Mascot Search Results

Protein View

Match to: gi|27369782 Score: 656
gem (nuclear organelle) associated protein 5; hypothetical protein C330013N08 [Mus musculus]
Found in search of C:\Xcalibur\sequest\059_B071604_4.txt

Nominal mass (Mr): 166562; Calculated pI value: 6.25
NCBI BLAST search of gi|27369782 against nr
Unformatted sequence string for pasting into other applications

Taxonomy: Mus musculus
Links to retrieve other entries containing this sequence from NCBI Entrez:
gi|34921723 from Mus musculus
gi|26339902 from Mus musculus

Variable modifications: Acetyl (N-term),Oxidation (M),Propionamide (C),Sulphone (M)
Cleavage by Trypsin: cuts C-term side of KR unless next residue is P
Sequence Coverage: 8%

Matched peptides shown in Bold Red

     1 MKPEPRTLPP SPNWYCSRCS DAAPGGIFGF AARTSVFLVR VGPGAGASPG 
    51 APPFRVVGEL VGHTERVSGF TFSHHPGQYN LCATSSDDGT VKVWDVETKT 
   101 VVTEHTLHQH TISALHWSPT VKDLIVSGDE KGVVFCYWLN RNDSQHLFTE 
   151 PRTIFCLTCS PHHENLVAIG YKDGIVVIID ISKKGEVIHR LRGHDDEIHS 
   201 IAWCPLSGED CLSISQEENS EEPDIPNGKL IAETPITKGC YLATGSKDQT 
   251 IRIWSCSRGR GVMVLKLPFL KRRSGGVDPT VKERLWLTLH WPKNQPTQLV 
   301 SSCFGGELLL WDLTQSWRRK YTLFSTSAEG HNHSRIVFNL CSLKTEDGKQ 
   351 LLLSTSMDRD VKCWDMATLE CCWTLPSLGG FAYSLAFSPV DVGSLAIGVG 
   401 DGMIRVWNTL SIKNNYDVKN FWQGVKSKVT ALCWHPNKEG CLAFGTDDGK 
   451 VGLYDTCSNK PPQISSTYHK KTVYRLAWGP PVPPMSLGGE GDRPSLTLYS 
   501 CGGEGVVLQH NPWKLSGEAF DINKLVRDTN SIRYKLPVHT EISWKGDGKV 
   551 LALGNEDGSI EIFQVPNLRL LCTIQQHHKL VNAIVWHHEH GSRPELSCLL 
   601 ASGSNNAVIY VHNLKAVLES NPESPITITE PYRTLSGHTA KITSLAWSPH 
   651 HDGRLVSACY DGTAQVWDAL REEPLFNFRG HRGRLLCVAW SPVDPECIYS 
   701 GADDFCVYRW LTSMQDHSRP PQGKKCIELE KKRLSQFKPK LKKKKKPTLR 
   751 LPVKQDSSVG NEDESVKENS GPAENGLSDQ DGEEEAQEPE LPPSPVVCVE 
   801 PVSCTDICSG FEKSKVTVSS KATSLKKEPA KEKPEALLKK RKARSMLPLS 
   851 TSLDHRSKEE LHRDCLVLAT ATHAKAELNE DVSADLEERF HLGLFTDRAT 
   901 LYRMMETEGK GHLESGHPEL FHQLMLWKGD LKGVLQAAAE RGELTDSLVA 
   951 VAPVAGYSVW LWAVEAFAKQ LCFQDQYVKA ASYLLSIHKV YEAVELLKSN 
  1001 HLYREAIAVA KARLRPEDPV LKELYLSWGS ILERDGHYAI AAKCYLGATS 
  1051 AYDAAKVLAR KGDAASLRTA AELAAIAGEH ELAASLALRC AQELLLMKNW 
  1101 VGAQEALGLH ESLQGQRLVF CLLELLCRHL EEKQPLEVRG PSSIYHQWAT 
  1151 GSEGTLVQRV TGVWRSAFSV DTPEQCQAAL QKLQDVKYPS ATSNTPFRQL 
  1201 LLHVCHDLTL AMLSQQAAAW EEAVPALLQA VVRSYASGNF TLMQEIYSAF 
  1251 LPGGCDHLRD KLGDLSPAMA AYKSLEAFCI YGQLYEVWWS LCGPGPESSV 
  1301 WVLSAESTVS DKQSKPEDSA SAEDMEQPPG PGPRLSAESE RLLSACKELF 
  1351 SERHASLQTS QRTVAEVQET LAEMIRQHQK SQLCKATTNG PSRDEPSRDE 
  1401 PSQEAERAPS QPPSPTEERN APVSLPELTR RLTEANERIA EFPESVKAWP 
  1451 FPDVLECCLV LLHIGSQCPD AVDPEMQQQA QELLHKYGHT RAYRRHCQSR 
  1501 HT

  Residue Number  Increasing Mass  Decreasing Mass 

 Start - End   Observed  Mr(expt) Mr(calc)   Delta   Miss Sequence
    34 - 40      411.70   821.39   820.99     0.41     0  TSVFLVR  (Ions score 39)
    41 - 55      669.87  1337.72  1337.50     0.21     0  VGPGAGASPGAPPFR  (Ions score 59)
    56 - 66      598.74  1195.46  1195.34     0.12     0  VVGELVGHTER  (Ions score 68)
   142 - 152     672.79  1343.56  1343.42     0.15     0  NDSQHLFTEPR  (Ions score 72)
   515 - 524     547.70  1093.38  1093.20     0.18     0  LSGEAFDINK  (Ions score 80)
   710 - 724     884.92  1767.83  1767.98    -0.15     0  WLTSMQDHSRPPQGK  (Ions score 43)
   845 - 856     679.57  1357.13  1356.56     0.57     0  SMLPLSTSLDHR  (Ions score 51)
   980 - 989     552.19  1102.37  1102.30     0.07     0  AASYLLSIHK  (Ions score 65)
  1262 - 1273    619.25  1236.49  1236.45     0.04     0  LGDLSPAMAAYK  (Ions score 66)
  1363 - 1376    795.66  1589.31  1589.82    -0.51     0  TVAEVQETLAEMIR  (Ions score 103)
  1420 - 1430    599.04  1196.06  1196.37    -0.31     0  NAPVSLPELTR  (Ions score 49)

Error Distribution


LOCUS NP_766146 1502 aa linear ROD 22-DEC-2003 DEFINITION gem (nuclear organelle) associated protein 5; hypothetical protein C330013N08 [Mus musculus]. ACCESSION NP_766146 VERSION NP_766146.1 GI:27369782 DBSOURCE REFSEQ: accession NM_172558.1 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus. REFERENCE 1 AUTHORS The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I & II Team. TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 2 AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y., Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S., Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I., Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R., Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T., Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H., Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G., Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M., Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H., Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N., Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C., Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D., Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P., Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P., Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H., Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H., Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L., Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S. and Hayashizaki,Y. TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409 (6821), 685-690 (2001) PUBMED 11217851 REFERENCE 3 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K. and Togawa,Y. TITLE RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10 (11), 1757-1771 (2000) PUBMED 11076861 REFERENCE 4 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10 (10), 1617-1630 (2000) PUBMED 11042159 REFERENCE 5 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) PUBMED 10349636 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AK049216.1. FEATURES Location/Qualifiers source 1..1502 /organism="Mus musculus" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="11" Protein 1..1502 /product="gem (nuclear organelle) associated protein 5" /note="hypothetical protein C330013N08" Region 57..408 /region_name="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly" /note="WD40" /db_xref="CDD:5398" Region 329..668 /region_name="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly" /note="WD40" /db_xref="CDD:5398" Region 631..>710 /region_name="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly" /note="WD40" /db_xref="CDD:5398" CDS 1..1502 /gene="Gemin5" /coded_by="NM_172558.1:22..4530" /note="go_component: spliceosome complex [goid 0005681] [evidence IEA]; go_component: nucleus [goid 0005634] [evidence IEA]; go_process: mRNA processing [goid 0006397] [evidence IEA]; go_process: nuclear mRNA splicing, via spliceosome [goid 0000398] [evidence IEA]" /db_xref="GeneID:216766" /db_xref="LocusID:216766" /db_xref="MGI:2449311"

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