Extract Name Comment [rna_tube] Comment [sample_name] Comment [organism] Protocol REF Parameter [rna_extraction] Extract Name Comment [rna_id] Comment [Material Type] Comment [comment_on_rna] Protocol REF Comment [lsid] Parameter [library_protocol] Library Name Comment [library_id] Protocol REF Parameter [sequence_protocol] Parameter [machine_name] Parameter [run_name] Parameter [flowcell.channel] File Name Comment [sequence_raw_file] Protocol REF Parameter [sex] File Name 14298-155B5 14298-155B5 acute myeloid leukemia (FAB M5) cell line:THP-1 (cytoplasmic fraction) Homo sapiens standard cytoplasmic standard cytoplasmic 14298-155B5.rna 14298-155B5.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"cytoplasmic RNA"; rna_sample_type:total RNA; extract_method:standard cytoplasmic; RIN:NULL; A260A280:2.08; A260A230:2.07 OP-HELISCOPE-CAGE-v4.0 1334 OP-HELISCOPE-CAGE-v4.0 CNhs14556 CNhs14556 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch05 /sequencedata/heliscope/srf/2012_3_16_GOS044 /sequencedata/heliscope/srf/2012_3_16_GOS044 delve_align male acute%20myeloid%20leukemia%20%28FAB%20M5%29%20cell%20line%3aTHP-1%20%28cytoplasmic%20fraction%29.CNhs14556.14298-155B5.hg38.nobarcode.bam 14301-155B8 14301-155B8 Fibroblast - skin, normal donor2 (cytoplasmic fraction) Homo sapiens standard cytoplasmic standard cytoplasmic 14301-155B8.rna 14301-155B8.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"cytoplasmic RNA"; rna_sample_type:total RNA; extract_method:standard cytoplasmic; RIN:NULL; A260A280:2.1; A260A230:2.01 OP-HELISCOPE-CAGE-v4.0 1334 OP-HELISCOPE-CAGE-v4.0 CNhs14561 CNhs14561 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch15 /sequencedata/heliscope/srf/2012_3_16_GOS044 /sequencedata/heliscope/srf/2012_3_16_GOS044 delve_align male Fibroblast%20-%20skin%2c%20normal%20donor2%20%28cytoplasmic%20fraction%29.CNhs14561.14301-155B8.hg38.nobarcode.bam 14302-155B9 14302-155B9 Fibroblast - skin normal, donor2 (nuclear fraction) Homo sapiens standard nuclear standard nuclear 14302-155B9.rna 14302-155B9.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"nuclear RNA"; rna_sample_type:total RNA; extract_method:standard nuclear; RIN:NULL; A260A280:2.04; A260A230:2.04 OP-HELISCOPE-CAGE-v3.12 912 OP-HELISCOPE-CAGE-v3.12 CNhs12582 CNhs12582 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc1.ch22 /sequencedata/heliscope/srf/2011_5_10_RikenRun18 /sequencedata/heliscope/srf/2011_5_10_RikenRun18 delve_align male Fibroblast%20-%20skin%20normal%2c%20donor2%20%28nuclear%20fraction%29.CNhs12582.14302-155B9.hg38.nobarcode.bam 14305-155C3 14305-155C3 Fibroblast - skin spinal muscular atrophy, donor3 (nuclear fraction) Homo sapiens standard nuclear standard nuclear 14305-155C3.rna 14305-155C3.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"nuclear RNA"; rna_sample_type:total RNA; extract_method:standard nuclear; RIN:NULL; A260A280:2.13; A260A230:1.95 OP-HELISCOPE-CAGE-v4.0 914 OP-HELISCOPE-CAGE-v4.0 CNhs12398 CNhs12398 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch24 /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV delve_align male Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor3%20%28nuclear%20fraction%29.CNhs12398.14305-155C3.hg38.nobarcode.bam 14308-155C6 14308-155C6 Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction) Homo sapiens standard nuclear standard nuclear 14308-155C6.rna 14308-155C6.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"nuclear RNA"; rna_sample_type:total RNA; extract_method:standard nuclear; RIN:NULL; A260A280:2.12; A260A230:2.15 OP-HELISCOPE-CAGE-v4.0 914 OP-HELISCOPE-CAGE-v4.0 CNhs12399 CNhs12399 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch21 /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV delve_align male Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor3%20%28nuclear%20fraction%29.CNhs12399.14308-155C6.hg38.nobarcode.bam 14310-155C8 14310-155C8 Fibroblast - Aortic Adventitial donor3 (cytoplasmic fraction) Homo sapiens standard cytoplasmic standard cytoplasmic 14310-155C8.rna 14310-155C8.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"cytoplasmic RNA"; rna_sample_type:total RNA; extract_method:standard cytoplasmic; RIN:NULL; A260A280:2.07; A260A230:2.07 OP-HELISCOPE-CAGE-v4.0 1334 OP-HELISCOPE-CAGE-v4.0 CNhs14559 CNhs14559 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch21 /sequencedata/heliscope/srf/2012_3_16_GOS044 /sequencedata/heliscope/srf/2012_3_16_GOS044 delve_align female Fibroblast%20-%20Aortic%20Adventitial%20donor3%20%28cytoplasmic%20fraction%29.CNhs14559.14310-155C8.hg38.nobarcode.bam 14311-155C9 14311-155C9 Fibroblast - Aortic Adventitial, donor3 (nuclear fraction) Homo sapiens standard nuclear standard nuclear 14311-155C9.rna 14311-155C9.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"nuclear RNA"; rna_sample_type:total RNA; extract_method:standard nuclear; RIN:NULL; A260A280:2.11; A260A230:2.15 OP-HELISCOPE-CAGE-v4.0 914 OP-HELISCOPE-CAGE-v4.0 CNhs12400 CNhs12400 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch18 /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV delve_align female Fibroblast%20-%20Aortic%20Adventitial%2c%20donor3%20%28nuclear%20fraction%29.CNhs12400.14311-155C9.hg38.nobarcode.bam 14313-155D2 14313-155D2 Smooth Muscle Cells - Aortic, donor0 (cytoplasmic fraction) Homo sapiens standard cytoplasmic standard cytoplasmic 14313-155D2.rna 14313-155D2.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"cytoplasmic RNA"; rna_sample_type:total RNA; extract_method:standard cytoplasmic; RIN:NULL; A260A280:2.06; A260A230:1.83 OP-HELISCOPE-CAGE-v4.0 914 OP-HELISCOPE-CAGE-v4.0 CNhs12401 CNhs12401 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch15 /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV delve_align male Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0%20%28cytoplasmic%20fraction%29.CNhs12401.14313-155D2.hg38.nobarcode.bam 14314-155D3 14314-155D3 Smooth Muscle Cells - Aortic, donor0 (nuclear fraction) Homo sapiens standard nuclear standard nuclear 14314-155D3.rna 14314-155D3.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"nuclear RNA"; rna_sample_type:total RNA; extract_method:standard nuclear; RIN:NULL; A260A280:2.09; A260A230:2.15 OP-HELISCOPE-CAGE-v4.0 914 OP-HELISCOPE-CAGE-v4.0 CNhs12402 CNhs12402 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch12 /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV delve_align male Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0%20%28nuclear%20fraction%29.CNhs12402.14314-155D3.hg38.nobarcode.bam 14316-155D5 14316-155D5 Small Airway Epithelial Cells donor3 (cytoplasmic fraction) Homo sapiens standard cytoplasmic standard cytoplasmic 14316-155D5.rna 14316-155D5.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"cytoplasmic RNA"; rna_sample_type:total RNA; extract_method:standard cytoplasmic; RIN:NULL; A260A280:2.08; A260A230:2.14 OP-HELISCOPE-CAGE-v4.0 1334 OP-HELISCOPE-CAGE-v4.0 CNhs14563 CNhs14563 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch09 /sequencedata/heliscope/srf/2012_3_16_GOS044 /sequencedata/heliscope/srf/2012_3_16_GOS044 delve_align male Small%20Airway%20Epithelial%20Cells%20donor3%20%28cytoplasmic%20fraction%29.CNhs14563.14316-155D5.hg38.nobarcode.bam 14317-155D6 14317-155D6 Small Airway Epithelial Cells, donor3 (nuclear fraction) Homo sapiens standard nuclear standard nuclear 14317-155D6.rna 14317-155D6.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"nuclear RNA"; rna_sample_type:total RNA; extract_method:standard nuclear; RIN:NULL; A260A280:2.04; A260A230:1.9 OP-HELISCOPE-CAGE-v3.12 912 OP-HELISCOPE-CAGE-v3.12 CNhs12583 CNhs12583 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc1.ch19 /sequencedata/heliscope/srf/2011_5_10_RikenRun18 /sequencedata/heliscope/srf/2011_5_10_RikenRun18 delve_align male Small%20Airway%20Epithelial%20Cells%2c%20donor3%20%28nuclear%20fraction%29.CNhs12583.14317-155D6.hg38.nobarcode.bam 14319-155D8 14319-155D8 Preadipocyte - breast donor2 (cytoplasmic fraction) Homo sapiens standard cytoplasmic standard cytoplasmic 14319-155D8.rna 14319-155D8.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"cytoplasmic RNA"; rna_sample_type:total RNA; extract_method:standard cytoplasmic; RIN:NULL; A260A280:2.04; A260A230:1.99 OP-HELISCOPE-CAGE-v4.0 1334 OP-HELISCOPE-CAGE-v4.0 CNhs14562 CNhs14562 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch12 /sequencedata/heliscope/srf/2012_3_16_GOS044 /sequencedata/heliscope/srf/2012_3_16_GOS044 delve_align female Preadipocyte%20-%20breast%20donor2%20%28cytoplasmic%20fraction%29.CNhs14562.14319-155D8.hg38.nobarcode.bam 14320-155D9 14320-155D9 Preadipocyte - breast, donor2 (nuclear fraction) Homo sapiens standard nuclear standard nuclear 14320-155D9.rna 14320-155D9.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"nuclear RNA"; rna_sample_type:total RNA; extract_method:standard nuclear; RIN:NULL; A260A280:2.08; A260A230:2.01 OP-HELISCOPE-CAGE-v3.12 912 OP-HELISCOPE-CAGE-v3.12 CNhs12584 CNhs12584 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc1.ch16 /sequencedata/heliscope/srf/2011_5_10_RikenRun18 /sequencedata/heliscope/srf/2011_5_10_RikenRun18 delve_align female Preadipocyte%20-%20breast%2c%20donor2%20%28nuclear%20fraction%29.CNhs12584.14320-155D9.hg38.nobarcode.bam 14322-155E2 14322-155E2 Fibroblast - skin, normal donor1 (cytoplasmic fraction) Homo sapiens standard cytoplasmic standard cytoplasmic 14322-155E2.rna 14322-155E2.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"cytoplasmic RNA"; rna_sample_type:total RNA; extract_method:standard cytoplasmic; RIN:NULL; A260A280:2.07; A260A230:2.12 OP-HELISCOPE-CAGE-v4.0 1334 OP-HELISCOPE-CAGE-v4.0 CNhs14560 CNhs14560 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch18 /sequencedata/heliscope/srf/2012_3_16_GOS044 /sequencedata/heliscope/srf/2012_3_16_GOS044 delve_align male Fibroblast%20-%20skin%2c%20normal%20donor1%20%28cytoplasmic%20fraction%29.CNhs14560.14322-155E2.hg38.nobarcode.bam 14323-155E3 14323-155E3 Fibroblast - skin normal, donor1 (nuclear fraction) Homo sapiens standard nuclear standard nuclear 14323-155E3.rna 14323-155E3.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"nuclear RNA"; rna_sample_type:total RNA; extract_method:standard nuclear; RIN:NULL; A260A280:2.09; A260A230:2.14 OP-HELISCOPE-CAGE-v4.0 914 OP-HELISCOPE-CAGE-v4.0 CNhs12403 CNhs12403 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch09 /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV delve_align male Fibroblast%20-%20skin%20normal%2c%20donor1%20%28nuclear%20fraction%29.CNhs12403.14323-155E3.hg38.nobarcode.bam 14326-155E6 14326-155E6 Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction) Homo sapiens standard nuclear standard nuclear 14326-155E6.rna 14326-155E6.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"nuclear RNA"; rna_sample_type:total RNA; extract_method:standard nuclear; RIN:NULL; A260A280:2.1; A260A230:2.06 OP-HELISCOPE-CAGE-v4.0 914 OP-HELISCOPE-CAGE-v4.0 CNhs12404 CNhs12404 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch06 /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV delve_align male Fibroblast%20-%20skin%20spinal%20muscular%20atrophy%2c%20donor1%20%28nuclear%20fraction%29.CNhs12404.14326-155E6.hg38.nobarcode.bam 14329-155E9 14329-155E9 Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction) Homo sapiens standard nuclear standard nuclear 14329-155E9.rna 14329-155E9.rna total RNA comment:Sample category:"FANTOM5 update January1"; extract type:"nuclear RNA"; rna_sample_type:total RNA; extract_method:standard nuclear; RIN:NULL; A260A280:2.1; A260A230:2.06 OP-HELISCOPE-CAGE-v4.0 914 OP-HELISCOPE-CAGE-v4.0 CNhs12405 CNhs12405 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch03 /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV /sequencedata/heliscope/srf/2011_2_25_RikenRun10_1100FOV delve_align female Fibroblast%20-%20skin%20dystrophia%20myotonica%2c%20donor1%20%28nuclear%20fraction%29.CNhs12405.14329-155E9.hg38.nobarcode.bam 14331-155F2 14331-155F2 Fibroblast - Aortic Adventitial donor2 (cytoplasmic fraction) Homo sapiens standard whole cell standard whole cell 14331-155F2.rna 14331-155F2.rna total RNA comment:Sample category:"FANTOM5 update January20"; company:"Lonza"; cell lot:"lot:0000099514";cell catalog:"7F3048";RNA Catalog number:"N/A";; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:NULL; A260A280:2.05; A260A230:2.04 OP-HELISCOPE-CAGE-v4.0 1334 OP-HELISCOPE-CAGE-v4.0 CNhs14558 CNhs14558 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch24 /sequencedata/heliscope/srf/2012_3_16_GOS044 /sequencedata/heliscope/srf/2012_3_16_GOS044 delve_align female Fibroblast%20-%20Aortic%20Adventitial%20donor2%20%28cytoplasmic%20fraction%29.CNhs14558.14331-155F2.hg38.nobarcode.bam 14332-155F3 14332-155F3 Fibroblast - Aortic Adventitial, donor2 (nuclear fraction) Homo sapiens standard whole cell standard whole cell 14332-155F3.rna 14332-155F3.rna total RNA comment:Sample category:"FANTOM5 update January20"; company:"Lonza"; cell lot:"lot:0000099514";cell catalog:"7F3048";RNA Catalog number:"N/A";; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:9.5; A260A280:2.06; A260A230:2.01 OP-HELISCOPE-CAGE-v3.12 917 OP-HELISCOPE-CAGE-v3.12 CNhs12581 CNhs12581 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch01 /sequencedata/heliscope/srf/2011_5_10_RikenRun18 /sequencedata/heliscope/srf/2011_5_10_RikenRun18 delve_align female Fibroblast%20-%20Aortic%20Adventitial%2c%20donor2%20%28nuclear%20fraction%29.CNhs12581.14332-155F3.hg38.nobarcode.bam 14334-155F5 14334-155F5 Small Airway Epithelial Cells donor2 (cytoplasmic fraction) Homo sapiens standard whole cell standard whole cell 14334-155F5.rna 14334-155F5.rna total RNA comment:Sample category:"FANTOM5 update April14"; company:"Lonza"; cell lot:"lot:5F0380J";cell catalog:"CC-2547";; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:NULL; A260A280:2.05; A260A230:2.14 OP-HELISCOPE-CAGE-v4.0 1334 OP-HELISCOPE-CAGE-v4.0 CNhs14564 CNhs14564 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch06 /sequencedata/heliscope/srf/2012_3_16_GOS044 /sequencedata/heliscope/srf/2012_3_16_GOS044 delve_align male Small%20Airway%20Epithelial%20Cells%20donor2%20%28cytoplasmic%20fraction%29.CNhs14564.14334-155F5.hg38.nobarcode.bam 14335-155F6 14335-155F6 Small Airway Epithelial Cells donor2 (nuclear fraction) Homo sapiens standard whole cell standard whole cell 14335-155F6.rna 14335-155F6.rna total RNA comment:Sample category:"FANTOM5 update April14"; company:"Lonza"; cell lot:"lot:5F0380J";cell catalog:"CC-2547";; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:NULL; A260A280:1.91; A260A230:1.36 OP-HELISCOPE-CAGE-v4.0 1334 OP-HELISCOPE-CAGE-v4.0 CNhs14565 CNhs14565 OP-HELISCOPE-sequencing-v1.0 OP-HELISCOPE-sequencing-v1.0 NA NA fc2.ch03 /sequencedata/heliscope/srf/2012_3_16_GOS044 /sequencedata/heliscope/srf/2012_3_16_GOS044 delve_align male Small%20Airway%20Epithelial%20Cells%20donor2%20%28nuclear%20fraction%29.CNhs14565.14335-155F6.hg38.nobarcode.bam