Job ID = 9163576 sra ファイルのダウンロード中... Completed: 916990K bytes transferred in 11 seconds (634018K bits/sec), in 1 file, 2 directories. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 29956103 spots for /home/okishinya/chipatlas/results/sacCer3/SRX964202/SRR1924309.sra Written 29956103 spots total rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:05:03 29956103 reads; of these: 29956103 (100.00%) were unpaired; of these: 3675919 (12.27%) aligned 0 times 22457833 (74.97%) aligned exactly 1 time 3822351 (12.76%) aligned >1 times 87.73% overall alignment rate Time searching: 00:05:03 Overall time: 00:05:03 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 12 files... [bam_rmdupse_core] 12202124 / 26280184 = 0.4643 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Wed, 28 Jun 2017 11:09:58: # Command line: callpeak -t SRX964202.bam -f BAM -g 12100000 -n SRX964202.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX964202.10 # format = BAM # ChIP-seq file = ['SRX964202.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 11:09:58: #1 read tag files... INFO @ Wed, 28 Jun 2017 11:09:58: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 11:09:58: # Command line: callpeak -t SRX964202.bam -f BAM -g 12100000 -n SRX964202.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX964202.20 # format = BAM # ChIP-seq file = ['SRX964202.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 11:09:58: #1 read tag files... INFO @ Wed, 28 Jun 2017 11:09:58: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 11:09:58: # Command line: callpeak -t SRX964202.bam -f BAM -g 12100000 -n SRX964202.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX964202.05 # format = BAM # ChIP-seq file = ['SRX964202.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 28 Jun 2017 11:09:58: #1 read tag files... INFO @ Wed, 28 Jun 2017 11:09:58: #1 read treatment tags... INFO @ Wed, 28 Jun 2017 11:10:04: 1000000 INFO @ Wed, 28 Jun 2017 11:10:05: 1000000 INFO @ Wed, 28 Jun 2017 11:10:05: 1000000 INFO @ Wed, 28 Jun 2017 11:10:11: 2000000 INFO @ Wed, 28 Jun 2017 11:10:13: 2000000 INFO @ Wed, 28 Jun 2017 11:10:13: 2000000 INFO @ Wed, 28 Jun 2017 11:10:18: 3000000 INFO @ Wed, 28 Jun 2017 11:10:21: 3000000 INFO @ Wed, 28 Jun 2017 11:10:21: 3000000 INFO @ Wed, 28 Jun 2017 11:10:25: 4000000 INFO @ Wed, 28 Jun 2017 11:10:29: 4000000 INFO @ Wed, 28 Jun 2017 11:10:29: 4000000 INFO @ Wed, 28 Jun 2017 11:10:32: 5000000 INFO @ Wed, 28 Jun 2017 11:10:37: 5000000 INFO @ Wed, 28 Jun 2017 11:10:37: 5000000 INFO @ Wed, 28 Jun 2017 11:10:39: 6000000 INFO @ Wed, 28 Jun 2017 11:10:45: 6000000 INFO @ Wed, 28 Jun 2017 11:10:45: 6000000 INFO @ Wed, 28 Jun 2017 11:10:45: 7000000 INFO @ Wed, 28 Jun 2017 11:10:52: 8000000 INFO @ Wed, 28 Jun 2017 11:10:52: 7000000 INFO @ Wed, 28 Jun 2017 11:10:52: 7000000 INFO @ Wed, 28 Jun 2017 11:10:59: 9000000 INFO @ Wed, 28 Jun 2017 11:11:00: 8000000 INFO @ Wed, 28 Jun 2017 11:11:00: 8000000 INFO @ Wed, 28 Jun 2017 11:11:06: 10000000 INFO @ Wed, 28 Jun 2017 11:11:08: 9000000 INFO @ Wed, 28 Jun 2017 11:11:08: 9000000 INFO @ Wed, 28 Jun 2017 11:11:13: 11000000 INFO @ Wed, 28 Jun 2017 11:11:16: 10000000 INFO @ Wed, 28 Jun 2017 11:11:16: 10000000 INFO @ Wed, 28 Jun 2017 11:11:20: 12000000 INFO @ Wed, 28 Jun 2017 11:11:23: 11000000 INFO @ Wed, 28 Jun 2017 11:11:23: 11000000 INFO @ Wed, 28 Jun 2017 11:11:27: 13000000 INFO @ Wed, 28 Jun 2017 11:11:31: 12000000 INFO @ Wed, 28 Jun 2017 11:11:31: 12000000 INFO @ Wed, 28 Jun 2017 11:11:33: 14000000 INFO @ Wed, 28 Jun 2017 11:11:34: #1 tag size is determined as 49 bps INFO @ Wed, 28 Jun 2017 11:11:34: #1 tag size = 49 INFO @ Wed, 28 Jun 2017 11:11:34: #1 total tags in treatment: 14078060 INFO @ Wed, 28 Jun 2017 11:11:34: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 11:11:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 11:11:34: #1 tags after filtering in treatment: 14078060 INFO @ Wed, 28 Jun 2017 11:11:34: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 11:11:34: #1 finished! INFO @ Wed, 28 Jun 2017 11:11:34: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 11:11:34: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 11:11:35: #2 number of paired peaks: 0 WARNING @ Wed, 28 Jun 2017 11:11:35: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 11:11:35: Process for pairing-model is terminated! cat: SRX964202.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX964202.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX964202.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX964202.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Wed, 28 Jun 2017 11:11:39: 13000000 INFO @ Wed, 28 Jun 2017 11:11:39: 13000000 INFO @ Wed, 28 Jun 2017 11:11:47: 14000000 INFO @ Wed, 28 Jun 2017 11:11:47: 14000000 INFO @ Wed, 28 Jun 2017 11:11:47: #1 tag size is determined as 49 bps INFO @ Wed, 28 Jun 2017 11:11:47: #1 tag size = 49 INFO @ Wed, 28 Jun 2017 11:11:47: #1 total tags in treatment: 14078060 INFO @ Wed, 28 Jun 2017 11:11:47: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 11:11:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 11:11:47: #1 tag size is determined as 49 bps INFO @ Wed, 28 Jun 2017 11:11:47: #1 tag size = 49 INFO @ Wed, 28 Jun 2017 11:11:47: #1 total tags in treatment: 14078060 INFO @ Wed, 28 Jun 2017 11:11:47: #1 user defined the maximum tags... INFO @ Wed, 28 Jun 2017 11:11:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 28 Jun 2017 11:11:47: #1 tags after filtering in treatment: 14078060 INFO @ Wed, 28 Jun 2017 11:11:47: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 11:11:47: #1 finished! INFO @ Wed, 28 Jun 2017 11:11:47: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 11:11:47: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 11:11:47: #1 tags after filtering in treatment: 14078060 INFO @ Wed, 28 Jun 2017 11:11:47: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 28 Jun 2017 11:11:47: #1 finished! INFO @ Wed, 28 Jun 2017 11:11:47: #2 Build Peak Model... INFO @ Wed, 28 Jun 2017 11:11:47: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 28 Jun 2017 11:11:48: #2 number of paired peaks: 0 WARNING @ Wed, 28 Jun 2017 11:11:48: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 11:11:48: Process for pairing-model is terminated! cat: SRX964202.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX964202.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX964202.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX964202.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Wed, 28 Jun 2017 11:11:48: #2 number of paired peaks: 0 WARNING @ Wed, 28 Jun 2017 11:11:48: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 28 Jun 2017 11:11:48: Process for pairing-model is terminated! cat: SRX964202.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX964202.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX964202.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX964202.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。