Job ID = 10453792 sra ファイルのダウンロード中... Completed: 253767K bytes transferred in 4 seconds (425941K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 14083350 spots for /home/okishinya/chipatlas/results/sacCer3/SRX3560292/SRR6470361.sra Written 14083350 spots total rm: cannot remove `[DSE]RX*': No such file or directory rm: cannot remove `[DSE]RR*.fastq': No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Warning: skipping read 'SRR6470361.44618 44618 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.44618 44618 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.66480 66480 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.66480 66480 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.151634 151634 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.151634 151634 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.180363 180363 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.180363 180363 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.387852 387852 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.387852 387852 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.432617 432617 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.432617 432617 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.682843 682843 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.682843 682843 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.780517 780517 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.780517 780517 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.875951 875951 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.875951 875951 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.906526 906526 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.906526 906526 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.958726 958726 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.958726 958726 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.1130699 1130699 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.1130699 1130699 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.1276779 1276779 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.1276779 1276779 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.1447067 1447067 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.1447067 1447067 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.1605072 1605072 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.1605072 1605072 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.1625510 1625510 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.1625510 1625510 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.1845871 1845871 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.1845871 1845871 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.1851409 1851409 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.1851409 1851409 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.1970976 1970976 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.1970976 1970976 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.2046100 2046100 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.2046100 2046100 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.2235461 2235461 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.2235461 2235461 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.2342959 2342959 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.2342959 2342959 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.2364039 2364039 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.2364039 2364039 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.2460193 2460193 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.2460193 2460193 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.2531623 2531623 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.2531623 2531623 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.2573308 2573308 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.2573308 2573308 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.2613497 2613497 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.2613497 2613497 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.2754960 2754960 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.2754960 2754960 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.2774494 2774494 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.2774494 2774494 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.2881420 2881420 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.2881420 2881420 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.2923695 2923695 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.2923695 2923695 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.3382142 3382142 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.3382142 3382142 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.3416409 3416409 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.3416409 3416409 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.3518233 3518233 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.3518233 3518233 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.3606751 3606751 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.3606751 3606751 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.3669977 3669977 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.3669977 3669977 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.3688681 3688681 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.3688681 3688681 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.3692469 3692469 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.3692469 3692469 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.3789781 3789781 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.3789781 3789781 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.3844080 3844080 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.3844080 3844080 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.3844566 3844566 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.3844566 3844566 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4012160 4012160 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4012160 4012160 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4074182 4074182 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4074182 4074182 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4120156 4120156 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4120156 4120156 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4159993 4159993 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4159993 4159993 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4189174 4189174 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4189174 4189174 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4191532 4191532 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4191532 4191532 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4195267 4195267 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4195267 4195267 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4198291 4198291 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4198291 4198291 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4243549 4243549 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4243549 4243549 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4423423 4423423 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4423423 4423423 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4593473 4593473 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4593473 4593473 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4607965 4607965 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4607965 4607965 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4642883 4642883 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4642883 4642883 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4646134 4646134 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4646134 4646134 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4681362 4681362 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4681362 4681362 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4779260 4779260 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4779260 4779260 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4789602 4789602 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4789602 4789602 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4811175 4811175 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4811175 4811175 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.4817238 4817238 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.4817238 4817238 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.5289293 5289293 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.5289293 5289293 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.5391354 5391354 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.5391354 5391354 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.5649677 5649677 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.5649677 5649677 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.5650341 5650341 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.5650341 5650341 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.5815627 5815627 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.5815627 5815627 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.5909490 5909490 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.5909490 5909490 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.6060424 6060424 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.6060424 6060424 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.6101089 6101089 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.6101089 6101089 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.6120543 6120543 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.6120543 6120543 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.6164044 6164044 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.6164044 6164044 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.6325170 6325170 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.6325170 6325170 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.6339532 6339532 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.6339532 6339532 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.6402040 6402040 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.6402040 6402040 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.6659991 6659991 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.6659991 6659991 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.6696834 6696834 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.6696834 6696834 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.6830596 6830596 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.6830596 6830596 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.6846789 6846789 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.6846789 6846789 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.6862688 6862688 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.6862688 6862688 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.7051711 7051711 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.7051711 7051711 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.7200264 7200264 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.7200264 7200264 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.7213152 7213152 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.7213152 7213152 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.7320765 7320765 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.7320765 7320765 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.7398008 7398008 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.7398008 7398008 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.7491082 7491082 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.7491082 7491082 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.7554404 7554404 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.7554404 7554404 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.7602068 7602068 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.7602068 7602068 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.7801663 7801663 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.7801663 7801663 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.7923273 7923273 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.7923273 7923273 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.7974774 7974774 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.7974774 7974774 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.7976982 7976982 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.7976982 7976982 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8188321 8188321 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8188321 8188321 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8277196 8277196 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8277196 8277196 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8310979 8310979 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8310979 8310979 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8361197 8361197 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8361197 8361197 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8404845 8404845 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8404845 8404845 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8415783 8415783 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8415783 8415783 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8493604 8493604 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8493604 8493604 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8572063 8572063 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8572063 8572063 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8608141 8608141 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8608141 8608141 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8836483 8836483 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8836483 8836483 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8885613 8885613 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8885613 8885613 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8943532 8943532 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8943532 8943532 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8992574 8992574 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8992574 8992574 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.8998295 8998295 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.8998295 8998295 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.9025615 9025615 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.9025615 9025615 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.9240847 9240847 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.9240847 9240847 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.9347549 9347549 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.9347549 9347549 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.9416080 9416080 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.9416080 9416080 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.9419295 9419295 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.9419295 9419295 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.9426865 9426865 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.9426865 9426865 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.9546493 9546493 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.9546493 9546493 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.9735498 9735498 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.9735498 9735498 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.9748008 9748008 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.9748008 9748008 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.9776463 9776463 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.9776463 9776463 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.9936084 9936084 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.9936084 9936084 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10052689 10052689 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10052689 10052689 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10063857 10063857 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10063857 10063857 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10237792 10237792 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10237792 10237792 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10253288 10253288 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10253288 10253288 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10308371 10308371 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10308371 10308371 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10340152 10340152 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10340152 10340152 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10481994 10481994 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10481994 10481994 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10485027 10485027 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10485027 10485027 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10493457 10493457 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10493457 10493457 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10530820 10530820 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10530820 10530820 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10678659 10678659 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10678659 10678659 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10825859 10825859 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10825859 10825859 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10889876 10889876 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10889876 10889876 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.10975312 10975312 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.10975312 10975312 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11106640 11106640 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11106640 11106640 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11252606 11252606 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11252606 11252606 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11274871 11274871 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11274871 11274871 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11326364 11326364 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11326364 11326364 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11391812 11391812 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11391812 11391812 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11403506 11403506 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11403506 11403506 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11411497 11411497 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11411497 11411497 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11430375 11430375 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11430375 11430375 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11627635 11627635 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11627635 11627635 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11633564 11633564 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11633564 11633564 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11696074 11696074 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11696074 11696074 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11706489 11706489 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11706489 11706489 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11918597 11918597 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11918597 11918597 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11931889 11931889 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11931889 11931889 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.11969629 11969629 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.11969629 11969629 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.12092268 12092268 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.12092268 12092268 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.12170337 12170337 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.12170337 12170337 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.12719791 12719791 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.12719791 12719791 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.12963742 12963742 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.12963742 12963742 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13027605 13027605 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13027605 13027605 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13097930 13097930 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13097930 13097930 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13145132 13145132 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13145132 13145132 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13210177 13210177 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13210177 13210177 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13217337 13217337 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13217337 13217337 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13268600 13268600 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13268600 13268600 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13347056 13347056 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13347056 13347056 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13387992 13387992 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13387992 13387992 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13459334 13459334 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13459334 13459334 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13493485 13493485 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13493485 13493485 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13803079 13803079 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13803079 13803079 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13803385 13803385 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13803385 13803385 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.13977800 13977800 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.13977800 13977800 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470361.14065732 14065732 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470361.14065732 14065732 length=1' because it was < 2 characters long Multiseed full-index search: 00:03:53 14083350 reads; of these: 14083350 (100.00%) were unpaired; of these: 1481209 (10.52%) aligned 0 times 10821362 (76.84%) aligned exactly 1 time 1780779 (12.64%) aligned >1 times 89.48% overall alignment rate Time searching: 00:03:53 Overall time: 00:03:53 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 4508971 / 12602141 = 0.3578 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Thu, 08 Feb 2018 18:43:17: # Command line: callpeak -t SRX3560292.bam -f BAM -g 12100000 -n SRX3560292.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX3560292.05 # format = BAM # ChIP-seq file = ['SRX3560292.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 08 Feb 2018 18:43:17: #1 read tag files... INFO @ Thu, 08 Feb 2018 18:43:17: #1 read treatment tags... INFO @ Thu, 08 Feb 2018 18:43:17: # Command line: callpeak -t SRX3560292.bam -f BAM -g 12100000 -n SRX3560292.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX3560292.10 # format = BAM # ChIP-seq file = ['SRX3560292.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 08 Feb 2018 18:43:17: #1 read tag files... INFO @ Thu, 08 Feb 2018 18:43:17: #1 read treatment tags... INFO @ Thu, 08 Feb 2018 18:43:17: # Command line: callpeak -t SRX3560292.bam -f BAM -g 12100000 -n SRX3560292.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX3560292.20 # format = BAM # ChIP-seq file = ['SRX3560292.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 08 Feb 2018 18:43:17: #1 read tag files... INFO @ Thu, 08 Feb 2018 18:43:17: #1 read treatment tags... INFO @ Thu, 08 Feb 2018 18:43:26: 1000000 INFO @ Thu, 08 Feb 2018 18:43:26: 1000000 INFO @ Thu, 08 Feb 2018 18:43:26: 1000000 INFO @ Thu, 08 Feb 2018 18:43:34: 2000000 INFO @ Thu, 08 Feb 2018 18:43:35: 2000000 INFO @ Thu, 08 Feb 2018 18:43:36: 2000000 INFO @ Thu, 08 Feb 2018 18:43:42: 3000000 INFO @ Thu, 08 Feb 2018 18:43:44: 3000000 INFO @ Thu, 08 Feb 2018 18:43:45: 3000000 INFO @ Thu, 08 Feb 2018 18:43:50: 4000000 INFO @ Thu, 08 Feb 2018 18:43:54: 4000000 INFO @ Thu, 08 Feb 2018 18:43:54: 4000000 INFO @ Thu, 08 Feb 2018 18:43:59: 5000000 INFO @ Thu, 08 Feb 2018 18:44:03: 5000000 INFO @ Thu, 08 Feb 2018 18:44:03: 5000000 INFO @ Thu, 08 Feb 2018 18:44:07: 6000000 INFO @ Thu, 08 Feb 2018 18:44:12: 6000000 INFO @ Thu, 08 Feb 2018 18:44:12: 6000000 INFO @ Thu, 08 Feb 2018 18:44:15: 7000000 INFO @ Thu, 08 Feb 2018 18:44:21: 7000000 INFO @ Thu, 08 Feb 2018 18:44:21: 7000000 INFO @ Thu, 08 Feb 2018 18:44:23: 8000000 INFO @ Thu, 08 Feb 2018 18:44:24: #1 tag size is determined as 41 bps INFO @ Thu, 08 Feb 2018 18:44:24: #1 tag size = 41 INFO @ Thu, 08 Feb 2018 18:44:24: #1 total tags in treatment: 8093170 INFO @ Thu, 08 Feb 2018 18:44:24: #1 user defined the maximum tags... INFO @ Thu, 08 Feb 2018 18:44:24: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 08 Feb 2018 18:44:24: #1 tags after filtering in treatment: 8093170 INFO @ Thu, 08 Feb 2018 18:44:24: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 08 Feb 2018 18:44:24: #1 finished! INFO @ Thu, 08 Feb 2018 18:44:24: #2 Build Peak Model... INFO @ Thu, 08 Feb 2018 18:44:24: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 08 Feb 2018 18:44:25: #2 number of paired peaks: 0 WARNING @ Thu, 08 Feb 2018 18:44:25: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 08 Feb 2018 18:44:25: Process for pairing-model is terminated! cat: SRX3560292.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3560292.10_model.r': No such file or directory rm: cannot remove `SRX3560292.10_*.xls': No such file or directory rm: cannot remove `SRX3560292.10_peaks.narrowPeak': No such file or directory CompletedMACS2peakCalling INFO @ Thu, 08 Feb 2018 18:44:30: 8000000 INFO @ Thu, 08 Feb 2018 18:44:30: 8000000 INFO @ Thu, 08 Feb 2018 18:44:31: #1 tag size is determined as 41 bps INFO @ Thu, 08 Feb 2018 18:44:31: #1 tag size = 41 INFO @ Thu, 08 Feb 2018 18:44:31: #1 total tags in treatment: 8093170 INFO @ Thu, 08 Feb 2018 18:44:31: #1 user defined the maximum tags... INFO @ Thu, 08 Feb 2018 18:44:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 08 Feb 2018 18:44:31: #1 tags after filtering in treatment: 8093170 INFO @ Thu, 08 Feb 2018 18:44:31: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 08 Feb 2018 18:44:31: #1 finished! INFO @ Thu, 08 Feb 2018 18:44:31: #2 Build Peak Model... INFO @ Thu, 08 Feb 2018 18:44:31: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 08 Feb 2018 18:44:31: #1 tag size is determined as 41 bps INFO @ Thu, 08 Feb 2018 18:44:31: #1 tag size = 41 INFO @ Thu, 08 Feb 2018 18:44:31: #1 total tags in treatment: 8093170 INFO @ Thu, 08 Feb 2018 18:44:31: #1 user defined the maximum tags... INFO @ Thu, 08 Feb 2018 18:44:31: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 08 Feb 2018 18:44:31: #1 tags after filtering in treatment: 8093170 INFO @ Thu, 08 Feb 2018 18:44:31: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 08 Feb 2018 18:44:31: #1 finished! INFO @ Thu, 08 Feb 2018 18:44:31: #2 Build Peak Model... INFO @ Thu, 08 Feb 2018 18:44:31: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 08 Feb 2018 18:44:32: #2 number of paired peaks: 0 WARNING @ Thu, 08 Feb 2018 18:44:32: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 08 Feb 2018 18:44:32: Process for pairing-model is terminated! cat: SRX3560292.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3560292.05_model.r': No such file or directory rm: cannot remove `SRX3560292.05_*.xls': No such file or directory rm: cannot remove `SRX3560292.05_peaks.narrowPeak': No such file or directory CompletedMACS2peakCalling INFO @ Thu, 08 Feb 2018 18:44:32: #2 number of paired peaks: 0 WARNING @ Thu, 08 Feb 2018 18:44:32: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 08 Feb 2018 18:44:32: Process for pairing-model is terminated! cat: SRX3560292.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3560292.20_model.r': No such file or directory rm: cannot remove `SRX3560292.20_*.xls': No such file or directory rm: cannot remove `SRX3560292.20_peaks.narrowPeak': No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。