Job ID = 5791219 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 14,471,237 reads read : 14,471,237 reads written : 14,471,237 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘/home/okishinya/ncbi/public/sra/SRR1569565.sra.cache’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:48 14471237 reads; of these: 14471237 (100.00%) were unpaired; of these: 641777 (4.43%) aligned 0 times 11639420 (80.43%) aligned exactly 1 time 2190040 (15.13%) aligned >1 times 95.57% overall alignment rate Time searching: 00:01:48 Overall time: 00:01:48 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 4201345 / 13829460 = 0.3038 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Apr 2020 09:07:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Apr 2020 09:07:22: #1 read tag files... INFO @ Wed, 22 Apr 2020 09:07:22: #1 read treatment tags... INFO @ Wed, 22 Apr 2020 09:07:27: 1000000 INFO @ Wed, 22 Apr 2020 09:07:33: 2000000 INFO @ Wed, 22 Apr 2020 09:07:38: 3000000 INFO @ Wed, 22 Apr 2020 09:07:43: 4000000 INFO @ Wed, 22 Apr 2020 09:07:49: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Apr 2020 09:07:52: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Apr 2020 09:07:52: #1 read tag files... INFO @ Wed, 22 Apr 2020 09:07:52: #1 read treatment tags... INFO @ Wed, 22 Apr 2020 09:07:55: 6000000 INFO @ Wed, 22 Apr 2020 09:07:58: 1000000 INFO @ Wed, 22 Apr 2020 09:08:01: 7000000 INFO @ Wed, 22 Apr 2020 09:08:04: 2000000 INFO @ Wed, 22 Apr 2020 09:08:07: 8000000 INFO @ Wed, 22 Apr 2020 09:08:10: 3000000 INFO @ Wed, 22 Apr 2020 09:08:13: 9000000 INFO @ Wed, 22 Apr 2020 09:08:16: #1 tag size is determined as 51 bps INFO @ Wed, 22 Apr 2020 09:08:16: #1 tag size = 51 INFO @ Wed, 22 Apr 2020 09:08:16: #1 total tags in treatment: 9628115 INFO @ Wed, 22 Apr 2020 09:08:16: #1 user defined the maximum tags... INFO @ Wed, 22 Apr 2020 09:08:16: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Apr 2020 09:08:16: 4000000 INFO @ Wed, 22 Apr 2020 09:08:17: #1 tags after filtering in treatment: 9628115 INFO @ Wed, 22 Apr 2020 09:08:17: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Apr 2020 09:08:17: #1 finished! INFO @ Wed, 22 Apr 2020 09:08:17: #2 Build Peak Model... INFO @ Wed, 22 Apr 2020 09:08:17: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Apr 2020 09:08:17: #2 number of paired peaks: 0 WARNING @ Wed, 22 Apr 2020 09:08:17: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 22 Apr 2020 09:08:17: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Apr 2020 09:08:22: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Apr 2020 09:08:22: #1 read tag files... INFO @ Wed, 22 Apr 2020 09:08:22: #1 read treatment tags... INFO @ Wed, 22 Apr 2020 09:08:22: 5000000 INFO @ Wed, 22 Apr 2020 09:08:28: 6000000 INFO @ Wed, 22 Apr 2020 09:08:28: 1000000 INFO @ Wed, 22 Apr 2020 09:08:34: 7000000 INFO @ Wed, 22 Apr 2020 09:08:34: 2000000 INFO @ Wed, 22 Apr 2020 09:08:40: 8000000 INFO @ Wed, 22 Apr 2020 09:08:40: 3000000 INFO @ Wed, 22 Apr 2020 09:08:46: 9000000 INFO @ Wed, 22 Apr 2020 09:08:47: 4000000 INFO @ Wed, 22 Apr 2020 09:08:49: #1 tag size is determined as 51 bps INFO @ Wed, 22 Apr 2020 09:08:49: #1 tag size = 51 INFO @ Wed, 22 Apr 2020 09:08:49: #1 total tags in treatment: 9628115 INFO @ Wed, 22 Apr 2020 09:08:49: #1 user defined the maximum tags... INFO @ Wed, 22 Apr 2020 09:08:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Apr 2020 09:08:49: #1 tags after filtering in treatment: 9628115 INFO @ Wed, 22 Apr 2020 09:08:49: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Apr 2020 09:08:49: #1 finished! INFO @ Wed, 22 Apr 2020 09:08:49: #2 Build Peak Model... INFO @ Wed, 22 Apr 2020 09:08:49: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Apr 2020 09:08:50: #2 number of paired peaks: 0 WARNING @ Wed, 22 Apr 2020 09:08:50: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 22 Apr 2020 09:08:50: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Wed, 22 Apr 2020 09:08:52: 5000000 INFO @ Wed, 22 Apr 2020 09:08:58: 6000000 INFO @ Wed, 22 Apr 2020 09:09:03: 7000000 INFO @ Wed, 22 Apr 2020 09:09:09: 8000000 INFO @ Wed, 22 Apr 2020 09:09:15: 9000000 INFO @ Wed, 22 Apr 2020 09:09:18: #1 tag size is determined as 51 bps INFO @ Wed, 22 Apr 2020 09:09:18: #1 tag size = 51 INFO @ Wed, 22 Apr 2020 09:09:18: #1 total tags in treatment: 9628115 INFO @ Wed, 22 Apr 2020 09:09:18: #1 user defined the maximum tags... INFO @ Wed, 22 Apr 2020 09:09:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Apr 2020 09:09:18: #1 tags after filtering in treatment: 9628115 INFO @ Wed, 22 Apr 2020 09:09:18: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Apr 2020 09:09:18: #1 finished! INFO @ Wed, 22 Apr 2020 09:09:18: #2 Build Peak Model... INFO @ Wed, 22 Apr 2020 09:09:18: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Apr 2020 09:09:19: #2 number of paired peaks: 0 WARNING @ Wed, 22 Apr 2020 09:09:19: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 22 Apr 2020 09:09:19: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 0 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX696000/SRX696000.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。