Job ID = 14520904 SRX = SRX9431241 Genome = sacCer3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 3716363 spots for SRR12979535/SRR12979535.sra Written 3716363 spots for SRR12979535/SRR12979535.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:01 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:00:39 3716363 reads; of these: 3716363 (100.00%) were unpaired; of these: 397142 (10.69%) aligned 0 times 2845000 (76.55%) aligned exactly 1 time 474221 (12.76%) aligned >1 times 89.31% overall alignment rate Time searching: 00:00:40 Overall time: 00:00:40 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 523610 / 3319221 = 0.1578 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 20:07:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 20:07:40: #1 read tag files... INFO @ Sat, 15 Jan 2022 20:07:40: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 20:07:46: 1000000 INFO @ Sat, 15 Jan 2022 20:07:52: 2000000 INFO @ Sat, 15 Jan 2022 20:07:56: #1 tag size is determined as 68 bps INFO @ Sat, 15 Jan 2022 20:07:56: #1 tag size = 68 INFO @ Sat, 15 Jan 2022 20:07:56: #1 total tags in treatment: 2795611 INFO @ Sat, 15 Jan 2022 20:07:56: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 20:07:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 20:07:56: #1 tags after filtering in treatment: 2795611 INFO @ Sat, 15 Jan 2022 20:07:56: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 20:07:56: #1 finished! INFO @ Sat, 15 Jan 2022 20:07:56: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 20:07:56: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 20:07:57: #2 number of paired peaks: 40 WARNING @ Sat, 15 Jan 2022 20:07:57: Too few paired peaks (40) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 20:07:57: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 20:08:10: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 20:08:10: #1 read tag files... INFO @ Sat, 15 Jan 2022 20:08:10: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 20:08:16: 1000000 INFO @ Sat, 15 Jan 2022 20:08:22: 2000000 INFO @ Sat, 15 Jan 2022 20:08:26: #1 tag size is determined as 68 bps INFO @ Sat, 15 Jan 2022 20:08:26: #1 tag size = 68 INFO @ Sat, 15 Jan 2022 20:08:26: #1 total tags in treatment: 2795611 INFO @ Sat, 15 Jan 2022 20:08:26: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 20:08:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 20:08:26: #1 tags after filtering in treatment: 2795611 INFO @ Sat, 15 Jan 2022 20:08:26: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 20:08:26: #1 finished! INFO @ Sat, 15 Jan 2022 20:08:26: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 20:08:26: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 20:08:26: #2 number of paired peaks: 40 WARNING @ Sat, 15 Jan 2022 20:08:26: Too few paired peaks (40) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 20:08:26: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 20:08:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 20:08:40: #1 read tag files... INFO @ Sat, 15 Jan 2022 20:08:40: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 20:08:46: 1000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 15 Jan 2022 20:08:52: 2000000 INFO @ Sat, 15 Jan 2022 20:08:56: #1 tag size is determined as 68 bps INFO @ Sat, 15 Jan 2022 20:08:56: #1 tag size = 68 INFO @ Sat, 15 Jan 2022 20:08:56: #1 total tags in treatment: 2795611 INFO @ Sat, 15 Jan 2022 20:08:56: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 20:08:56: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 20:08:56: #1 tags after filtering in treatment: 2795611 INFO @ Sat, 15 Jan 2022 20:08:56: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 15 Jan 2022 20:08:56: #1 finished! INFO @ Sat, 15 Jan 2022 20:08:56: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 20:08:56: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 20:08:57: #2 number of paired peaks: 40 WARNING @ Sat, 15 Jan 2022 20:08:57: Too few paired peaks (40) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 20:08:57: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX9431241/SRX9431241.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BigWig に変換しました。