Job ID = 2011037 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 7,121,454 reads read : 14,242,908 reads written : 7,121,454 reads 0-length : 7,121,454 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:18 7121454 reads; of these: 7121454 (100.00%) were unpaired; of these: 522451 (7.34%) aligned 0 times 5775400 (81.10%) aligned exactly 1 time 823603 (11.57%) aligned >1 times 92.66% overall alignment rate Time searching: 00:01:18 Overall time: 00:01:18 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 1387495 / 6599003 = 0.2103 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 06 Jul 2019 01:50:41: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 01:50:41: #1 read tag files... INFO @ Sat, 06 Jul 2019 01:50:41: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 01:50:42: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 01:50:42: #1 read tag files... INFO @ Sat, 06 Jul 2019 01:50:42: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 01:50:43: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 01:50:43: #1 read tag files... INFO @ Sat, 06 Jul 2019 01:50:43: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 01:50:49: 1000000 INFO @ Sat, 06 Jul 2019 01:50:51: 1000000 INFO @ Sat, 06 Jul 2019 01:50:52: 1000000 INFO @ Sat, 06 Jul 2019 01:50:56: 2000000 INFO @ Sat, 06 Jul 2019 01:50:59: 2000000 INFO @ Sat, 06 Jul 2019 01:51:01: 2000000 INFO @ Sat, 06 Jul 2019 01:51:03: 3000000 INFO @ Sat, 06 Jul 2019 01:51:08: 3000000 INFO @ Sat, 06 Jul 2019 01:51:09: 3000000 INFO @ Sat, 06 Jul 2019 01:51:10: 4000000 INFO @ Sat, 06 Jul 2019 01:51:16: 4000000 INFO @ Sat, 06 Jul 2019 01:51:17: 4000000 INFO @ Sat, 06 Jul 2019 01:51:18: 5000000 INFO @ Sat, 06 Jul 2019 01:51:19: #1 tag size is determined as 51 bps INFO @ Sat, 06 Jul 2019 01:51:19: #1 tag size = 51 INFO @ Sat, 06 Jul 2019 01:51:19: #1 total tags in treatment: 5211508 INFO @ Sat, 06 Jul 2019 01:51:19: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 01:51:19: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 01:51:19: #1 tags after filtering in treatment: 5211508 INFO @ Sat, 06 Jul 2019 01:51:19: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 01:51:19: #1 finished! INFO @ Sat, 06 Jul 2019 01:51:19: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 01:51:19: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 01:51:20: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 01:51:20: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 01:51:20: Process for pairing-model is terminated! INFO @ Sat, 06 Jul 2019 01:51:24: 5000000 INFO @ Sat, 06 Jul 2019 01:51:25: 5000000 cut: /home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 06 Jul 2019 01:51:25: #1 tag size is determined as 51 bps INFO @ Sat, 06 Jul 2019 01:51:25: #1 tag size = 51 INFO @ Sat, 06 Jul 2019 01:51:25: #1 total tags in treatment: 5211508 INFO @ Sat, 06 Jul 2019 01:51:25: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 01:51:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 01:51:26: #1 tags after filtering in treatment: 5211508 INFO @ Sat, 06 Jul 2019 01:51:26: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 01:51:26: #1 finished! INFO @ Sat, 06 Jul 2019 01:51:26: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 01:51:26: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 01:51:26: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 01:51:26: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 01:51:26: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 06 Jul 2019 01:51:27: #1 tag size is determined as 51 bps INFO @ Sat, 06 Jul 2019 01:51:27: #1 tag size = 51 INFO @ Sat, 06 Jul 2019 01:51:27: #1 total tags in treatment: 5211508 INFO @ Sat, 06 Jul 2019 01:51:27: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 01:51:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 01:51:27: #1 tags after filtering in treatment: 5211508 INFO @ Sat, 06 Jul 2019 01:51:27: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 01:51:27: #1 finished! INFO @ Sat, 06 Jul 2019 01:51:27: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 01:51:27: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 01:51:27: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 01:51:27: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 01:51:27: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4550117/SRX4550117.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。