Job ID = 10224066 SRX = SRX8952623 Genome = sacCer3 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... Read 6258215 spots for SRR12458263/SRR12458263.sra Written 6258215 spots for SRR12458263/SRR12458263.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:00:51 6258215 reads; of these: 6258215 (100.00%) were unpaired; of these: 1495948 (23.90%) aligned 0 times 3973504 (63.49%) aligned exactly 1 time 788763 (12.60%) aligned >1 times 76.10% overall alignment rate Time searching: 00:00:51 Overall time: 00:00:51 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 3446076 / 4762267 = 0.7236 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 09:18:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 09:18:59: #1 read tag files... INFO @ Fri, 16 Oct 2020 09:18:59: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 09:19:05: 1000000 INFO @ Fri, 16 Oct 2020 09:19:07: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 09:19:07: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 09:19:07: #1 total tags in treatment: 1316191 INFO @ Fri, 16 Oct 2020 09:19:07: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 09:19:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 09:19:07: #1 tags after filtering in treatment: 1316191 INFO @ Fri, 16 Oct 2020 09:19:07: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 09:19:07: #1 finished! INFO @ Fri, 16 Oct 2020 09:19:07: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 09:19:07: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 09:19:07: #2 number of paired peaks: 67 WARNING @ Fri, 16 Oct 2020 09:19:07: Too few paired peaks (67) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 16 Oct 2020 09:19:07: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 09:19:29: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 09:19:29: #1 read tag files... INFO @ Fri, 16 Oct 2020 09:19:29: #1 read treatment tags... INFO @ Fri, 16 Oct 2020 09:19:36: 1000000 INFO @ Fri, 16 Oct 2020 09:19:38: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 09:19:38: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 09:19:38: #1 total tags in treatment: 1316191 INFO @ Fri, 16 Oct 2020 09:19:38: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 09:19:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 09:19:38: #1 tags after filtering in treatment: 1316191 INFO @ Fri, 16 Oct 2020 09:19:38: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 09:19:38: #1 finished! INFO @ Fri, 16 Oct 2020 09:19:38: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 09:19:38: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 09:19:38: #2 number of paired peaks: 67 WARNING @ Fri, 16 Oct 2020 09:19:38: Too few paired peaks (67) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 16 Oct 2020 09:19:38: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Fri, 16 Oct 2020 09:19:59: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 16 Oct 2020 09:19:59: #1 read tag files... INFO @ Fri, 16 Oct 2020 09:19:59: #1 read treatment tags... BedGraph に変換しました。 BigWig に変換中... INFO @ Fri, 16 Oct 2020 09:20:05: 1000000 BigWig に変換しました。 INFO @ Fri, 16 Oct 2020 09:20:07: #1 tag size is determined as 50 bps INFO @ Fri, 16 Oct 2020 09:20:07: #1 tag size = 50 INFO @ Fri, 16 Oct 2020 09:20:07: #1 total tags in treatment: 1316191 INFO @ Fri, 16 Oct 2020 09:20:07: #1 user defined the maximum tags... INFO @ Fri, 16 Oct 2020 09:20:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 16 Oct 2020 09:20:07: #1 tags after filtering in treatment: 1316191 INFO @ Fri, 16 Oct 2020 09:20:07: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 16 Oct 2020 09:20:07: #1 finished! INFO @ Fri, 16 Oct 2020 09:20:07: #2 Build Peak Model... INFO @ Fri, 16 Oct 2020 09:20:07: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 16 Oct 2020 09:20:07: #2 number of paired peaks: 67 WARNING @ Fri, 16 Oct 2020 09:20:07: Too few paired peaks (67) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 16 Oct 2020 09:20:07: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX8952623/SRX8952623.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling