The database of motifs found in plant cis-acting regulatory DNA elements based on previously published reports on vascular plants.
Data name | README |
Description of data contents | HTML file to describe "PLACE" data. |
File | README_e.html(English) |
Data name | Main |
Description of data contents | Nucleotide sequence information. For each "Main" entry, there may be one or more "Reference" entries available. |
File | place_main.zip (48.9 KB) |
Data item | Description |
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Identifier | Identifier |
Accession number | Accession number |
Date (operation) author | Date (operation) author |
Description | Description (regulation, gene, transacting factor, etc.) |
Keywords | Keywords |
Species | Species |
Sequence | Sequence of the cis-acting regulatory DNA element.
For the cis-acting elements the following symbols were used as codes representing A, G, C or T. B: C, G or T (Mar. 31, 1997) |
Data name | Reference |
Description of data contents | Literature information. For each "Main" entry, there may be one or more "Reference" entries available. |
File | place_reference.zip (52.5 KB) |
Data item | Description |
---|---|
Identifier | Identifier |
Authors | Authors |
Title | Title |
Literature data | Literature data |
Criteria | Criteria (DNase I footprinting study / Chemical modifications / Gel retardation assay / homology / other) |
PubMed | PubMed ID |
GenBank | DDBJ/EMBL/GenBank accession number |
Data name | Raw Data (ASCII format) |
Description of data contents | The document in EMBL-like format that contains brief descriptions of individual cis-elements. |
File | place.seq.zip (110 KB) |
Data item | Description |
---|---|
ID | Identifier |
AC | Accession number |
DT | Date (operation) author |
DE | Description (regulation, gene, transacting factor, etc.) |
KW | Keywords |
OS | Species |
RA | Authors |
RT | Title |
RL | Literature data |
RC | Criteria (DNase I footprinting study / Chemical modifications / Gel retardation assay / homology / other) |
RD | External Database (MEDLINE number or DDBJ/EMBL/GenBank accession number) |
SQ | Sequence of the cis-acting regulatory DNA element.
For the cis-acting elements the following symbols were used as codes representing A, G, C or T. B: C, G or T (Mar. 31, 1997) |
XX | Data item delimiter |
Data name | Raw Data (Signal scan format) |
Description of data contents | The document in Signal scan format that contains brief descriptions of individual cis-elements. |
File | place.dat.zip (7.4 KB) |
Data item | Description |
---|---|
Old data ID | Identifier in old data (r01.1 or earlier : Identifier, r02.0 or later : "unknown") |
ID | Identifier (r01.1 or earlier : Name, r02.0 or later : Identifier) |
Sequence | Sequence of the cis-acting regulatory DNA element.
For the cis-acting elements the following symbols were used as codes representing A, G, C or T. B: C, G or T (Mar. 31, 1997) |
Sequence length | Sequence length |
Accession number | Accession number |
Data name | Raw Data (FASTA format) |
Description of data contents | The document in FASTA format that contains brief descriptions of individual cis-elements. |
File | place.fasta.zip (36.3 KB) |
For the cis-acting elements the following symbols were used as codes representing A, G, C or T. B: C, G or T (Mar. 31, 1997) |
You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.
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If you use data from this database, please be sure attribute this database as follows: "PLACE © National Institute of Agrobiological Sciences licensed under CC Attribution-Share Alike 2.1 Japan".
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2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
National Institute of Agrobiological Sciences
E-mail: bi[at]ml[dot]affrc[dot]go[dot]jp
Date | Update contents |
---|---|
2016/08/22 | The contact address is changed. |
2014/10/20 | The URLs of the database maintenance site and the portal site are changed. |
2014/07/17 | PLACE English archive site is opened. |
1997/03/31 | PLACE (http://www.dna.affrc.go.jp/htdocs/PLACE/) is opened. |
2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
National Institute of Agrobiological Sciences
E-mail: bi[at]ml[dot]affrc[dot]go[dot]jp