Mascot Search Results

Protein View

Match to: gi|28893521 Score: 130
gem (nuclear organelle) associated protein 4 [Mus musculus]
Found in search of C:\Xcalibur\sequest\059_B071604_6.txt

Nominal mass (Mr): 120210; Calculated pI value: 5.05
NCBI BLAST search of gi|28893521 against nr
Unformatted sequence string for pasting into other applications

Taxonomy: Mus musculus
Links to retrieve other entries containing this sequence from NCBI Entrez:
gi|21619389 from Mus musculus

Variable modifications: Acetyl (N-term),Oxidation (M),Propionamide (C),Sulphone (M)
Cleavage by Trypsin: cuts C-term side of KR unless next residue is P
Sequence Coverage: 2%

Matched peptides shown in Bold Red

     1 MDLGPLNICE EMTILHGGFL MAEQLFHPKA LVQLTKSDWE HVGQPIVEAL 
    51 KEISSATAHS QPFAWKKKAL IIIWTKVLQP SPVSPSDTDT RWQEDVFFSV 
   101 GSMIPTINHT VLFELLKSLE ASGLFIQLLM ALPTTIGRSE LQSFLEHMTV 
   151 DTSSKDVAFF LDVWWEMMKH KGDQQDPLLS QFRTMAHKYL PSSDEFSHPP 
   201 KRFKSDPDVG PTMPLLAMLL TGLKQIQKRI LSLEMKCCAL ANLADMLSVF 
   251 ALLEDDTQEV SATVYLDKLA TVISVWNSDT QNPYHRQALA DKVKEAERDV 
   301 SLTSLAKLPS ETVFMGFELM YNLLQEWGAE LQDMLNSSQG TNYDTYRLCD 
   351 SLTSFSQNLE LYLDTTNMPK EEREVVSELA ECVRDFLRKT SRMLNDKGLE 
   401 DITASIAMAI IEQKMDRHME MCYIFASEKK WAFSDEWVAC LVNNRSLFRE 
   451 PDLVLSLLET VMEVISSDRV IPQPQIKQVI CLTLECYEDL SLPDKNKVLS 
   501 GVLHYLGPKG LSDRLSDYLE GFQEDLNTTF NQLAQSTSEQ GLAKAVASVA 
   551 HLVILNPEVV VKKMCSLAVT NLGTHRFLAQ ILTAFPALKF TEEQGANPCT 
   601 SFMVSCLKET VWTKFSTPKE EKQFLELVSC LTNPVKPQGI PVAALLEPDE 
   651 VLKEFVLPFL MLDMEEVGLS LKLFIQTLEA NAGLEEYWLQ TCSPFPLLFS 
   701 LCQLLDSFSK FWQLPREKRY LTLDSKDLVT HILELLCEIV LANTETFSPD 
   751 TWAKSLSWLH RKLDQLDWTV GLRLKNFFEG HFKCEVPATL FDICKLSEAQ 
   801 WTSQVHEGYG PGTGLLAWME CCSVSSSISD QMLSLLVMDV GNPEEVRLFS 
   851 KGFLVALVQV MPWCSPQEWQ YLQQLTRKLL EKQLLHVPYS LEYIQFVPLL 
   901 NLKPFAQELQ LSVLSLRVFQ FLCSQSCCNW LPLDGWSHVV KLLCNSLTSV 
   951 LDAVRLMQSV GPWAQGQKGD LTQETLFVYT QMFCHVLHIM AMLPQEVCEP 
  1001 LYVLALEILT CYETLSKSNP SVSSLLQKVD EQRFLKSIAK NISPEERRQT 
  1051 LLQKINNF

  Residue Number  Increasing Mass  Decreasing Mass 

 Start - End   Observed  Mr(expt) Mr(calc)   Delta   Miss Sequence
    77 - 91      800.38  1598.74  1598.73     0.01     0  VLQPSPVSPSDTDTR  (Ions score 71)
  1018 - 1028    580.64  1159.27  1159.31    -0.03     0  SNPSVSSLLQK  (Ions score 62)

Error Distribution


LOCUS NP_796341 1058 aa linear ROD 22-DEC-2003 DEFINITION gem (nuclear organelle) associated protein 4 [Mus musculus]. ACCESSION NP_796341 VERSION NP_796341.1 GI:28893521 DBSOURCE REFSEQ: accession NM_177367.2 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus. REFERENCE 1 (residues 1 to 1058) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (residues 1 to 1058) AUTHORS Kawai,J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y., Arakawa,T., Hara,A., Fukunishi,Y., Konno,H., Adachi,J., Fukuda,S., Aizawa,K., Izawa,M., Nishi,K., Kiyosawa,H., Kondo,S., Yamanaka,I., Saito,T., Okazaki,Y., Gojobori,T., Bono,H., Kasukawa,T., Saito,R., Kadota,K., Matsuda,H., Ashburner,M., Batalov,S., Casavant,T., Fleischmann,W., Gaasterland,T., Gissi,C., King,B., Kochiwa,H., Kuehl,P., Lewis,S., Matsuo,Y., Nikaido,I., Pesole,G., Quackenbush,J., Schriml,L.M., Staubli,F., Suzuki,R., Tomita,M., Wagner,L., Washio,T., Sakai,K., Okido,T., Furuno,M., Aono,H., Baldarelli,R., Barsh,G., Blake,J., Boffelli,D., Bojunga,N., Carninci,P., de Bonaldo,M.F., Brownstein,M.J., Bult,C., Fletcher,C., Fujita,M., Gariboldi,M., Gustincich,S., Hill,D., Hofmann,M., Hume,D.A., Kamiya,M., Lee,N.H., Lyons,P., Marchionni,L., Mashima,J., Mazzarelli,J., Mombaerts,P., Nordone,P., Ring,B., Ringwald,M., Rodriguez,I., Sakamoto,N., Sasaki,H., Sato,K., Schonbach,C., Seya,T., Shibata,Y., Storch,K.F., Suzuki,H., Toyo-oka,K., Wang,K.H., Weitz,C., Whittaker,C., Wilming,L., Wynshaw-Boris,A., Yoshida,K., Hasegawa,Y., Kawaji,H., Kohtsuki,S. and Hayashizaki,Y. TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409 (6821), 685-690 (2001) PUBMED 11217851 REFERENCE 3 (residues 1 to 1058) AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K. and Togawa,Y. TITLE RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10 (11), 1757-1771 (2000) PUBMED 11076861 REFERENCE 4 (residues 1 to 1058) AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10 (10), 1617-1630 (2000) PUBMED 11042159 REFERENCE 5 (residues 1 to 1058) AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) PUBMED 10349636 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC031425.1. FEATURES Location/Qualifiers source 1..1058 /organism="Mus musculus" /strain="CZECHII" /db_xref="taxon:10090" /chromosome="11" Protein 1..1058 /product="gem (nuclear organelle) associated protein 4" CDS 1..1058 /gene="Gemin4" /coded_by="NM_177367.2:26..3202" /db_xref="GeneID:276919" /db_xref="LocusID:276919" /db_xref="MGI:2449313"

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