SKIP Stemcell Database
2017/03/13Web Site: https://www.skip.med.keio.ac.jp/SKIPSearch/top?lang=en
HTTPS Site: https://dbarchive.biosciencedbc.jp/data/skip/
The database that aggregates information on human stem cell samples owned by each research institution.
README Content
1. Database Component
2. Data Description
2.1 README
| Data name | README |
|---|---|
| Description of data contents | HTML file to describe "SKIP Stemcell Database" data. |
| File | README_e.html (English) |
2.2 Stemcell Information
| Data name | Stemcell Information |
|---|---|
| Description of data contents | Stemcell information from RIKEN BRC, NIBIO, Coriell, ATCC and many laboratories |
| File | skip_stemcell_data.ttl.zip (190 KB) |
Data items are the following:
| Data item | Description |
|---|---|
| SKIP ID | SKIP ID |
| Organism(En) | Organism of this cell (English) |
| Organism(Ja) | Organism of this cell (Japanese) |
| Cell Type(En) | Cell Type (English) |
| Cell Type(Ja) | Cell Type (Japanese) |
| Cell Tissue(En) | Cell Tissue (English) |
| Cell Tissue(Ja) | Cell Tissue (Japanese) |
| Cell Origin | Status of cell origin |
| Cell Name 1(En) | Cell Name 1 (English) |
| Cell Name 1(Ja) | Cell Name 1 (Japanese) |
| Cell Name 2(En) | Cell Name 2 (English) |
| Cell Name 2(Ja) | Cell Name 2 (Japanese) |
| Disease Name 1(Ja) | Disease Name 1 (Japanese) |
| ICD Code 1 | ICD Code 1 |
| Disease Name 1(En) | Disease Name 1 (English) |
| OMIM1 | OMIM ID 1 |
| Disease Name 2(Ja) | Disease Name 2 (Japanese) |
| ICD Code 2 | ICD Code 2 |
| Disease Name 2(En) | Disease Name 2 (English) |
| OMIM 2 | OMIM ID 2 |
| Disease Name 3(Ja) | Disease Name 3 (Japanese) |
| ICD Code 3 | ICD Code 3 |
| Disease Name 3(En) | Disease Name 3 (English) |
| OMIM 3 | OMIM ID 3 |
| Age | Age of donor |
| Age Range | Age range of donor |
| Sex | Sex of donor |
| Race(En) | Race of donor (English) |
| Race(Ja) | Race of donor (Japanese) |
| Genetic Diagnosis | Genetic Diagnosis or none |
| Not Detected | Not Detected or detected in genetic diagnosis |
| Description(En) | Description of this cell (English) |
| Description(Ja) | Description of this cell (Japanese) |
| Cell Morphology | Cell Morphology |
| Grade | Cell provided by (research or clinic) |
| Vector | Vector to cultivate this cell |
| Transgene | Transgene to this cell |
| Adhesiveness | Cell adhesiveness |
| Feeder | Feeder cell is used or not |
| Feeder Cell | Feeder cell name |
| Medium | Medium to cultivate this cell |
| Genome Editing | Genome Editing method in the cultivation |
| CO2 | CO2 concentration in the cultivation |
| Mycoplasma | Detection of Contaminants Mycoplasma or none |
| Detection of Contaminants Mycoplasma | Method of Detection of Contaminants Mycoplasma |
| Pluripotent Markers | Pluripotent Markers Assay or none |
| Pluripotent Markers Assay | Method of Pluripotent Markers Assay |
| in vitro Differentiation | in vitro Differentiation Assay or none |
| in vitro Differentiation Assay | Method of in vitro Differentiation Assay |
| in vivo Differentiation | in vivo Differentiation Assay or none |
| in vivo Differentiation Assay | Method of in vivo Differentiation Assay |
| Other 1 Assay | Other 1 Assay or none |
| Other 1 Assay Method | Method of Other 1 Assay |
| Other 2 Assay | Other 2 Assay or none |
| Other 2 Assay Method | Method of Other 2 Assay |
| Other 3 Assay | Other 3 Assay or none |
| Other 3 Assay Method | Method of Other 3 Assay |
| Karyotype | Karyotype Assay or none |
| Karyotype Assay | Method of Karyotype Assay |
| Remaining Vector Detection | Remaining Vector Detection Assay or none |
| Remaining Vector Detection Assay | Method of Remaining Vector Detection Assay |
| STR | STR analysis or none |
| HLA | HLA typing or none |
| Stem Cell Transcriptome analysis | Stem Cell Transcriptome analysis or none |
| Stem Cell Transcriptome analysis Assay | Stem Cell Transcriptome analysis Assay or none |
| Author Name(En) | Author Name (English) |
| Author Name(Ja) | Author Name (Japanese) |
| Author Organization(En) | Author Organization (English) |
| Author Organization(Ja) | Author Organization (Japanese) |
| Author Contact Email | Author Contact Email |
| PI Organization(En) | Principal Investigator (PI) Organization (English) |
| PI Organization(Ja) | PI Organization (Japanese) |
| PI Name(En) | PI Name (English) |
| PI Name(Ja) | PI Name (Japanese) |
| PI Contact Email | PI Contact Email |
| Availability | Stemcell Availability |
| Provider Organization(En) | Provider Organization (English) |
| Provider Organization(Ja) | Provider Organization (Japanese) |
| Provider Email | Provider Email |
| Provider URL | Provider URL |
| Ethical Statement(En) | Ethical Statement (English) |
| Ethical Statement(Ja) | Ethical Statement (Japanese) |
| Terms of Use(En) | Terms of Use (English) |
| Terms of Use(Ja) | Terms of Use (Japanese) |
| PubMed ID | PubMed ID of article (reference) |
| DOI | DOI (Digital Object Identifier) of article |
| Title | Article Title |
| Authors | Article Authors |
| Journal | Journal which contains the article |
| Year | Publishing Year of the journal |
| Volume | Volume of the journal |
| Issue | Issue of the journal |
| Pages | Pages in the journal |
| URL | Article URL |
| Free input | Others about the article |
| Note | Comment |
3. License
Last updated : 2017/03/13
You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.
The license for this database is specified in the Creative Commons Attribution-Share Alike 4.0 International.
If you use data from this database, please be sure attribute this database as follows: "SKIP Stemcell Database © Kenjiro KOSAKI (Center for Medical Genetics, School of medicine, Keio University) licensed under CC Attribution-Share Alike 4.0 International".
The summary of the Creative Commons Attribution-Share Alike 4.0 International is found here.
With regard to this database, you are licensed to:
- freely access part or whole of this database, and acquire data;
- freely redistribute part or whole of the data from this database; and
- freely create and distribute database and other adapted materials based on part or whole of the data from this database,
under the license, as long as you comply with the following conditions:
- You must attribute this database in the manner specified by the author or licensor when distributing part or whole of this database or any adapted material.
- You must distribute any adapted material based on part or whole of the data from this database under CC Attribution-Share Alike 4.0 (or later), or CC Attribution-Share Alike Compatible License (the list is here).
- You need to contact the Licensor shown below to request a license for use of this database or any part thereof not licensed under the license.
4. Update History
| Date | Update contents |
|---|---|
| 2017/03/13 | SKIP Stemcell Database English archive site is opened. |
| 2013/03/29 | SKIP Stemcell Database (https://www.skip.med.keio.ac.jp/SKIPSearch/top?lang=en) is opened. |