About 4,600 insertion lines of enhancer trap lines based on the Gal4-UAS method were generated in Drosophila, and all of these insertion lines were tested for enhancer activity in embryo and larva by NP consortium. Moreover, the insertion position was mapped in the genome sequence form, and the correspondence relationship with gene was identified for 2,157 independent sites. This database is available to the public as the database that has compiled the insertion position and enhancer activity of Gal4 enhancer trap lines.
| Data name | README |
| Description of data contents | HTML file to describe "GETDB" data. |
| File | README_e.html(English) |
| Data name | Expression information data table (Strain List) of Drosophila GAL4 enhancer trap lines |
| Description of data contents |
Line-related information on Drosophila GAL4 enhancer trap lines, and the text information and expression image data concerning expression of enhancer activity 4,250 lines. |
| File | getdb.zip (331KB) |
| Data item | Primary key | Foreign key | Description |
|---|---|---|---|
| Line information | |||
| DGRC Number | * | Line number of DGRC (Drosophila Genetic Resource Center) (Link to DGRC in TogoDB) | |
| Genotype | Genotype | ||
| Insertion Site | Insert site(s) on the physical map. For two or more insert sites, use semicolon to delimit each site (see http://www.dgrc.kit.jp/~jdd/chromosome/index.html). (Link to the DGRC genome viewer is created, and the download file has link tag.) | ||
| Map Viewer | DGRC Number (TogoDB has link to the DGRC genome viewer.) | ||
| Related Genes | Name of related gene | ||
| Original Number | Line number in GETDB | ||
| Chr. | Chromosome number | ||
| Comments | Comment | ||
| Balancer | Name of balancer chromosome | ||
| Link to Clone Table | Link to clone list (Empty column in downloaded file) | ||
| Num of clones | Number of clones | ||
| Cluster id | Cluster ID (two or more) | ||
| Link to Cluster Table | Cluster ID. Two or more IDs will be delimited by %7C ("|" decoded by UTF8). (Link to cluster table is available in TogoDB.) | ||
| Num of clusters | Number of clusters | ||
| Stock Request | Link to placing an order for the stock (Empty column in the downloaded file.) | ||
| Expression information | |||
| Embryonic Expression | Information on expression in embryo | ||
| Larval GFP | Information on expression of GFP in larva | ||
| Larval X-gal | Information on expression of X-gal in larva | ||
| Adult GFP | Information on expression of GFP in adult | ||
| Lethality | Lethality | ||
| Also known as | Genotype alias | ||
| Original Comments | Original Comment (Comment by GETDB) | ||
| Fluorescence expression image | |||
| Disc(Image) | Expression image in imaginal disc | ||
| Disc (Number) | Number of expression images in imaginal disc | ||
| Embryo(Image) | Expression image in embryo | ||
| Embryo (Number) | Number of expression images in embryo | ||
| Larval GFP(Image) | Fluorescence expression image in GFP-dyed larva | ||
| Larval GFP (Number) | Number of fluorescence expression images in GFP-dyed larva | ||
| Adult(Image) | Expression image in adult | ||
| Adult (Number) | Number of expression images in adult | ||
| Data name | Genome mapping data table of Drosophila GAL4 enhancer trap lines (Clone List) |
| Description of data contents |
A table showing the insert position of the Drosophila GAL4 enhancer trap element and the data on the adjacent downstream sequence for each clone. 5,555 clones. |
| File | getdb_clone.zip (1.4MB) |
| Data item | Primary key | Foreign key | Description |
|---|---|---|---|
| Clone Name | * | Name of the clone of the genome sequence adjacent to the 5'-end of the Drosophila GAL4 enhancer trap element | |
| DGRC Number | * | Line number (Link to Strain Table in TogoDB) | |
| Cluster Id | * | Cluster ID of genome insert coordinate (Link to Cluster Table in TogoDB) | |
| Strand | Insert direction to genome sequence (*) | ||
| Insertion Point | Insert position on genome sequence (*) | ||
| Chr. Band | Chromosome band | ||
| Flanking Sequence | Adjacent sequence downstream of the insert point. |
*1: Obtained by the BLAST search of the sequence identified by the Berkeley Drosophila Genome Project (BDGP)/Celera (Release 3.1) and Flanking Sequence.
| Data name | Clustering Table of the genome insert site of Drosophila GAL4 enhancer trap lines (Cluster List) |
| Description of data contents |
Cluster data in which the insert positions of the Drosophila GAL4 enhancer trap element are clustered by the closeness of their positions from each other. 2,099 clusters. |
| File | getdb_cluster.zip (56KB) |
| Data item | Primary key | Foreign key | Description |
|---|---|---|---|
| ClusterId | * | Cluster ID of genome insert coordinate | |
| Cluster Member(Clone Name : Cluster Id) | Clone name corresponding to each of the insert point sequences belonging to the cluster | ||
| Cluster Size | Number of insert coordinates belonging to the cluster. | ||
| Link to Clone Table | Cluster ID. (Link to CloneTable in TogoDB.) | ||
| Link to Strain Table | Cluster ID. (Link to Strain Table in TogoDB) | ||
| Chr. Band | Chromosome band | ||
| Insertion Point (Min) | Minimum value in the cluster of insert positions on genome sequence | ||
| Insertion Point (Max) | Maximum value in the cluster of insert positions on genome sequence | ||
| Max-Min | Maximum value minus minimum value of insert positions on genome sequence |
| Data name | Expression image data of Drosophila GAL4 enhancer trap lines |
| Description of data contents |
3,075 expression image data by developmental stages of Drosophila |
| File | getdb_images.zip (247MB) |
You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.
The license for this database is specified in the
Creative Commons Attribution-Share Alike 2.1 Japan.
If you use data from this database, please be sure attribute this database as follows:
"GETDB, Copyright© 2010 Shigeo Hayashi(RIKEN) licensed under CC Attribution-Share Alike 2.1 Japan".
The summary of the Creative Commons Attribution-Share Alike 2.1 Japan is found
here.
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Shigeo Hayashi
Laboratory for Morphogenetic Signaling, RIKEN Center for Developmental Biology
2-2-3 Minatojima-Minamimachi, Chuo-ku, Kobe
650-0047
Tel: +81-78-306-3185
FAX: +81-78-306-3183
E-mail: shayashi[at]cdb[dot]riken[dot]jp
| Date | Update contents |
| 2014/05/09 | "URL of the portal site" is changed. |
| 2010/03/29 | GETDB English archive site is opened. |
| 2003/8/1 | GETDB(http://kyotofly.kit.jp/stocks/GETDB/getdb.html) is released. |
Shigeo Hayashi
Laboratory for Morphogenetic Signaling, RIKEN Center for Developmental Biology
2-2-3 Minatojima-Minamimachi, Chuo-ku, Kobe
650-0047
Tel: +81-78-306-3185
FAX: +81-78-306-3183
E-mail: shayashi[at]cdb[dot]riken[dot]jp