Job ID = 2011816 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 6,163,621 reads read : 12,327,242 reads written : 6,163,621 reads 0-length : 6,163,621 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:29 6163621 reads; of these: 6163621 (100.00%) were unpaired; of these: 564362 (9.16%) aligned 0 times 4993724 (81.02%) aligned exactly 1 time 605535 (9.82%) aligned >1 times 90.84% overall alignment rate Time searching: 00:01:29 Overall time: 00:01:29 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 2875741 / 5599259 = 0.5136 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 06 Jul 2019 02:50:07: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 02:50:07: #1 read tag files... INFO @ Sat, 06 Jul 2019 02:50:07: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 02:50:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 02:50:08: #1 read tag files... INFO @ Sat, 06 Jul 2019 02:50:08: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 02:50:09: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 02:50:09: #1 read tag files... INFO @ Sat, 06 Jul 2019 02:50:09: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 02:50:16: 1000000 INFO @ Sat, 06 Jul 2019 02:50:17: 1000000 INFO @ Sat, 06 Jul 2019 02:50:18: 1000000 INFO @ Sat, 06 Jul 2019 02:50:25: 2000000 INFO @ Sat, 06 Jul 2019 02:50:26: 2000000 INFO @ Sat, 06 Jul 2019 02:50:28: 2000000 INFO @ Sat, 06 Jul 2019 02:50:32: #1 tag size is determined as 51 bps INFO @ Sat, 06 Jul 2019 02:50:32: #1 tag size = 51 INFO @ Sat, 06 Jul 2019 02:50:32: #1 total tags in treatment: 2723518 INFO @ Sat, 06 Jul 2019 02:50:32: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 02:50:32: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 02:50:32: #1 tags after filtering in treatment: 2723518 INFO @ Sat, 06 Jul 2019 02:50:32: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 02:50:32: #1 finished! INFO @ Sat, 06 Jul 2019 02:50:32: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 02:50:32: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 02:50:32: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 02:50:32: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 02:50:32: Process for pairing-model is terminated! INFO @ Sat, 06 Jul 2019 02:50:33: #1 tag size is determined as 51 bps INFO @ Sat, 06 Jul 2019 02:50:33: #1 tag size = 51 INFO @ Sat, 06 Jul 2019 02:50:33: #1 total tags in treatment: 2723518 INFO @ Sat, 06 Jul 2019 02:50:33: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 02:50:33: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 02:50:33: #1 tags after filtering in treatment: 2723518 INFO @ Sat, 06 Jul 2019 02:50:33: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 02:50:33: #1 finished! INFO @ Sat, 06 Jul 2019 02:50:33: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 02:50:33: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 02:50:33: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 02:50:33: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 02:50:33: Process for pairing-model is terminated! INFO @ Sat, 06 Jul 2019 02:50:34: #1 tag size is determined as 51 bps INFO @ Sat, 06 Jul 2019 02:50:34: #1 tag size = 51 INFO @ Sat, 06 Jul 2019 02:50:34: #1 total tags in treatment: 2723518 INFO @ Sat, 06 Jul 2019 02:50:34: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 02:50:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 02:50:34: #1 tags after filtering in treatment: 2723518 INFO @ Sat, 06 Jul 2019 02:50:34: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 02:50:34: #1 finished! INFO @ Sat, 06 Jul 2019 02:50:34: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 02:50:34: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 02:50:35: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 02:50:35: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 02:50:35: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.05_peaks.narrowPeak: No such file or directory cut: /home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.10_peaks.narrowPeak: No such file or directory cut: /home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.05_*.xls’: No such file or directory rm: rm: rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.20_model.r’cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.05_peaks.narrowPeak’cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.10_model.r’: No such file or directory: No such file or directory : No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.10_*.xls’: No such file or directory CompletedMACS2peakCalling rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.20_peaks.narrowPeak’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028246/SRX5028246.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。