Job ID = 2641071 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 19,986,135 reads read : 39,972,270 reads written : 19,986,135 reads 0-length : 19,986,135 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:03:30 19986135 reads; of these: 19986135 (100.00%) were unpaired; of these: 367079 (1.84%) aligned 0 times 17662743 (88.37%) aligned exactly 1 time 1956313 (9.79%) aligned >1 times 98.16% overall alignment rate Time searching: 00:03:30 Overall time: 00:03:30 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 10571696 / 19619056 = 0.5388 in library ' ' BAM に変換しました。 Bed ファイルを作成中... INFO @ Sat, 24 Aug 2019 21:19:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 24 Aug 2019 21:19:45: #1 read tag files... INFO @ Sat, 24 Aug 2019 21:19:45: #1 read treatment tags... INFO @ Sat, 24 Aug 2019 21:19:52: 1000000 INFO @ Sat, 24 Aug 2019 21:19:59: 2000000 INFO @ Sat, 24 Aug 2019 21:20:06: 3000000 INFO @ Sat, 24 Aug 2019 21:20:13: 4000000 INFO @ Sat, 24 Aug 2019 21:20:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 24 Aug 2019 21:20:15: #1 read tag files... INFO @ Sat, 24 Aug 2019 21:20:15: #1 read treatment tags... INFO @ Sat, 24 Aug 2019 21:20:19: 5000000 INFO @ Sat, 24 Aug 2019 21:20:23: 1000000 INFO @ Sat, 24 Aug 2019 21:20:26: 6000000 INFO @ Sat, 24 Aug 2019 21:20:31: 2000000 INFO @ Sat, 24 Aug 2019 21:20:33: 7000000 INFO @ Sat, 24 Aug 2019 21:20:38: 3000000 INFO @ Sat, 24 Aug 2019 21:20:40: 8000000 BedGraph に変換中... INFO @ Sat, 24 Aug 2019 21:20:45: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 24 Aug 2019 21:20:45: #1 read tag files... INFO @ Sat, 24 Aug 2019 21:20:45: #1 read treatment tags... INFO @ Sat, 24 Aug 2019 21:20:46: 4000000 INFO @ Sat, 24 Aug 2019 21:20:47: 9000000 INFO @ Sat, 24 Aug 2019 21:20:47: #1 tag size is determined as 50 bps INFO @ Sat, 24 Aug 2019 21:20:47: #1 tag size = 50 INFO @ Sat, 24 Aug 2019 21:20:47: #1 total tags in treatment: 9047360 INFO @ Sat, 24 Aug 2019 21:20:47: #1 user defined the maximum tags... INFO @ Sat, 24 Aug 2019 21:20:47: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 24 Aug 2019 21:20:47: #1 tags after filtering in treatment: 9047360 INFO @ Sat, 24 Aug 2019 21:20:47: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 24 Aug 2019 21:20:47: #1 finished! INFO @ Sat, 24 Aug 2019 21:20:47: #2 Build Peak Model... INFO @ Sat, 24 Aug 2019 21:20:47: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 24 Aug 2019 21:20:48: #2 number of paired peaks: 0 WARNING @ Sat, 24 Aug 2019 21:20:48: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 24 Aug 2019 21:20:48: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 24 Aug 2019 21:20:53: 1000000 INFO @ Sat, 24 Aug 2019 21:20:54: 5000000 INFO @ Sat, 24 Aug 2019 21:21:01: 2000000 INFO @ Sat, 24 Aug 2019 21:21:01: 6000000 INFO @ Sat, 24 Aug 2019 21:21:09: 3000000 INFO @ Sat, 24 Aug 2019 21:21:09: 7000000 INFO @ Sat, 24 Aug 2019 21:21:16: 4000000 INFO @ Sat, 24 Aug 2019 21:21:16: 8000000 INFO @ Sat, 24 Aug 2019 21:21:24: 9000000 INFO @ Sat, 24 Aug 2019 21:21:24: 5000000 INFO @ Sat, 24 Aug 2019 21:21:24: #1 tag size is determined as 50 bps INFO @ Sat, 24 Aug 2019 21:21:24: #1 tag size = 50 INFO @ Sat, 24 Aug 2019 21:21:24: #1 total tags in treatment: 9047360 INFO @ Sat, 24 Aug 2019 21:21:24: #1 user defined the maximum tags... INFO @ Sat, 24 Aug 2019 21:21:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 24 Aug 2019 21:21:24: #1 tags after filtering in treatment: 9047360 INFO @ Sat, 24 Aug 2019 21:21:24: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 24 Aug 2019 21:21:24: #1 finished! INFO @ Sat, 24 Aug 2019 21:21:24: #2 Build Peak Model... INFO @ Sat, 24 Aug 2019 21:21:24: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 24 Aug 2019 21:21:25: #2 number of paired peaks: 0 WARNING @ Sat, 24 Aug 2019 21:21:25: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 24 Aug 2019 21:21:25: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 24 Aug 2019 21:21:32: 6000000 INFO @ Sat, 24 Aug 2019 21:21:39: 7000000 INFO @ Sat, 24 Aug 2019 21:21:47: 8000000 INFO @ Sat, 24 Aug 2019 21:21:54: 9000000 INFO @ Sat, 24 Aug 2019 21:21:54: #1 tag size is determined as 50 bps INFO @ Sat, 24 Aug 2019 21:21:54: #1 tag size = 50 INFO @ Sat, 24 Aug 2019 21:21:54: #1 total tags in treatment: 9047360 INFO @ Sat, 24 Aug 2019 21:21:54: #1 user defined the maximum tags... INFO @ Sat, 24 Aug 2019 21:21:54: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 24 Aug 2019 21:21:54: #1 tags after filtering in treatment: 9047360 INFO @ Sat, 24 Aug 2019 21:21:54: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 24 Aug 2019 21:21:54: #1 finished! INFO @ Sat, 24 Aug 2019 21:21:54: #2 Build Peak Model... INFO @ Sat, 24 Aug 2019 21:21:54: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 24 Aug 2019 21:21:55: #2 number of paired peaks: 0 WARNING @ Sat, 24 Aug 2019 21:21:55: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 24 Aug 2019 21:21:55: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5257265/SRX5257265.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。