Job ID = 14521180 SRX = SRX9431291 Genome = sacCer3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 10989667 spots for SRR12979585/SRR12979585.sra Written 10989667 spots for SRR12979585/SRR12979585.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:57 10989667 reads; of these: 10989667 (100.00%) were unpaired; of these: 618401 (5.63%) aligned 0 times 8961097 (81.54%) aligned exactly 1 time 1410169 (12.83%) aligned >1 times 94.37% overall alignment rate Time searching: 00:01:57 Overall time: 00:01:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 5867983 / 10371266 = 0.5658 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 20:38:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 20:38:45: #1 read tag files... INFO @ Sat, 15 Jan 2022 20:38:45: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 20:38:50: 1000000 INFO @ Sat, 15 Jan 2022 20:38:56: 2000000 INFO @ Sat, 15 Jan 2022 20:39:01: 3000000 INFO @ Sat, 15 Jan 2022 20:39:07: 4000000 INFO @ Sat, 15 Jan 2022 20:39:10: #1 tag size is determined as 66 bps INFO @ Sat, 15 Jan 2022 20:39:10: #1 tag size = 66 INFO @ Sat, 15 Jan 2022 20:39:10: #1 total tags in treatment: 4503283 INFO @ Sat, 15 Jan 2022 20:39:10: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 20:39:10: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 20:39:10: #1 tags after filtering in treatment: 4503283 INFO @ Sat, 15 Jan 2022 20:39:10: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 20:39:10: #1 finished! INFO @ Sat, 15 Jan 2022 20:39:10: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 20:39:10: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 20:39:10: #2 number of paired peaks: 29 WARNING @ Sat, 15 Jan 2022 20:39:10: Too few paired peaks (29) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 20:39:10: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 20:39:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 20:39:15: #1 read tag files... INFO @ Sat, 15 Jan 2022 20:39:15: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 20:39:19: 1000000 INFO @ Sat, 15 Jan 2022 20:39:24: 2000000 INFO @ Sat, 15 Jan 2022 20:39:29: 3000000 INFO @ Sat, 15 Jan 2022 20:39:34: 4000000 INFO @ Sat, 15 Jan 2022 20:39:36: #1 tag size is determined as 66 bps INFO @ Sat, 15 Jan 2022 20:39:36: #1 tag size = 66 INFO @ Sat, 15 Jan 2022 20:39:36: #1 total tags in treatment: 4503283 INFO @ Sat, 15 Jan 2022 20:39:36: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 20:39:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 20:39:36: #1 tags after filtering in treatment: 4503283 INFO @ Sat, 15 Jan 2022 20:39:36: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 20:39:36: #1 finished! INFO @ Sat, 15 Jan 2022 20:39:36: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 20:39:36: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 20:39:37: #2 number of paired peaks: 29 WARNING @ Sat, 15 Jan 2022 20:39:37: Too few paired peaks (29) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 20:39:37: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 20:39:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 20:39:45: #1 read tag files... INFO @ Sat, 15 Jan 2022 20:39:45: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 20:39:51: 1000000 INFO @ Sat, 15 Jan 2022 20:39:56: 2000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 15 Jan 2022 20:40:02: 3000000 INFO @ Sat, 15 Jan 2022 20:40:08: 4000000 BigWig に変換しました。 INFO @ Sat, 15 Jan 2022 20:40:11: #1 tag size is determined as 66 bps INFO @ Sat, 15 Jan 2022 20:40:11: #1 tag size = 66 INFO @ Sat, 15 Jan 2022 20:40:11: #1 total tags in treatment: 4503283 INFO @ Sat, 15 Jan 2022 20:40:11: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 20:40:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 20:40:11: #1 tags after filtering in treatment: 4503283 INFO @ Sat, 15 Jan 2022 20:40:11: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 20:40:11: #1 finished! INFO @ Sat, 15 Jan 2022 20:40:11: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 20:40:11: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 20:40:11: #2 number of paired peaks: 29 WARNING @ Sat, 15 Jan 2022 20:40:11: Too few paired peaks (29) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 20:40:11: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431291/SRX9431291.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling