Source Name Comment [rna_tube] Comment [sample_name] Comment [organism] Comment [barcode] Protocol REF Parameter [rna_extraction] Extract Name Comment [rna_id] Comment [Material Type] Comment [comment_on_rna] Protocol REF Comment [lsid] Parameter [library_protocol] Library Name Comment [library_id] Protocol REF Parameter [sequence_protocol] Parameter [machine_name] Parameter [run_name] Parameter [flowcell.channel] File Name Comment [sequence_raw_file] Protocol REF Parameter [sex] File Name 11210-116A4 11210-116A4 Smooth Muscle Cells - Aortic, donor0 Homo sapiens GCTATA NA NA 11210-116A4.rna 11210-116A4.rna Total RNA Sample category:"FANTOM5 snapshot"; company:"Cell Applications"; RNA lot number:""; RNA Catalog number:"CA354-R10a" OP-SOLEXA-nanoCAGE-Direct-v1.4 841 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10018 NCig10018 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110415_HWUSI-EAS566_00034_FC64JBGAAXX/ /sequencedata/Solexa/110415_HWUSI-EAS566_00034_FC64JBGAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 male Smooth%20Muscle%20Cells%20-%20Aortic%2c%20donor0.NCig10018.11210-116A4.hg19.GCTATA.bam 12176-128I7 12176-128I7 Whole blood (ribopure), donor090325, donation1 Homo sapiens GCTATA NA NA 12176-128I7.rna 12176-128I7.rna Total RNA Sample category:"FANTOM5 snapshot"; company:"N/A"; cell lot:"N/A"; cell catalog:"N/A"; RNA lot number:"N/A"; RNA Catalog number:"N/A"; donor(cell lot):"ID090325-2" OP-SOLEXA-nanoCAGE-Direct-v1.4 841 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10019 NCig10019 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110415_HWUSI-EAS566_00034_FC64JBGAAXX/ /sequencedata/Solexa/110415_HWUSI-EAS566_00034_FC64JBGAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 male Whole%20blood%20%28ribopure%29%2c%20donor090325%2c%20donation1.NCig10019.12176-128I7.hg19.GCTATA.bam 11207-116A1 11207-116A1 Endothelial Cells - Aortic, donor0 Homo sapiens GCTATA standard whole cell standard whole cell 11207-116A1.rna 11207-116A1.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"Cell Applications"; RNA lot number:""; RNA Catalog number:"CA304-R10a"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:8.6; A260A280:2.18; A260A230:2.61 OP-SOLEXA-nanoCAGE-Direct-v1.4 863 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10038 NCig10038 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110428_HWUSI-EAS566_00036_FC64JBDAAXX/ /sequencedata/Solexa/110428_HWUSI-EAS566_00036_FC64JBDAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 male Endothelial%20Cells%20-%20Aortic%2c%20donor0.NCig10038.11207-116A1.hg19.GCTATA.bam 11222-116B7 11222-116B7 Fibroblast - Gingival, donor4 (GFH2) Homo sapiens GCTATA standard whole cell standard whole cell 11222-116B7.rna 11222-116B7.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"N/A"; RNA lot number:""; RNA Catalog number:"N/A"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:9.6; A260A280:2.04333; A260A230:1.98667 OP-SOLEXA-nanoCAGE-Direct-v1.4 863 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10039 NCig10039 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110428_HWUSI-EAS566_00036_FC64JBDAAXX/ /sequencedata/Solexa/110428_HWUSI-EAS566_00036_FC64JBDAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 male Fibroblast%20-%20Gingival%2c%20donor4%20%28GFH2%29.NCig10039.11222-116B7.hg19.GCTATA.bam 11224-116B9 11224-116B9 CD14+ Monocytes, donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11224-116B9.rna 11224-116B9.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"3HBiomedical"; RNA lot number:"Mon725"; RNA Catalog number:"3H100-30-10"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:7.5; A260A280:2.19; A260A230:2.49 OP-SOLEXA-nanoCAGE-Direct-v1.4 863 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10040 NCig10040 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110428_HWUSI-EAS566_00036_FC64JBDAAXX/ /sequencedata/Solexa/110428_HWUSI-EAS566_00036_FC64JBDAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 male CD14%2b%20Monocytes%2c%20donor1.NCig10040.11224-116B9.hg19.GCTATA.bam 11229-116C5 11229-116C5 CD14+ monocyte derived endothelial progenitor cells, donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11229-116C5.rna 11229-116C5.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"3HBiomedical"; RNA lot number:"EPC722"; RNA Catalog number:"3H100-81-10"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:7.7; A260A280:2.03; A260A230:2.25 OP-SOLEXA-nanoCAGE-Direct-v1.4 864 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10041 NCig10041 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 male CD14%2b%20monocyte%20derived%20endothelial%20progenitor%20cells%2c%20donor1.NCig10041.11229-116C5.hg19.GCTATA.bam 11245-116E3 11245-116E3 Fibroblast - Aortic Adventitial, donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11245-116E3.rna 11245-116E3.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"Lonza"; RNA lot number:""; RNA Catalog number:"N/A"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:9.7; A260A280:2.00333; A260A230:2.07 OP-SOLEXA-nanoCAGE-Direct-v1.4 864 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10042 NCig10042 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 female Fibroblast%20-%20Aortic%20Adventitial%2c%20donor1.NCig10042.11245-116E3.hg19.GCTATA.bam 11246-116E4 11246-116E4 Intestinal epithelial cells (polarized), donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11246-116E4.rna 11246-116E4.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"Cell systems"; RNA lot number:""; RNA Catalog number:"N/A"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:9.6; A260A280:2.06; A260A230:1.92 OP-SOLEXA-nanoCAGE-Direct-v1.4 864 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10043 NCig10043 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 unknown_sex_type Intestinal%20epithelial%20cells%20%28polarized%29%2c%20donor1.NCig10043.11246-116E4.hg19.GCTATA.bam 11247-116E5 11247-116E5 Mesothelial Cells, donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11247-116E5.rna 11247-116E5.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"Zenbio"; RNA lot number:""; RNA Catalog number:"N/A"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:9.7; A260A280:2.08; A260A230:0.44 OP-SOLEXA-nanoCAGE-Direct-v1.4 864 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10044 NCig10044 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 female Mesothelial%20Cells%2c%20donor1.NCig10044.11247-116E5.hg19.GCTATA.bam 11248-116E6 11248-116E6 Anulus Pulposus Cell, donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11248-116E6.rna 11248-116E6.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"Sciencell/3H"; RNA lot number:"lot:5026"; RNA Catalog number:"SC4815"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:9.9; A260A280:2.14; A260A230:2.42 OP-SOLEXA-nanoCAGE-Direct-v1.4 864 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10045 NCig10045 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 male Anulus%20Pulposus%20Cell%2c%20donor1.NCig10045.11248-116E6.hg19.GCTATA.bam 11249-116E7 11249-116E7 Pancreatic stromal cells, donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11249-116E7.rna 11249-116E7.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"Cell systems"; RNA lot number:""; RNA Catalog number:"N/A"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:9.8; A260A280:1.99; A260A230:1.52 OP-SOLEXA-nanoCAGE-Direct-v1.4 864 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10046 NCig10046 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 male Pancreatic%20stromal%20cells%2c%20donor1.NCig10046.11249-116E7.hg19.GCTATA.bam 11256-116F5 11256-116F5 Small Airway Epithelial Cells, donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11256-116F5.rna 11256-116F5.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"Lonza"; RNA lot number:""; RNA Catalog number:"N/A"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:10; A260A280:2.02667; A260A230:2.11 OP-SOLEXA-nanoCAGE-Direct-v1.4 864 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10047 NCig10047 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ /sequencedata/Solexa/110511_HWI-EAS746_00035_FC64GPUAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 female Small%20Airway%20Epithelial%20Cells%2c%20donor1.NCig10047.11256-116F5.hg19.GCTATA.bam 11273-116H4 11273-116H4 Mammary Epithelial Cell, donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11273-116H4.rna 11273-116H4.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"Cell Applications"; RNA lot number:"1691"; RNA Catalog number:"CA830-R10a"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:9.8; A260A280:2.11; A260A230:2.25 OP-SOLEXA-nanoCAGE-Direct-v1.4 865 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10048 NCig10048 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110513_HWUSI-EAS747_00039_FC_64GPCAAXX/ /sequencedata/Solexa/110513_HWUSI-EAS747_00039_FC_64GPCAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 female Mammary%20Epithelial%20Cell%2c%20donor1.NCig10048.11273-116H4.hg19.GCTATA.bam 11278-116H9 11278-116H9 Placental Epithelial Cells, donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11278-116H9.rna 11278-116H9.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"Cell Applications"; RNA lot number:"2628"; RNA Catalog number:"CA230-R10f"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:9.3; A260A280:2.09; A260A230:2.12 OP-SOLEXA-nanoCAGE-Direct-v1.4 865 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10049 NCig10049 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110513_HWUSI-EAS747_00039_FC_64GPCAAXX/ /sequencedata/Solexa/110513_HWUSI-EAS747_00039_FC_64GPCAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 male Placental%20Epithelial%20Cells%2c%20donor1.NCig10049.11278-116H9.hg19.GCTATA.bam 11282-116I4 11282-116I4 Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11282-116I4.rna 11282-116I4.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"Cell Applications"; RNA lot number:"1424"; RNA Catalog number:"CA150D-R10f"; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:9.8; A260A280:2.14; A260A230:2.19 OP-SOLEXA-nanoCAGE-Direct-v1.4 865 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10050 NCig10050 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110513_HWUSI-EAS747_00039_FC_64GPCAAXX/ /sequencedata/Solexa/110513_HWUSI-EAS747_00039_FC_64GPCAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 unknown_sex_type Skeletal%20muscle%20cells%20differentiated%20into%20Myotubes%20-%20multinucleated%2c%20donor1.NCig10050.11282-116I4.hg19.GCTATA.bam 11468-119C1 11468-119C1 Preadipocyte - omental, donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11468-119C1.rna 11468-119C1.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:"Zenbio"; cell lot:"lot:OM042105B"; cell catalog:"F-OP-F"; RNA lot number:""; RNA Catalog number:"N/A"; donor(cell lot):""; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:10; A260A280:1.98; A260A230:1.9 OP-SOLEXA-nanoCAGE-Direct-v1.4 865 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10051 NCig10051 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110513_HWUSI-EAS747_00039_FC_64GPCAAXX/ /sequencedata/Solexa/110513_HWUSI-EAS747_00039_FC_64GPCAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 female Preadipocyte%20-%20omental%2c%20donor1.NCig10051.11468-119C1.hg19.GCTATA.bam 11487-119E2 11487-119E2 Mast cell - stimulated, donor1 Homo sapiens GCTATA standard whole cell standard whole cell 11487-119E2.rna 11487-119E2.rna total RNA comment:Sample category:"FANTOM5 snapshot"; company:""; cell lot:""; cell catalog:""; RNA lot number:""; RNA Catalog number:""; donor(cell lot):""; rna_sample_type:total RNA; extract_method:standard whole cell; RIN:9.5; A260A280:2.17; A260A230:2.46 OP-SOLEXA-nanoCAGE-Direct-v1.4 865 OP-SOLEXA-nanoCAGE-Direct-v1.4 NCig10052 NCig10052 OP-Illumina-sequencing-PairedEnd-v3.0 OP-Illumina-sequencing-PairedEnd-v3.0 NA NA NA /sequencedata/Solexa/110513_HWUSI-EAS747_00039_FC_64GPCAAXX/ /sequencedata/Solexa/110513_HWUSI-EAS747_00039_FC_64GPCAAXX/ OP-WORKFLOW-CAGEscan-FANTOM5-v1.0 female Mast%20cell%20-%20stimulated%2c%20donor1.NCig10052.11487-119E2.hg19.GCTATA.bam