Job ID = 5791226 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 4,689,976 reads read : 4,689,976 reads written : 4,689,976 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘/home/okishinya/ncbi/public/sra/SRR1593250.sra.cache’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:00:34 4689976 reads; of these: 4689976 (100.00%) were unpaired; of these: 203266 (4.33%) aligned 0 times 3627712 (77.35%) aligned exactly 1 time 858998 (18.32%) aligned >1 times 95.67% overall alignment rate Time searching: 00:00:34 Overall time: 00:00:34 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 1850306 / 4486710 = 0.4124 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Apr 2020 09:07:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Apr 2020 09:07:55: #1 read tag files... INFO @ Wed, 22 Apr 2020 09:07:55: #1 read treatment tags... INFO @ Wed, 22 Apr 2020 09:08:01: 1000000 INFO @ Wed, 22 Apr 2020 09:08:07: 2000000 INFO @ Wed, 22 Apr 2020 09:08:11: #1 tag size is determined as 60 bps INFO @ Wed, 22 Apr 2020 09:08:11: #1 tag size = 60 INFO @ Wed, 22 Apr 2020 09:08:11: #1 total tags in treatment: 2636404 INFO @ Wed, 22 Apr 2020 09:08:11: #1 user defined the maximum tags... INFO @ Wed, 22 Apr 2020 09:08:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Apr 2020 09:08:11: #1 tags after filtering in treatment: 2636404 INFO @ Wed, 22 Apr 2020 09:08:11: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Apr 2020 09:08:11: #1 finished! INFO @ Wed, 22 Apr 2020 09:08:11: #2 Build Peak Model... INFO @ Wed, 22 Apr 2020 09:08:11: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Apr 2020 09:08:11: #2 number of paired peaks: 28 WARNING @ Wed, 22 Apr 2020 09:08:11: Too few paired peaks (28) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 22 Apr 2020 09:08:11: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Apr 2020 09:08:25: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Apr 2020 09:08:25: #1 read tag files... INFO @ Wed, 22 Apr 2020 09:08:25: #1 read treatment tags... INFO @ Wed, 22 Apr 2020 09:08:30: 1000000 INFO @ Wed, 22 Apr 2020 09:08:36: 2000000 INFO @ Wed, 22 Apr 2020 09:08:39: #1 tag size is determined as 60 bps INFO @ Wed, 22 Apr 2020 09:08:39: #1 tag size = 60 INFO @ Wed, 22 Apr 2020 09:08:39: #1 total tags in treatment: 2636404 INFO @ Wed, 22 Apr 2020 09:08:39: #1 user defined the maximum tags... INFO @ Wed, 22 Apr 2020 09:08:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Apr 2020 09:08:39: #1 tags after filtering in treatment: 2636404 INFO @ Wed, 22 Apr 2020 09:08:39: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Apr 2020 09:08:39: #1 finished! INFO @ Wed, 22 Apr 2020 09:08:39: #2 Build Peak Model... INFO @ Wed, 22 Apr 2020 09:08:39: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Apr 2020 09:08:39: #2 number of paired peaks: 28 WARNING @ Wed, 22 Apr 2020 09:08:39: Too few paired peaks (28) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 22 Apr 2020 09:08:39: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Apr 2020 09:08:55: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Apr 2020 09:08:55: #1 read tag files... INFO @ Wed, 22 Apr 2020 09:08:55: #1 read treatment tags... INFO @ Wed, 22 Apr 2020 09:09:00: 1000000 INFO @ Wed, 22 Apr 2020 09:09:06: 2000000 INFO @ Wed, 22 Apr 2020 09:09:09: #1 tag size is determined as 60 bps INFO @ Wed, 22 Apr 2020 09:09:09: #1 tag size = 60 INFO @ Wed, 22 Apr 2020 09:09:09: #1 total tags in treatment: 2636404 INFO @ Wed, 22 Apr 2020 09:09:09: #1 user defined the maximum tags... INFO @ Wed, 22 Apr 2020 09:09:09: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Apr 2020 09:09:09: #1 tags after filtering in treatment: 2636404 INFO @ Wed, 22 Apr 2020 09:09:09: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Apr 2020 09:09:09: #1 finished! INFO @ Wed, 22 Apr 2020 09:09:09: #2 Build Peak Model... INFO @ Wed, 22 Apr 2020 09:09:09: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Apr 2020 09:09:10: #2 number of paired peaks: 28 WARNING @ Wed, 22 Apr 2020 09:09:10: Too few paired peaks (28) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 22 Apr 2020 09:09:10: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX717555/SRX717555.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。