Job ID = 2010958 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 7,615,756 reads read : 15,231,512 reads written : 7,615,756 reads 0-length : 7,615,756 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:32 7615756 reads; of these: 7615756 (100.00%) were unpaired; of these: 1316677 (17.29%) aligned 0 times 5588550 (73.38%) aligned exactly 1 time 710529 (9.33%) aligned >1 times 82.71% overall alignment rate Time searching: 00:01:32 Overall time: 00:01:32 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 1087278 / 6299079 = 0.1726 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sat, 06 Jul 2019 01:30:36: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 01:30:36: #1 read tag files... INFO @ Sat, 06 Jul 2019 01:30:36: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 01:30:37: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 01:30:37: #1 read tag files... INFO @ Sat, 06 Jul 2019 01:30:37: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 01:30:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 06 Jul 2019 01:30:38: #1 read tag files... INFO @ Sat, 06 Jul 2019 01:30:38: #1 read treatment tags... INFO @ Sat, 06 Jul 2019 01:30:47: 1000000 INFO @ Sat, 06 Jul 2019 01:30:49: 1000000 INFO @ Sat, 06 Jul 2019 01:30:50: 1000000 INFO @ Sat, 06 Jul 2019 01:30:57: 2000000 INFO @ Sat, 06 Jul 2019 01:31:01: 2000000 INFO @ Sat, 06 Jul 2019 01:31:02: 2000000 INFO @ Sat, 06 Jul 2019 01:31:06: 3000000 INFO @ Sat, 06 Jul 2019 01:31:13: 3000000 INFO @ Sat, 06 Jul 2019 01:31:14: 3000000 INFO @ Sat, 06 Jul 2019 01:31:15: 4000000 INFO @ Sat, 06 Jul 2019 01:31:24: 5000000 INFO @ Sat, 06 Jul 2019 01:31:25: 4000000 INFO @ Sat, 06 Jul 2019 01:31:25: 4000000 INFO @ Sat, 06 Jul 2019 01:31:26: #1 tag size is determined as 66 bps INFO @ Sat, 06 Jul 2019 01:31:26: #1 tag size = 66 INFO @ Sat, 06 Jul 2019 01:31:26: #1 total tags in treatment: 5211801 INFO @ Sat, 06 Jul 2019 01:31:26: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 01:31:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 01:31:26: #1 tags after filtering in treatment: 5211801 INFO @ Sat, 06 Jul 2019 01:31:26: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 01:31:26: #1 finished! INFO @ Sat, 06 Jul 2019 01:31:26: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 01:31:26: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 01:31:27: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 01:31:27: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 01:31:27: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 06 Jul 2019 01:31:36: 5000000 INFO @ Sat, 06 Jul 2019 01:31:36: 5000000 INFO @ Sat, 06 Jul 2019 01:31:38: #1 tag size is determined as 66 bps INFO @ Sat, 06 Jul 2019 01:31:38: #1 tag size = 66 INFO @ Sat, 06 Jul 2019 01:31:38: #1 total tags in treatment: 5211801 INFO @ Sat, 06 Jul 2019 01:31:38: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 01:31:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 01:31:38: #1 tags after filtering in treatment: 5211801 INFO @ Sat, 06 Jul 2019 01:31:38: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 01:31:38: #1 finished! INFO @ Sat, 06 Jul 2019 01:31:38: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 01:31:38: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 06 Jul 2019 01:31:38: #1 tag size is determined as 66 bps INFO @ Sat, 06 Jul 2019 01:31:38: #1 tag size = 66 INFO @ Sat, 06 Jul 2019 01:31:38: #1 total tags in treatment: 5211801 INFO @ Sat, 06 Jul 2019 01:31:38: #1 user defined the maximum tags... INFO @ Sat, 06 Jul 2019 01:31:38: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 06 Jul 2019 01:31:38: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 01:31:38: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 01:31:38: Process for pairing-model is terminated! INFO @ Sat, 06 Jul 2019 01:31:38: #1 tags after filtering in treatment: 5211801 INFO @ Sat, 06 Jul 2019 01:31:38: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 06 Jul 2019 01:31:38: #1 finished! INFO @ Sat, 06 Jul 2019 01:31:38: #2 Build Peak Model... INFO @ Sat, 06 Jul 2019 01:31:38: #2 looking for paired plus/minus strand peaks... cut: /home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 06 Jul 2019 01:31:39: #2 number of paired peaks: 0 WARNING @ Sat, 06 Jul 2019 01:31:39: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 06 Jul 2019 01:31:39: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX4342608/SRX4342608.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。