Job ID = 2010331 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 20,724,910 reads read : 20,724,910 reads written : 20,724,910 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘/home/okishinya/ncbi/public/sra/SRR1009214.sra.cache’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:05:49 20724910 reads; of these: 20724910 (100.00%) were unpaired; of these: 8448596 (40.77%) aligned 0 times 9862993 (47.59%) aligned exactly 1 time 2413321 (11.64%) aligned >1 times 59.23% overall alignment rate Time searching: 00:05:49 Overall time: 00:05:49 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 5740199 / 12276314 = 0.4676 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 22:18:15: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 22:18:15: #1 read tag files... INFO @ Fri, 05 Jul 2019 22:18:15: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 22:18:16: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 22:18:16: #1 read tag files... INFO @ Fri, 05 Jul 2019 22:18:16: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 22:18:17: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 22:18:17: #1 read tag files... INFO @ Fri, 05 Jul 2019 22:18:17: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 22:18:24: 1000000 INFO @ Fri, 05 Jul 2019 22:18:26: 1000000 INFO @ Fri, 05 Jul 2019 22:18:27: 1000000 INFO @ Fri, 05 Jul 2019 22:18:34: 2000000 INFO @ Fri, 05 Jul 2019 22:18:36: 2000000 INFO @ Fri, 05 Jul 2019 22:18:37: 2000000 INFO @ Fri, 05 Jul 2019 22:18:42: 3000000 INFO @ Fri, 05 Jul 2019 22:18:46: 3000000 INFO @ Fri, 05 Jul 2019 22:18:47: 3000000 INFO @ Fri, 05 Jul 2019 22:18:51: 4000000 INFO @ Fri, 05 Jul 2019 22:18:56: 4000000 INFO @ Fri, 05 Jul 2019 22:18:57: 4000000 INFO @ Fri, 05 Jul 2019 22:18:59: 5000000 INFO @ Fri, 05 Jul 2019 22:19:06: 5000000 INFO @ Fri, 05 Jul 2019 22:19:06: 5000000 INFO @ Fri, 05 Jul 2019 22:19:08: 6000000 INFO @ Fri, 05 Jul 2019 22:19:12: #1 tag size is determined as 100 bps INFO @ Fri, 05 Jul 2019 22:19:12: #1 tag size = 100 INFO @ Fri, 05 Jul 2019 22:19:12: #1 total tags in treatment: 6536115 INFO @ Fri, 05 Jul 2019 22:19:12: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 22:19:12: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 22:19:12: #1 tags after filtering in treatment: 6536115 INFO @ Fri, 05 Jul 2019 22:19:12: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 22:19:12: #1 finished! INFO @ Fri, 05 Jul 2019 22:19:12: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 22:19:12: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 22:19:13: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 22:19:13: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 22:19:13: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 22:19:15: 6000000 INFO @ Fri, 05 Jul 2019 22:19:16: 6000000 INFO @ Fri, 05 Jul 2019 22:19:21: #1 tag size is determined as 100 bps INFO @ Fri, 05 Jul 2019 22:19:21: #1 tag size = 100 INFO @ Fri, 05 Jul 2019 22:19:21: #1 total tags in treatment: 6536115 INFO @ Fri, 05 Jul 2019 22:19:21: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 22:19:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 22:19:21: #1 tags after filtering in treatment: 6536115 INFO @ Fri, 05 Jul 2019 22:19:21: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 22:19:21: #1 finished! INFO @ Fri, 05 Jul 2019 22:19:21: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 22:19:21: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 22:19:21: #1 tag size is determined as 100 bps INFO @ Fri, 05 Jul 2019 22:19:21: #1 tag size = 100 INFO @ Fri, 05 Jul 2019 22:19:21: #1 total tags in treatment: 6536115 INFO @ Fri, 05 Jul 2019 22:19:21: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 22:19:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 22:19:21: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 22:19:21: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 22:19:21: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.10_peaks.narrowPeak: No such file or directory INFO @ Fri, 05 Jul 2019 22:19:21: #1 tags after filtering in treatment: 6536115 INFO @ Fri, 05 Jul 2019 22:19:21: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 22:19:21: #1 finished! INFO @ Fri, 05 Jul 2019 22:19:21: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 22:19:21: #2 looking for paired plus/minus strand peaks... pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 22:19:22: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 22:19:22: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 22:19:22: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX363332/SRX363332.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。