GGGenome dataset

2019/10/17

Web Site: https://GGGenome.dbcls.jp/
HTTPS Site: https://dbarchive.biosciencedbc.jp/data/gggenome/

It is the dataset for search in GGGenome, a tool for fast and sensitive search for genomic and transcript sequence.

README Content

  1. Database Component
  2. Data Description
  3. License
  4. Update History
  5. Literature
  6. Contact address

1. Database Component

  1. README
  2. GGGenome dataset
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2. Data Description

2.1 README

Data name README
Description of data contents HTML file to describe "GGGenome dataset" data.
File README_e.html (English)
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2.2 GGGenome dataset

Data name GGGenome dataset
Description of data contents

It is data for GGGenome. Each data is compressed in sub directory. It consists of reference sequence file (fasta format) and index files for GGGenome.

Reference sequence file:
・*.fa

Index files for GGGenome:
・*.dna4
・*.doc
・*.fmidx
・*.sa

File data (57 GB)
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3. License

Last updated : 2019/10/17

You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.

Creative Commons License

The license for this database is specified in the Creative Commons Attribution 4.0 International.
If you use data from this database, please be sure attribute this database as follows: "GGGenome dataset © DBCLS licensed under CC Attribution 4.0 International".

The summary of the Creative Commons Attribution 4.0 International is found here.

With regard to this database, you are licensed to:

  1. freely access part or whole of this database, and acquire data;
  2. freely redistribute part or whole of the data from this database; and
  3. freely create and distribute database and other adapted materials based on part or whole of the data from this database,

under the license, as long as you comply with the following conditions:

  1. You must attribute this database in the manner specified by the author or licensor when distributing part or whole of this database or any adapted material.
  2. You need to contact the Licensor shown below to request a license for use of this database or any part thereof not licensed under the license.

https://dbcls.rois.ac.jp/contact.html

About Providing Links to This Database

You can freely provide links to all contents in this database. But, contents might be changed without notice.

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4. Update History

DateUpdate contents
2019/10/17 GGGenome dataset English archive site is opened.
2012/07/04 GGGenome dataset (https://gggenome.dbcls.jp/) is opened.
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5. Literature

-
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6. Contact address

When you have any question about "GGGenome dataset", contact the following:

https://dbcls.rois.ac.jp/contact-en.html

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