Mascot Search Results

Protein View

Match to: gi|28523341 Score: 181
RIKEN cDNA 9530020G05 [Mus musculus]
Found in search of C:\Xcalibur\sequest\061_A080604_10.txt

Nominal mass (Mr): 83421; Calculated pI value: 6.20
NCBI BLAST search of gi|28523341 against nr
Unformatted sequence string for pasting into other applications

Taxonomy: Mus musculus
Links to retrieve other entries containing this sequence from NCBI Entrez:
gi|32967629 from Mus musculus

Variable modifications: Acetyl (N-term),Oxidation (M),Propionamide (C),Sulphone (M)
Cleavage by Trypsin: cuts C-term side of KR unless next residue is P
Sequence Coverage: 7%

Matched peptides shown in Bold Red

     1 MAEAVERTDE LVREYLLFRG FTHTLRQLDA EIKADKEKGF RVDKIVDQLQ 
    51 QLMQVYDLAA LRDYWSYLER RLFSRLEDIY RPTINKLKTS LFRFYLVYTI 
   101 QTNRNDKAQE FFAKQATELQ NQAEWKDWFV LPFLPSPDTN PTFATYFSRQ 
   151 WADTFIISLH NFLSVLFQCM PVPVILNFDA ECQRTNQVQE ENEVLRQKLF 
   201 ALQAEIHRLK KEEQQQEEEA AALVQHKLPP YVSSMDRLGD SELALVCSQR 
   251 PASLSQSPRV GFLSSLLPQS KKSPSRLSPA QGPPQAQSSA KKDSFSSQAT 
   301 KGKDSVPGAK DGKSLLSGPV PGEASWTHQR QRRLQDHGKE RRELLSTSSS 
   351 QSQCAERKPE VSGAEAEPCL ELHMGPVEVL ARVSTAGSEG DRPEQPFIVL 
   401 SQEEYGEHHS SIMHCRVDCS GRRVASLDVD GVIKVWSFNP IMQTKASSIS 
   451 KSPLLSLEWA TKRDRLLLLG SGVGTVRLYD TEAKKNLCEI NINDDMPRIL 
   501 SLACSPNGAS FVCSAAAPSL TSQTDSSAPD IGSKGMNQVP GKLLLWDTKT 
   551 MKQQLQFSLD PEPIAINCTA FNHNGNLLVT GAADGVIRLF DMQQHECAMS 
   601 WKAHCGEVYS VEFSCDENAV YSIGEDRKFI QWNIHKSGLK VSESNLPSDA 
   651 TGPFVLSGYS GYKQVQVPRG RLFAFDSEGN YMLTCSATGG LIYKLGSEEK 
   701 VLENCLSLGG HRAPVVTVDW STAMDCGTCL TASMDGKIKL TTLLAHKL

  Residue Number  Increasing Mass  Decreasing Mass 

 Start - End   Observed  Mr(expt) Mr(calc)   Delta   Miss Sequence
   277 - 291     734.45  1466.89  1466.61     0.27     0  LSPAQGPPQAQSSAK  (Ions score 62)
   314 - 330     911.90  1821.78  1822.01    -0.23     0  SLLSGPVPGEASWTHQR  (Ions score 85)
   641 - 663    1188.71  2375.41  2375.57    -0.17     0  VSESNLPSDATGPFVLSGYSGYK  (Ions score 35)

Error Distribution


LOCUS XP_145240 748 aa linear ROD 30-OCT-2003 DEFINITION RIKEN cDNA 9530020G05 [Mus musculus]. ACCESSION XP_145240 VERSION XP_145240.4 GI:28523341 DBSOURCE REFSEQ: accession XM_145240.5 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from an annotated genomic sequence (NT_039341) using gene prediction method: GNOMON, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 24, 2003 this sequence version replaced gi:25093575. FEATURES Location/Qualifiers source 1..748 /organism="Mus musculus" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="6" Protein 1..748 /product="RIKEN cDNA 9530020G05" Region 408..740 /region_name="FOG: WD40 repeat [General function prediction only]" /note="COG2319" /db_xref="CDD:COG2319" Region 409..644 /region_name="FOG: WD40 repeat [General function prediction only]" /note="COG2319" /db_xref="CDD:COG2319" Region 514..678 /region_name="FOG: WD40-like repeat [Function unknown]" /note="COG1520" /db_xref="CDD:COG1520" Region 554..591 /region_name="WD domain, G-beta repeat" /note="WD40" /db_xref="CDD:pfam00400" Region 565..591 /region_name="WD40 repeats" /note="WD40" /db_xref="CDD:smart00320" CDS 1..748 /gene="9530020G05Rik" /coded_by="XM_145240.5:24..2270" /db_xref="GeneID:101240" /db_xref="LocusID:101240" /db_xref="MGI:2141558"

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