Job ID = 2011850 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... 2019-07-05T18:22:55 fasterq-dump.2.9.6 sys: timeout exhausted while reading file within network system module - mbedtls_ssl_read returned -76 ( NET - Reading information from the socket failed ) spots read : 47,626,473 reads read : 95,252,946 reads written : 95,252,891 reads 0-length : 55 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Warning: skipping mate #1 of read 'SRR8313297.330049 330049 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.330049 330049 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.559568 559568 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.559568 559568 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.745226 745226 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.745226 745226 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.1152232 1152232 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.1152232 1152232 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.2091346 2091346 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.2091346 2091346 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.4086124 4086124 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.4086124 4086124 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.4147598 4147598 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.4147598 4147598 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.4192843 4192843 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.4192843 4192843 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.4454713 4454713 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.4454713 4454713 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.4967095 4967095 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.4967095 4967095 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.5362088 5362088 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.5362088 5362088 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.9508713 9508713 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.9508713 9508713 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.9857175 9857175 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.9857175 9857175 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.12410785 12410785 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.12410785 12410785 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.12457419 12457419 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.12457419 12457419 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.12576732 12576732 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.12576732 12576732 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.13763459 13763459 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.13763459 13763459 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.14092975 14092975 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.14092975 14092975 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.15669891 15669891 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.15669891 15669891 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.17872556 17872556 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.17872556 17872556 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.18439239 18439239 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.18439239 18439239 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.18681878 18681878 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.18681878 18681878 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.19262826 19262826 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.19262826 19262826 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.20558629 20558629 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.20558629 20558629 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.20667552 20667552 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.20667552 20667552 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.21181453 21181453 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.21181453 21181453 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.21360984 21360984 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.21360984 21360984 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.21532633 21532633 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.21532633 21532633 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.21688222 21688222 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.21688222 21688222 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.21842501 21842501 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.21842501 21842501 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.22008619 22008619 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.22008619 22008619 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.22685976 22685976 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.22685976 22685976 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.23599852 23599852 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.23599852 23599852 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.25994326 25994326 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.25994326 25994326 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.26514070 26514070 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.26514070 26514070 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.28907541 28907541 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.28907541 28907541 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.30599338 30599338 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.30599338 30599338 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.31052775 31052775 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.31052775 31052775 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.31977041 31977041 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.31977041 31977041 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.32142662 32142662 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.32142662 32142662 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.32808518 32808518 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.32808518 32808518 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.32903011 32903011 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.32903011 32903011 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.33705264 33705264 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.33705264 33705264 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.34910044 34910044 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.34910044 34910044 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.35951515 35951515 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.35951515 35951515 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.36191672 36191672 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.36191672 36191672 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.36524678 36524678 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.36524678 36524678 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.40503547 40503547 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.40503547 40503547 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.41284962 41284962 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.41284962 41284962 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.41361797 41361797 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.41361797 41361797 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.41567920 41567920 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.41567920 41567920 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.42250436 42250436 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.42250436 42250436 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.42886289 42886289 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.42886289 42886289 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.44009543 44009543 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.44009543 44009543 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.44663300 44663300 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.44663300 44663300 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.45748972 45748972 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.45748972 45748972 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.46531524 46531524 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.46531524 46531524 length=1' because it was < 2 characters long Warning: skipping mate #1 of read 'SRR8313297.47549823 47549823 length=1' because length (1) <= # seed mismatches (0) Warning: skipping mate #1 of read 'SRR8313297.47549823 47549823 length=1' because it was < 2 characters long Error, fewer reads in file specified with -1 than in file specified with -2 terminate called after throwing an instance of 'int' (ERR): bowtie2-align died with signal 6 (ABRT) (core dumped) マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 40 files... [bam_rmdup_core] processing reference chrI... [bam_rmdup_core] processing reference chrII... [bam_rmdup_core] processing reference chrIII... [bam_rmdup_core] processing reference chrIV... [bam_rmdup_core] processing reference chrIX... [bam_rmdup_core] processing reference chrM... [bam_rmdup_core] processing reference chrV... [bam_rmdup_core] processing reference chrVI... [bam_rmdup_core] processing reference chrVII... [bam_rmdup_core] processing reference chrVIII... [bam_rmdup_core] processing reference chrX... [bam_rmdup_core] processing reference chrXI... [bam_rmdup_core] processing reference chrXII... [bam_rmdup_core] processing reference chrXIII... [bam_rmdup_core] processing reference chrXIV... [bam_rmdup_core] processing reference chrXV... [bam_rmdup_core] processing reference chrXVI... [bam_rmdup_core] 6711575 / 45525107 = 0.1474 in library ' ' awk: cmd. line:1: (FILENAME=- FNR=1) fatal: division by zero attempted BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 06 Jul 2019 05:00:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 05:00:27: #1 read tag files... INFO @ Sat, 06 Jul 2019 05:00:27: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 05:00:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 05:00:27: #1 read tag files... INFO @ Sat, 06 Jul 2019 05:00:27: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 05:00:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 05:00:28: #1 read tag files... INFO @ Sat, 06 Jul 2019 05:00:29: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 05:00:40: 1000000 INFO @ Sat, 06 Jul 2019 05:00:40: 1000000 INFO @ Sat, 06 Jul 2019 05:00:41: 1000000 INFO @ Sat, 06 Jul 2019 05:00:52: 2000000 INFO @ Sat, 06 Jul 2019 05:00:52: 2000000 INFO @ Sat, 06 Jul 2019 05:00:53: 2000000 INFO @ Sat, 06 Jul 2019 05:01:05: 3000000 INFO @ Sat, 06 Jul 2019 05:01:05: 3000000 INFO @ Sat, 06 Jul 2019 05:01:05: 3000000 INFO @ Sat, 06 Jul 2019 05:01:17: 4000000 INFO @ Sat, 06 Jul 2019 05:01:17: 4000000 INFO @ Sat, 06 Jul 2019 05:01:17: 4000000 INFO @ Sat, 06 Jul 2019 05:01:29: 5000000 INFO @ Sat, 06 Jul 2019 05:01:29: 5000000 INFO @ Sat, 06 Jul 2019 05:01:30: 5000000 INFO @ Sat, 06 Jul 2019 05:01:41: 6000000 INFO @ Sat, 06 Jul 2019 05:01:42: 6000000 INFO @ Sat, 06 Jul 2019 05:01:42: 6000000 INFO @ Sat, 06 Jul 2019 05:01:53: 7000000 INFO @ Sat, 06 Jul 2019 05:01:54: 7000000 INFO @ Sat, 06 Jul 2019 05:01:54: 7000000 INFO @ Sat, 06 Jul 2019 05:02:05: 8000000 INFO @ Sat, 06 Jul 2019 05:02:06: 8000000 INFO @ Sat, 06 Jul 2019 05:02:06: 8000000 INFO @ Sat, 06 Jul 2019 05:02:16: 9000000 INFO @ Sat, 06 Jul 2019 05:02:17: 9000000 INFO @ Sat, 06 Jul 2019 05:02:18: 9000000 INFO @ Sat, 06 Jul 2019 05:02:28: 10000000 INFO @ Sat, 06 Jul 2019 05:02:29: 10000000 INFO @ Sat, 06 Jul 2019 05:02:30: 10000000 INFO @ Sat, 06 Jul 2019 05:02:39: 11000000 INFO @ Sat, 06 Jul 2019 05:02:41: 11000000 INFO @ Sat, 06 Jul 2019 05:02:42: 11000000 INFO @ Sat, 06 Jul 2019 05:02:51: 12000000 INFO @ Sat, 06 Jul 2019 05:02:53: 12000000 INFO @ Sat, 06 Jul 2019 05:02:53: 12000000 INFO @ Sat, 06 Jul 2019 05:03:02: 13000000 INFO @ Sat, 06 Jul 2019 05:03:05: 13000000 INFO @ Sat, 06 Jul 2019 05:03:05: 13000000 INFO @ Sat, 06 Jul 2019 05:03:14: 14000000 INFO @ Sat, 06 Jul 2019 05:03:17: 14000000 INFO @ Sat, 06 Jul 2019 05:03:17: 14000000 INFO @ Sat, 06 Jul 2019 05:03:25: 15000000 INFO @ Sat, 06 Jul 2019 05:03:29: 15000000 INFO @ Sat, 06 Jul 2019 05:03:29: 15000000 INFO @ Sat, 06 Jul 2019 05:03:37: 16000000 INFO @ Sat, 06 Jul 2019 05:03:41: 16000000 INFO @ Sat, 06 Jul 2019 05:03:41: 16000000 INFO @ Sat, 06 Jul 2019 05:03:48: 17000000 INFO @ Sat, 06 Jul 2019 05:03:52: 17000000 INFO @ Sat, 06 Jul 2019 05:03:52: 17000000 INFO @ Sat, 06 Jul 2019 05:03:59: 18000000 INFO @ Sat, 06 Jul 2019 05:04:04: 18000000 INFO @ Sat, 06 Jul 2019 05:04:04: 18000000 INFO @ Sat, 06 Jul 2019 05:04:10: 19000000 INFO @ Sat, 06 Jul 2019 05:04:15: 19000000 INFO @ Sat, 06 Jul 2019 05:04:16: 19000000 INFO @ Sat, 06 Jul 2019 05:04:21: 20000000 INFO @ Sat, 06 Jul 2019 05:04:27: 20000000 INFO @ Sat, 06 Jul 2019 05:04:27: 20000000 INFO @ Sat, 06 Jul 2019 05:04:33: 21000000 INFO @ Sat, 06 Jul 2019 05:04:38: 21000000 INFO @ Sat, 06 Jul 2019 05:04:39: 21000000 INFO @ Sat, 06 Jul 2019 05:04:44: 22000000 INFO @ Sat, 06 Jul 2019 05:04:50: 22000000 INFO @ Sat, 06 Jul 2019 05:04:50: 22000000 INFO @ Sat, 06 Jul 2019 05:04:55: 23000000 INFO @ Sat, 06 Jul 2019 05:05:01: 23000000 INFO @ Sat, 06 Jul 2019 05:05:02: 23000000 INFO @ Sat, 06 Jul 2019 05:05:06: 24000000 INFO @ Sat, 06 Jul 2019 05:05:13: 24000000 INFO @ Sat, 06 Jul 2019 05:05:13: 24000000 INFO @ Sat, 06 Jul 2019 05:05:17: 25000000 INFO @ Sat, 06 Jul 2019 05:05:25: 25000000 INFO @ Sat, 06 Jul 2019 05:05:25: 25000000 INFO @ Sat, 06 Jul 2019 05:05:28: 26000000 INFO @ Sat, 06 Jul 2019 05:05:36: 26000000 INFO @ Sat, 06 Jul 2019 05:05:36: 26000000 INFO @ Sat, 06 Jul 2019 05:05:40: 27000000 INFO @ Sat, 06 Jul 2019 05:05:48: 27000000 INFO @ Sat, 06 Jul 2019 05:05:48: 27000000 INFO @ Sat, 06 Jul 2019 05:05:51: 28000000 INFO @ Sat, 06 Jul 2019 05:05:59: 28000000 INFO @ Sat, 06 Jul 2019 05:06:00: 28000000 INFO @ Sat, 06 Jul 2019 05:06:02: 29000000 INFO @ Sat, 06 Jul 2019 05:06:11: 29000000 INFO @ Sat, 06 Jul 2019 05:06:11: 29000000 INFO @ Sat, 06 Jul 2019 05:06:13: 30000000 INFO @ Sat, 06 Jul 2019 05:06:22: 30000000 INFO @ Sat, 06 Jul 2019 05:06:23: 30000000 INFO @ Sat, 06 Jul 2019 05:06:24: 31000000 INFO @ Sat, 06 Jul 2019 05:06:34: 31000000 INFO @ Sat, 06 Jul 2019 05:06:34: 31000000 INFO @ Sat, 06 Jul 2019 05:06:36: 32000000 INFO @ Sat, 06 Jul 2019 05:06:45: 32000000 INFO @ Sat, 06 Jul 2019 05:06:46: 32000000 INFO @ Sat, 06 Jul 2019 05:06:47: 33000000 INFO @ Sat, 06 Jul 2019 05:06:57: 33000000 INFO @ Sat, 06 Jul 2019 05:06:57: 33000000 INFO @ Sat, 06 Jul 2019 05:06:58: 34000000 INFO @ Sat, 06 Jul 2019 05:07:09: 34000000 BedGraph に変換しました。 BigWig に変換中... INFO @ Sat, 06 Jul 2019 05:07:09: 34000000 INFO @ Sat, 06 Jul 2019 05:07:09: 35000000 INFO @ Sat, 06 Jul 2019 05:07:20: 35000000 INFO @ Sat, 06 Jul 2019 05:07:20: 36000000 INFO @ Sat, 06 Jul 2019 05:07:20: 35000000 INFO @ Sat, 06 Jul 2019 05:07:31: 37000000 INFO @ Sat, 06 Jul 2019 05:07:32: 36000000 INFO @ Sat, 06 Jul 2019 05:07:32: 36000000 BigWig に変換しました。 INFO @ Sat, 06 Jul 2019 05:07:42: 38000000 INFO @ Sat, 06 Jul 2019 05:07:43: 37000000 INFO @ Sat, 06 Jul 2019 05:07:43: 37000000 INFO @ Sat, 06 Jul 2019 05:07:53: 39000000 INFO @ Sat, 06 Jul 2019 05:07:55: 38000000 INFO @ Sat, 06 Jul 2019 05:07:55: 38000000 INFO @ Sat, 06 Jul 2019 05:08:04: 40000000 INFO @ Sat, 06 Jul 2019 05:08:06: 39000000 INFO @ Sat, 06 Jul 2019 05:08:06: 39000000 INFO @ Sat, 06 Jul 2019 05:08:15: 41000000 INFO @ Sat, 06 Jul 2019 05:08:17: 40000000 INFO @ Sat, 06 Jul 2019 05:08:17: 40000000 INFO @ Sat, 06 Jul 2019 05:08:26: 42000000 INFO @ Sat, 06 Jul 2019 05:08:29: 41000000 INFO @ Sat, 06 Jul 2019 05:08:29: 41000000 INFO @ Sat, 06 Jul 2019 05:08:36: 43000000 INFO @ Sat, 06 Jul 2019 05:08:40: 42000000 INFO @ Sat, 06 Jul 2019 05:08:40: 42000000 INFO @ Sat, 06 Jul 2019 05:08:46: 44000000 INFO @ Sat, 06 Jul 2019 05:08:51: 43000000 INFO @ Sat, 06 Jul 2019 05:08:52: 43000000 INFO @ Sat, 06 Jul 2019 05:08:57: 45000000 INFO @ Sat, 06 Jul 2019 05:09:03: 44000000 INFO @ Sat, 06 Jul 2019 05:09:03: 44000000 INFO @ Sat, 06 Jul 2019 05:09:07: 46000000 INFO @ Sat, 06 Jul 2019 05:09:14: 45000000 INFO @ Sat, 06 Jul 2019 05:09:14: 45000000 INFO @ Sat, 06 Jul 2019 05:09:18: 47000000 INFO @ Sat, 06 Jul 2019 05:09:26: 46000000 INFO @ Sat, 06 Jul 2019 05:09:26: 46000000 INFO @ Sat, 06 Jul 2019 05:09:28: 48000000 INFO @ Sat, 06 Jul 2019 05:09:37: 47000000 INFO @ Sat, 06 Jul 2019 05:09:37: 47000000 INFO @ Sat, 06 Jul 2019 05:09:38: 49000000 INFO @ Sat, 06 Jul 2019 05:09:48: 48000000 INFO @ Sat, 06 Jul 2019 05:09:48: 50000000 INFO @ Sat, 06 Jul 2019 05:09:49: 48000000 INFO @ Sat, 06 Jul 2019 05:09:58: 51000000 INFO @ Sat, 06 Jul 2019 05:09:59: 49000000 INFO @ Sat, 06 Jul 2019 05:10:00: 49000000 INFO @ Sat, 06 Jul 2019 05:10:08: 52000000 INFO @ Sat, 06 Jul 2019 05:10:11: 50000000 INFO @ Sat, 06 Jul 2019 05:10:11: 50000000 INFO @ Sat, 06 Jul 2019 05:10:19: 53000000 INFO @ Sat, 06 Jul 2019 05:10:22: 51000000 INFO @ Sat, 06 Jul 2019 05:10:22: 51000000 INFO @ Sat, 06 Jul 2019 05:10:29: 54000000 INFO @ Sat, 06 Jul 2019 05:10:33: 52000000 INFO @ Sat, 06 Jul 2019 05:10:33: 52000000 INFO @ Sat, 06 Jul 2019 05:10:39: 55000000 INFO @ Sat, 06 Jul 2019 05:10:44: 53000000 INFO @ Sat, 06 Jul 2019 05:10:44: 53000000 INFO @ Sat, 06 Jul 2019 05:10:49: 56000000 INFO @ Sat, 06 Jul 2019 05:10:55: 54000000 INFO @ Sat, 06 Jul 2019 05:10:55: 54000000 INFO @ Sat, 06 Jul 2019 05:10:59: 57000000 INFO @ Sat, 06 Jul 2019 05:11:06: 55000000 INFO @ Sat, 06 Jul 2019 05:11:06: 55000000 INFO @ Sat, 06 Jul 2019 05:11:09: 58000000 INFO @ Sat, 06 Jul 2019 05:11:17: 56000000 INFO @ Sat, 06 Jul 2019 05:11:17: 56000000 INFO @ Sat, 06 Jul 2019 05:11:19: 59000000 INFO @ Sat, 06 Jul 2019 05:11:28: 57000000 INFO @ Sat, 06 Jul 2019 05:11:29: 57000000 INFO @ Sat, 06 Jul 2019 05:11:29: 60000000 INFO @ Sat, 06 Jul 2019 05:11:39: 58000000 INFO @ Sat, 06 Jul 2019 05:11:39: 61000000 INFO @ Sat, 06 Jul 2019 05:11:40: 58000000 INFO @ Sat, 06 Jul 2019 05:11:49: 62000000 INFO @ Sat, 06 Jul 2019 05:11:50: 59000000 INFO @ Sat, 06 Jul 2019 05:11:51: 59000000 INFO @ Sat, 06 Jul 2019 05:11:59: 63000000 INFO @ Sat, 06 Jul 2019 05:12:01: 60000000 INFO @ Sat, 06 Jul 2019 05:12:02: 60000000 INFO @ Sat, 06 Jul 2019 05:12:10: 64000000 INFO @ Sat, 06 Jul 2019 05:12:12: 61000000 INFO @ Sat, 06 Jul 2019 05:12:13: 61000000 INFO @ Sat, 06 Jul 2019 05:12:20: 65000000 INFO @ Sat, 06 Jul 2019 05:12:24: 62000000 INFO @ Sat, 06 Jul 2019 05:12:24: 62000000 INFO @ Sat, 06 Jul 2019 05:12:30: 66000000 INFO @ Sat, 06 Jul 2019 05:12:35: 63000000 INFO @ Sat, 06 Jul 2019 05:12:35: 63000000 INFO @ Sat, 06 Jul 2019 05:12:40: 67000000 INFO @ Sat, 06 Jul 2019 05:12:46: 64000000 INFO @ Sat, 06 Jul 2019 05:12:46: 64000000 INFO @ Sat, 06 Jul 2019 05:12:50: 68000000 INFO @ Sat, 06 Jul 2019 05:12:57: 65000000 INFO @ Sat, 06 Jul 2019 05:12:57: 65000000 INFO @ Sat, 06 Jul 2019 05:13:00: 69000000 INFO @ Sat, 06 Jul 2019 05:13:08: 66000000 INFO @ Sat, 06 Jul 2019 05:13:08: 66000000 INFO @ Sat, 06 Jul 2019 05:13:10: 70000000 INFO @ Sat, 06 Jul 2019 05:13:19: 67000000 INFO @ Sat, 06 Jul 2019 05:13:19: 67000000 INFO @ Sat, 06 Jul 2019 05:13:20: 71000000 INFO @ Sat, 06 Jul 2019 05:13:30: 72000000 INFO @ Sat, 06 Jul 2019 05:13:30: 68000000 INFO @ Sat, 06 Jul 2019 05:13:30: 68000000 INFO @ Sat, 06 Jul 2019 05:13:40: 73000000 INFO @ Sat, 06 Jul 2019 05:13:41: 69000000 INFO @ Sat, 06 Jul 2019 05:13:41: 69000000 INFO @ Sat, 06 Jul 2019 05:13:50: 74000000 INFO @ Sat, 06 Jul 2019 05:13:52: 70000000 INFO @ Sat, 06 Jul 2019 05:13:52: 70000000 INFO @ Sat, 06 Jul 2019 05:14:00: 75000000 INFO @ Sat, 06 Jul 2019 05:14:03: 71000000 INFO @ Sat, 06 Jul 2019 05:14:03: 71000000 INFO @ Sat, 06 Jul 2019 05:14:10: 76000000 INFO @ Sat, 06 Jul 2019 05:14:14: 72000000 INFO @ Sat, 06 Jul 2019 05:14:14: 72000000 INFO @ Sat, 06 Jul 2019 05:14:20: 77000000 INFO @ Sat, 06 Jul 2019 05:14:25: 73000000 INFO @ Sat, 06 Jul 2019 05:14:25: 73000000 INFO @ Sat, 06 Jul 2019 05:14:30: 78000000 INFO @ Sat, 06 Jul 2019 05:14:36: 74000000 INFO @ Sat, 06 Jul 2019 05:14:36: 74000000 INFO @ Sat, 06 Jul 2019 05:14:37: #1 tag size is determined as 75 bps INFO @ Sat, 06 Jul 2019 05:14:37: #1 tag size = 75 INFO @ Sat, 06 Jul 2019 05:14:37: #1 total tags in treatment: 38755610 INFO @ Sat, 06 Jul 2019 05:14:37: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 05:14:37: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 05:14:38: #1 tags after filtering in treatment: 15080914 INFO @ Sat, 06 Jul 2019 05:14:38: #1 Redundant rate of treatment: 0.61 INFO @ Sat, 06 Jul 2019 05:14:38: #1 finished! INFO @ Sat, 06 Jul 2019 05:14:38: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 05:14:38: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 05:14:39: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 05:14:39: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 05:14:39: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 06 Jul 2019 05:14:47: 75000000 INFO @ Sat, 06 Jul 2019 05:14:47: 75000000 INFO @ Sat, 06 Jul 2019 05:14:57: 76000000 INFO @ Sat, 06 Jul 2019 05:14:58: 76000000 INFO @ Sat, 06 Jul 2019 05:15:08: 77000000 INFO @ Sat, 06 Jul 2019 05:15:09: 77000000 INFO @ Sat, 06 Jul 2019 05:15:19: 78000000 INFO @ Sat, 06 Jul 2019 05:15:20: 78000000 INFO @ Sat, 06 Jul 2019 05:15:27: #1 tag size is determined as 75 bps INFO @ Sat, 06 Jul 2019 05:15:27: #1 tag size = 75 INFO @ Sat, 06 Jul 2019 05:15:27: #1 total tags in treatment: 38755610 INFO @ Sat, 06 Jul 2019 05:15:27: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 05:15:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 05:15:27: #1 tag size is determined as 75 bps INFO @ Sat, 06 Jul 2019 05:15:27: #1 tag size = 75 INFO @ Sat, 06 Jul 2019 05:15:27: #1 total tags in treatment: 38755610 INFO @ Sat, 06 Jul 2019 05:15:27: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 05:15:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 05:15:28: #1 tags after filtering in treatment: 15080914 INFO @ Sat, 06 Jul 2019 05:15:28: #1 Redundant rate of treatment: 0.61 INFO @ Sat, 06 Jul 2019 05:15:28: #1 finished! INFO @ Sat, 06 Jul 2019 05:15:28: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 05:15:28: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 05:15:28: #1 tags after filtering in treatment: 15080914 INFO @ Sat, 06 Jul 2019 05:15:28: #1 Redundant rate of treatment: 0.61 INFO @ Sat, 06 Jul 2019 05:15:28: #1 finished! INFO @ Sat, 06 Jul 2019 05:15:28: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 05:15:28: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 05:15:29: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 05:15:29: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 05:15:29: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 3 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 06 Jul 2019 05:15:29: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 05:15:29: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 05:15:29: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5126605/SRX5126605.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling