Job ID = 14521945 SRX = SRX7637527 Genome = sacCer3 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 11156220 spots for SRR10972039/SRR10972039.sra Written 11156220 spots for SRR10972039/SRR10972039.sra fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:07:18 11156220 reads; of these: 11156220 (100.00%) were paired; of these: 6862121 (61.51%) aligned concordantly 0 times 2340182 (20.98%) aligned concordantly exactly 1 time 1953917 (17.51%) aligned concordantly >1 times ---- 6862121 pairs aligned concordantly 0 times; of these: 61806 (0.90%) aligned discordantly 1 time ---- 6800315 pairs aligned 0 times concordantly or discordantly; of these: 13600630 mates make up the pairs; of these: 13460398 (98.97%) aligned 0 times 89899 (0.66%) aligned exactly 1 time 50333 (0.37%) aligned >1 times 39.67% overall alignment rate Time searching: 00:07:18 Overall time: 00:07:18 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrIX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrVI... [bam_rmdup_core] processing reference chrVII... [bam_rmdup_core] processing reference chrVIII... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXI... [bam_rmdup_core] processing reference chrXII... [bam_rmdup_core] processing reference chrXIII... [bam_rmdup_core] processing reference chrXIV... [bam_rmdup_core] processing reference chrXV... [bam_rmdup_core] processing reference chrXVI... [bam_rmdup_core] 2338475 / 4341137 = 0.5387 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 22:03:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 22:03:28: #1 read tag files... INFO @ Sat, 15 Jan 2022 22:03:28: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 22:03:35: 1000000 INFO @ Sat, 15 Jan 2022 22:03:43: 2000000 INFO @ Sat, 15 Jan 2022 22:03:50: 3000000 WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 22:03:57: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 22:03:57: #1 read tag files... INFO @ Sat, 15 Jan 2022 22:03:57: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 22:03:58: 4000000 INFO @ Sat, 15 Jan 2022 22:03:59: #1 tag size is determined as 42 bps INFO @ Sat, 15 Jan 2022 22:03:59: #1 tag size = 42 INFO @ Sat, 15 Jan 2022 22:03:59: #1 total tags in treatment: 1958945 INFO @ Sat, 15 Jan 2022 22:03:59: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 22:03:59: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 22:03:59: #1 tags after filtering in treatment: 1330521 INFO @ Sat, 15 Jan 2022 22:03:59: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 15 Jan 2022 22:03:59: #1 finished! INFO @ Sat, 15 Jan 2022 22:03:59: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 22:03:59: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 22:04:00: #2 number of paired peaks: 68 WARNING @ Sat, 15 Jan 2022 22:04:00: Too few paired peaks (68) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 22:04:00: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 22:04:04: 1000000 INFO @ Sat, 15 Jan 2022 22:04:11: 2000000 INFO @ Sat, 15 Jan 2022 22:04:17: 3000000 INFO @ Sat, 15 Jan 2022 22:04:24: 4000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.8.3/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Sat, 15 Jan 2022 22:04:25: #1 tag size is determined as 42 bps INFO @ Sat, 15 Jan 2022 22:04:25: #1 tag size = 42 INFO @ Sat, 15 Jan 2022 22:04:25: #1 total tags in treatment: 1958945 INFO @ Sat, 15 Jan 2022 22:04:25: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 22:04:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 22:04:25: #1 tags after filtering in treatment: 1330521 INFO @ Sat, 15 Jan 2022 22:04:25: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 15 Jan 2022 22:04:25: #1 finished! INFO @ Sat, 15 Jan 2022 22:04:25: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 22:04:25: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 22:04:25: #2 number of paired peaks: 68 WARNING @ Sat, 15 Jan 2022 22:04:25: Too few paired peaks (68) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 22:04:25: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 15 Jan 2022 22:04:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 15 Jan 2022 22:04:27: #1 read tag files... INFO @ Sat, 15 Jan 2022 22:04:27: #1 read treatment tags... INFO @ Sat, 15 Jan 2022 22:04:36: 1000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 15 Jan 2022 22:04:46: 2000000 BigWig に変換しました。 INFO @ Sat, 15 Jan 2022 22:04:55: 3000000 INFO @ Sat, 15 Jan 2022 22:05:04: 4000000 INFO @ Sat, 15 Jan 2022 22:05:05: #1 tag size is determined as 42 bps INFO @ Sat, 15 Jan 2022 22:05:05: #1 tag size = 42 INFO @ Sat, 15 Jan 2022 22:05:05: #1 total tags in treatment: 1958945 INFO @ Sat, 15 Jan 2022 22:05:05: #1 user defined the maximum tags... INFO @ Sat, 15 Jan 2022 22:05:05: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 15 Jan 2022 22:05:05: #1 tags after filtering in treatment: 1330521 INFO @ Sat, 15 Jan 2022 22:05:05: #1 Redundant rate of treatment: 0.32 INFO @ Sat, 15 Jan 2022 22:05:05: #1 finished! INFO @ Sat, 15 Jan 2022 22:05:05: #2 Build Peak Model... INFO @ Sat, 15 Jan 2022 22:05:05: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 15 Jan 2022 22:05:05: #2 number of paired peaks: 68 WARNING @ Sat, 15 Jan 2022 22:05:05: Too few paired peaks (68) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 15 Jan 2022 22:05:05: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX7637527/SRX7637527.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling