Job ID = 14520754 SRX = SRX9431315 Genome = sacCer3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 4043623 spots for SRR12979608/SRR12979608.sra Written 4043623 spots for SRR12979608/SRR12979608.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:00:35 4043623 reads; of these: 4043623 (100.00%) were unpaired; of these: 340527 (8.42%) aligned 0 times 3251747 (80.42%) aligned exactly 1 time 451349 (11.16%) aligned >1 times 91.58% overall alignment rate Time searching: 00:00:35 Overall time: 00:00:35 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 827158 / 3703096 = 0.2234 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 19:49:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 19:49:31: #1 read tag files... INFO @ Sat, 15 Jan 2022 19:49:31: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 19:49:37: 1000000 INFO @ Sat, 15 Jan 2022 19:49:42: 2000000 INFO @ Sat, 15 Jan 2022 19:49:47: #1 tag size is determined as 65 bps INFO @ Sat, 15 Jan 2022 19:49:47: #1 tag size = 65 INFO @ Sat, 15 Jan 2022 19:49:47: #1 total tags in treatment: 2875938 INFO @ Sat, 15 Jan 2022 19:49:47: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 19:49:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 19:49:47: #1 tags after filtering in treatment: 2875938 INFO @ Sat, 15 Jan 2022 19:49:47: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 19:49:47: #1 finished! INFO @ Sat, 15 Jan 2022 19:49:47: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 19:49:47: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 19:49:48: #2 number of paired peaks: 89 WARNING @ Sat, 15 Jan 2022 19:49:48: Too few paired peaks (89) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 19:49:48: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 19:50:01: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 19:50:01: #1 read tag files... INFO @ Sat, 15 Jan 2022 19:50:01: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 19:50:06: 1000000 INFO @ Sat, 15 Jan 2022 19:50:12: 2000000 INFO @ Sat, 15 Jan 2022 19:50:16: #1 tag size is determined as 65 bps INFO @ Sat, 15 Jan 2022 19:50:16: #1 tag size = 65 INFO @ Sat, 15 Jan 2022 19:50:16: #1 total tags in treatment: 2875938 INFO @ Sat, 15 Jan 2022 19:50:16: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 19:50:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 19:50:16: #1 tags after filtering in treatment: 2875938 INFO @ Sat, 15 Jan 2022 19:50:16: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 19:50:16: #1 finished! INFO @ Sat, 15 Jan 2022 19:50:16: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 19:50:16: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 19:50:16: #2 number of paired peaks: 89 WARNING @ Sat, 15 Jan 2022 19:50:16: Too few paired peaks (89) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 19:50:16: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 19:50:31: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 19:50:31: #1 read tag files... INFO @ Sat, 15 Jan 2022 19:50:31: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 19:50:36: 1000000 INFO @ Sat, 15 Jan 2022 19:50:41: 2000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 15 Jan 2022 19:50:46: #1 tag size is determined as 65 bps INFO @ Sat, 15 Jan 2022 19:50:46: #1 tag size = 65 INFO @ Sat, 15 Jan 2022 19:50:46: #1 total tags in treatment: 2875938 INFO @ Sat, 15 Jan 2022 19:50:46: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 19:50:46: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 19:50:46: #1 tags after filtering in treatment: 2875938 INFO @ Sat, 15 Jan 2022 19:50:46: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 19:50:46: #1 finished! INFO @ Sat, 15 Jan 2022 19:50:46: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 19:50:46: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 19:50:46: #2 number of paired peaks: 89 WARNING @ Sat, 15 Jan 2022 19:50:46: Too few paired peaks (89) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 19:50:46: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431315/SRX9431315.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BigWig に変換しました。