Match to: gi|17390825 Score: 195 Heterogenous nuclear ribonucleoprotein U [Mus musculus] Found in search of C:\Xcalibur\sequest\061_A080504_5.txt Nominal mass (Mr): 87918; Calculated pI value: 5.92 NCBI BLAST search of gi|17390825 against nr Unformatted sequence string for pasting into other applications Taxonomy: Mus musculus Variable modifications: Acetyl (N-term),Oxidation (M),Propionamide (C),Sulphone (M) Cleavage by Trypsin: cuts C-term side of KR unless next residue is P Sequence Coverage: 5% Matched peptides shown in Bold Red 1 MSSSPVNVKK LKVSELKEEL KKRRLSDKGL KADLMDRLQA ALDNEAGGRP 51 AMEPGNGSLD LGGDAAGRSG AGLEQEAAAG AEDDEEEEGI AALDGDQMEL 101 GEENGAAGAA DAGAMEEEEA ASEDENGDDQ GFQEGEDELG DEEEGAGDEN 151 GHGEQQSQPP AAAAQQQPSQ QRGAGKEAAG KSSGPTSLFA VTVAPPGARQ 201 GQQQAGGDGK TEQKGGDKKR GVKRPREDHG RGYFEYIEEN KYSRAKSPQP 251 PVEEEDEHFD DTVVCLDTYN CDLHFKISRD RLSASSLTME SFAFLWAGGR 301 ASYGVSKGKV CFEMKVTEKI PVRHLYTKDI DIHEVRIGWS LTTSGMLLGE 351 EEFSYGYSLK GIKTCNCETE DYGEKFDEND VITCFANFET DEVELSYAKN 401 GQDLGVAFKI SKEVLADRPL FPHVLCHNCA VEFNFGQKEK PYFPIPEDCT 451 FIQNVPLEDR VRGPKGPEEK KDCEVVMMIG LPGAGKTTWV TKHAAENPGK 501 YNILGTNTIM DKMMVAGFKK QMADTGKLNT LLQRAPQCLG KFIEIAARKK 551 RNFILDQTNV SAAAQRRKMC LFAGFQRKAV VVCPKDEDYK QRTQKKAEVE 601 GKDLPEHAVL KMKGNFTLPE VAECFDEITY VELQKEEAQK LLEQYKEESK 651 KALPPEKKQN TGSKKSNKNK SGKNQFNRGG GHRGRGGFNM RGGNFRGGAP 701 GNRGGYNRRG NMPQRGGGGG SGGIGYPYPR GPVFPGRGGY SNRGNYNRGG 751 MPNRGNYNQN FRGRGNNRGY KNQSQGYNQW QQGQFWGQKP WSQHYHQGYY 801
Residue Number Increasing Mass Decreasing Mass
Start - End Observed Mr(expt) Mr(calc) Delta Miss Sequence 182 - 199 858.49 1714.95 1714.94 0.01 0 SSGPTSLFAVTVAPPGAR (Ions score 45) 501 - 512 692.48 1382.95 1382.60 0.35 0 YNILGTNTIMDK (Ions score 52) 552 - 566 824.87 1647.72 1647.81 -0.08 0 NFILDQTNVSAAAQR (Ions score 106) LOCUS AAH18353 800 aa linear ROD 29-JUN-2004 DEFINITION Heterogenous nuclear ribonucleoprotein U [Mus musculus]. ACCESSION AAH18353 VERSION AAH18353.1 GI:17390825 DBSOURCE accession BC018353.1 KEYWORDS MGC. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus. REFERENCE 1 (residues 1 to 800) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (residues 1 to 800) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (03-DEC-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov/ COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Gilbert Smith, Ph.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov/ Series: IRAK Plate: 10 Row: g Column: 21 This clone was selected for full length sequencing because it passed the following selection criteria: GenomeScan gene prediction, Similarity but not identity to protein. Method: conceptual translation. FEATURES Location/Qualifiers source 1..800 /organism="Mus musculus" /strain="FVB/N" /db_xref="taxon:10090" /clone="MGC:5768 IMAGE:3584692" /tissue_type="Mammary tumor. Metallothionien-TGF alpha model. 10 month old virgin mouse. Taken by biopsy." /clone_lib="NCI_CGAP_Mam1" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" Protein 1..800 /product="heterogenous nuclear ribonucleoprotein U" CDS 1..800 /gene="Hnrpu" /coded_by="BC018353.1:59..2461" /db_xref="LocusID:51810" /db_xref="MGI:1858195"