Job ID = 2011810 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 6,196,101 reads read : 12,392,202 reads written : 6,196,101 reads 0-length : 6,196,101 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:38 6196101 reads; of these: 6196101 (100.00%) were unpaired; of these: 343330 (5.54%) aligned 0 times 5261372 (84.91%) aligned exactly 1 time 591399 (9.54%) aligned >1 times 94.46% overall alignment rate Time searching: 00:01:38 Overall time: 00:01:38 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 2971652 / 5852771 = 0.5077 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 06 Jul 2019 02:47:49: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 02:47:49: #1 read tag files... INFO @ Sat, 06 Jul 2019 02:47:49: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 02:47:50: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 02:47:50: #1 read tag files... INFO @ Sat, 06 Jul 2019 02:47:50: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 02:47:51: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 02:47:51: #1 read tag files... INFO @ Sat, 06 Jul 2019 02:47:51: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 02:47:57: 1000000 INFO @ Sat, 06 Jul 2019 02:47:58: 1000000 INFO @ Sat, 06 Jul 2019 02:48:01: 1000000 INFO @ Sat, 06 Jul 2019 02:48:05: 2000000 INFO @ Sat, 06 Jul 2019 02:48:06: 2000000 INFO @ Sat, 06 Jul 2019 02:48:11: 2000000 INFO @ Sat, 06 Jul 2019 02:48:12: #1 tag size is determined as 51 bps INFO @ Sat, 06 Jul 2019 02:48:12: #1 tag size = 51 INFO @ Sat, 06 Jul 2019 02:48:12: #1 total tags in treatment: 2881119 INFO @ Sat, 06 Jul 2019 02:48:12: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 02:48:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 02:48:13: #1 tags after filtering in treatment: 2881119 INFO @ Sat, 06 Jul 2019 02:48:13: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 02:48:13: #1 finished! INFO @ Sat, 06 Jul 2019 02:48:13: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 02:48:13: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 02:48:13: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 02:48:13: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 02:48:13: Process for pairing-model is terminated! INFO @ Sat, 06 Jul 2019 02:48:14: #1 tag size is determined as 51 bps INFO @ Sat, 06 Jul 2019 02:48:14: #1 tag size = 51 INFO @ Sat, 06 Jul 2019 02:48:14: #1 total tags in treatment: 2881119 INFO @ Sat, 06 Jul 2019 02:48:14: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 02:48:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 02:48:14: #1 tags after filtering in treatment: 2881119 INFO @ Sat, 06 Jul 2019 02:48:14: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 02:48:14: #1 finished! INFO @ Sat, 06 Jul 2019 02:48:14: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 02:48:14: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 02:48:14: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 02:48:14: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 02:48:14: Process for pairing-model is terminated! INFO @ Sat, 06 Jul 2019 02:48:20: #1 tag size is determined as 51 bps INFO @ Sat, 06 Jul 2019 02:48:20: #1 tag size = 51 INFO @ Sat, 06 Jul 2019 02:48:20: #1 total tags in treatment: 2881119 INFO @ Sat, 06 Jul 2019 02:48:20: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 02:48:20: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 02:48:20: #1 tags after filtering in treatment: 2881119 INFO @ Sat, 06 Jul 2019 02:48:20: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 02:48:20: #1 finished! INFO @ Sat, 06 Jul 2019 02:48:20: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 02:48:20: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 02:48:20: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 02:48:20: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 02:48:20: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.05_peaks.narrowPeak: No such file or directory cut: /home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.10_peaks.narrowPeak: No such file or directory cut: /home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) needLargeMem: trying to allocate 0 bytes (limit: 17179869184) pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.05_peaks.narrowPeak’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.20_peaks.narrowPeak’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.10_*.xls’: No such file or directory CompletedMACS2peakCalling rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028240/SRX5028240.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。