Job ID = 2010447 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 12,903,294 reads read : 12,903,294 reads written : 12,903,294 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:02:06 12903294 reads; of these: 12903294 (100.00%) were unpaired; of these: 6566784 (50.89%) aligned 0 times 5052018 (39.15%) aligned exactly 1 time 1284492 (9.95%) aligned >1 times 49.11% overall alignment rate Time searching: 00:02:06 Overall time: 00:02:06 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 3536103 / 6336510 = 0.5581 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 22:46:38: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 22:46:38: #1 read tag files... INFO @ Fri, 05 Jul 2019 22:46:38: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 22:46:39: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 22:46:39: #1 read tag files... INFO @ Fri, 05 Jul 2019 22:46:39: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 22:46:40: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 22:46:40: #1 read tag files... INFO @ Fri, 05 Jul 2019 22:46:40: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 22:46:48: 1000000 INFO @ Fri, 05 Jul 2019 22:46:49: 1000000 INFO @ Fri, 05 Jul 2019 22:46:49: 1000000 INFO @ Fri, 05 Jul 2019 22:46:58: 2000000 INFO @ Fri, 05 Jul 2019 22:46:58: 2000000 INFO @ Fri, 05 Jul 2019 22:46:59: 2000000 INFO @ Fri, 05 Jul 2019 22:47:04: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 22:47:04: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 22:47:04: #1 total tags in treatment: 2800407 INFO @ Fri, 05 Jul 2019 22:47:04: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 22:47:04: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 22:47:05: #1 tags after filtering in treatment: 2800407 INFO @ Fri, 05 Jul 2019 22:47:05: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 22:47:05: #1 finished! INFO @ Fri, 05 Jul 2019 22:47:05: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 22:47:05: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 22:47:05: #2 number of paired peaks: 22 WARNING @ Fri, 05 Jul 2019 22:47:05: Too few paired peaks (22) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 22:47:05: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 22:47:06: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 22:47:06: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 22:47:06: #1 total tags in treatment: 2800407 INFO @ Fri, 05 Jul 2019 22:47:06: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 22:47:06: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 22:47:06: #1 tags after filtering in treatment: 2800407 INFO @ Fri, 05 Jul 2019 22:47:06: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 22:47:06: #1 finished! INFO @ Fri, 05 Jul 2019 22:47:06: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 22:47:06: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 22:47:06: #2 number of paired peaks: 22 WARNING @ Fri, 05 Jul 2019 22:47:06: Too few paired peaks (22) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 22:47:06: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 22:47:07: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 22:47:07: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 22:47:07: #1 total tags in treatment: 2800407 INFO @ Fri, 05 Jul 2019 22:47:07: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 22:47:07: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 22:47:07: #1 tags after filtering in treatment: 2800407 INFO @ Fri, 05 Jul 2019 22:47:07: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 22:47:07: #1 finished! INFO @ Fri, 05 Jul 2019 22:47:07: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 22:47:07: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 22:47:07: #2 number of paired peaks: 22 WARNING @ Fri, 05 Jul 2019 22:47:07: Too few paired peaks (22) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 22:47:07: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX377133/SRX377133.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。