Job ID = 2010462 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 14,608,348 reads read : 14,608,348 reads written : 14,608,348 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘/home/okishinya/ncbi/public/sra/SRR1029303.sra.cache’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:02:17 14608348 reads; of these: 14608348 (100.00%) were unpaired; of these: 4910235 (33.61%) aligned 0 times 7885487 (53.98%) aligned exactly 1 time 1812626 (12.41%) aligned >1 times 66.39% overall alignment rate Time searching: 00:02:17 Overall time: 00:02:17 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 7034525 / 9698113 = 0.7253 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 22:44:27: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 22:44:27: #1 read tag files... INFO @ Fri, 05 Jul 2019 22:44:27: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 22:44:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 22:44:28: #1 read tag files... INFO @ Fri, 05 Jul 2019 22:44:28: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 22:44:29: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 22:44:29: #1 read tag files... INFO @ Fri, 05 Jul 2019 22:44:29: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 22:44:35: 1000000 INFO @ Fri, 05 Jul 2019 22:44:36: 1000000 INFO @ Fri, 05 Jul 2019 22:44:37: 1000000 INFO @ Fri, 05 Jul 2019 22:44:43: 2000000 INFO @ Fri, 05 Jul 2019 22:44:44: 2000000 INFO @ Fri, 05 Jul 2019 22:44:46: 2000000 INFO @ Fri, 05 Jul 2019 22:44:48: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 22:44:48: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 22:44:48: #1 total tags in treatment: 2663588 INFO @ Fri, 05 Jul 2019 22:44:48: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 22:44:48: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 22:44:48: #1 tags after filtering in treatment: 2663588 INFO @ Fri, 05 Jul 2019 22:44:48: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 22:44:48: #1 finished! INFO @ Fri, 05 Jul 2019 22:44:48: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 22:44:48: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 22:44:48: #2 number of paired peaks: 44 WARNING @ Fri, 05 Jul 2019 22:44:48: Too few paired peaks (44) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 22:44:48: Process for pairing-model is terminated! INFO @ Fri, 05 Jul 2019 22:44:49: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 22:44:49: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 22:44:49: #1 total tags in treatment: 2663588 INFO @ Fri, 05 Jul 2019 22:44:49: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 22:44:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 22:44:49: #1 tags after filtering in treatment: 2663588 INFO @ Fri, 05 Jul 2019 22:44:49: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 22:44:49: #1 finished! INFO @ Fri, 05 Jul 2019 22:44:49: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 22:44:49: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 22:44:49: #2 number of paired peaks: 44 WARNING @ Fri, 05 Jul 2019 22:44:49: Too few paired peaks (44) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 22:44:49: Process for pairing-model is terminated! INFO @ Fri, 05 Jul 2019 22:44:51: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 22:44:51: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 22:44:51: #1 total tags in treatment: 2663588 INFO @ Fri, 05 Jul 2019 22:44:51: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 22:44:51: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 22:44:51: #1 tags after filtering in treatment: 2663588 INFO @ Fri, 05 Jul 2019 22:44:51: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 22:44:51: #1 finished! INFO @ Fri, 05 Jul 2019 22:44:51: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 22:44:51: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 22:44:51: #2 number of paired peaks: 44 WARNING @ Fri, 05 Jul 2019 22:44:51: Too few paired peaks (44) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 22:44:51: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.10_peaks.narrowPeak: No such file or directory cut: /home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.20_peaks.narrowPeak: No such file or directory cut: /home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) needLargeMem: trying to allocate 0 bytes (limit: 17179869184) pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.10_peaks.narrowPeak’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.05_*.xls’: No such file or directory CompletedMACS2peakCalling rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.05_peaks.narrowPeak’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.20_model.r’CompletedMACS2peakCalling : No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377146/SRX377146.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。