KOME

2014/10/22

Web Site: http://cdna01.dna.affrc.go.jp/cDNA/
HTTPS Site: https://dbarchive.biosciencedbc.jp/data/kome/

The database of rice full-length cDNA clones that were sequenced in the rice full-length cDNA project.

README Content

Database Component
Data Description
License
Update History
Literature
Contact address

1. Database Component

README
Main
Basical information
Mapping data
Mapping data detail
Mapping Pseudomolecule data
Mapping Pseudomolecule data detail
GenBank blastn search result
GenBank blastx search result
Genome annotations
Product annotations
Japonica genome blast search result
Indica genome blast search result
RMOS blastn result
Tos17 link result
PLACE search result
ORF information
Arabidopsis CDS blastp result
PIR search result
SwissProt search result
UniProt search blastx result
InterPro search result
Blocks search result
GO classification GenBank
GO classification InterPro
GO classification Arabidopsis
Memsat search result
pSort search result
RPD link result
Nucleotide Sequence
Trimming information
Amino Acid Sequence
OPS index
All 3' EST
All 5' EST

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2. Data Description

2.1 README

Data name	README
Description of data contents	HTML file to describe "KOME" data.
File	README_e.html(English)

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2.2 Main

Data name	Main
Description of data contents	List of datasets
File	kome_main.zip (1.3 KB)

Data items are the following:

Data item	Description
Category	Category of the dataset
Title	Title of the dataset
Description	Description of the dataset
Sequence data file	Name of the fasta file
Data file (CSV)	Name of the CSV file
Data file (TogoDB)	Name of the dataset on Simple search website (TogoDB)

2.3 Basical information

Data name	Basical information
Description of data contents	Basic Information about full-length cDNA clones
File	kome_basical_information.zip (607 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	DDBJ accession number of the full-length cDNA clone. All the clones in the database were registered in DDBJ.
CLONE_ID	ID number assigned to each full-length cDNA clone
BELONG	Initial of the research institute where the clone was sequenced. (R: RIKEN, F: FAIS)
CLONE_NAME	Name of the full-length cDNA clone
CLUSTER_ID	Cluster ID of the full-length cDNA clone.Cluster IDs were numbered serially.
LENGTH	Length of the full-length cDNA sequence
POLYA_CUT_LENGTH	Length of the full-length cDNA sequence excluding the poly(A) region
SEQ_QUALITY	Ratio of non-N residues contained in the full-length cDNA sequence
POLYA_CUT_SEQ_QUALITY	Ratio of non-N residues contained in the full-length cDNA sequence excluding the poly(A) region
SEQ_ACCURACY	Sequence accuracy calculated as the average of accuracies of individual bases after a sequencing run.
LIBRARY	Information about the full-length cDNA library, such as tissues which the library derived from and their treatment conditions.

2.4 Mapping data

Data name	Mapping data
Description of data contents	Mapping information with the japonica rice genome sequences obtained from the International Rice Genome Sequencing Project (IRGSP)
File	kome_mapping_data.zip (723 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
BAC_ACCESSION_NO	Accession number of the mapped BAC contigs
CHROMOSOME	Chromosome number of the mapped BAC contigs
BAC_START_POS	Alignment start position on the mapped BAC contigs
BAC_END_POS	Alignment end position on the mapped BAC contigs
CDNA_START_POS	Alignment start position on the mapped cDNA clone
CDNA_END_POS	Alignment end position on the mapped cDNA clone
STRAND	Strand direction of the mapped cDNA clone
TU_ID	ID of the mapped TU (Transcriptional Unit)

2.5 Mapping data detail

Data name	Mapping data detail
Description of data contents	Detailed mapping information with the japonica rice genome sequences from the International Rice Genome Sequencing Project (IRGSP)
File	kome_mapping_data_detail.zip (2.3 MB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
BAC_ACCESSION_NO	Accession number of the mapped BAC contigs
CHROMOSOME	Chromosome number of the mapped BAC contigs
BAC_START_POS	Exon start position on the mapped BAC contigs
BAC_END_POS	Exon end position on the mapped BAC contigs
CDNA_START_POS	Exon start position on the mapped cDNA clone
CDNA_END_POS	Exon end position on the mapped cDNA clone
STRAND	Strand direction of the mapped cDNA clone
TU_ID	ID of the mapped TU (Transcriptional Unit)

2.6 Mapping Pseudomolecule data

Data name	Mapping Pseudomolecule data
Description of data contents	Mapping information with the TIGR japonica Pseudomolecules
File	kome_mapping_pseudomolecule_data.zip (719 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
HIT_NUMBER	Number of the sites where the cDNA clones were mapped
PSEUDOMOLECULE	Name of the mapped pseudomolecule
CHROMOSOME	Chromosome number of the mapped pseudomolecule
CHR_START_POS	Alignment start position on the mapped pseudomolecule
CHR_END_POS	Alignment end position on the mapped pseudomolecule
CDNA_START_POS	Alignment start position on the mapped cDNA clone
CDNA_END_POS	Alignment end position on the mapped cDNA clone
STRAND	Strand direction of the mapped cDNA clone
TU_ID	ID of the mapped TU (Transcriptional Unit)

2.7 Mapping Pseudomolecule data detail

Data name	Mapping Pseudomolecule data detail
Description of data contents	Detailed mapping information with the TIGR japonica Pseudomolecules
File	kome_mapping_pseudomolecule_data_detail.zip (2.5 MB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
HIT_NUMBER	Number of the sites where the cDNA clones were mapped
PSEUDOMOLECULE	Accession number of the mapped pseudomolecule
CHROMOSOME	Chromosome number of the mapped pseudomolecule
CHR_START_POS	Exon start position on the mapped pseudomolecule
CHR_END_POS	Exon end position on the mapped pseudomolecule
CDNA_START_POS	Exon start position on the mapped cDNA clone
CDNA_END_POS	Exon end position on the mapped cDNA clone
STRAND	Strand direction of the mapped cDNA clone
TU_ID	ID of the mapped TU (Transcriptional Unit)

2.8 GenBank blastn search result

Data name	GenBank blastn search result
Description of data contents	Results of blastn searches against GenBank nucleotide sequences
File	kome_genbank_blastn_search_result.zip (24 MB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
RANK	Ranking in the blast search result
ACCESSION	Accession number of the GenBank entry
DEFINITION	Definition of the GenBank clone
DIVISION	GenBank division
SCORE	Score in the blastn search result
EXPECT	Expect value in the blastn search result
IDENTITIES	Identities in the blastn search result
STRAND1_1	Strand direction of the subject sequence
STRAND1_2	Strand direction of the query sequence

2.9 GenBank blastx search result

Data name	GenBank blastx search result
Description of data contents	Results of blastx searches against GenBank amino acid sequences
File	kome_genbank_blastx_search_result.zip (34 MB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
RANK	Ranking in the blastx search result
ACCESSION	Accession number of the GenBank entry
DEFINITION	Definition of the GenBank clone
DIVISION	GenBank division
SCORE	Score in the blastx search result
EXPECT	Expect value in the blastx search result
IDENTITIES	Identities in the blastx search result
FRAME	Reading frame of the full-length cDNA clone

2.10 Genome annotations

Data name	Genome annotations
Description of data contents	Extracted the hits related to rice genomes from GenBank blastn/blastx results.
File	kome_genome_annotation.zip (514 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
BLAST_TYPE	Type of BLAST program (blastn or blastx)
HIT_ACCESION	Accession number of the GenBank entry
DIVISION	GenBank division
DEFINITION	Definition of the GenBank clone
RANK	Ranking in the blast search result
SCORE	Score in the blast search result
EXPECT	Expect value in the blast search result

2.11 Product annotations

Data name	Product annotations
Description of data contents	Extracted the hits related to protein gene products or protein functions from GenBank blastn/blastx results.
File	kome_product_annotation.zip (815 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
BLAST_TYPE	Type of BLAST program (blastn or blastx)
HIT_ACCESION	Accession number of the GenBank entry
DIVISION	GenBank division
DEFINITION	Definition of the GenBank clone
RANK	Ranking in the blast search result
SCORE	Score in the blast search result
EXPECT	Expect value in the blast search result

2.12 Japonica genome blast search result

Data name	Japonica genome blast search result
Description of data contents	Results of blastn searches against japonica genome sequences
File	kome_japonica_genome_blast_search_result.zip (802 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
BAC_ACCESSION_NO	Accession number of the GenBank entry
DEFINITION	Definition in the GenBank entry
EXPECT	Expect value in the blastn search result
SCORE	Score in the blastn search result

2.13 Indica genome blast search result

Data name	Indica genome blast search result
Description of data contents	Results of blastn searches against indica genome sequences (top hits only)
File	kome_indica_genome_blast_search_result.zip (338 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
INDICA_ACCESSION	Accession number of the GenBank entry
DEFINITION	Definition in the GenBank entry
EXPECT	Expect value in the blastn search result
SCORE	Score in the blastn search result
STRAND	Strand direction of the cDNA clone

2.14 RMOS blastn result

Data name	RMOS blastn result
Description of data contents	Results of blastn searches against the Rice EST Microarray (G-Array)
File	kome_rmos_blastn_result.zip (74 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
ARRAY_ELEMENT	Element number of the G-Array probe
PROBE_ACCESSION	Accession number of the G-Array probe
PROBE_CLONE_NAME	Clone name of the G-Array probe
EXPECT	Expect value in the blastn search result
SCORE	Score in the blastn search result

2.15 Tos17 link result

Data name	Tos17 link result
Description of data contents	Relation with Tos17 mutant clones
File	kome_tos17_link_result.zip (49 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
FULL_CLONE_NAME	Name of the full-length cDNA clone
TOS_NAME	Name of the Tos17 clone
BAC_ACCESSION_NO	Accession number of the mapped BAC clone
TOS_INSERT_POSITION	Insert position of the Tos17 clone on the BAC contigs
cDNA_START_POSITION	Mapping start position of the cDNA clone on the BAC contigs
cDNA_END_POSITION	Mapping end position of the cDNA clone on the BAC contigs

2.16 PLACE search result

Data name	PLACE search result
Description of data contents	Results of signal search against PLACE. PLACE: cis-acting regulatory DNA elements Database
File	kome_place_search_result.zip (43 MB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
HIT_NO	Ranking in the sigscan search result
SIGNAL_NAME	Name of the signal element
SIGNAL_TYPE	Signal type
LOCATION	Signal position
STRAND	Strand direction of the query cDNA sequence
SIGNAL_SEQ	Signal sequence
SIGNAL_ID	Signal element ID in PLACE

2.17 ORF information

Data name	ORF information
Description of data contents	Information about the longest ORFs
File	kome_orf_infomation.zip (526 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
FRAME_NO	Frame number
START_POSITION	Start position of the longest ORF
STOP_POSITION	End position of the longest ORF
LENGTH	Length of the longest ORF
OCCUPATION	Ratio of the ORF length to the cDNA sequence length

2.18 Arabidopsis CDS blastp result

Data name	Arabidopsis CDS blastp result
Description of data contents	Results of blastp searches against Arabidopsis thaliana CDSs
File	kome_arabidopsis_cds_blastp_result.zip (3.6 MB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
MIPS_CODE	MIPS code in the Arabidopsis thaliana database
DEFINITION	Definition of CDS in the Arabidopsis thaliana database
EXPECT	Expect value in the blastp search result
SCORE	Score in the blastp search result

2.19 PIR search result

Data name	PIR search result
Description of data contents	Results of blastx searches against the PIR protein database
File	kome_pir_search_result.zip (29 MB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
RANK	Ranking in the blastx search result
PIR_ACCESSION	Accession number in the PIR protein database
DEFINITION	Definition of the protein in the PIR protein database
EXPECT	Expect value in the blastx search result
SCORE	Score in the blastx search result

2.20 SwissProt search result

Data name	SwissProt search result
Description of data contents	Results of blastx searches against the Swiss-Prot database
File	kome_swissprot_search_result.zip (30 MB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
RANK	Ranking in the blastx search result
DEFINITION	Definition of the protein in the Swiss-Prot database
ENTRY_NAME	Name of the protein in the Swiss-Prot database
EXPECT	Expect value in the blastx search result
SCORE	Score in the blastx search result

2.21 UniProt search blastx result

Data name	UniProt search blastx result
Description of data contents	Results of blastx searches against the UniProt database
File	kome_uniprot_search_blastx_result.zip (1.4 MB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
RANK	Ranking in the blastx search result
UNIPROT ID	UniProt ID
DEFINITION	Definition of the protein in the UniProt database
EXPECT	Expect value in the blastx search result
SCORE	Score in the blastx search result

2.22 InterPro search result

Data name	InterPro search result
Description of data contents	Results of motif searches against the InterPro database
File	kome_interpro_search_result.zip (2.1 MB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
INTERPRO_ID	ID of the motif in the InterPro database
INTERPRO_NAME	Name of the motif in the InterPro database
METHOD	Motif search program
ACCESSION_ID	Accession number of the motif
SHORT_NAME	Short name of the motif
LOCATION	Location of the motif
EXPECT	Expect value in the search result

2.23 Blocks search result

Data name	Blocks search result
Description of data contents	Results of motif searches against the Blocks Database
File	kome_blocks_search_result.zip (60 MB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
RANK	Ranking in the search result
ACCESSION	Accession number of the motif in the Blocks Database
DESCRIPTION	Description of the motif in the Blocks Database
STRENGTH	Strength in the BLIMPS result
SCORE	Score in the BLIMPS result
RF	Reading frame (Always 0 since the sequence is in amino acids)
POSITION	Position of the motif
MOTIF_SEQ	Amino acid sequence of the motif
MOTIF_LENGTH	Length of the amino acid sequence of the motif

2.24 GO classification GenBank

Data name	GO classification GenBank
Description of data contents	Results of GO (Gene Ontology) term classifications done based on GenBank homology searches
File	kome_go_classification_genbank.zip (4.9 MB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
GO_ACCESSION	Accession number of the GO term

2.25 GO classification InterPro

Data name	GO classification InterPro
Description of data contents	Results of GO (Gene Ontology) term classifications done based on InterPro motif searches
File	kome_go_classification_interpro.zip (645 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
GO_ACCESSION	Accession number of the GO term

2.26 GO classification Arabidopsis

Data name	GO classification Arabidopsis
Description of data contents	Results of GO (Gene Ontology) term classifications done based on homology searches against predicted CDSs of Arabidopsis thaliana
File	kome_go_classification_arabidopsis.zip (418 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
GO_ACCESSION	Accession number of the GO term

2.27 Memsat search result

Data name	Memsat search result
Description of data contents	Results of transmembrane region predictions
File	kome_memsat_search_result.zip (209 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
COUNT	Number of transmembrane regions
WAY	Direction of 5' end

2.28 pSort search result

Data name	pSort search result
Description of data contents	Results of protein subcellular localization predictions
File	kome_psort_search_result.zip (823 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
RANK	Ranking in the PSORT prediction result
TARGET	Target organelle of the predicted signal sequence
CERTAINTY	Certainty in the PSORT prediction result
SCORE	Score in the WoLF PSORT prediction result

2.29 RPD link result

Data name	RPD link result
Description of data contents	Results of homology searches against the Rice Proteome Database
File	kome_rpd_link_result.zip (14 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
RPD_ID	ID of the protein in the Rice Proteome Database that is homologous to the clone
SCORE	Score in the blastn search result
COVERAGE	Query coverage between the protein in the Rice Proteome Database and the clone

2.30 Nucleotide Sequence

Data name	Nucleotide Sequence
Description of data contents	Nucleotide sequences of the full-length cDNA clones (trimmed sequences)
File	CSV: kome_ine_full_sequence_db.zip (19 MB) FASTA: kome_ine_full_sequence_db.fasta.zip (21 MB)

Data items are the following:

Data item	Description
ACCESSION	Accession number of the full-length cDNA clone
CLONE_ID	ID of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
CLUSTER_ID	Cluster ID
BELONG	Initial of the research institute where the clone was sequenced. (R: RIKEN, F: FAIS)
SEQUENCE	Nucleotide sequence

2.31 Trimming information

Data name	Trimming information
Description of data contents	Nucleotide sequences that the regions predicted to be poly(A) sites and vector-derived sites were trimmed. 161 out of 32,127 sequences were trimmed as above.
File	kome_trimming_information.zip (63 KB)

Data items are the following:

Data item	Description
ACCESSION_NO	Accession number of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
BELONG	Initial of the research institute where the clone was sequenced. (R: RIKEN, F: FAIS)
SEQ_DATA	Sequence after trimming
TRIM_TOP	Length of the sequence trimmed from 5' end
TRIM_END	Length of the sequence trimmed from 3' end
TRIM_LENGTH	Length of the sequence after trimming

2.32 Amino Acid Sequence

Data name	Amino Acid Sequence
Description of data contents	Amino acid sequences of the full-length cDNA clones deduced from the longest ORFs.
File	CSV: kome_ine_full_sequence_amino_db.zip (7.4 MB) FASTA: kome_ine_full_sequence_amino_db.fasta.zip (7.7 MB)

Data items are the following:

Data item	Description
ACCESSION	Accession number of the full-length cDNA clone
CLONE_ID	ID of the full-length cDNA clone
CLONE_NAME	Name of the full-length cDNA clone
CLUSTER_ID	Cluster ID
BELONG	Initial of the research institute where the clone was sequenced. (R: RIKEN, F: FAIS)
SEQUENCE	Amino acid sequence

2.33 OPS index

Data name	OPS index
Description of data contents	Index of OPS (Oryza Partial Sequence). Relationships between clone names and EST names are listed.
File	kome_ops_index.zip (2.6 MB)

Data items are the following:

Data item	Description
CLONE_NAME	Name of the full-length cDNA clone
3'EST_NAME	3' EST name
5'EST_NAME	5' EST name

2.34 All 3' EST

Data name	All 3' EST
Description of data contents	3' EST sequences
File	CSV: kome_est_3end_all.zip (70 MB) FASTA: kome_est_3end_all.fasta.zip (76 MB)

Data items are the following:

Data item	Description
3'EST_NAME	3' EST name
SEQUENCE	3' EST sequence

2.35 All 5' EST

Data name	All 5' EST
Description of data contents	5' EST sequences
File	CSV: kome_est_5end_all.zip (26 MB) FASTA: kome_est_5end_all.fasta.zip (27 MB)

Data items are the following:

Data item	Description
5'EST_NAME	5' EST name
SEQUENCE	5' EST sequence

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3. License

Last updated : 2013/07/30

You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.

The license for this database is specified in the Creative Commons Attribution-Share Alike 2.1 Japan.
If you use data from this database, please be sure attribute this database as follows: "KOME © Shoshi Kikuchi (National Institute of Agrobiological Sciences) licensed under CC Attribution-Share Alike 2.1 Japan".

The summary of the Creative Commons Attribution-Share Alike 2.1 Japan is found here.

With regard to this database, you are licensed to:

freely access part or whole of this database, and acquire data;
freely redistribute part or whole of the data from this database; and
freely create and distribute database and other derivative works based on part or whole of the data from this database,

under the license, as long as you comply with the following conditions:

You must attribute this database in the manner specified by the author or licensor when distributing part or whole of this database or any derivative work.
You must distribute any derivative work based on part or whole of the data from this database under the license.
You need to contact the Licensor shown below to request a license for use of this database or any part thereof not licensed under the license.

2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
National Institute of Agrobiological Sciences
Plant Genome Research Unit
Shoshi Kikuchi
E-mail: skikuchi[at]nias[dot]affrc[dot]go[dot]jp

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4. Update History

Date	Update contents
2014/10/22	The URL of the whole data download site is deleted due to its closure.
2014/10/20	The URLs of the database maintenance site and the portal site are changed.
2013/12/17	The URL of the portal site is changed.
2013/07/30	KOME english archive site is opened.
2003/07/18	KOME (http://cdna01.dna.affrc.go.jp/cDNA/) is opened.

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5. Literature

Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team, Kikuchi S*, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T;
Foundation of Advancement of International Science Genome Sequencing & Analysis Group, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K;
RIKEN, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y, Yasunishi A.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice
Science 2003 July 18; Vol.301 no.5631: pp.376-379
PMID: 12869764

Satoh K, Doi K, Nagata T, Kishimoto N, Suzuki K, Otomo Y, Kawai J, Nakamura M, Hirozane-Kishikawa T, Kanagawa S, Arakawa T, Takahashi-Iida J, Murata M, Ninomiya N, Sasaki D, Fukuda S, Tagami M, Yamagata H, Kurita K, Kamiya K, Yamamoto M, Kikuta A, Bito T, Fujitsuka N, Ito K, Kanamori H, Choi IR, Nagamura Y, Matsumoto T, Murakami K, Matsubara K, Carninci P, Hayashizaki Y, Kikuchi S.
Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray
PLoS One. 2007 Nov 28; 2(11):e1235.
PMID: 18043742

6. Contact address

When you have any question about "KOME", contact the following:

2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
National Institute of Agrobiological Sciences
Plant Genome Research Unit
Shoshi Kikuchi
E-mail: skikuchi[at]nias[dot]affrc[dot]go[dot]jp

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