","ヒト統合ボディーマップ 1.発現パターンから探す","ヒト統合ボディーマップは、国立遺伝学研究所大久保研究室によるヒト遺伝子の解剖学的な発現パターンデータの統合サイトです。統合データベースプロジェクトの成果の一つ(平成18年度)で、統合ホームページの「H18年度成果公開サイト」から辿れます。5種類のヒト発現データ (iAFLP, Affymetrix GeneChip, EST, SAGE-NCBIのタグマップ, SAGE-大久保研独自タグマップ)に対して対応するNCBIのUniGene(ユニジーン)でデータを整理しました。対象生物種はヒトのみですが、複数の手法による客観的な遺伝子発現データの比較が可能です。 今回は「発現パターンから探す」機能を使って、全体のクラスタリング結果のヒートマップイメージから筋で特徴的に発現の高い遺伝子を視覚的に選んでリストを表示し(そしてそのリストを染色体上の位置でソートしてみたりもし)、その中で(ESTカウント数で)二番目に発現量が多かったクレアチンキナーゼ(Creatine Kinase、略してCKとよく血液検査の結果などで呼称されます)に関してその発現データの詳細をブラウズする方法を説明しています(一番目はミオシンでしたが、5種類の発現測定結果がそろっていなかったたので二番目のクレアチンキナーゼで説明しました)。","遺伝子,発現解析,可視化,DBCLS","http://youtu.be/xSeTy4FzbK4","http://togotv.dbcls.jp/movie/090204bodymap_i1.mov","http://doi.org/10.7875/togotv.2009.005","http://togotv.dbcls.jp/images/20090204_0.jpg","090204bodymap_i1.mov","thumbnail/20090204_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"129","","togotv.2009.004","","20090203","統合データベースプロジェクトとは?@AJACS長津田","本日の統合TVは、2009年1月23日に東京工業大学にて開催された「統合データベース講習会:AJACS長津田」から、ライフサイエンス統合データベースセンター 坊農秀雅 特任准教授による「統合データベースプロジェクトとは?」をお送りします。(プレゼン資料)センターができるまでの経緯やその目指すものについて熱く語られています。","実習, AJACS","http://youtu.be/srba7C6Tjj8","http://togotv.dbcls.jp/movie/090203AJACS7_bono.mov","http://doi.org/10.7875/togotv.2009.004","http://togotv.dbcls.jp/images/20090203_0.jpg","090203AJACS7_bono.mov","thumbnail/20090203_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"128","","togotv.2009.003","","20090131","Webブラウザを生命科学向けにカスタマイズする2009","何か検索したい時にWebブラウザの検索バーを使う人が多いのではないでしょうか?今回はIE7とFirefoxを例にして、この検索バーを少しカスタマイズするだけで、生命科学向けの検索がグッと簡単になる方法について説明します。(注・IE6およびFirefox
1.x系ではこのカスタマイズはできませんのでご注意ください。)","環境設定","http://youtu.be/LtvjISkskIc","http://togotv.dbcls.jp/movie/090131search_bar.mov","http://doi.org/10.7875/togotv.2009.003","http://togotv.dbcls.jp/images/20090131_0.jpg","090131search_bar.mov","thumbnail/20090131_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"127","","togotv.2009.002","","20090130","生物アイコンを使い倒す2009","DBCLSが統合ホームページで提供するサービスの一つとして生物アイコンがあります。ここでは、生命科学の分野でしばしば登場する生物の画像とその詳細情報が分類ごとに整理されています。ここに載っている生物の画像はクリエイティブ・コモンズ・ライセンスのもとで自由に使用することが可能です。","DBCLS","http://youtu.be/IsIOTXxLesc","http://togotv.dbcls.jp/movie/090130bioicon.mov","http://doi.org/10.7875/togotv.2009.002","http://togotv.dbcls.jp/images/20090130_0.jpg","090130bioicon.mov","thumbnail/20090130_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"126","","togotv.2009.001","","20090129","Ensemblゲノムブラウザを使って遺伝子を眺める2009","Ensembl では、ゲノム配列上の遺伝子や各種マーカー、SNPなどを眺めることができますある遺伝子がゲノム配列上の「どこ」にあって、その周辺に「何」があるのか調べることは、地図から目的の場所を調べるのと似ています。ここでは、ゲノムブラウザの使い方の一つ(ゲノムブラウザは色々な使い方ができます!)を、Googleマップと対比させて説明しています。","Ensembl,ゲノム,遺伝子","http://youtu.be/RgSC-mii7Q8","http://togotv.dbcls.jp/movie/090129ene.mov","http://doi.org/10.7875/togotv.2009.001","http://togotv.dbcls.jp/images/20090129_0.jpg","090129ene.mov","thumbnail/20090129_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"125","","togotv.2008.085","","20081228","Local blast の使い方〜オプションを使った検索編〜","本日の統合TVは、自分のコンピュータでBLAST検索を実行する方法を紹介します。
現在、さまざまなデータベースに対してウェブ経由でBLAST検索を実行できます。しかしながら、実行速度が遅かったり、大量に検索すると怒られたり、自分の望むデータベースがなかったりする場合があります。また、まだ公開していない配列データに対してBLAST検索を実行したい場合もあるかもしれません。そんなときには、自分のコンピュータにBLASTをインストールして、ローカルでBLAST検索を実行してしまいましょう!
今回は最終回、さまざまなオプションを使って検索結果をしぼったり、表示形式を変更したりする方法について紹介します。","環境設定,アミノ酸,塩基配列,配列解析","http://youtu.be/RuROmxp5wFA","http://togotv.dbcls.jp/movie/081228lblast_option.mov","http://doi.org/10.7875/togotv.2008.085","http://togotv.dbcls.jp/images/20081228_0.jpg","081228lblast_option.mov","thumbnail/20081228_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"124","","togotv.2008.084","","20081227","Local blast の使い方〜検索実行編〜","本日の統合TVは、自分のコンピュータでBLAST検索を実行する方法を紹介します。
現在、さまざまなデータベースに対してウェブ経由でBLAST検索を実行できます。しかしながら、実行速度が遅かったり、大量に検索すると怒られたり、自分の望むデータベースがなかったりする場合があります。また、まだ公開していない配列データに対してBLAST検索を実行したい場合もあるかもしれません。そんなときには、自分のコンピュータにBLASTをインストールして、ローカルでBLAST検索を実行してしまいましょう!
今回はその第四弾、いよいよBLAST検索を実行する方法について紹介します。前回作成した酵母のアミノ酸配列データベースに対して、サンプル配列と類似の配列を検索しています。","環境設定,アミノ酸,塩基配列,配列解析","http://youtu.be/AN-zs9xZnRs","http://togotv.dbcls.jp/movie/081227lblast_run.mov","http://doi.org/10.7875/togotv.2008.084","http://togotv.dbcls.jp/images/20081227_0.jpg","081227lblast_run.mov","thumbnail/20081227_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"123","","togotv.2008.083","","20081226","Local blast の使い方〜データベース準備編〜","本日の統合TVは、自分のコンピュータでBLAST検索を実行する方法を紹介します。
現在、さまざまなデータベースに対してウェブ経由でBLAST検索を実行できます。しかしながら、実行速度が遅かったり、大量に検索すると怒られたり、自分の望むデータベースがなかったりする場合があります。また、まだ公開していない配列データに対してBLAST検索を実行したい場合もあるかもしれません。そんなときには、自分のコンピュータにBLASTをインストールして、ローカルでBLAST検索を実行してしまいましょう!
今回はその第三弾、 BLAST検索用のデータベース作成方法について紹介します。BLASTでは検索を高速化するために formatdb
というコマンドを使って、マルチファスタの配列ファイルをBLAST専用のファイルに変換する必要があります。","環境設定,アミノ酸,塩基配列,配列解析","http://youtu.be/384ijyg-vRw","http://togotv.dbcls.jp/movie/081226lblast_db.mov","http://doi.org/10.7875/togotv.2008.083","http://togotv.dbcls.jp/images/20081226_0.jpg","081226lblast_db.mov","thumbnail/20081226_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"122","","togotv.2008.082","","20081225","Local blast の使い方〜設定編〜","本日の統合TVは、自分のコンピュータでBLAST検索を実行する方法を紹介します。
現在、さまざまなデータベースに対してウェブ経由でBLAST検索を実行できます。しかしながら、実行速度が遅かったり、大量に検索すると怒られたり、自分の望むデータベースがなかったりする場合があります。また、まだ公開していない配列データに対してBLAST検索を実行したい場合もあるかもしれません。そんなときには、自分のコンピュータにBLASTをインストールして、ローカルでBLAST検索を実行してしまいましょう!
今回はその第二弾、 BLASTプログラムを実行するにあたっての設定方法、1) マトリックスファイルの場所を指定する方法と、2)
BLASTプログラムにパスを通す(コンピュータ上のどこのディレクトリからでもプログラムを呼び出せるようにする)方法を紹介します。","環境設定,アミノ酸,塩基配列,配列解析","http://youtu.be/O2x3UBV9vEM","http://togotv.dbcls.jp/movie/081225lblast_setting.mov","http://doi.org/10.7875/togotv.2008.082","http://togotv.dbcls.jp/images/20081225_0.jpg","081225lblast_setting.mov","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"121","","togotv.2008.081","","20081224","Local blast の使い方〜ダウンロード編〜","本日の統合TVは、自分のコンピュータでBLAST検索を実行する方法を紹介します。
現在、さまざまなデータベースに対してウェブ経由でBLAST検索を実行できます。しかしながら、実行速度が遅かったり、大量に検索すると怒られたり、自分の望むデータベースがなかったりする場合があります。また、まだ公開していない配列データに対してBLAST検索を実行したい場合もあるかもしれません。そんなときには、自分のコンピュータにBLASTをインストールして、ローカルでBLAST検索を実行してしまいましょう!今回はその第一弾、
BLASTプログラムのインストール方法を紹介します。","環境設定,アミノ酸,塩基配列,配列解析","http://youtu.be/6DUlAQZ40Uc","http://togotv.dbcls.jp/movie/081224lblast_down.mov","http://doi.org/10.7875/togotv.2008.081","http://togotv.dbcls.jp/images/20081224_0.jpg","081224lblast_down.mov","thumbnail/20081224_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"120","","togotv.2008.080","","20081219","Functional profiling of OMIM data using MeSH vocabulary JSBi2008","2008年12月15日に大阪の千里ライフサイエンスセンターで行われた、JSBi2008から、大学共同利用機関法人 情報・システム研究機構 ライフサイエンス統合データベースセンター(DBCLS)の仲里猛留の発表、""Functional profiling of OMIM data using MeSH vocabulary""をお送りします。14分50秒です。","DBCLS,講演,English","http://youtu.be/3PmmbTrLR6Y","http://togotv.dbcls.jp/movie/081219JSBi2008.mov","http://doi.org/10.7875/togotv.2008.080","http://togotv.dbcls.jp/images/20081219_0.jpg","081219JSBi2008.mov","thumbnail/20081219_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"119","","togotv.2008.079","","20081218","遺伝子発現情報データベース NCBI Gene Expression Omnibus (GEO) の使い方","NCBI GEO(Gene Expression Omnibus; 「ジオ」あるいは「ゲオ」と発音します)はNCBIが提供・維持管理している遺伝子発現情報のデータベースです。GEOには、主にマイクロアレイ実験で得られたデータが日々蓄積されており、その登録データ数は世界最大です。それらの中から、自分の興味のある発現データセットや遺伝子プロファイルを検索することができるだけでなく、それらの生データを自由にダウンロードすることが可能です。今回は、まずGEOの検索インターフェースを使って、自分の興味のあるマイクロアレイ実験データセットにたどり着く方法およびその生データのダウンロード方法について説明しています。","発現解析,遺伝子,データベース,NCBI,GEO","http://youtu.be/WS5gDfG2Now","http://togotv.dbcls.jp/movie/081218GEO.mov","http://doi.org/10.7875/togotv.2008.079","http://togotv.dbcls.jp/images/20081218_0.jpg","081218GEO.mov","thumbnail/20081218_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"118","","togotv.2008.078","","20081211","tRNAデータベース『tRNADBCE』の使い方","tRNADB-CE』とは、3種類のtRNA遺伝子予測プログラムを用いて、広範な生物ゲノムからtRNA遺伝子の候補を網羅的に探索し、プログラム間で相異のあるケースについてはシニア世代の専門家がマニュアルにより精査した結果が収録されているtRNAデータベースです。","遺伝子,塩基配列,データベース","http://youtu.be/mKVBwaSOXKo","-","http://doi.org/10.7875/togotv.2008.078","http://togotv.dbcls.jp/images/20081211_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"117","","togotv.2008.077","","20081206","EMBOSS fuzznucを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、fuzznucについて紹介しています。 fuzznucを使うと、塩基配列、そしてその相補配列(complement)の中から、配列のパターンを検索することが出来ます。 今回はサンプル配列としてiPS細胞樹立に必須な因子であるOct4(POU5F1)のmRNA配列から、配列パターン""ATGC""を検索する場合を例に説明しています。","EMBOSS,塩基配列,配列解析","http://youtu.be/M5XF2UjE6g8","http://togotv.dbcls.jp/movie/081206fuzznuc.mov","http://doi.org/10.7875/togotv.2008.077","http://togotv.dbcls.jp/images/20081206_0.jpg","081206fuzznuc.mov","thumbnail/20081206_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"116","","togotv.2008.076","","20081205","MGIの使い方2 発現情報を調べる","MGI(Mouse Genome Informatics; 「エムジーアイ」と普通に発音します)は米国メーン州にあるThe Jackson Laboratory(ジャクソン研究所)が提供しているマウスに関する遺伝子、ゲノム、生物学的な情報を提供する統合データベースです。 ここでは脂肪代謝関連遺伝子peroxisome proliferator-activated receptor (PPAR) alphaを例にして、MGIに登録されているさまざまな実験条件で得られた発現情報を閲覧する方法を紹介します。","発現解析,遺伝子,データベース","http://youtu.be/JorxiHR6RIo","http://togotv.dbcls.jp/movie/081205MGI2.mov","http://doi.org/10.7875/togotv.2008.076","http://togotv.dbcls.jp/images/20081205_0.jpg","081205MGI2.mov","thumbnail/20081205_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"115","","togotv.2008.075","","20081201","統合TV番組作成体制(2008年12月現在)","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、backtranseqについて紹介しています。backtranseqを使うと、アミノ酸配列から塩基配列を求めることができます。 今回は、サンプル配列としてiPS細胞樹立に必須な因子であるOct4(POU5F1)のアミノ酸配列を例に説明しています。","DBCLS","http://youtu.be/JorxiHR6RIo","-","http://doi.org/10.7875/togotv.2008.075","http://togotv.dbcls.jp/images/20081201_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"114","","togotv.2008.074","","20081130","EMBOSS backtranseqを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS Explorerの解析ソフトの中から、revseqについて紹介しています。 revseqを使うと、塩基配列を逆相補配列(reverse complement)、逆配列(reverse)、相補配列(complement)に変換することが出来ます。 今回はサンプル配列としてiPS細胞樹立に必須な因子であるOct4(POU5F1)のmRNA配列を例に説明しています。","アミノ酸,塩基配列,EMBOSS","http://youtu.be/2qadz06IxuA","http://togotv.dbcls.jp/movie/081130backtranseq.mov","http://doi.org/10.7875/togotv.2008.074","http://togotv.dbcls.jp/images/20081130_0.jpg","081130backtranseq.mov","thumbnail/20081130_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"113","","togotv.2008.073","","20081129","EMBOSS revseqを使い倒す","今回の統合TVでは、DBCLSが提供するEMBOSS explorerの解析ソフトの中から、revseqについて紹介しています。
revseqを使うと、塩基配列を逆相補配列(reverse
complement)、逆配列(reverse)、相補配列(complement)に変換することが出来ます。 今回はサンプル配列として
iPS細胞樹立に必須な因子であるOct4(POU5F1)のmRNA配列を例に説明しています。","遺伝子,塩基配列,EMBOSS","http://youtu.be/2qadz06IxuA","http://togotv.dbcls.jp/movie/081129revseq.mov","http://doi.org/10.7875/togotv.2008.073","http://togotv.dbcls.jp/images/20081129_0.jpg","081129revseq.mov","thumbnail/20081129_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"112","","togotv.2008.072","","20081128","MGIの使い方その1 ノックアウトマウス情報の有無を調べる","MGI(Mouse Genome Informatics; 「エムジーアイ」と普通に発音します)は米国メーン州にあるThe Jackson Laboratory(ジャクソン研究所)が提供しているマウスに関する遺伝子、ゲノム、生物学的な情報を提供する統合データベースです。 ここではヒトの脂肪代謝関連遺伝子peroxisome proliferator-activated receptor (PPAR) alphaを例にして、MGIで閲覧することのできる主な情報と、特にノックアウトマウスの表現型を検索する方法を紹介します。","発現解析,遺伝子,データベース","http://youtu.be/aTm7N31tsgY","http://togotv.dbcls.jp/movie/081128MGI2.mov","http://doi.org/10.7875/togotv.2008.072","http://togotv.dbcls.jp/images/20081128_0.jpg","081128MGI2.mov","thumbnail/20081128_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"111","","togotv.2008.071","","20081117","Kazusa Annotation Suiteの活用@AJACS博多","本日の統合TVは、2008年10月18日に九州大学にて開催された「統合データベース講習会:AJACS博多」から、かずさDNA研究所植物ゲノム研究部 植物ゲノム情報研究室中村保一 室長による「Kazusa Annotation Suiteの活用」をお送りします。統合データベースプロジェクトの参画機関の一つである、かずさDNA研究所の中村研究室が開発・提供しているゲノムアノテーションの統合環境、Kazusa Annotation Suiteについて紹介していただいています。Kazusa Annotation Suiteは、ソーシャル・ゲノム・アノテーションツールのkazusa annotation、研究者コミュニティーのためのソーシャルネットワーク(SNS)サービスのkazusa navigation、生物関連の情報まとめサイトのkazusa wikiからなっており、今回は特にゲノムのアノテーションシステム、kazusa annotationを作成するに至った経緯や、その思想が説明されています。","講演, AJACS","http://youtu.be/4F8O-6mvcwA","http://togotv.dbcls.jp/movie/081117AJACS5_yn.mov","http://doi.org/10.7875/togotv.2008.071","http://togotv.dbcls.jp/images/20081117_0.jpg","081117AJACS5_yn.mov","thumbnail/20081117_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"110","","togotv.2008.070","","20081110","KEGG Atlas と KAAS アノテーション 〜KEGG における最近の開発から@AJACS博多","本日の統合TVは、2008年10月18日に九州大学にて開催された「統合データベース講習会:AJACS博多」から、京都大学化学研究所バイオインフォマティクスセンター 五斗進 准教授による「KEGG Atlas と KAAS アノテーション 〜KEGG における最近の開発から」をお送りします。京都大学で開発・提供されているKEGG (Kyoto Encyclopedia of Genes and Genomes)といえばパスウェイデータベースKEGG PATHWAYが世界的に有名ですが、今回は約120の代謝パスウェイマップを統合化し、さらにGoogle Mapsのようにインタラクティブな閲覧を可能にしたKEGG Atlasについて紹介していただいています。また、近年のゲノム解読生物の増加により、マニュアルでの機能アノテーションが追いつかない現状を受けて開発された、自動アノテーションシステムKAAS (KEGG Automatic Annotation Server)についても紹介していただいています。","講演, AJACS,KEGG","http://youtu.be/qzX_1StlmWc","http://togotv.dbcls.jp/movie/081110AJACS5_goto.mov","http://doi.org/10.7875/togotv.2008.070","http://togotv.dbcls.jp/images/20081110_0.jpg","081110AJACS5_goto.mov","thumbnail/20081110_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"109","","togotv.2008.069","","20081108","Spotfireを用いた公共マイクロアレイデータとローカルなデータの統合","今回の統合TVでは、データ可視化ツールであるSpotfire DecisionSiteを用いたマイクロアレイ解析の一事例を紹介します。概要としては、公共マイクロアレイデータベースから取得したマイクロアレイデータに自分の実験のデータを追加した上で、それらのデータを正規化(Normalize)し、階層的クラスタリング(Hierarchical clustering)を行う、という流れです。 今回例として用いたデータは、GNF symatlasのデータと、ヒトの脂肪細胞分化のマイクロアレイデータ(GSE1657)を一部改変したサンプルデータを用いています。","可視化,発現解析,遺伝子,ソフトウェア","http://youtu.be/A-48gp2IssY","http://togotv.dbcls.jp/movie/081108spotfire1.mov","http://doi.org/10.7875/togotv.2008.069","http://togotv.dbcls.jp/images/20081108_0.jpg","081108spotfire1.mov","thumbnail/20081108_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"108","","togotv.2008.068","","20081107","ESTデータベース Entrez Unigeneを使い倒す","NCBIが提供するデータベースの1つにUnigeneがあります。Unigeneは遺伝子のESTデータベースであり、様々な遺伝子のEST配列を取得することが出来ます。ESTとは""expressed sequence tag""の略でRNAの一部に当たる短い配列であり、転写産物の“目印”として使われています。また、検索した生物と他の生物種のタンパク質配列を比較することで機能を類推したり、ESTが生物の体のどの部位で得られているかなども知ることが出来ます。今回は、マウスのsox2遺伝子に関して調べた場合のUnigeneの使い方を紹介しています。","NCBI,配列解析,遺伝子,データベース","http://youtu.be/_4vLDhV1fjw","-","http://doi.org/10.7875/togotv.2008.068","http://togotv.dbcls.jp/images/20081107_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"107","","togotv.2008.067","","20081105","ライフサイエンス用語の意味推定@AJACS博多","本日の統合TVは、2008年10月18日に九州大学にて開催された「統合データベース講習会:AJACS博多」から、金沢大学大学院自然科学研究科 佐藤賢二 准教授による「ライフサイエンス用語の意味推定」をお送りします。Medlineの文章を解析して単語の意味を自動的に分類した結果の紹介や、それの応用として単語の意味を自動的に推定するシステムの紹介をしていただいています。動画中で紹介されているプロトタイプシステムは現在開発中のため、近々提供終了とのことですのでご留意ください。","講演, AJACS","http://youtu.be/7aaHhgNTm7Y","http://togotv.dbcls.jp/movie/081105AJACS5_ks.mov","http://doi.org/10.7875/togotv.2008.067","http://togotv.dbcls.jp/images/20081105_0.jpg","081105AJACS5_ks.mov","thumbnail/20081105_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"106","","togotv.2008.066","","20081031","統合データベース講習会:AJACS博多 科学データは誰のものか?@AJACS博多","本日の統合TVは、2008年10月18日に九州大学にて開催された「統合データベース講習会:AJACS博多」から、大久保公策国立遺伝学研究所 教授による「科学データは誰のものか?」をお送りします。知識やデータベースを統合しようとするときに立ちはだかる文献やデータの著作権に関する問題や、これらのオープンアクセス化運動の一つであるサイエンスコモンズなどが、多少?過激に紹介されています。","講演, AJACS","http://youtu.be/CMHa8lhz0qY","http://togotv.dbcls.jp/movie/081031AJACS5_ko.mov","http://doi.org/10.7875/togotv.2008.066","http://togotv.dbcls.jp/images/20081031_0.jpg","081031AJACS5_ko.mov","thumbnail/20081031_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"105","","togotv.2008.065","","20081024","Entrez Book検索を使い倒す","NCBIが提供するEntrezでは医学、生物学に関する教科書を中身を含めて検索・閲覧することができます。検索できるのは残念ながら英語の原著版のみですが、検索した教科書の内容を、章、チャプタ、パラグラフ毎に全文閲覧することができるだけでなく、教科書に掲載されている図表も細かく閲覧することが可能です。また、キーワード検索も対応しており、教科書の中で閲覧したい箇所を容易に見つけることができます。今回は例として、細胞生物学や分子生物学を中心に生命科学分野の入門書・教科書として名高い”Molecular Biology of the Cell”(細胞の分子生物学)を検索しています。","NCBI,文献検索","http://youtu.be/C8rUji0VVMU","-","http://doi.org/10.7875/togotv.2008.065","http://togotv.dbcls.jp/images/20081024_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"104","","togotv.2008.064","","20081011","配列のアラインメント作成ツールClustalWを使い倒す","ClustalW(「クラスタルダブル」と読みます)は複数の塩基配列やアミノ酸配列をできるかぎり一致するように並べる(多重(マルチプル)アラインメント)ツールです。アラインメントは、タンパク質ファミリーの保存残基を探したり、二次構造や三次構造の予測を助けたり、PCRプライマーの設計に一役買ったり、分子進化解析の基礎データともなります。ここでは、例としてヒト、マウス、ブタの各生物種における脂肪代謝遺伝子peroxisome proliferator-activated receptor(PPAR)ファミリーの塩基配列をサンプル配列として多重アラインメントを行い、系統樹を作成する方法を説明します。また、ClustalWで解析した結果をTreeView Xで描写する動画も公開しています!","ウェブツール,配列解析,塩基配列,系統樹,アラインメント","http://youtu.be/DLuZ8wKN2lg","http://togotv.dbcls.jp/movie/081011clustalw.mov","http://doi.org/10.7875/togotv.2008.064","http://togotv.dbcls.jp/images/20081011_0.jpg","081011clustalw.mov","thumbnail/20081011_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"103","","togotv.2008.063","","20081010","分子可視化ソフト『Chimera』の使い方 応用編","chimera』はPDBファイルなどのデータを元に生体高分子(主にタンパク質)の立体構造を3D画像で表示する分子可視化ソフトです。前回の番組では、このソフトの使い方を、様々な用途別に細かく解説しましたが、今回の番組ではChimeraを使った応用編として、アミノ酸残基の性質別の色分けの方法や原子間距離に応じた範囲選択とそれに伴う原子同士の接触判定の方法についてその使い方を解説しています。","タンパク質,可視化,PDB","http://youtu.be/x4_WFQr_acY","-","http://doi.org/10.7875/togotv.2008.063","http://togotv.dbcls.jp/images/20081010_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"102","","togotv.2008.062","","20081004","遺伝子発現プロファイルデータベースBioGPSを使い倒す","BioGPS(「バイオジーピーエス」と読みます)はAffymetrix社製のマイクロアレイであるGeneChipを用いたヒト、マウス、ラットのさまざまな組織や細胞(株)における遺伝子発現プロファイルのデータベースです。このデータベースは昨年の番組でも紹介したGNF SymAtlasのメジャーアップデート版です。 今回から新たにマウスのMOE430アレイなどのデータが追加され、検索できる遺伝子の数や対象となる組織や細胞(株)の種類が拡充されています。また、マウスのエキソンアレイのデータも参照することが可能で、遺伝子のスプライシングバリアント(Splicing variant)の発現状況も調べることができます。さらに、検索した遺伝子に対して、種々の外部のデータベースに横断検索した結果を表示することができます。親切な方がBioGPS(SymAtlas)に登場する組織名の日本語訳の一覧表を作ってくれました。とても参考になります!(090603追記)","遺伝子,発現解析,文献検索","http://youtu.be/TOg6VSwYjJI","http://togotv.dbcls.jp/movie/081004biogps.mov","http://doi.org/10.7875/togotv.2008.062","http://togotv.dbcls.jp/images/20081004_0.jpg","081004biogps.mov","thumbnail/20081004_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"101","","togotv.2008.061","","20081003","TogoWS RESTサービスを使い倒す","RESTとは、DBCLSが統合ホームページで提供しているTogoWSにおいて提供されているサービスの一つです。TogoWSでは、ウェブサービスによって DDBJ, KEGG, PDBj, CBRCの4センターをバーチャルに統合し、国内の主要データベースと解析サービスを透過的に利用可能にする取り組みを行っています。これまで4センターで独自に開発されてきたウェブサービスの API を、ライフサイエンス統合データベースセンターにおいて一元的に利用できるようにし、相互に連携するために必要な追加機能を提供することで、ワークフローを容易に構築できる環境をユーザに提供します。 このRESTサービスでは、URLにデータベース名やそのエントリを追加するだけで簡単にそのデータベースから欲しい情報を得ることが出来ます。 また特定の情報だけを選んで取得することも出来ます。","文献検索,DBCLS","http://youtu.be/EvL09NVFY1k","-","http://doi.org/10.7875/togotv.2008.061","http://togotv.dbcls.jp/images/20081003_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"100","","togotv.2008.060","","20080927","オンライン人体地図サービス「アナトモグラフィー」を使い倒す 2008秋","アナトモグラフィーは統合ホームページで提供されているツールの一つで、器官別の発現解析データ、疾患別症状分布などの手持ちのデータを人体の3D画像にマッピングして俯瞰することができます。人体地図にデータをマップすることで、""体に関する情報""どうしの関係を視覚的・直感的に理解したい場面で真価を発揮します。昨年および前回と紹介してきた同ツールですが、いまなお現在進行形でその改良が進められており、内容の充実とともに使いやすさも日々向上しています。今回はトップページの変更に伴い、新たに追加された内容を中心に使い方の説明をしています。","DBCLS,可視化,辞書","http://youtu.be/lrFChseII7w","http://togotv.dbcls.jp/movie/080927ag3.mov","http://doi.org/10.7875/togotv.2008.060","http://togotv.dbcls.jp/images/20080927_0.jpg","080927ag3.mov","thumbnail/20080927_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"99","","togotv.2008.059","","20080926","遺伝子のRefSeq IDを調べる","RefSeqとは、Reference Sequenceの略で、NCBIが提供する配列解析に使うための文字通り""reference""(リファレンス)となるべき配列データベースのことです。その配列の多くは核酸配列データベースのDDBJやEMBL、GenBank由来であり、それらの中からもっとも代表としてふさわしい(参照の基準となる)ものが、目で見て選ばれています。 今回の番組では、このRefSeqデータベースから自分の興味ある遺伝子のRefSeq IDを調べ、そのmRNA配列とアミノ酸配列を取得する方法について説明しています。","NCBI,遺伝子,塩基配列,アミノ酸,配列解析","http://youtu.be/AFKXi8pO4Zc","-","http://doi.org/10.7875/togotv.2008.059","http://togotv.dbcls.jp/images/20080926_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"98","","togotv.2008.058","","20080925","ライフサイエンス統合データベースセンターへの行き方〜千代田線・根津駅編〜","本日の統合TVは、ライフサイエンス統合データベースセンターへの行き方がよくわからない、という声にお答えして、センターまでの道順を動画にしてみました。センターへはいくつかの駅が利用できますが、今回は最寄り駅である東京メトロ千代田線根津駅からのルートを紹介します。根津駅の1番出口(9号車付近、綾瀬・北千住方面行きは前側、大手町・日比谷・代々木上原方面は後ろ側が便利です。)からのルートです。2番出口から出てしまっても、オレンジ色の牛丼屋さんを目指して歩けば1番出口に行けます。ちなみに、東京駅からは二重橋前駅で乗り換えると便利らしいです。","DBCLS","http://youtu.be/lGl1ARy-ljE","http://togotv.dbcls.jp/movie/080925DBCLSroute.mov","http://doi.org/10.7875/togotv.2008.058","http://togotv.dbcls.jp/images/20080925_0.jpg","080925DBCLSroute.mov","thumbnail/20080925_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"97","","togotv.2008.057","","20080924","分子可視化ソフト『Chimera』の使い方","chimera』はPDBファイルなどのデータを元に生体高分子(主にタンパク質)の立体構造を3D画像で表示する分子可視化ソフトです。今回の番組では、このソフトの使い方を、様々な用途別に細かく解説しています。","タンパク質,可視化,ソフトウェア,PDB","http://youtu.be/n0q0Qm6oq7U","-","http://doi.org/10.7875/togotv.2008.057","http://togotv.dbcls.jp/images/20080924_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"96","","togotv.2008.056","","20080912","OReFiLを使い倒す","DBCLSが統合ホームページで提供するサービスの一つとしてOReFiLがあります。OReFiLは、(an Online Resource Finder for Lifesciences, 「オレフィル」と読みます)は、ライフサイエンス分野のパブリッシュされた文献に記載されているウェブリソース(データベースやツールなど)を検索します。近年の分子生物学の発展によって大量のデータが生産され、それに付随する形でデータベースやツールなどが数多く作成されており、インターネットを通じて提供されています。多くのリソースが提供されている状態は選択肢が多いという点では歓迎すべきことですが、逆に情報が氾濫し「何を使えばよいのかわからない」、「リソースがどこにあるのかわからない」、「そもそもリソースがあるかどうかもわからない」という事態を招いてしまっています。Googleなどの検索エンジンは、ウェブ上のあらゆる情報を収集しているため、ノイズとなる情報も多く、必ずしも目的のリソースにアクセスすることが難しいのが現状です。そこで、OReFiLではMEDLINEのアブストラクトやオープンアクセスの文献などの査読を経た情報からウェブ上のリソースを収集して、検索できる仕組みを提供しています。収集したテキストの情報を解析しているため、検索の際に問い合わせに対して適切な結果を返してくれます。そのため、容易に目的のリソースにアクセスすることができます。","DBCLS,文献検索","http://youtu.be/KEiRTVjYbUY","-","http://doi.org/10.7875/togotv.2008.056","http://togotv.dbcls.jp/images/20080912_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"95","","togotv.2008.055","","20080911","蛋白質核酸酵素全文検索を使い倒す","DBCLSが統合ホームページで提供するサービスの一つとして蛋白質核酸酵素全文検索があります。ここでは、生命科学分野の総合レビュー誌で、和文総説誌として唯一PubMedにも掲載されている蛋白質核酸酵素(共立出版)のバックナンバーを全文検索することができます。自分の専門外の分野について概要を知りたいときなどに役立ちます。","DBCLS,文献検索","http://youtu.be/aQ1P5yVAMGw","-","http://doi.org/10.7875/togotv.2008.055","http://togotv.dbcls.jp/images/20080911_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"94","","togotv.2008.054","","20080905","統合ホームページへようこそ","統合ホームページは文部科学省「統合データベースプロジェクト」のポータルサイトです。今回の番組では、統合ホームページを使いこなす上で知っておくと便利な特徴や小技などを初めての人でも分かるように紹介しています。","DBCLS","http://youtu.be/U5NNyEirO-I","http://togotv.dbcls.jp/movie/080905LSDByokoso.mov","http://doi.org/10.7875/togotv.2008.054","http://togotv.dbcls.jp/images/20080905_0.jpg","080905LSDByokoso.mov","thumbnail/20080905_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"93","","togotv.2008.053","","20080826","生命科学 学協会 カタログを使い倒す","DBCLSが統合ホームページで提供するサービスの一つとして生命科学 学協会 カタログがあります。ここでは、生命科学に関連した様々な学協会を検索し、簡単にそのカタログやホームページを閲覧することが出来ます。","DBCLS","http://youtu.be/8TzKj1GiDMM","-","http://doi.org/10.7875/togotv.2008.053","http://togotv.dbcls.jp/images/20080826_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"92","","togotv.2008.052","","20080825","文科省「ゲノム」研究報告書全文検索を使い倒す","文科省「ゲノム」研究報告書全文検索は、文部科学省所管の科学研究費補助金(科研費)のうち、「ゲノム特定領域」に採択された研究課題の成果報告書データを検索できるサービスです。ゲノム特定4領域(生命システム情報、比較ゲノム、応用ゲノム、基盤ゲノム)のそれぞれに分類される研究課題を一覧したり、タイトルや著者などによる検索を行うことができます。さらに「全文検索」を用いると、報告書に含まれる全ての文字列からキーワード検索を行うことができます。","DBCLS,ゲノム,文献検索","http://youtu.be/AEfUAO-m0Yg","-","http://doi.org/10.7875/togotv.2008.052","http://togotv.dbcls.jp/images/20080825_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"91","","togotv.2008.051","","20080808","PCRプライマー設計ツール Primer3の使い方","Primer3はPCR用のプライマーを設計するためのツールです。PCR実験成功の可否は、プライマー設計によるところが大きいですが、本ツールはWebブラウザ上で、実験条件に合った様々なパラメータを考慮しながらプライマー設計を行うことが可能です。ここでは例としてヒトの脂肪代謝遺伝子peroxisome proliferator-activated receptor(PPAR) gammaの塩基配列をサンプル配列として、設定可能なパラメータ項目の説明を交えながらPrimer3の使い方を説明します。","遺伝子,塩基配列,ウェブツール","http://youtu.be/W-UNjmhKe4E","http://togotv.dbcls.jp/movie/080808primer3.mov","http://doi.org/10.7875/togotv.2008.051","http://togotv.dbcls.jp/images/20080808_0.jpg","080808primer3.mov","thumbnail/20080808_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"90","","togotv.2008.050","","20080806","統合データベース講習会:AJACS本郷1 DBCLS独自サービス「目次」、「カタログ」系の使いこなし術/教育・人材育成のリソース紹介他","本日の統合TVは、2008年7月3日に統合データベースセンターにて開催された「統合データベース講習会:AJACS本郷1」から、坊農秀雅 ライフサイエンス統合データベースセンター 特任准教授による「DBCLS独自サービス「目次」、「カタログ」系の使いこなし術/教育・人材育成のリソース紹介他」をお送りします。ライフサイエンス統合データベースセンターで提供している、データベースカタログ(統合TV:生命科学系データベースカタログを使い倒す)や、GenBank/EMBL/DDBJに登録されているDNA塩基配列を整理したDNAデータバンク総覧(統合TV:DNAデータベース総覧と検索を使い倒すその壱)、遺伝子発現データベースGEOに登録されている発現情報を整理したGEO目次 (統合TV:遺伝子発現バンク(GEO)目次を使い倒す その壱)についての解説や使い方が紹介されています。また、統合プロジェクトで提供しているゲノムアノテーションをゲノムブラウザで表示する方法(統合TV:Ensembl tips 〜DBCLSで提供しているゲノムアノテーションを表示する〜)についても紹介されています。","実習, AJACS","http://youtu.be/whIugPH1u70","http://togotv.dbcls.jp/movie/080806AJACS3_bono2.mov","http://doi.org/10.7875/togotv.2008.050","http://togotv.dbcls.jp/images/20080806_0.jpg","080806AJACS3_bono2.mov","thumbnail/20080806_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"89","","togotv.2008.049","","20080805","統合データベース講習会:AJACS本郷1 OReFiLとAllie","本日の統合TVは、2008年7月3日に統合データベースセンターにて開催された「統合データベース講習会:AJACS本郷1」から、山本泰智 ライフサイエンス統合データベースセンター 特任研究員による「OReFiLとAllie」をお送りします。ライフサイエンス統合データベースセンターで開発している、web上で利用可能なデータベースやツール等を検索するOReFiLや、生命科学分野で使われる略語の展開形を調べるAllie (統合TV:Allieを使って略語の正式名称を検索する)についての解説や使い方が紹介されています。","実習, AJACS,文献検索","http://youtu.be/l1LWF6Ky3HQ","http://togotv.dbcls.jp/movie/080805AJACS3_yy.mov","http://doi.org/10.7875/togotv.2008.049","http://togotv.dbcls.jp/images/20080805_0.jpg","080805AJACS3_yy.mov","thumbnail/20080805_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"88","","togotv.2008.048","","20080804","統合データベース講習会:AJACS本郷1 アナトモグラフィー","本日の統合TVは、2008年7月3日に統合データベースセンターにて開催された「統合データベース講習会:AJACS本郷1」から、三橋信孝 ライフサイエンス統合データベースセンター 特任研究員による「アナトモグラフィー」をお送りします。ライフサイエンス統合データベースセンターで開発している、三次元人体地図サービスアナトモグラフィー(統合TV:オンライン人体地図サービス「アナトモグラフィー」を使い倒す/a>)や、解剖学用語に基づいた臓器の三次元形状や人体中の位置についてのデータベースBodyParts3D (旧ポリゴンマン辞書)についての解説や使い方が紹介されています。講習会のページにあるプレゼン資料にそって説明がなされているので、こちらもあわせてご覧ください(画面には映っていませんが、動画の左側にはアナトモグラフィーのページが表示されています)。","実習, AJACS,可視化","http://youtu.be/unEodj04rXI","http://togotv.dbcls.jp/movie/080804AJACS3_nm.mov","http://doi.org/10.7875/togotv.2008.048","http://togotv.dbcls.jp/images/20080804_0.jpg","080804AJACS3_nm.mov","thumbnail/20080804_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"87","","togotv.2008.047","","20080801","学会要旨統合検索を使い倒す","DBCLSが統合ホームページで提供するサービスの一つとして学会要・/a>があります。ここでは、生命科学の分野に関連した学会の講演要旨を簡単に検索することができます。","DBCLS","http://youtu.be/K48-H4Y2ADc","-","http://doi.org/10.7875/togotv.2008.047","http://togotv.dbcls.jp/images/20080801_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"86","","togotv.2008.046","","20080731","統合データベース講習会:AJACS本郷1 生命科学横断検索の利用法","本日の統合TVは、2008年7月3日に統合データベースセンターにて開催された「統合データベース講習会:AJACS本郷1」から、川本祥子 ライフサイエンス統合データベースセンター 特任准教授による「生命科学公横断検索の利用法」をお送りします。ライフサイエンス統合データベースセンターで開発している、横断検索についての解説や使い方が紹介されています(統合TV:「統合ホームページ」を使い倒す−横断検索)。横断検索は、ライフサイエンス系データベースのエントリや特許、報告書、新聞記事、共立出版社より発行されている蛋白質核酸酵素の記事などを串刺しにして検索することができるサービスです。講習会のページにそって説明がなされているので、こちらもあわせてご覧ください(画面には映っていませんが、動画の左側には講習会のページが表示されています)。","実習, AJACS,文献検索,特許","http://youtu.be/itWHBJOyt5M","http://togotv.dbcls.jp/movie/080731AJACS3_sk.mov","http://doi.org/10.7875/togotv.2008.046","http://togotv.dbcls.jp/images/20080731_0.jpg","080731AJACS3_sk.mov","thumbnail/20080731_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"85","","togotv.2008.045","","20080730","統合データベース講習会:AJACS本郷1 使いこなすための最低限のコンピュータ使いこなし術","本日の統合TVは、2008年7月3日に統合データベースセンターにて開催された「統合データベース講習会:AJACS本郷1」から、坊農秀雅 ライフサイエンス統合データベースセンター 特任准教授による「使いこなすための最低限のコンピュータ使いこなし術」をお送りします。ライフサイエンスの分野に限らず、さまざまな情報を検索する際に便利なTipsや、IP Messenger等を利用して研究室内でファイルを共有する簡便な方法などを紹介しています。講習会のページにそって説明がなされているので、こちらもあわせてご覧ください(画面には映っていませんが、動画の左側には講習会のページが表示されています)。","実習, AJACS","http://youtu.be/zgqbQjl0VHY","http://togotv.dbcls.jp/movie/080730AJACS3_bono1.mov","http://doi.org/10.7875/togotv.2008.045","http://togotv.dbcls.jp/images/20080730_0.jpg","080730AJACS3_bono1.mov","thumbnail/20080730_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"84","","togotv.2008.044","","20080729","統合データベース講習会:AJACS本郷1 統合データベースプロジェクトとは","本日の統合TVは、2008年7月3日に統合データベースセンターにて開催された「統合データベース講習会:AJACS本郷1」から、高木利久 ライフサイエンス統合データベースセンター センター長による「統合データベースとは」をお送りします。ライフサイエンス統合データベースプロジェクトが開始されるに至った経緯や、プロジェクトの目的などを紹介しています。","講演, AJACS","http://youtu.be/TSc4sn8G37s","http://togotv.dbcls.jp/movie/080729AJACS3_tt.mov","http://doi.org/10.7875/togotv.2008.044","http://togotv.dbcls.jp/images/20080729_0.jpg","080729AJACS3_tt.mov","thumbnail/20080729_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"83","","togotv.2008.043","","20080720","統合TVの使い方","統合TVのコンテンツ数は放送開始丸一年で80を超えました。コンテンツ数の増加とともに自分が使いたいデータベースやツールが見つかりにくくなってきたかもしれません。そこで今回の番組では、統合TV内での番組検索の仕方を中心に統合TV自体の使い方を紹介します。","DBCLS","http://youtu.be/irIZlqDkIWY","http://togotv.dbcls.jp/movie/080720usingtogotv.mov","http://doi.org/10.7875/togotv.2008.043","http://togotv.dbcls.jp/images/20080720_0.jpg","080720usingtogotv.mov","thumbnail/20080720_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"82","","togotv.2008.042","","20080718","新聞記事検索を使い倒す","DBCLSが統合ホームページで提供するサービスの一つとして新聞記事検索があります。ここでは、生命科学の分野に関連した毎日新聞の記事を簡単に検索することができます。","DBCLS,文献検索","http://youtu.be/1Gm0xoYEyGI","-","http://doi.org/10.7875/togotv.2008.042","http://togotv.dbcls.jp/images/20080718_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"81","","togotv.2008.041","","20080715","新たなる有用遺伝子候補を探索する","現在、世界の遺伝子情報データベース上には、機能に関する情報が記載されていないままの膨大な数の塩基配列が眠っています(特に環境微生物由来のメタゲノム配列など)。それらの中から機能が判明している遺伝子と高い相同性を持つものが見つかれば、それは同等の機能を持つ可能性の高い新規遺伝子の候補発見となります。 今回の番組では、その方法についてBLASTによる相同性検索とORFfinderの使いこなしを交えて詳細に説明しています。","NCBI,遺伝子","http://youtu.be/UIaUTiX5pd0","-","http://doi.org/10.7875/togotv.2008.041","http://togotv.dbcls.jp/images/20080715_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"80","","togotv.2008.040","","20080709","統合TVの作り方(MacOSX版)","統合TVが始まって早いもので一年になりました。そこで今回の番組では、統合TVがどのようにして作られているかを紹介します。統合TVは WindowsXPとMacOSXの両方の環境で制作されていますが、今回はMacOSXでの制作場面をさまざまなノウハウとともにお送りします。さあ、あなたも統合TVを作ってみませんか?!","DBCLS","http://youtu.be/qfNCX9lP3TU","http://togotv.dbcls.jp/movie/080709togotvmacosx.mov","http://doi.org/10.7875/togotv.2008.040","http://togotv.dbcls.jp/images/20080709_0.jpg","080709togotvmacosx.mov","thumbnail/20080709_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"79","","togotv.2008.039","","20080704","生物アイコンを使い倒す","DBCLSが統合ホームページで提供するサービスの一つとして生物アイコンがあります。ここでは、生命科学の分野でしばしば登場する生物の学名に対応した和名と画像が分類ごとに整理されています。ここに載っている生物の画像はクリエイティブ・コモンズ・ライセンスのもとで自由に使用することが可能です。","DBCLS,画像","http://youtu.be/IsIOTXxLesc","-","http://doi.org/10.7875/togotv.2008.039","http://togotv.dbcls.jp/images/20080704_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"78","","togotv.2008.038","","20080627","統合TVの作り方(Windows版)","統合TVが始まってまもなく1年になろうとしています。そこで今回の番組では、統合TVがどのようにして作られているかを紹介します。統合TVはWindowsXPとMacOSXの両方の環境で制作されていますが、今回はまずWindowsXPでの制作場面をさまざまなノウハウとともにお送りします。さあ、あなたも統合TVを作ってみませんか?!","DBCLS","http://youtu.be/8V0itAdw1FY","-","http://doi.org/10.7875/togotv.2008.038","http://togotv.dbcls.jp/images/20080627_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"77","","togotv.2008.037","","20080623","遺伝子発現バンク(GEO)目次を使い倒す〜その壱","NCBI GEO(Gene Expression Omnibus)は、遺伝子発現バンクとして、主にマイクロアレイデータの受け皿となっています。様々な種類の遺伝子発現データを受け入れるため、そのデータ単位がデータセット(研究・目的ごとにまとめられた発現データの集合 (発現データマトリクス))、サンプル(測定に附された生体試料)、プラットフォーム(発現定量のための測定プロトコル)の3種類あることや、実験手法の多様さによって全体のデータの傾向を掴みづらいのも事実です。 そこで、この NCBI GEO を快適に使い、データの全容を俯瞰するための仕組み「遺伝子発現バンク(GEO)目次」、通称「GEO目次」が国立遺伝学研究所の大久保公策教授らによって開発され、現在DBCLSによって維持されています。今回はその使い方の概略を紹介します。数多く登録されている遺伝子発現データの大まかな傾向をつかむのに役に立つことでしょう。","DBCLS,可視化,発現解析,遺伝子,GEO","http://youtu.be/Tw4H91KQQJ0","http://togotv.dbcls.jp/movie/080623geomkg1.mov","http://doi.org/10.7875/togotv.2008.037","http://togotv.dbcls.jp/images/20080623_0.jpg","080623geomkg1.mov","thumbnail/20080623_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"76","","togotv.2008.036","","20080613","機能既知遺伝子をデータベースから検索する(3/3 TreeViewによる系統樹作成)","機能未知の遺伝子がどのような機能を持っているのかを調べるときにまず行われるのは、機能が分かっている遺伝子との比較です。前々回の番組でDDBJ (DNA Data Bank of Japan)の検索サービスであるARSA (All-round Retrieval of Sequence and Annotation)を使って、検索した遺伝子の近縁配列を入手する方法を紹介しました。また、前回の番組でClustalWを使って系統樹を作成するための系統解析データを入手する方法を紹介しました。今回は3部作の締めくくりとして、TreeViewというツールを使って得られた系統解析データから系統樹を作成・表示する方法について紹介しています。","遺伝子,配列解析,系統樹,可視化,データベース","http://youtu.be/AeP4Xc3VBL4","-","http://doi.org/10.7875/togotv.2008.036","http://togotv.dbcls.jp/images/20080613_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"75","","togotv.2008.035","","20080612","機能既知遺伝子をデータベースから検索する(2/3 ClustalWによる系統解析)","機能未知の遺伝子がどのような機能を持っているのかを調べるときにまず行われるのは、機能が分かっている遺伝子との比較です。前回の番組でDDBJ (DNA Data Bank of Japan)の検索サービスであるARSA (All-round Retrieval of Sequence and Annotation)を使って、検索した遺伝子の近縁配列を入手する方法を紹介しました。今回は、これらの取得した配列データ群から系統樹を作成するためにClustalWを実行する方法を紹介しています。","遺伝子,配列解析,系統樹,可視化,データベース","http://youtu.be/pyTCeFhQ5ok","-","http://doi.org/10.7875/togotv.2008.035","http://togotv.dbcls.jp/images/20080612_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"74","","togotv.2008.034","","20080611","機能既知遺伝子をデータベースから検索する(1/3 ARSA による既知遺伝子の検索)","機能未知の遺伝子がどのような機能を持っているのかを調べるときにまず行われるのは、機能が分かっている遺伝子との比較です。今回はDDBJ (DNA Data Bank of Japan)(でぃーでぃーびーじぇい、と読みます)の検索サービスであるARSA (All-round Retrieval of Sequence and Annotation)(あるーさ、と読みます)を使って、データベース上から機能既知遺伝子を検索する方法を『ペニシリン合成遺伝子の検索』を例に紹介します。","遺伝子,配列解析,系統樹,可視化,データベース","http://youtu.be/3sdnfvy6MBQ","-","http://doi.org/10.7875/togotv.2008.034","http://togotv.dbcls.jp/images/20080611_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"73","","togotv.2008.033","","20080610","「統合ホームページ」用Firefox検索プラグインを使い倒す","2008年6月2日に「統合ホームページ」が公開されました。今回は、統合ホームページ専用Firefox検索プラグインを自分のFirefoxに設定して、横断検索を便利に使う方法を紹介します。 実際にそれを利用し、「糖尿病」で検索するとGoogle検索ではインターネット全体から約87万ものヒットがありますが、統合ホームページの横断検索を利用することで生命科学データベースに対してのみ特化した検索結果が得られます。","DBCLS,文献検索","http://youtu.be/SRfLOiMVdJs","http://togotv.dbcls.jp/movie/080610TOGOHP2.mov","http://doi.org/10.7875/togotv.2008.033","http://togotv.dbcls.jp/images/20080610_0.jpg","080610TOGOHP2.mov","thumbnail/20080610_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"72","","togotv.2008.032","","20080606","オンライン人体地図サービス「アナトモグラフィー」を使い倒す","アナトモグラフィーは統合ホームページで提供されているツールの一つで、器官別の発現解析データ、疾患別症状分布などの手持ちのデータを人体の3D画像にマッピングして俯瞰することができます。人体地図にデータをマップすることで、""体に関する情報""どうしの関係を視覚的・直感的に理解したい場面で真価を発揮します。昨年放送した番組で紹介した同ツールですが、その後改良が進められ、内容の充実とともに使いやすさも向上しています。今回はアップデートされた内容を中心に使い方の説明をしています。","発現解析,可視化,DBCLS","http://youtu.be/lrFChseII7w","-","http://doi.org/10.7875/togotv.2008.032","http://togotv.dbcls.jp/images/20080606_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"71","","togotv.2008.031","","20080603","「統合ホームページ」を使い倒す〜横断検索","昨日2008年6月2日に「統合ホームページ」が公開されました。統合TVでは、新たに公開されたデータベースやサービスを今後紹介して行きます。今回は一番の目玉、横断検索を取り上げ、その基本的な使い方および注意点について説明します。 横断検索では従来の基本的な分子生物学系データベースに加えて、特許のデータベースや「蛋白質 核酸酵素」の過去記事(1985年〜2005年)も検索対象となっており、一度にこれらすべてのデータベースに検索がかかるようになっています。今回の例に挙げている'pparg'のような略語で検索することが多いかと思いますが、検索ヒット数を増やすためには前に紹介したAllieを使って略語の正式名称を調べて検索し直すとよいでしょう。","DBCLS,文献検索,特許","http://youtu.be/GvRy9uUXrbE","http://togotv.dbcls.jp/movie/080603TOGOHP.mov","http://doi.org/10.7875/togotv.2008.031","http://togotv.dbcls.jp/images/20080603_0.jpg","080603TOGOHP.mov","thumbnail/20080603_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"70","","togotv.2008.030","","20080601","統合TV番組作成体制(2008年6月現在)","これまでとくに統合TVの番組作成体制を公表してきませんでしたが、新たに手伝ってくれる方が増えましたので、紹介します(敬称略)。","DBCLS","-","http://togotv.dbcls.jp/movie/080601credit.mov","http://doi.org/10.7875/togotv.2008.030","http://togotv.dbcls.jp/images/20080601_0.jpg","080601credit.mov","thumbnail/20080601_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"69","","togotv.2008.029","","20080523","Biomartを使い倒すIDの対応表を作成する","Biomartは、the Ontario Institute for Cancer Research (OiCR) とthe European Bioinformatics Institute (EBI) が共同で開発している(になりました)クエリ指向型データ管理システムです。これを使うといろいろなことができますが、今回は以前にも紹介しましたIDの対応表を作成するやり方を最新のBiomartのウェブインターフェースで再度紹介しています。具体的には、BioMart Central Portalを使って、Affymetrix mouse430 2のマイクロアレイにある遺伝子セットに絞り込んでからEnsembl Gene IDを介してRefSeq IDとEntrezGene IDを対応づけた表を作成しタブ区切りテキストにしてダウンロードする手順を紹介しています。","ゲノム,発現解析,塩基配列,遺伝子,データベース","http://youtu.be/G4w6ZIEBnF8","http://togotv.dbcls.jp/movie/080523Biomart080523.mov","http://doi.org/10.7875/togotv.2008.029","http://togotv.dbcls.jp/images/20080523_0.jpg","080523Biomart080523.mov","thumbnail/20080523_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"68","","togotv.2008.028","","20080522","Allieを使って略語の正式名称を検索する","Allie(「アリー」と発音します)は、 ライフサイエンス統合データベースセンター(DBCLS)が提供する医学生物系論文書誌情報データベースMEDLINEを対象とし、出現する略語(略字)とその正式名称のペアを検索するシステムです。 生命科学系の論文では非常に多くの略語が使われており、同じ表記でも全く違う意味を示していることが少なくありません。Allieでは、利用者の興味のある略語を検索語として入力することで、その使われ方をMEDLINE中によく現れる順で一覧表示すると共に、その略語が使われた論文の発表年を提示しています。また、検索された各略語について、その意味で使われている論文中で共起する他の略語も同時に検索されることが特徴です。","DBCLS,文献検索,辞書","http://youtu.be/rChJRJ0aSL8","-","http://doi.org/10.7875/togotv.2008.028","http://togotv.dbcls.jp/images/20080522_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"67","","togotv.2008.027","","20080514","DNAデータベース総覧と検索を使い倒す","DNAデータベース総覧と検索は、文部科学省統合データベースプロジェクトにおいて開発、維持されている、巨大な国際DNAバンク(INSD(International Nucleotide Sequence Database)と呼ばれるDDBJ/EMBL/GenBankのことです)を高速に検索し生物種、分子種、プロジェクトに分類して表示するシステムです。 ある研究機関から発表されたある生物のゲノムデータを一括してダウンロードするというような研究単位でのデータ取得ができます。BLASTによる配列検索、核酸関連の特許公報へのダイレクトリンク、レコードの時系列展開も可能です。 今回はその使い方の概要を特許として登録されているDNA配列の閲覧を例にその使い倒し方を紹介しています。","DBCLS,塩基配列,遺伝子,特許","http://youtu.be/VysWWfSyqVE","http://togotv.dbcls.jp/movie/080514INSD.mov","http://doi.org/10.7875/togotv.2008.027","http://togotv.dbcls.jp/images/20080514_0.jpg","080514INSD.mov","thumbnail/20080514_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"66","","togotv.2008.026","","20080512","WiredMarkerを使いこなす","Wired-Markerは、文部科学省統合データベースプロジェクトにおいて、データベース構築を支援するソフトウェアとして開発されたフリーウェアです(開発名称:ScrapParty)。 WiredMarkerはWebページに引く「消えないマーカー」で、色・形自在のマーカーは再訪問を案内する""電子栞""であり、マークした情報は自動的にスクラップされます。データベース構築作業において、Webページとして参照可能な論文等の情報源からの情報収集をサポートします。","DBCLS,環境設定,情報収集","http://youtu.be/BGojumQ20Co","http://togotv.dbcls.jp/movie/080512WiredMarker.mov","http://doi.org/10.7875/togotv.2008.026","http://togotv.dbcls.jp/images/20080512_0.jpg","080512WiredMarker.mov","thumbnail/20080512_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"65","","togotv.2008.025","","20080508","生命科学系データベースカタログを使い倒す","生命科学系データベースカタログは、 ライフサイエンス統合データベースセンター(DBCLS)が提供する「データベースのデータベース」です。データベースが数多く存在する昨今、データベースをうまく使いこなすことが研究の進展を左右するといっても過言ではありません。しかし実際の利用者からは「必要なデータベースが見つからない」「何のデータベースがあるのか分からない」という声をよく聞きます。生命科学系データベースカタログでは、国内外のデータベースを目的や対象、生物種、提供機関別に分類し、それらの説明が日本語で書かれているのが特徴です。また個々のデータベースについて利用者がコメントをつけることもできます。","DBCLS,データベース","http://youtu.be/Pr981ajFJ9o","-","http://doi.org/10.7875/togotv.2008.025","http://togotv.dbcls.jp/images/20080508_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"64","","togotv.2008.024","","20080507","統合DBを使い倒すためにOpenIDを取得する","OpenIDは、一つのIDで対応するWebサービスに認証ができる仕組みです。OpenID 対応サービスを利用する場合には、各サービス毎にアカウントやユーザ情報を管理する必要がなくなります。 統合DBセンターでは今後さまざまなサービスを提供していく予定ですが、それらのサービスは一つのOpenIDを取得すればすべて利用できます。 また、センターのサービスに限らず、OpenIDに対応しているサイトであれば、すべてのサービスを一つのIDで利用でき、サイト毎にユーザ名やパスワードを変える必要がなくなり大変便利です。 今回は統合DBからOpenIDを取得する方法と、取得したIDを使ってサービスにログインする方法について紹介します。","DBCLS,環境設定","http://youtu.be/bY3zi0Yb1bQ","http://togotv.dbcls.jp/movie/080507openid.mov","http://doi.org/10.7875/togotv.2008.024","http://togotv.dbcls.jp/images/20080507_0.jpg","080507openid.mov","thumbnail/20080507_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"63","","togotv.2008.023","","20080502","UCSC Table Browserを使い倒す","Table Browserは、米国カリフォルニア大学サンタクルーズ校(UCSC)が開発、維持しているUCSC Genome Browser の中のコンテンツの一つです。他のコンテンツとしては以前の番組でも紹介した高速アラインメントツールBLATやGene Sorterなどがあります。Table Browserは、UCSC Genome Browserで閲覧可能なゲノムアノテーションから独自の基準でフィルターをかけ、欲しいデータだけに絞り込んで閲覧することができるサービスです。以前に統合TVの番組でも紹介したBioMartとやれることは似ています。今回の番組では、UCSC Genome Browserで提供している転写因子結合サイト(TFBS: Transcription Factor Binding Site)の情報からエストロゲン受容体α(ER-alpha)の結合サイトのみ選んだ上で、sno/miRNAの遺伝子コード領域と重なるものだけを抽出してきてそのゲノム上の領域をUCSC Genome Browserで閲覧するまでのウェブブラウザー上での解析フローを説明しています。","ゲノム,遺伝子,配列解析,UCSC,転写因子","http://youtu.be/DAleVp-W6Gk","http://togotv.dbcls.jp/movie/080502UCSCTableBrowser.mov","http://doi.org/10.7875/togotv.2008.023","http://togotv.dbcls.jp/images/20080502_0.jpg","080502UCSCTableBrowser.mov","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"62","","togotv.2008.022","","20080501","Ensembl tips 〜Ensembl Archivesを使い倒す〜","Ensemblは、 The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。 第五弾の今回は、Ensemblの古いバージョン(Ensembl Archives)を閲覧する方法について紹介しています。 Ensembl のバージョンとゲノム配列のバージョンの違いは混同しやすいですが、ゲノム配列を使ったデータベースやアノテーションはどのバージョンのゲノム配列に対応しているかが非常に重要です。DBCLSで提供しているゲノムアノテーションをDAS(Distributed Annotation System)を用いてEnsemblに追加して表示する方法については前々回の放送で紹介しましたが、その中にはマウスゲノムの一つ前のバージョンであるNCBI m36に対応づけたFANTOM3のcDNAセットがあります。このようなデータをEnsembl上で閲覧したいときなどはEnsembl Archivesを使う必要があります。","Ensembl,ゲノム,可視化,発現解析","http://youtu.be/IcvFtCn821c","-","http://doi.org/10.7875/togotv.2008.022","http://togotv.dbcls.jp/images/20080501_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"61","","togotv.2008.021","","20080425","バイオの買い物.comを使って生命科学製品の比較をする","バイオの買い物.comは、 日本語による生命科学関連製品の検索・比較サイトです。類似のサイトとして以前の番組で紹介したBiocompareがあります。まだサービスがスタートしたばかりですが、Biocompareのいくつかの問題点を解決し、利用者の利便性を追求したサイトの開発がなされています。現時点での大きな特徴として、製品検索の絞り込み条件が豊富、ユーザレビュー書き込み機能、製品価格や更新時期の表示、検索時に自動で候補を補完してくれる、などが挙げられます。","抗体","http://youtu.be/L10OTHnB47A","-","http://doi.org/10.7875/togotv.2008.021","http://togotv.dbcls.jp/images/20080425_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"60","","togotv.2008.020","","20080418","Ensembl tips 〜DBCLSで提供しているゲノムアノテーションを表示する〜","Ensemblは、 The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。第四弾の今回は、DBCLSで提供しているゲノムアノテーションをDAS(Distributed Annotation System)を用いてEnsemblに追加して表示する方法について紹介しています。今回は、ヒト、マウスの遺伝子発現を組織細胞の種類ごとに解析したデータベースであるBodyMapのESTデータをEnsembl上で表示させています。","Ensembl,ゲノム,可視化,発現解析,遺伝子","http://youtu.be/Zk9xs6d3rz4","-","http://doi.org/10.7875/togotv.2008.020","http://togotv.dbcls.jp/images/20080418_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"59","","togotv.2008.019","","20080403","統合TVをiTunesで見る","統合TVの番組はビデオキャスト (videocast)
としてiTunesで見ることができます。iTunesで統合TVを見られることの利点は一度番組をダウンロードしておけば、ネットワーク環境にいないときでもいつでも繰り返し見られることです。またお手持ちのiPodやiPhoneで番組を見ながらパソコンの操作を同時に行えます。
今回の番組では、iTunesで統合TVを見るための方法および設定の仕方について説明しています。","DBCLS,環境設定","http://youtu.be/GZ3Si8qO4AQ","-","http://doi.org/10.7875/togotv.2008.019","http://togotv.dbcls.jp/images/20080403_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"58","","togotv.2008.018","","20080324","かずさにおける新しいアノテーションの試み@AJACS東京","本日の統合TVは、2008年3月5日に科学技術振興機構(JST)にて開催されました統合データベース講習会: AJACS東京 の講演の模様をお伝えします。今回はかずさDNA研究所の岡本さんによる「かずさにおける新しいアノテーションの試み」をお送りします。かずさDNA研究所の紹介、アノテーション・キュレーションとはなんぞや?というお話から、実際にかずさDNA研究所で取り組まれているアノテーションについて紹介していただいています。","講演, AJACS","http://youtu.be/ezbMNopaqHE","http://togotv.dbcls.jp/movie/080324so.mov","http://doi.org/10.7875/togotv.2008.018","http://togotv.dbcls.jp/images/20080324_0.jpg","080324so.mov","thumbnail/20080324_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"57","","togotv.2008.017","","20080322","統合データベースへの期待@AJACS東京","本日の統合TVは、2008年3月5日に科学技術振興機構(JST)にて開催されました統合データベース講習会: AJACS東京 の講演の模様をお伝えします。今回は初!の統合DBセンター以外の方の講演、大日本住友製薬の樋口さんによる「統合データベースへの期待」をお送りします。センター主催の講演会ということで、多少のお世辞はあると思っておりますが、期待を裏切らないようがんばらにゃいかん。と感じた次第です。前半は製薬会社の視点から見たトランスクリプトミクス、プロテオミクス、メタボロミクスの現状および問題点を指摘されています。24分30秒からセンターに期待することについてお話をいただきました。","講演, AJACS","http://youtu.be/m-R9dWXU0e4","http://togotv.dbcls.jp/movie/080322JST_hg.mov","http://doi.org/10.7875/togotv.2008.017","http://togotv.dbcls.jp/images/20080322_0.jpg","080322JST_hg.mov","thumbnail/20080322_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"56","","togotv.2008.016","","20080317","UCSC Gene Sorterを使って遺伝子間の関連性を探索する","UCSC Gene Sorterは、 米国カリフォルニア大学サンタクルーズ校(UCSC)が開発、維持しているUCSC Genome Browser の中のコンテンツの一つです。他のコンテンツとしては以前の番組でも紹介した高速アラインメントツールBLATなどがあります。UCSC Gene Sorterは、興味のある遺伝子周辺もしくは遺伝子同士の関連性を、UCSC Genome Browserが持つさまざまなデータを文字通り「ソート」することによって容易に探索することができるツールです。関連性のある遺伝子をリストアップした後、それらの遺伝子に関するIDや配列をまとめて取得することができます。今回は、脂肪細胞のマーカーとして用いられることの多いFABP4(Fatty Acid Binding Protein 4)を例にして使い方を説明しています。","UCSC,遺伝子,発現解析,塩基配列","http://youtu.be/CrKtEFS0_TA","-","http://doi.org/10.7875/togotv.2008.016","http://togotv.dbcls.jp/images/20080317_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"55","","togotv.2008.015","","20080313","使い倒し系バイオインフォマティクス入門ーその3","本日の統合TVは、2008年2月28日に岩手大学にて開催されました第60回COEフォーラムの講演の模様をお伝えします。1時間半にも及ぶ長丁場だったため、3分割してお伝えしています。今回はその第3弾、統合データベースセンターの紹介です。ライフサイエンス系データベースの問題点やセンターにて提供されているサービスが紹介されています。","DBCLS,講演","http://youtu.be/-Ofla0iagCQ","http://togotv.dbcls.jp/movie/080313bono3.mov","http://doi.org/10.7875/togotv.2008.015","http://togotv.dbcls.jp/images/20080313_0.jpg","080313bono3.mov","thumbnail/20080313_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"54","","togotv.2008.014","","20080312","使い倒し系バイオインフォマティクス入門ーその2","本日の統合TVは、2008年2月28日に岩手大学にて開催されました第60回COEフォーラムの講演の模様をお伝えします。1時間半にも及ぶ長丁場だったため、3分割してお伝えしています。今回はその第2弾で、遺伝子発現解析のパートで、マイクロアレイの実験から得られるデータを解析して生物学的に解釈することを概説しています。","DBCLS,講演","http://youtu.be/anZWyRR6s3o","http://togotv.dbcls.jp/movie/080312bono2.mov","http://doi.org/10.7875/togotv.2008.014","http://togotv.dbcls.jp/images/20080312_0.jpg","080312bono2.mov","thumbnail/20080312_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"53","","togotv.2008.013","","20080311","使い倒し系バイオインフォマティクス入門ーその1","本日の統合TVは、2008年2月28日に岩手大学にて開催されました第60回COEフォーラムの講演の模様をお伝えします。1時間半にも及ぶ長丁場だったため、3分割してお伝えする予定です。今回はその第1弾です。バイオインフォマティクスとは何か?から始まり、分野の歴史、ゲノム解析について講演しております。","DBCLS,講演","http://youtu.be/BnOcdlfMclo","http://togotv.dbcls.jp/movie/080311bono1.mov","http://doi.org/10.7875/togotv.2008.013","http://togotv.dbcls.jp/images/20080311_0.jpg","080311bono1.mov","thumbnail/20080311_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"52","","togotv.2008.012","","20080310","テキスト処理して生命科学","本日の統合TVは、2008年1月25日に長浜バイオ大学にて開催されましたライフサイエンス統合データベース講演会の内容紹介第2弾です。今回は「テキスト処理して生命科学」をお届けします。なじみのある方は少ないかもしれませんが、いわゆる「テキストマイニング」と呼ばれる分野に関する発表です。近年の生命科学分野の発展に伴って文献情報が爆発的に増加しており、一人の研究者が関連する分野のすべての情報を収集するのは困難になりつつあります。今後は、いかに効率的に文献から情報を取り出すか、が重要になってくるものと思われます。今回の発表では文献処理の基礎から説明されており、テキストマイニングに興味のある方には必見の内容になっています。","DBCLS,講演,文献検索","http://youtu.be/4i203Au9WIA","http://togotv.dbcls.jp/movie/080310yy.mov","http://doi.org/10.7875/togotv.2008.012","http://togotv.dbcls.jp/images/20080310_0.jpg","080310yy.mov","thumbnail/20080310_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"51","","togotv.2008.011","","20080306","Ensembl tips 〜塩基配列のアラインメントを作成する〜","Ensemblは、 The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。第三弾の今回は、Ensemblを使って遺伝子の塩基配列を生物種間で比較し、そのアラインメントを作成・閲覧する方法について紹介しています。以前の番組で紹介した CLUSTALWで配列のアラインメントを作成すると内容的には同じですが、CLUSTALWを用いる場合は比較する塩基配列を自分で用意しなければいけません。Ensemblではその手間が省けるほか、遺伝子のプロモーター配列が存在する上流配列などを付加した上で簡単にアラインメントを作成することができます。","Ensembl,遺伝子,塩基配列,配列解析,アラインメント","http://youtu.be/_ZZgIM2r0nU","-","http://doi.org/10.7875/togotv.2008.011","http://togotv.dbcls.jp/images/20080306_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"50","","togotv.2008.010","","20080228","Biocompareを使って生命科学関連製品を横断検索する","Biocompareは、 生命科学関連製品の横断検索サイトです。メーカーや取り扱い業者を越えた検索が可能なため、目的とする製品をより広い範囲から探すことができます。製品の詳細情報が得られるだけでなく、類似製品と詳細部分まで比較して最適な選択ができるようになっているのが特徴です。特に、メーカーも種類も多い抗体の検索などに威力を発揮します。後半では、このBiocompareと学術誌Natureが共同で運営しているNatureproductsというサービスも紹介しています。このサービスでは、Natureオンライン版掲載論文の「方法」欄にある製品名およびメーカー名をクリックすると、各製品、メーカーのオンライン情報へと直接飛ぶことができ、実験で用いられた機器や試薬の入手元情報を簡単に得ることが可能です。このサービスも英語版ですが、","抗体,情報収集","http://youtu.be/oZGPwIk1mAE","-","http://doi.org/10.7875/togotv.2008.010","http://togotv.dbcls.jp/images/20080228_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"49","","togotv.2008.009","","20080221","Ensembl tips 〜配列を取得する〜","Ensemblは、The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。前回はEnsembl tipsの第一弾として配列の比較方法について紹介しましたが、今回はその第二弾としてEnsemblを使った「配列の取得」方法について紹介しています。塩基配列やcDNA配列、アミノ酸配列は研究の多くの場面で必要となりますが、今回紹介するちょっとした使い方を知るだけで自分の欲しい配列や領域をこれまで以上に簡単に取得することができるかもしれません。","Ensembl,ゲノム,遺伝子,アミノ酸,塩基配列","http://youtu.be/IwAPino40KQ","-","http://doi.org/10.7875/togotv.2008.009","http://togotv.dbcls.jp/images/20080221_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"48","","togotv.2008.008","","20080218","ライフサイエンス辞書をローカルに使い倒す MacOSX (Leopard) ことえり編","ライフサイエンス辞書(WebLSD)は、 京都大学大学院薬学研究科の金子周司先生が開発されている生命科学向けの辞書サービスで、生命科学用語について総合的で新しい語彙を収録した英日対訳およびシソーラス情報を教育研究者および学生に提供し,ひいては我が国の生命科学の発展に寄与することを目的としています。このプロジェクトでは、広範な生命科学の学問領域で使われる専門用語,対訳,用法,各種の統計情報を分析,収集するとともに,実際に電子メディアで活用することのできる電子辞書やパソコンツールを開発し,そのほとんどを無償で配布しています。文章などを書いていて、生命科学分野の専門用語にからっきし弱いパソコンのかな漢字変換システムにイライラを覚えたことのある方は多いのではないのでしょうか?前回紹介したLSDプロジェクトで制作されている各種辞書はオンラインでの提供だけではなく、自分のパソコンにダウンロード・インストールして使える辞書も提供されています。今回は、MacOSX用かな漢字変換辞書を自分のマック(厳密にはことえり)に導入して、快適な生命科学用語変換ライフを送る方法について紹介します。","辞書,環境設定","http://youtu.be/z9NnSR60y_o","http://togotv.dbcls.jp/movie/080218LSDleopard.mov","http://doi.org/10.7875/togotv.2008.008","http://togotv.dbcls.jp/images/20080218_0.jpg","080218LSDleopard.mov","thumbnail/20080218_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"47","","togotv.2008.007","","20080214","Ensembl tips 配列の比較をする","Ensemblは、 The Wellcome Trust Sanger InstituteとEBI(European Bioinformatics Institute) の共同で開発、維持されているゲノムブラウザ、ゲノムアノテーション閲覧システムのことです。以前、統合TVの番組でもEnsemblでSayaMatcherDAS やEnsemblゲノムブラウザを使って遺伝子を眺める などを紹介してきましたが、その利便性の高さの一部しかお伝えできていません。そこで数あるEnsemblの便利機能を皆さんに知ってもらうために、""Ensembl tips""というかたちでシリーズ化して今後放送していく予定です。今回は、その第一弾として多くの人が直面するであろう「配列の比較」に焦点を当てています。Ensemblでは、ヒトやマウスなど生物種間での配列のアラインメント表示はもちろんのこと、ドットプロット(dotplot; ハープロット(harplot)ともいう)による表示や当該領域の並列表示などが可能です。それらの使い方を紹介しています。","Ensembl,ゲノム,遺伝子,塩基配列,配列解析,アラインメント","http://youtu.be/dMoULhnJ-dY","-","http://doi.org/10.7875/togotv.2008.007","http://togotv.dbcls.jp/images/20080214_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"46","","togotv.2008.006","","20080207","ライフサイエンス辞書をローカルに使い倒す","ライフサイエンス辞書(WebLSD)は、 京都大学大学院薬学研究科の金子周司先生が開発されている生命科学向けの辞書サービスで、生命科学用語について総合的で新しい語彙を収録した英日対訳およびシソーラス情報を教育研究者および学生に提供し,ひいては我が国の生命科学の発展に寄与することを目的としています。このプロジェクトでは、広範な生命科学の学問領域で使われる専門用語,対訳,用法,各種の統計情報を分析,収集するとともに,実際に電子メディアで活用することのできる電子辞書やパソコンツールを開発し,そのほとんどを無償で配布しています。文章などを書いていて、生命科学分野の専門用語にからっきし弱いパソコンのかな漢字変換システムにイライラを覚えたことのある方は多いのではないのでしょうか?前回紹介したLSDプロジェクトで制作されている各種辞書はオンラインでの提供だけではなく、自分のパソコンにダウンロード・インストールして使える辞書も提供されています。今回は、Windows XP/Vista 用かな漢字変換辞書を自分のパソコンに導入して、快適な生命科学用語変換ライフを送る方法について紹介します。","辞書,環境設定","http://youtu.be/DcZKXqRGxFM","-","http://doi.org/10.7875/togotv.2008.006","http://togotv.dbcls.jp/images/20080207_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"45","","togotv.2008.005","","20080131","ライフサイエンス辞書(WebLSD)を使い倒す","ライフサイエンス辞書(WebLSD)は、 京都大学大学院薬学研究科の金子周司先生が開発されている生命科学向けの辞書サービスで、生命科学用語について総合的で新しい語彙を収録した英日対訳およびシソーラス情報を教育研究者および学生に提供し,ひいては我が国の生命科学の発展に寄与することを目的としています。このプロジェクトでは、広範な生命科学の学問領域で使われる専門用語,対訳,用法,各種の統計情報を分析,収集するとともに,実際に電子メディアで活用することのできる電子辞書やパソコンツールを開発し,そのほとんどを無償で配布しています。今回紹介するライフサイエンス辞書(WebLSD)は、学術論文の計量的な解析を行って作成した独自のデータに基づいており,その解析材料としてはPubMedで公開されている膨大な文献抄録の他,協力を得られた出版社,学会などから提供されたテキスト情報を用いられているのが最大の特徴です。","辞書,文献検索","http://youtu.be/ttsZxtqQESM","-","http://doi.org/10.7875/togotv.2008.005","http://togotv.dbcls.jp/images/20080131_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"44","","togotv.2008.004","","20080129","ライフサイエンス分野の統合DBプロジェクト","本日の統合TVは、2008年1月25日に長浜バイオ大学にて開催されましたライフサイエンス統合データベース講演会の内容を紹介します。今回はいくつか行われた発表の中から、統合DBプロジェクトの""しょこたん""こと、川本しょうこ先生による""ライフサイエンス統合データベースプロジェクト""をお届けします。手持ちのノートPCで録音したため、ノイズを拾ってしまっていますがご容赦ください。特に最初の方でハウリングをおこしてしまっています。スイマセン。びっくりしないでください。次の機会からは録音方法を改善したいと心の中でつぶやいています。","DBCLS,講演","http://youtu.be/G9Es1GrKnrw","http://togotv.dbcls.jp/movie/080129shoko.mov","http://doi.org/10.7875/togotv.2008.004","http://togotv.dbcls.jp/images/20080129_0.jpg","080129shoko.mov","thumbnail/20080129_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"43","","togotv.2008.003","","20080124","日本語バイオポータルサイトJabionを使い倒す 〜遺伝子百科編〜","Jabion(ジャビオン、と発音します)は、一般社会および専門家の両方を対象とし、生物学分野における分かりやすく正しい情報の提供を目的としたわが国初の日本語バイオポータルサイトです( 総説PDF )。このサイトは、一般向けとして生物学用語や科学ニュース等を分かりやすく解説すると同時に、専門家向けとして最新の研究動向や日本語での利用が可能な文献検索やゲノム情報などを提供しています。ちなみに、Jabionの名前の由来は、日本における生物学のトップサイトを目指す意味で、日本(Japan)と生物学(Biology)の頭文字からもじって命名されました。 前回は「PubMed日本語検索(文献検索)」の機能を紹介しましたが、今回はさらに「遺伝子百科」検索の機能について紹介します。遺伝子百科検索では、遺伝子名やその他の生物学的なキーワードを日本語で入力すると、該当するもしくは関連のある英語の専門用語に自動で変換したのちに遺伝子情報の検索を行うことができます。","遺伝子,情報収集","http://youtu.be/KUIV33UKmco","-","http://doi.org/10.7875/togotv.2008.003","http://togotv.dbcls.jp/images/20080124_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"42","","togotv.2008.002","","20080117","日本語バイオポータルサイトJabionを使い倒す 〜文献検索編〜","Jabion(ジャビオン、と発音します)は、一般社会および専門家の両方を対象とし、生物学分野における分かりやすく正しい情報の提供を目的としたわが国初の日本語バイオポータルサイトです( 総説PDF )。このサイトは、一般向けとして生物学用語や科学ニュース等を分かりやすく解説すると同時に、専門家向けとして最新の研究動向や日本語での利用が可能な文献検索やゲノム情報などを提供しています。ちなみに、Jabionの名前の由来は、日本における生物学のトップサイトを目指す意味で、日本(Japan)と生物学(Biology)の頭文字からもじって命名されました。 バイオポータルサイトというだけあって、様々なコンテンツがありますが、今回はまず「PubMed日本語検索(文献検索)」の機能を紹介します。Jabionの文献検索では、日本語キーワードを入力するだけで該当する英語の専門用語に変換したのちにPubMed検索を行うことができます。変換候補が複数ある場合には任意のものを検索対象とすることも可能です。また、検索結果は出版年順だけでなく、ジャーナルごとの被引用率などを用いて著名な文献が優先的にヒットする仕組みを採用しているのが特徴です。","文献検索,情報収集","http://youtu.be/W-yOU6yY4rY","-","http://doi.org/10.7875/togotv.2008.002","http://togotv.dbcls.jp/images/20080117_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"41","","togotv.2008.001","","20080110","WINGproを使ってバイオ分野の多様なデータベースを知る","WINGproは、文部科学省「ライフサイエンス分野の統合データベース整備事業平成18年度」の受託業務の一環として運営されているライフサイエンス分野の多種多様なデータベースの内容を収録した「データベースのデータベース」です。多種多様なデータベースが存在する現在、各データベースの内容を理解し利用できるようになることは非常に有用です。しかし、自分の関心のある分野において、どのようなデータベースが利用可能でどこにあるのか、などが分かりにくいのが現状です。WINGproでは、国内外のデータベースの情報をデータベースの構築法による分類と生物種および対象による分類で一覧することが可能です。またWINGproは、閲覧するだけでなくユーザが新規データベースに関する記事の投稿、既登録データベース関しても利用方法やTipsに関する追記することで内容の充実に参加することができるのが特徴です。","データベース","http://youtu.be/wSLvWKsRHZw","-","http://doi.org/10.7875/togotv.2008.001","http://togotv.dbcls.jp/images/20080110_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"40","","togotv.2007.040","","20071227","DBTSSを使って遺伝子の発現制御領域(プロモーター領域)を調べる","DBTSSは、最新の完全長cDNA配列、またその配列から明らかになった転写開始点およびプロモーター領域の情報を公開しているデータベースです。2007年12月現在、約15000種類のヒト遺伝子やほぼ同数のマウス遺伝子、その他のいくつかの生物種の遺伝子の転写開始点の情報を閲覧することができます。また最近のアップデートで、次世代高性能シーケンサーであるSolexaを用いてMCF7(ヒト乳癌細胞株)とHEK293(ヒト胎児腎細胞株)から得られたデータが閲覧可能であり、より詳細に遺伝子の転写開始点およびプロモーター領域を調べることができます。今回は、今話題のiPS細胞を樹立するのに必要とされる4遺伝子のうちの1つであるSOX2 (sex determining region Y box 2)を例にして説明しています。","遺伝子,配列解析,発現解析,データベース,NGS","http://youtu.be/_Spl3gR3mqc","-","http://doi.org/10.7875/togotv.2007.040","http://togotv.dbcls.jp/images/20071227_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"39","","togotv.2007.039","","20071220","Jpredを使ってタンパク質の二次構造予測をする","Jpredは、複数の相補的な二次構造予測の結果を統合して、それにマルチプルアラインメントの情報を追加することで二次構造予測を行うことができるツールで、英国の Dundee大学が提供しています。 このツールの特徴として、二次構造予測を行う前に質問配列と相同な配列を持つタンパク質が立体構造データベースにすでに存在するかを調べることが可能で、Jpredを使って二次構造予測をする必要があるかを前もって知ることができます。また、二次構造予測結果はJavaによるマルチプルアラインメントエディター/ビューワーとして有名なJalviewで表示することもできます。今回は、骨芽細胞分化の決定因子として知られるRunx2(Runt-related transcription factor-2)のアミノ酸配列を使って説明しています。","タンパク質,構造解析,ウェブツール,アラインメント","http://youtu.be/MUXLae-qBLU","-","http://doi.org/10.7875/togotv.2007.039","http://togotv.dbcls.jp/images/20071220_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"38","","togotv.2007.038","","20071219","togoTV JSBi2007","2007年12月17日にお台場の日本科学未来館で行われた、JSBi2007のプレゼンを恥ずかしげもなくあげてみました。","DBCLS,講演,English","http://youtu.be/O5pZRHbzuOM","http://togotv.dbcls.jp/movie/071219jsbi.mov","http://doi.org/10.7875/togotv.2007.038","http://togotv.dbcls.jp/images/20071219_0.jpg","071219jsbi.mov","thumbnail/20071219_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"37","","togotv.2007.037","","20071213","NCBI Entrezの総エントリー数を調べる","NCBI Entrezは皆さん「NCBIのサイト」としてよく使う検索手段かと思いますが、その中のデータベースごとにどのくらいの数のエントリーが登録されているか気になったことはありませんか?たとえば、今日現在PubMedに載っているアブストラクトの数が何個あるのだろうか、GEOに掲載されている遺伝子発現データの数はどれぐらいあるんだろう、などなど。今回の番組は、そんな疑問に答えるトリビア的な内容になっています。 ちなみにこの番組は、カテゴリーがWinXP&IE7となっていますが、実はMacで作成していたりします。","NCBI,文献検索","http://youtu.be/Or5QeVMlzMQ","-","http://doi.org/10.7875/togotv.2007.037","http://togotv.dbcls.jp/images/20071213_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"36","","togotv.2007.036","","20071122","GenePaintを使ってマウスの胚や脳における遺伝子発現の局在を調べる","GenePaintは、ドイツのマックス・プランク研究所が公開しているマウスの発生過程における遺伝子発現の局在をin situ hybridization(ISH)により調べた組織切片画像のデータベースです。登録されている切片画像はズームイン可能で、遺伝子によっては各部位における発現状況がランク付けされています。また、ある部位で特に強く発現している遺伝子や特徴的なパターンで発現している遺伝子のなどの条件で検索結果の絞込みを行うことも可能です。","遺伝子,発現解析,配列解析,データベース","http://youtu.be/Q9EDaKPcZfc","-","http://doi.org/10.7875/togotv.2007.036","http://togotv.dbcls.jp/images/20071122_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"35","","togotv.2007.035","","20071120","EMBOSS transeqで塩基配列をアミノ酸配列に変換する","transeq はEMBOSSプロジェクトで提供されている塩基配列をアミノ酸配列に変換するツールです。EMBOSSとはEuropean Molecular Biology Open Software Suiteの略で、200を越えるアプリケーションから構成されている統合パッケージです。無料で利用できます。","塩基配列,アミノ酸,配列解析,EMBOSS","http://youtu.be/EE6N39cbu2U","http://togotv.dbcls.jp/movie/071120transeq.mov","http://doi.org/10.7875/togotv.2007.035","http://togotv.dbcls.jp/images/20071120_0.jpg","071120transeq.mov","thumbnail/20071120_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"34","","togotv.2007.034","","20071115","InterProScanを使ってアミノ酸配列の特徴を検索する","InterProScanは、アミノ酸配列の特徴を複数のデータベースを対象にまとめて検索することによって、問い合わせた配列が属するタンパク質ファミリーやドメイン構成およびモチーフなどの特徴を効率的に推測することができるツールです。興味のあるタンパク質の機能が未知であるとき、配列解析によって機能注釈を行いたいといった場面で、配列相同性検索と同様によく用いられるのがモチーフ・ドメイン検索です。InterProScanはそういった場面で用いられる最も代表的なツールです。ムービーではサンプルデータとして、ES細胞の分化多能性を支えるHomeoboxタンパク質であるNanogのアミノ酸配列を使って説明しています。","配列解析,アミノ酸,タンパク質,遺伝子","http://youtu.be/Fh5DiY7h30k","-","http://doi.org/10.7875/togotv.2007.034","http://togotv.dbcls.jp/images/20071115_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"33","","togotv.2007.033","","20071108","GO Terms Classifications Counterを使ってマイクロアレイデータを可視化する","GO Terms Classifications Counterは、マイクロアレイ実験などで得られた発現変動のあった遺伝子群に付けられたGO termのフラットファイルをuploadすると分類して可視化(集計表とパイチャート)してくれるツールです。このツールを使うことで、発現変動のあった遺伝子群の特徴を概観することができます。ムービーではサンプルデータとして、NCBI GEOより取得した公共の遺伝子発現データ(GSE1657:Adipocyte Differentiation[Homo sapiens])を用いて、脂肪細胞の分化過程で発現増加した上位100個の遺伝子群のGO IDのリストを使って説明しています。","遺伝子,発現解析,可視化","http://youtu.be/mP_fEypmaHg","-","http://doi.org/10.7875/togotv.2007.033","http://togotv.dbcls.jp/images/20071108_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"32","","togotv.2007.032","","20071107","NEBcutterでDNA配列を切り倒す!","NEBcutter はNEW ENGLAND BioLabs Inc. 社が提供する、DNA配列を切断する制限酵素について調べるツールです。配列を入力して、その配列を切断できる酵素(またはその配列を切らない酵素)を探すことができます。また、配列を制限酵素で処理したときに生成する断片をシミュレートすることができ、さらにアガロースゲル電気泳動したときの泳動位置も表示することが可能です。DNA配列をベクターにクローニングしたり、切り貼りしたりするときに大変便利なツールです。企業によって提供されているツールですが、なんと無料です!タダです!","遺伝子,塩基配列,ウェブツール","http://youtu.be/SWuHRsEPw7o","http://togotv.dbcls.jp/movie/071107NEBcutter.mov","http://doi.org/10.7875/togotv.2007.032","http://togotv.dbcls.jp/images/20071107_0.jpg","071107NEBcutter.mov","thumbnail/20071107_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"31","","togotv.2007.031","","20071101","InfoPubMedを使って遺伝子・タンパク質間相互作用情報を調べる","Info-PubMed(インフォパブメドと読みます)は、東京大学辻井研究室が提供している遺伝子・タンパク質間相互作用情報を検索するツールです。 Info-PubMedでは、PubMedに収録された文献情報(アブストラクト)からキーワードの共起やその関係性を機械的に抽出することによって得られた遺伝子・タンパク質間の相互作用情報を検索することができます。画面の操作はドラッグ&ドロップで簡単に行うことが可能で、流れるように操作できるのが特徴です。","遺伝子,タンパク質,文献検索","http://youtu.be/ydDgB3o-3ZA","-","http://doi.org/10.7875/togotv.2007.031","http://togotv.dbcls.jp/images/20071101_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"30","","togotv.2007.030","","20071025","Human Protein Atlasを使って組織・細胞におけるタンパク質発現情報を調べる","Human Protein Atlas(ヒューマンプロテインアトラスと読みます)は、スウェーデンの研究グループが提供しているヒトのタンパク質発現情報データベースです。 さまざまなヒトの組織やガン細胞、細胞株におけるタンパク質の発現情報および局在を、特異的抗体を用いて得られた免疫組織化学染色写真をもとに調べることができます。2007年10月25日現在では3,015個の抗体および2,827,440枚の染色写真が閲覧可能です。また、まだ数は少ないですが免疫蛍光染色の写真も追加されています。 タンパク質の特異的抗体を用いた実験をする前に一度このデータベースで各組織・細胞株での発現状況を調べてみたり、2007年8月16日に放送しましたGNF SymAtlasと比較してmRNAとタンパク質の発現状況の違いを調べたりすると興味深い知見が得られるかもしれません。","タンパク質,発現解析,データベース","http://youtu.be/h0T6BjmerBg","-","http://doi.org/10.7875/togotv.2007.030","http://togotv.dbcls.jp/images/20071025_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"29","","togotv.2007.029","","20071018","オンライン人体地図サービス「アナトモグラフィー」を使い倒す","アナトモグラフィーは統合ホームページで提供されているツールの一つで、器官別の発現解析データ、疾患別症状分布などの手持ちのデータを人体の3D画像にマッピングして俯瞰することができます。人体地図にデータをマップすることで、""体に関する情報""どうしの関係を視覚的・直感的に理解したい場面で真価を発揮します。 現在も改良が続けられていますが、現段階での使い方および注意点について説明します。","辞書,発現解析,可視化,DBCLS","http://youtu.be/lrFChseII7w","-","http://doi.org/10.7875/togotv.2007.029","http://togotv.dbcls.jp/images/20071018_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"28","","togotv.2007.028","","20071016","PSIBLASTで類縁の配列を調べ倒す","PSI-BLASTは、BLAST検索の結果を利用して検索を繰り返して行くことで、配列自体の類似度が低くくても機能的に関連している配列を見つけ出すことができる非常に強力な検索方法です。機能未知のアミノ酸配列の機能を推定するために、BLAST検索がよく使われます。しかし、ヒットしてきた配列に有用なアノテーションが付いておらず、機能の推定が難しい場合があります。こんなときに、PSI-BLASTを試してみましょう。PSI-BLASTではBLAST検索でヒットしてきた類似配列から、部位特異的スコア行列(PSSM: Position Specific Scoring Matrix)を作成して類縁のアミノ酸配列を検索します。BLASTでヒットしてきた配列の""特徴""を使ってBLAST検索を行うため、配列自体の類似性が低くても、配列の特徴が類似しているアミノ酸配列を得ることができます。このようにして得られた遠縁のアミノ酸から有用な情報が得られることもあります。","NCBI,アミノ酸,配列解析","http://youtu.be/tFaUyaEtSD0","http://togotv.dbcls.jp/movie/071016psi-blast.mov","http://doi.org/10.7875/togotv.2007.028","http://togotv.dbcls.jp/images/20071016_0.jpg","071016psi-blast.mov","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"27","","togotv.2007.027","","20071011","Webブラウザの検索バーを生命科学向けにカスタマイズする","何か検索したい時にWebブラウザの検索バーを使う人が多いのではないでしょうか?今回はIE7とFirefoxを例にして、この検索バーを少しカスタマイズするだけで、生命科学向けの検索がグッと簡単になる方法について説明します。","環境設定","http://youtu.be/LtvjISkskIc","","http://doi.org/10.7875/togotv.2007.027","http://togotv.dbcls.jp/images/20071011_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"26","","togotv.2007.026","","20071005","「統合ホームページ」でデータベース横断検索を使いこなす","本日2007年10月5日にDBCLSが提供するライフサイエンスデータベースのポータルサイト「統合ホームページ」が公開されました。 今回はその公開を記念して数あるコンテンツのうちからライフサイエンスデータベース横断検索を取り上げ、その使い方および注意点について簡単に説明します。","DBCLS,データベース","http://youtu.be/GvRy9uUXrbE","","http://doi.org/10.7875/togotv.2007.026","http://togotv.dbcls.jp/images/20071005_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"25","","togotv.2007.025","","20071004","PubMedの検索結果を定点観測する その2","PubMed(「パブメド」と発音します)は、米国のNCBIから提供されている生物医学文献データベースです。 2007年9月20日放送の「PubMedの検索結果を定点観測する その1」の続編として、取得したRSSフィードが更新された場合の見方について説明します。さらに、おまけとしてwebブラウザ Firefoxを使った場合のRSSフィードの取得・購読の仕方についても説明しています。","文献検索,環境設定,NCBI","http://youtu.be/xzY4uC8JGBY","","http://doi.org/10.7875/togotv.2007.025","http://togotv.dbcls.jp/images/20071004_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"24","","togotv.2007.024","","20070927","遺伝子発現パターンが似ている遺伝子群のゲノム上流配列を一気に取得する","今回は、数回前の番組「Ensemblゲノムブラウザを使って遺伝子を眺める」(2007年9月12日放送)の最後の「そこでBioMartですよ!」を受ける形で、望みの配列情報を取得する方法を紹介しております。ただ、それだけでは生物学的におもしろくないので、以前に紹介したGNF Symatlas(2007年8月16日放送)を用いて脂肪細胞のマーカーとして用いられることの多いFABP4(Fatty Acid Binding Protein4)の発現パターン(発現プロファイル、発現プロフィールも同じ)を調べ、それと似た発現パターン(=脂肪細胞で発現が高い)を持つ遺伝子をリストアップします。それらの遺伝子のゲノム上の上流配列をEnsemblのBioMartを用いて一気に取得する方法を紹介します。","データベース,発現解析,塩基配列,ゲノム","http://youtu.be/QTdSaC9G2CU","http://togotv.dbcls.jp/movie/070927exprsim_promseq.mov","http://doi.org/10.7875/togotv.2007.024","http://togotv.dbcls.jp/images/20070927_0.jpg","070927exprsim_promseq.mov","thumbnail/20070927_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"23","","togotv.2007.023","","20070926","BLAST検索でヒットしたエントリ群のmulti fastaファイルを取得する","ここでは、BLAST検索の結果で得られた、問い合わせ配列と類似性のある配列群の配列をマルチファスタフォーマットで取得する方法について説明しています。この方法を使うことで、配列を1個1個コピー&ペーストすることなく、まとめて配列を取得することができます。ムービー中で使用した問い合わせ""P19526""はswissprot (現UniProt)に収録されているhumanのフコース転移酵素Fucosyltransferase1のエントリです。自分の注目する配列と関連した配列群を集めることで、マルチプルアラインメントや系統樹の作成など、更なる解析に応用することができます。ここでは、BLAST検索の結果から配列を集めていますが、NCBIのサイトではBLASTの結果でなくても配列IDのリストを作ればmulti fastaファイルを得ることが可能です。オマケとして、multi fastaファイルから注釈行のみを取り出す方法やエントリIDのリストを取得する方法を、Mac OSXに標準でインストールされている「ターミナル」を使って説明しています。","NCBI,アミノ酸,配列解析","http://youtu.be/RhTmgpOIUIw","http://togotv.dbcls.jp/movie/070926get_multi_fasta.mov","http://doi.org/10.7875/togotv.2007.023","http://togotv.dbcls.jp/images/20070926_0.jpg","070926get_multi_fasta.mov","thumbnail/20070926_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"22","","togotv.2007.022","","20070920","PubMedの検索結果を定点観測する その1","PubMed(「パブメド」と発音します)は、米国のNCBIから提供されている生物医学文献データベースです。 PubMedで自分の興味あるキーワード等を検索し、関係のありそうな論文の情報収集を日々行っているという人も多いと思います。ここではPubmedの検索結果のRSSフィードを取得し、新着情報のみをすばやく、効率的に得る方法について説明します。","NCBI,文献検索,環境設定,情報収集","http://youtu.be/5K8-xnkcClo","-","http://doi.org/10.7875/togotv.2007.022","http://togotv.dbcls.jp/images/20070920_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"21","","togotv.2007.021","","20070914","ウイルスの持ち出した宿主の遺伝子配列がコードされている領域をアミノ酸配列レベルでゲノム中から探し当てる","ラウス肉腫ウイルス(Rous sarcoma virus)は、ニワトリで発見された腫瘍形成に関わっている腫瘍ウイルスで、1911年にペイトン・ラウスによって発見されました。2本鎖RNAをゲノムにもつレトロウイルスで、ガンの原因となる遺伝子はsarcomaからsrcと名付けられましたが、実は宿主の細胞にもほとんど同じ遺伝子配列が存在していることが発見されました。ウイルス由来のsrc遺伝子はv-src、細胞由来のものはc-srcと記述されています。 今回はそのv-srcのタンパク質配列を、ラウス肉腫ウイルスのゲノム配列を検索するところから始めて取得し、それをすでに解読されているニワトリのゲノム配列に対してアミノ酸配列のままBLAT検索にかけc-srcがコードされているゲノム上の領域を探し当てます。さらにその2種類のsrcのアラインメントを見ることでsrc遺伝子の遺伝子情報をウイルスがニワトリゲノムから持ち出してから現在に至るまでどこの場所に変異が入ったか、知ることが出来ます。最後に、その場所をUCSC Genome Browserで確認します(なお、UCSC Genome Browserの日本語による解説をkumaさんがここから公開されています)。","UCSC,アミノ酸,塩基配列,配列解析,ゲノム,アラインメント","http://youtu.be/z5Hey_5Nu1s","http://togotv.dbcls.jp/movie/070914tBLATn.mov","http://doi.org/10.7875/togotv.2007.021","http://togotv.dbcls.jp/images/20070914_0.jpg","070914tBLATn.mov","thumbnail/20070914_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"20","","togotv.2007.020","","20070913","MGIの使い方その2 発現情報を調べる","MGI(Mouse Genome Informatics; 「エムジーアイ」と普通に発音します)は米国メーン州にあるThe Jackson Laboratory(ジャクソン研究所)が提供しているマウスに関する遺伝子、ゲノム、生物学的な情報を提供する統合データベースです。 ここではヒトの脂肪代謝関連遺伝子peroxisome proliferator-activated receptor (PPAR) alphaを例にして、MGIに登録されているさまざまな実験条件で得られた発現情報を閲覧する方法を紹介します。","遺伝子,発現解析,データベース","http://youtu.be/ZIH3gKSSMhM","-","http://doi.org/10.7875/togotv.2007.020","http://togotv.dbcls.jp/images/20070913_0.jpg","","thumbnail/20070913_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"19","","togotv.2007.019","","20070912","Ensemblゲノムブラウザを使って遺伝子を眺める","Ensembl では、ゲノム配列上の遺伝子や各種マーカー、SNPなどを眺めることができます。ある遺伝子がゲノム配列上の「どこ」にあって、その周辺に「何」があるのか調べることは、地図から目的の場所を調べるのと似ています。ここでは、ゲノムブラウザの使い方の一つ(ゲノムブラウザは色々な使い方ができます!)を、Googleマップと対比させて説明しています。","Ensembl,ゲノム,遺伝子","http://youtu.be/YkQ6MbUzBYo","http://togotv.dbcls.jp/movie/070912gb1.mov","http://doi.org/10.7875/togotv.2007.019","http://togotv.dbcls.jp/images/20070912_0.jpg","070912gb1.mov","thumbnail/20070912_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"18","","togotv.2007.018","","20070907","MGIの使い方その1 ノックアウトマウス情報の有無を調べる","MGI(Mouse Genome Informatics; 「エムジーアイ」と普通に発音します)は米国メーン州にあるThe Jackson Laboratory(ジャクソン研究所)が提供しているマウスに関する遺伝子、ゲノム、生物学的な情報を提供する統合データベースです。 ここではヒトの脂肪代謝関連遺伝子peroxisome proliferator-activated receptor (PPAR) alphaを例にして、MGIで閲覧することのできる主な情報と、特にノックアウトマウスの表現型を検索する方法を紹介します。","遺伝子,発現解析,データベース","http://youtu.be/QTtWTeb7ByQ","-","http://doi.org/10.7875/togotv.2007.018","http://togotv.dbcls.jp/images/20070907_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"17","","togotv.2007.017","","20070906","siDirectでsiRNAを設計する","siRNA(「エスアイアールエヌエー」と読みます;small interfering RNAの略です)を用いてRNAi(RNA interference)を起こして目的のmRNAをノックダウンすることが哺乳類に対してもできることが最近わかってきました。siDirect(「エスアイダイレクト」と読みます)はそのsiRNAをデザインする日本発のツールです。インターフェースや説明書きがすべて英語となっており日本語化されていないので素人にはなじみにくいかもしれませんが、設計したsiRNAが他の遺伝子に影響を及ぼさないか他の遺伝子配列にたいする配列類似性検索も同時に行うことができ、便利なツールとなっています。ただ、そのsiRNAが実際に効いたかどうか等の実験結果は反映されていないのが残念な点です(効いたかどうか確かめたもの(verified)を集めたsiRNAがライブラリという形で売られていますが自分の目的とする細胞(cell line)や組織で効くかどうかはまた別問題です)。","塩基配列,ウェブツール","http://youtu.be/cTgufTytLfI","http://togotv.dbcls.jp/movie/070906siDirect.mov","http://doi.org/10.7875/togotv.2007.017","http://togotv.dbcls.jp/images/20070906_0.jpg","070906siDirect.mov","thumbnail/20070906_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"16","","togotv.2007.016","","20070831","OReFiLを使ってライフサイエンス分野のwebリソースを検索する","OReFiL (an Online Resource Finder for Lifesciences, 「オレフィル」と読みます)は、ライフサイエンス分野のパブリッシュされた文献に記載されているウェブリソース(データベースやツールなど)を検索します。 近年の分子生物学の発展によって大量のデータが生産され、それに付随する形でデータベースやツールなどが数多く作成されており、インターネットを通じて提供されています。 多くのリソースが提供されている状態は選択肢が多いという点では歓迎すべきことですが、逆に情報が氾濫し「何を使えばよいのかわからない」、「リソースがどこにあるのかわからない」、「そもそもリソースがあるかどうかもわからない」という事態を招いてしまっています。 Googleなどの検索エンジンは、ウェブ上のあらゆる情報を収集しているため、ノイズとなる情報も多く、必ずしも目的のリソースにアクセスすることが難しいのが現状です。 そこで、OReFiLではMEDLINEのアブストラクトやオープンアクセスの文献などの査読を経た情報からウェブ上のリソースを収集して、検索できる仕組みを提供しています。収集したテキストの情報を解析しているため、検索の際に問い合わせに対して適切な結果を返してくれます。そのため、容易に目的のリソースにアクセスすることができます。","文献検索,DBCLS,情報収集","http://youtu.be/gF1wyc9SF8Q","http://togotv.dbcls.jp/movie/070831OReFil.mov","http://doi.org/10.7875/togotv.2007.016","http://togotv.dbcls.jp/images/20070831_0.jpg","070831OReFil.mov","thumbnail/20070831_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"15","","togotv.2007.015","","20070830","FANTOM_CAGEデータによる転写開始点をEnsemblで可視化する","理化学研究所 横浜研究所 ゲノム科学総合研究センター遺伝子構造・機能研究グループによるCAGE(Cap Analysis Gene Expression; 「ケージ」と発音します)のデータはその数が非常に多いため、その利用は困難となってしまっていることが多いようです。最近、Ensembl Genome BrowserのDAS sourceの一つに、このCAGEタグのゲノムへのマッピングデータが追加されました(ヒトとマウス)。それを用いて興味あるゲノム領域(たとえば注目している遺伝子のプロモーター領域など)にCAGEタグがどれぐらいマッピングされているかをウェブ上で簡単に調べることができるようになっています。ここではヒトのPPARG(Peroxisome Proliferator-Activated Receptor gamma)を例に、その5'領域にマッピングされたCAGEタグの位置をEnsembl Genome Browser上で調べる手順を解説し、現状での問題点を指摘しています。","Ensembl,可視化,ゲノム,発現解析,CAGE,FANTOM","http://youtu.be/hES78jyjKr0","http://togotv.dbcls.jp/movie/070830EnsemblFANTOMCAGE.mov","http://doi.org/10.7875/togotv.2007.015","http://togotv.dbcls.jp/images/20070830_0.jpg","070830EnsemblFANTOMCAGE.mov","thumbnail/20070830_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"14","","togotv.2007.014","","20070829","高速アラインメントツールBLATをプライマー設計支援ツールとして使い倒す","BLAT(The BLAST-like Alignment Tool)は米国カリフォルニア大学サンタクルーズ校(UCSC)にて開発された高速なアラインメントツールで、主に質問配列がゲノム配列中のどの部分にヒットするか(ゲノムランディング(genome landing)といいます)探索するのに用いられています。ここではヒトの脂肪代謝遺伝子peroxisome proliferator-activated receptor (PPAR) gammaの塩基配列をサンプル配列として、BLATをプライマー設計支援ツールとして使い倒す方法を紹介します。","UCSC,ウェブツール,ゲノム,塩基配列,配列解析,アラインメント","http://youtu.be/4cvuBFbNi8A","-","http://doi.org/10.7875/togotv.2007.014","http://togotv.dbcls.jp/images/20070829_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"13","","togotv.2007.013","","20070824","Primer3でPCR用のプライマーを設計する。","Primer3はPCR用のプライマーを設計するためのツールです。PCR実験成功の可否は、プライマー設計によるところが大きいですが、本ツールはWebブラウザ上で、実験条件に合った様々なパラメータを考慮しながらプライマー設計を行うことが可能です。ここでは例としてヒトの脂肪代謝遺伝子peroxisome proliferator-activated receptor(PPAR) gammaの塩基配列をサンプル配列として、設定可能なパラメータ項目の説明を交えながらPrimer3の使い方を説明します。","塩基配列,ウェブツール","http://youtu.be/aDtyjx95L-A","-","http://doi.org/10.7875/togotv.2007.013","http://togotv.dbcls.jp/images/20070824_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"12","","togotv.2007.012","","20070816","GNF SymAtlasで各臓器における遺伝子発現プロファイルを調べる","GNF SymAtlas(「ジーエヌエフ シムアトラス」と読みます)はAffymetrix社製のマイクロアレイであるGeneChipを用いたヒト、マウス、ラットのさまざまな臓器やcell line(セルライン)における遺伝子発現プロファイルのデータベースです。GNF SymAtlasは2008年にアップデートされて、現在はBioGPS(「バイオジーピーエス」と読みます)になっています。BioGPSの紹介番組はこちらです。","遺伝子,発現解析,データベース","http://youtu.be/dFry4YpWF1U","-","http://doi.org/10.7875/togotv.2007.012","http://togotv.dbcls.jp/images/20070816_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"11","","togotv.2007.011","","20070809","CLUSTALWで配列のアラインメントを作成する","ClustalW(「クラスタルダブル」と読みます)は複数の塩基配列やアミノ酸配列をできるかぎり一致するように並べる(多重(マルチプル)アラインメント)ツールです。比較的簡単な操作で系統樹作成なども行うことができます。ここでは、例としてヒト、マウス、ブタの各生物種における脂肪代謝遺伝子peroxisome proliferator-activated receptor(PPAR)ファミリーの塩基配列をサンプル配列として多重アラインメントを行い、系統樹を作成する方法を説明します。","配列解析,塩基配列,系統樹,アラインメント","http://youtu.be/cIUNqlQsBqk","-","http://doi.org/10.7875/togotv.2007.011","http://togotv.dbcls.jp/images/20070809_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"10","","togotv.2007.010","","20070808","NCBI BLASTを使って機能未知塩基配列の機能を推定する","NCBI BLAST(えぬしーびーあいブラストと発音します)は、問い合わせ配列に類似した配列をデータベース中から検索するツールです。 BLASTの名称はBasic Local Alignment Search Toolの頭文字に由来しており、配列解析には欠かせない、基本的なツールです。ここでは、サンプル配列の塩基配列を問い合わせ配列として、nr/ntデータベース(冗長性を排した塩基配列データベース)に対して検索を行い、機能を推定する使い方を説明します。 もちろん、塩基配列だけではなく、アミノ酸配列に対しても使えます。","NCBI,塩基配列,配列解析","http://youtu.be/RaI8gWye79U","http://togotv.dbcls.jp/movie/070808blast.mov","http://doi.org/10.7875/togotv.2007.010","http://togotv.dbcls.jp/images/20070808_0.jpg","070808blast.mov","thumbnail/20070808_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"9","","togotv.2007.009","","20070807","なぜこのような活動を始めたのか","","DBCLS","http://youtu.be/RaI8gWye79U","http://togotv.dbcls.jp/movie/070807GoogleJ_UniGene.mov","http://doi.org/10.7875/togotv.2007.009","http://togotv.dbcls.jp/images/20070807_0.jpg","070807GoogleJ_UniGene.mov","thumbnail/20070807_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"8","","togotv.2007.008","","20070806","BiomartでIDの対応表を作成する","Ensemblのbiomartを用いて各種IDの対応表をウェブ上で簡単に作ることができます。 ここではマウスを例に、Ensembl Gene IDに対応するRefseq ID、EntrezGene IDとAffymetrix mouse430 2のIDを対応づける表を作成し、タブ区切りテキストにしてダウンロードしてくる手順を解説しています。","塩基配列,発現解析,ゲノム,データベース","http://youtu.be/hu1Sr1kKWUI","http://togotv.dbcls.jp/movie/070806Biomart1a.mov","http://doi.org/10.7875/togotv.2007.008","http://togotv.dbcls.jp/images/20070806_0.jpg","070806Biomart1a.mov","thumbnail/20070806_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"7","update","togotv.2007.007","","20070803","EnsemblでSayaMatcherDAS","Ensembl(「アンサンブル」と読みます)はゲノムアノテーションを閲覧するサイトです。デフォルトで表示されているゲノムアノテーション以外に自分の好みのアノテーションをDAS(Distributed Annotation System)を用いて追加することが出来ます。その実際をSayaMatcherで提供されているDASサービスを追加することで転写因子結合配列E-boxをEnsembl上に表示する手順を説明しています。","Ensembl,塩基配列,ゲノム,可視化,転写因子","http://youtu.be/491LZlQtILA","http://togotv.dbcls.jp/movie/070803EnsemblDAS.mov","http://doi.org/10.7875/togotv.2007.007","http://togotv.dbcls.jp/images/20070803_0.jpg","070803EnsemblDAS.mov","thumbnail/20070803_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"6","","togotv.2007.006","","20070802","Entrezを使って配列を検索する","Entrezは、NCBIで提供されているさまざまなデータベースを横断的に検索するための検索エンジンです。 ここでは、ヒトのheat shock factorのアミノ酸配列を取得する方法を通じて、Entrezの使い方の一例を示します。","NCBI,遺伝子,アミノ酸,配列解析","http://youtu.be/FPjy7ut2tbc","-","http://doi.org/10.7875/togotv.2007.006","http://togotv.dbcls.jp/images/20070802_0.jpg","","thumbnail/20070802_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"5","","togotv.2007.005","","20070801","EnsemblでSayaMatcherDAS","Ensemblはゲノムアノテーションを閲覧するサイトです。デフォルトで表示されるアノテーション以外に自分の好みのアノテーションをDAS(Distributed Annotation System)を用いて追加することが出来ます。その実際をSayaMatcherで提供されているDASサービスを追加することで転写因子結合配列E-boxをゲノム上に表示する手順を説明しています。","Ensembl,可視化,塩基配列,ゲノム,転写因子","http://youtu.be/491LZlQtILA","http://togotv.dbcls.jp/movie/070801entrez1.mov","http://doi.org/10.7875/togotv.2007.005","http://togotv.dbcls.jp/images/20070801_0.jpg","070801entrez1.mov","thumbnail/20070801_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"4","","togotv.2007.004","","20070731","GOLD Genomes OnLine Database v 2.0","GOLDデータベースはゲノム塩基配列解読プロジェクトを集めたデータベースです。既に解読が終了したゲノムプロジェクトや、現在進行中のゲノムプロジェクトについて調べることができます。塩基配列や、発表された論文、解析を実施している機関などへのリンクがあります。","ゲノム,データベース","http://youtu.be/7XEHeqCAmo8","http://togotv.dbcls.jp/movie/070727gold4.mov","http://doi.org/10.7875/togotv.2007.004","http://togotv.dbcls.jp/images/20070731_0.jpg","070727gold4.mov","thumbnail/20070731_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"3","","togotv.2007.003","","20070726","NCBI GEO 字幕入り版","遺伝子発現情報のデータベース(レポジトリ)のNCBI Gene Expression Omnibus(GEO)の使い方。","データベース,発現解析,NCBI,GEO","http://youtu.be/dVYtQz8Vk1c","-","http://doi.org/10.7875/togotv.2007.003","http://togotv.dbcls.jp/images/20070726_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"2","","togotv.2007.002","","20070723","reactome release 21 字幕入り版","reactomeは、ヒトを中心としたパスウェイ情報のデータベースです。代謝パスウェイだけでなく、シグナルパスウェイなども収録されているのが特徴です。ここでは、マイクロアレイ時系列発現データがあった場合に、発現情報をパスウェイ上でアニメーション表示する方法について説明しています。","データベース,可視化,発現解析,パスウェイ解析,化合物","http://youtu.be/YuqcTrMF36A","http://togotv.dbcls.jp/movie/070723reactome2.mov","http://doi.org/10.7875/togotv.2007.002","http://togotv.dbcls.jp/images/20070723_0.jpg","070723reactome2.mov","thumbnail/20070723_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""
"1","","togotv.2007.001","","20070709","BioMartその弐","Ensemblのbiomartを用いて、全ての遺伝子の転写開始点から上流の配列1kbをマウスゲノムから抽出してFASTA形式で得る。","塩基配列,発現解析,ゲノム,データベース","http://youtu.be/YuqcTrMF36A","-","http://doi.org/10.7875/togotv.2007.001","http://togotv.dbcls.jp/images/20070709_0.jpg","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","","",""