CREATE portal

2016/03/16

HTTPS Site: https://dbarchive.biosciencedbc.jp/data/create-portal/

The database consists of InGap and InCep. InGap is the analysis of 274 mKIAA genes' expressions. InCep is the analysis of 50 mKIAA proteins' interactions.

README Content

  1. Database Component
  2. Data Description
  3. License
  4. Update History
  5. Literature
  6. Contact address

1. Database Component

  1. README
  2. InGaP
  3. InCeP
  4. InCeP images
  5. KeyMolnet data
  6. Mascot search results
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2. Data Description

2.1 README

Data name README
Description of data contents HTML file to describe "CREATE portal" data.
File README_e.html(English)
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2.2 InGaP

Data name InGaP
Description of data contents Expression of mKIAA genes in mouse organs and cell lines.
File create_portal_ingap.zip (57.6 KB)

Data items are the following:
Data itemDescription
mKIAA No. Gene number of mouse KIAA
Clone name Name of the clone
Accession No. Accession number for DDBJ/GenBank/EMBL database
Alias Name Gene name
Antigen size Size of the antigen
Antigen solubility Solubility of the antigen
Homolog human clone Clone name for the human homolog
Reference protein Reference protein
Predicted molecular weight Predicted molecular weight
Predicted gene function Predicted gene function (Gene Ontology number)
Antigen sequence name Name of the antigen
Antigen sequence Amino acids sequence of the antigen
Purification tag Status of the purification tag
Western blot (adult organs) Results of the Western blot (adult mouse organs)
Western blot (cell lines) Results of the Western blot (Cultured cell lines)
Infrared Fluorescence scanner (cerebellum) Observation by Infrared Fluorescence scanner (cerebellum)
Infrared Fluorescence scanner (forebrain 1) Observation by Infrared Fluorescence scanner (forebrain 1)
Infrared Fluorescence scanner (forebrain 2) Observation by Infrared Fluorescence scanner (forebrain 2)
Confocal laser scanning microscope (neocortex 1) Observation by Confocal laser scanning microscope (neocortex 1)
Confocal laser scanning microscope (neocortex 2) Observation by Confocal laser scanning microscope (neocortex 2)
Confocal laser scanning microscope (hippocampus) Observation by Confocal laser scanning microscope (hippocampus)
Confocal laser scanning microscope (cerebellum) Observation by Confocal laser scanning microscope (cerebellum)
Immunoprecipitation Results of the immunoprecipitation
Mascot search results Results of the Mascot search in MS
Ectopic expression (phase) Expression of KIAA gene in HEK293 cells (phase)
Ectopic expression (fluoro) Expression of KIAA gene in HEK293 cells (fluoro)
mKIAA cDNA array analysis Results of mKIAA cDNA array analysis
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2.3 InCeP

Data name InCeP
Description of data contents mKIAA intracellular signaling pathway.
File create_portal_incep.zip (1 KB)

Data items are the following:
Data itemDescription
mKIAA No. Gene number of mouse KIAA
Pathway image Image for the signal transduction pathway
KeyMolnet file File derived from KeyMolnet software
Reference Related research paper
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2.4 InCeP images

Data name InCeP images
Description of data contents Image files of mKIAA intracellular signaling pathway.
File create_portal_images.zip (13.4 MB)
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2.5 KeyMolnet data

Data name KeyMolnet data
Description of data contents KeyMolnet files of mKIAA intracellular signaling pathway.
File create_portal_keymolnet.zip (7.1 MB)
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2.6 Mascot search results

Data name Mascot search results
Description of data contents Mascot search result files.
File create_portal_mascot.zip (321 KB)
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3. License

Last updated : 2016/03/16

You may use this database in compliance with the terms and conditions of the license described below. The license specifies the license terms regarding the use of this database and the requirements you must follow in using this database.

Creative Commons License

The license for this database is specified in the Creative Commons Attribution-Share Alike 4.0 International.
If you use data from this database, please be sure attribute this database as follows: "CREATE portal © Hisashi Koga (Kazusa DNA Research Institute) licensed under CC Attribution-Share Alike 4.0 International".

The summary of the Creative Commons Attribution-Share Alike 4.0 International is found here.

With regard to this database, you are licensed to:

  1. freely access part or whole of this database, and acquire data;
  2. freely redistribute part or whole of the data from this database; and
  3. freely create and distribute database and other adapted materials based on part or whole of the data from this database,

under the license, as long as you comply with the following conditions:

  1. You must attribute this database in the manner specified by the author or licensor when distributing part or whole of this database or any adapted material.
  2. You must distribute any adapted material based on part or whole of the data from this database under CC Attribution-Share Alike 4.0 (or later), or CC Attribution-Share Alike Compatible License (the list is here).
  3. You need to contact the Licensor shown below to request a license for use of this database or any part thereof not licensed under the license.

2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan
Kazusa DNA Research Institute

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4. Update History

DateUpdate contents
2016/03/16 CREATE portal English archive site is opened.
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5. Literature

Koga H, Yuasa S, Nagase T, Shimada K, Nagano M, Imai K, Ohara R, Nakajima D, Murakami M, Kawai M, Miki F, Magae J, Inamoto S, Okazaki N, Ohara O.
A comprehensive approach for establishment of the platform to analyze functions of KIAA proteins II: public release of inaugural version of InGaP database containing gene/protein expression profiles for 127 mouse KIAA genes/proteins
DNA Res. 2004 Aug 31;11(4):293-304.
PMID: 15500254

Murakami M, Shimada K, Kawai M, Koga H.
InCeP: intracellular pathway based on mKIAA protein-protein interactions
DNA Res. 2005;12(5):379-87.
PMID: 16769695

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6. Contact address

When you have any question about "CREATE portal", contact the following:

2-6-7 Kazusa-Kamatari, Kisarazu, Chiba 292-0818, Japan
Kazusa DNA Research Institute

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