Job ID = 2011779 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 7,640,419 reads read : 15,280,838 reads written : 7,640,419 reads 0-length : 7,640,419 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:51 7640419 reads; of these: 7640419 (100.00%) were unpaired; of these: 597414 (7.82%) aligned 0 times 6203405 (81.19%) aligned exactly 1 time 839600 (10.99%) aligned >1 times 92.18% overall alignment rate Time searching: 00:01:51 Overall time: 00:01:51 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 3337332 / 7043005 = 0.4739 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 06 Jul 2019 02:40:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 02:40:38: #1 read tag files... INFO @ Sat, 06 Jul 2019 02:40:38: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 02:40:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 02:40:38: #1 read tag files... INFO @ Sat, 06 Jul 2019 02:40:38: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 02:40:39: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 02:40:39: #1 read tag files... INFO @ Sat, 06 Jul 2019 02:40:39: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 02:40:48: 1000000 INFO @ Sat, 06 Jul 2019 02:40:48: 1000000 INFO @ Sat, 06 Jul 2019 02:40:51: 1000000 INFO @ Sat, 06 Jul 2019 02:40:57: 2000000 INFO @ Sat, 06 Jul 2019 02:40:58: 2000000 INFO @ Sat, 06 Jul 2019 02:41:03: 2000000 INFO @ Sat, 06 Jul 2019 02:41:07: 3000000 INFO @ Sat, 06 Jul 2019 02:41:08: 3000000 INFO @ Sat, 06 Jul 2019 02:41:13: #1 tag size is determined as 50 bps INFO @ Sat, 06 Jul 2019 02:41:13: #1 tag size = 50 INFO @ Sat, 06 Jul 2019 02:41:13: #1 total tags in treatment: 3705673 INFO @ Sat, 06 Jul 2019 02:41:13: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 02:41:13: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 02:41:14: #1 tags after filtering in treatment: 3705673 INFO @ Sat, 06 Jul 2019 02:41:14: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 02:41:14: #1 finished! INFO @ Sat, 06 Jul 2019 02:41:14: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 02:41:14: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 02:41:14: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 02:41:14: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 02:41:14: Process for pairing-model is terminated! INFO @ Sat, 06 Jul 2019 02:41:14: #1 tag size is determined as 50 bps INFO @ Sat, 06 Jul 2019 02:41:14: #1 tag size = 50 INFO @ Sat, 06 Jul 2019 02:41:14: #1 total tags in treatment: 3705673 INFO @ Sat, 06 Jul 2019 02:41:14: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 02:41:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 02:41:14: #1 tags after filtering in treatment: 3705673 INFO @ Sat, 06 Jul 2019 02:41:14: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 02:41:14: #1 finished! INFO @ Sat, 06 Jul 2019 02:41:14: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 02:41:14: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 02:41:14: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 02:41:14: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 02:41:14: Process for pairing-model is terminated! INFO @ Sat, 06 Jul 2019 02:41:15: 3000000 INFO @ Sat, 06 Jul 2019 02:41:22: #1 tag size is determined as 50 bps INFO @ Sat, 06 Jul 2019 02:41:22: #1 tag size = 50 INFO @ Sat, 06 Jul 2019 02:41:22: #1 total tags in treatment: 3705673 INFO @ Sat, 06 Jul 2019 02:41:22: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 02:41:22: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 02:41:22: #1 tags after filtering in treatment: 3705673 INFO @ Sat, 06 Jul 2019 02:41:22: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 02:41:22: #1 finished! INFO @ Sat, 06 Jul 2019 02:41:22: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 02:41:22: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 02:41:22: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 02:41:22: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 02:41:22: Process for pairing-model is terminated! BedGraph に変換しました。 cut: /home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.05_peaks.narrowPeak: No such file or directory cut: /home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.20_peaks.narrowPeakcut: : No such file or directory/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.10_peaks.narrowPeak : No such file or directory BigWig に変換中... pass1 - making usageList (0 chroms): 1 millis pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) pass1 - making usageList (0 chroms): 1 millis rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.10_*.xls’: No such file or directory needLargeMem: trying to allocate 0 bytes (limit: 17179869184)rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX5028210/SRX5028210.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BigWig に変換しました。