Job ID = 9163648 sra ファイルのダウンロード中... Completed: 4483K bytes transferred in 2 seconds (13456K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 182804 spots for /home/okishinya/chipatlas/results/sacCer3/SRX977487/SRR1951333.sra Written 182804 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:00:01 182804 reads; of these: 182804 (100.00%) were unpaired; of these: 112352 (61.46%) aligned 0 times 60741 (33.23%) aligned exactly 1 time 9711 (5.31%) aligned >1 times 38.54% overall alignment rate Time searching: 00:00:01 Overall time: 00:00:01 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 68040 / 70452 = 0.9658 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。 INFO @ Wed, 28 Jun 2017 11:10:53: # Command line: callpeak -t SRX977487.bam -f BAM -g 12100000 -n SRX977487.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX977487.20 # format = BAM # ChIP-seq file = ['SRX977487.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 11:10:53: #1 read tag files... INFO @ Wed, 28 Jun 2017 11:10:53: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 11:10:53: # Command line: callpeak -t SRX977487.bam -f BAM -g 12100000 -n SRX977487.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX977487.10 # format = BAM # ChIP-seq file = ['SRX977487.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 11:10:53: #1 read tag files... INFO @ Wed, 28 Jun 2017 11:10:53: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 11:10:53: # Command line: callpeak -t SRX977487.bam -f BAM -g 12100000 -n SRX977487.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX977487.05 # format = BAM # ChIP-seq file = ['SRX977487.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 11:10:53: #1 read tag files... INFO @ Wed, 28 Jun 2017 11:10:53: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 11:10:53: #1 tag size is determined as 40 bps INFO @ Wed, 28 Jun 2017 11:10:53: #1 tag size = 40 INFO @ Wed, 28 Jun 2017 11:10:53: #1 total tags in treatment: 2412 INFO @ Wed, 28 Jun 2017 11:10:53: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 11:10:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 11:10:53: #1 tag size is determined as 40 bps INFO @ Wed, 28 Jun 2017 11:10:53: #1 tag size = 40 INFO @ Wed, 28 Jun 2017 11:10:53: #1 total tags in treatment: 2412 INFO @ Wed, 28 Jun 2017 11:10:53: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 11:10:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 11:10:53: #1 tag size is determined as 40 bps INFO @ Wed, 28 Jun 2017 11:10:53: #1 tag size = 40 INFO @ Wed, 28 Jun 2017 11:10:53: #1 total tags in treatment: 2412 INFO @ Wed, 28 Jun 2017 11:10:53: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 11:10:53: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 11:10:53: #1 tags after filtering in treatment: 2410 INFO @ Wed, 28 Jun 2017 11:10:53: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 11:10:53: #1 finished! INFO @ Wed, 28 Jun 2017 11:10:53: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 11:10:53: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 11:10:53: #1 tags after filtering in treatment: 2410 INFO @ Wed, 28 Jun 2017 11:10:53: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 11:10:53: #1 finished! INFO @ Wed, 28 Jun 2017 11:10:53: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 11:10:53: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 11:10:53: #1 tags after filtering in treatment: 2410 INFO @ Wed, 28 Jun 2017 11:10:53: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 11:10:53: #1 finished! INFO @ Wed, 28 Jun 2017 11:10:53: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 11:10:53: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 11:10:53: #2 number of paired peaks: 79 WARNING @ Wed, 28 Jun 2017 11:10:53: Too few paired peaks (79) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 11:10:53: Process for pairing-model is terminated! INFO @ Wed, 28 Jun 2017 11:10:53: #2 number of paired peaks: 79 WARNING @ Wed, 28 Jun 2017 11:10:53: Too few paired peaks (79) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 11:10:53: Process for pairing-model is terminated! INFO @ Wed, 28 Jun 2017 11:10:53: #2 number of paired peaks: 79 WARNING @ Wed, 28 Jun 2017 11:10:53: Too few paired peaks (79) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 11:10:53: Process for pairing-model is terminated! cat: SRX977487.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません cat: SRX977487.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません cat: SRX977487.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX977487.20_model.r'rm: cannot remove `SRX977487.10_model.r': そのようなファイルやディレクトリはありません : そのようなファイルやディレクトリはありませんrm: cannot remove `SRX977487.20_*.xls': そのようなファイルやディレクトリはありません rm: rm: cannot remove `SRX977487.20_peaks.narrowPeak'cannot remove `SRX977487.10_*.xls': そのようなファイルやディレクトリはありません: そのようなファイルやディレクトリはありません rm: cannot remove `SRX977487.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling pass1 - making usageList (0 chroms): 1 millis CompletedMACS2peakCalling needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX977487.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX977487.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX977487.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling