Job ID = 2640842 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 15,486,428 reads read : 15,486,428 reads written : 15,486,428 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘/home/okishinya/ncbi/public/sra/SRR1009218.sra.cache’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:03:57 15486428 reads; of these: 15486428 (100.00%) were unpaired; of these: 7486691 (48.34%) aligned 0 times 6388410 (41.25%) aligned exactly 1 time 1611327 (10.40%) aligned >1 times 51.66% overall alignment rate Time searching: 00:03:57 Overall time: 00:03:57 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_rmdupse_core] 2705145 / 7999737 = 0.3382 in library ' ' BAM に変換しました。 Bed ファイルを作成中... INFO @ Sat, 24 Aug 2019 19:35:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 24 Aug 2019 19:35:58: #1 read tag files... INFO @ Sat, 24 Aug 2019 19:35:58: #1 read treatment tags... INFO @ Sat, 24 Aug 2019 19:36:08: 1000000 INFO @ Sat, 24 Aug 2019 19:36:18: 2000000 INFO @ Sat, 24 Aug 2019 19:36:28: 3000000 INFO @ Sat, 24 Aug 2019 19:36:28: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 24 Aug 2019 19:36:28: #1 read tag files... INFO @ Sat, 24 Aug 2019 19:36:28: #1 read treatment tags... INFO @ Sat, 24 Aug 2019 19:36:37: 4000000 INFO @ Sat, 24 Aug 2019 19:36:37: 1000000 INFO @ Sat, 24 Aug 2019 19:36:46: 5000000 INFO @ Sat, 24 Aug 2019 19:36:46: 2000000 INFO @ Sat, 24 Aug 2019 19:36:49: #1 tag size is determined as 100 bps INFO @ Sat, 24 Aug 2019 19:36:49: #1 tag size = 100 INFO @ Sat, 24 Aug 2019 19:36:49: #1 total tags in treatment: 5294592 INFO @ Sat, 24 Aug 2019 19:36:49: #1 user defined the maximum tags... INFO @ Sat, 24 Aug 2019 19:36:49: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 24 Aug 2019 19:36:49: #1 tags after filtering in treatment: 5294592 INFO @ Sat, 24 Aug 2019 19:36:49: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 24 Aug 2019 19:36:49: #1 finished! INFO @ Sat, 24 Aug 2019 19:36:49: #2 Build Peak Model... INFO @ Sat, 24 Aug 2019 19:36:49: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 24 Aug 2019 19:36:49: #2 number of paired peaks: 0 WARNING @ Sat, 24 Aug 2019 19:36:49: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 24 Aug 2019 19:36:49: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 24 Aug 2019 19:36:54: 3000000 BedGraph に変換中... INFO @ Sat, 24 Aug 2019 19:36:58: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sat, 24 Aug 2019 19:36:58: #1 read tag files... INFO @ Sat, 24 Aug 2019 19:36:58: #1 read treatment tags... INFO @ Sat, 24 Aug 2019 19:37:03: 4000000 INFO @ Sat, 24 Aug 2019 19:37:09: 1000000 INFO @ Sat, 24 Aug 2019 19:37:11: 5000000 INFO @ Sat, 24 Aug 2019 19:37:14: #1 tag size is determined as 100 bps INFO @ Sat, 24 Aug 2019 19:37:14: #1 tag size = 100 INFO @ Sat, 24 Aug 2019 19:37:14: #1 total tags in treatment: 5294592 INFO @ Sat, 24 Aug 2019 19:37:14: #1 user defined the maximum tags... INFO @ Sat, 24 Aug 2019 19:37:14: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 24 Aug 2019 19:37:14: #1 tags after filtering in treatment: 5294592 INFO @ Sat, 24 Aug 2019 19:37:14: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 24 Aug 2019 19:37:14: #1 finished! INFO @ Sat, 24 Aug 2019 19:37:14: #2 Build Peak Model... INFO @ Sat, 24 Aug 2019 19:37:14: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 24 Aug 2019 19:37:14: #2 number of paired peaks: 0 WARNING @ Sat, 24 Aug 2019 19:37:14: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 24 Aug 2019 19:37:14: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Sat, 24 Aug 2019 19:37:19: 2000000 INFO @ Sat, 24 Aug 2019 19:37:29: 3000000 INFO @ Sat, 24 Aug 2019 19:37:38: 4000000 INFO @ Sat, 24 Aug 2019 19:37:47: 5000000 INFO @ Sat, 24 Aug 2019 19:37:50: #1 tag size is determined as 100 bps INFO @ Sat, 24 Aug 2019 19:37:50: #1 tag size = 100 INFO @ Sat, 24 Aug 2019 19:37:50: #1 total tags in treatment: 5294592 INFO @ Sat, 24 Aug 2019 19:37:50: #1 user defined the maximum tags... INFO @ Sat, 24 Aug 2019 19:37:50: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sat, 24 Aug 2019 19:37:50: #1 tags after filtering in treatment: 5294592 INFO @ Sat, 24 Aug 2019 19:37:50: #1 Redundant rate of treatment: 0.00 INFO @ Sat, 24 Aug 2019 19:37:50: #1 finished! INFO @ Sat, 24 Aug 2019 19:37:50: #2 Build Peak Model... INFO @ Sat, 24 Aug 2019 19:37:50: #2 looking for paired plus/minus strand peaks... INFO @ Sat, 24 Aug 2019 19:37:50: #2 number of paired peaks: 0 WARNING @ Sat, 24 Aug 2019 19:37:50: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sat, 24 Aug 2019 19:37:50: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363336/SRX363336.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。