Job ID = 10453790 sra ファイルのダウンロード中... Completed: 234687K bytes transferred in 6 seconds (287447K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 12906564 spots for /home/okishinya/chipatlas/results/sacCer3/SRX3560290/SRR6470363.sra Written 12906564 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Warning: skipping read 'SRR6470363.91014 91014 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.91014 91014 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.213050 213050 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.213050 213050 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.225917 225917 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.225917 225917 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.303170 303170 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.303170 303170 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.431889 431889 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.431889 431889 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.472979 472979 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.472979 472979 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.473996 473996 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.473996 473996 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.482887 482887 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.482887 482887 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.572358 572358 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.572358 572358 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.677070 677070 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.677070 677070 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.687978 687978 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.687978 687978 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.705008 705008 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.705008 705008 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.713910 713910 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.713910 713910 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.849348 849348 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.849348 849348 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.971508 971508 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.971508 971508 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1134685 1134685 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1134685 1134685 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1156291 1156291 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1156291 1156291 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1210579 1210579 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1210579 1210579 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1229910 1229910 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1229910 1229910 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1274731 1274731 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1274731 1274731 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1278813 1278813 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1278813 1278813 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1279086 1279086 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1279086 1279086 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1304178 1304178 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1304178 1304178 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1441683 1441683 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1441683 1441683 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1491495 1491495 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1491495 1491495 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1708061 1708061 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1708061 1708061 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1726648 1726648 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1726648 1726648 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1762260 1762260 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1762260 1762260 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1868595 1868595 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1868595 1868595 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1952497 1952497 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1952497 1952497 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.1958737 1958737 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.1958737 1958737 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2048919 2048919 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2048919 2048919 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2127836 2127836 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2127836 2127836 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2149756 2149756 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2149756 2149756 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2152646 2152646 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2152646 2152646 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2211775 2211775 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2211775 2211775 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2229601 2229601 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2229601 2229601 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2351609 2351609 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2351609 2351609 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2356473 2356473 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2356473 2356473 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2386881 2386881 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2386881 2386881 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2648067 2648067 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2648067 2648067 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2732901 2732901 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2732901 2732901 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2954870 2954870 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2954870 2954870 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.2982148 2982148 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.2982148 2982148 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3048778 3048778 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3048778 3048778 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3121651 3121651 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3121651 3121651 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3157521 3157521 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3157521 3157521 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3212403 3212403 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3212403 3212403 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3291306 3291306 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3291306 3291306 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3344120 3344120 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3344120 3344120 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3360526 3360526 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3360526 3360526 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3375572 3375572 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3375572 3375572 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3515701 3515701 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3515701 3515701 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3520565 3520565 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3520565 3520565 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3544769 3544769 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3544769 3544769 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3743256 3743256 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3743256 3743256 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3869667 3869667 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3869667 3869667 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.3981561 3981561 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.3981561 3981561 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4002943 4002943 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4002943 4002943 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4054204 4054204 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4054204 4054204 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4076234 4076234 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4076234 4076234 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4076827 4076827 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4076827 4076827 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4083116 4083116 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4083116 4083116 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4083409 4083409 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4083409 4083409 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4218585 4218585 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4218585 4218585 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4223998 4223998 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4223998 4223998 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4240002 4240002 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4240002 4240002 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4291403 4291403 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4291403 4291403 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4331947 4331947 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4331947 4331947 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4343442 4343442 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4343442 4343442 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4492433 4492433 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4492433 4492433 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4541265 4541265 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4541265 4541265 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4656135 4656135 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4656135 4656135 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4928368 4928368 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4928368 4928368 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4928454 4928454 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4928454 4928454 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.4963200 4963200 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.4963200 4963200 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.5090716 5090716 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.5090716 5090716 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.5184098 5184098 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.5184098 5184098 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.5359742 5359742 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.5359742 5359742 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.5542498 5542498 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.5542498 5542498 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.5722939 5722939 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.5722939 5722939 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.5815145 5815145 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.5815145 5815145 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.5932350 5932350 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.5932350 5932350 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6130401 6130401 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6130401 6130401 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6146262 6146262 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6146262 6146262 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6225008 6225008 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6225008 6225008 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6249157 6249157 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6249157 6249157 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6252115 6252115 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6252115 6252115 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6259064 6259064 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6259064 6259064 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6392655 6392655 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6392655 6392655 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6432677 6432677 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6432677 6432677 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6488717 6488717 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6488717 6488717 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6496406 6496406 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6496406 6496406 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6536611 6536611 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6536611 6536611 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6595275 6595275 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6595275 6595275 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6601285 6601285 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6601285 6601285 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6682735 6682735 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6682735 6682735 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6808939 6808939 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6808939 6808939 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6886003 6886003 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6886003 6886003 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6889924 6889924 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6889924 6889924 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6920039 6920039 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6920039 6920039 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.6988973 6988973 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.6988973 6988973 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.7503900 7503900 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.7503900 7503900 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.7515515 7515515 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.7515515 7515515 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.7573848 7573848 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.7573848 7573848 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.7595588 7595588 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.7595588 7595588 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.7623873 7623873 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.7623873 7623873 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.7698406 7698406 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.7698406 7698406 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.7736238 7736238 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.7736238 7736238 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.7969767 7969767 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.7969767 7969767 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8198962 8198962 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8198962 8198962 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8326127 8326127 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8326127 8326127 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8386190 8386190 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8386190 8386190 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8463325 8463325 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8463325 8463325 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8471650 8471650 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8471650 8471650 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8528540 8528540 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8528540 8528540 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8613255 8613255 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8613255 8613255 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8633790 8633790 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8633790 8633790 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8717423 8717423 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8717423 8717423 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8729824 8729824 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8729824 8729824 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8797119 8797119 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8797119 8797119 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8939617 8939617 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8939617 8939617 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.8993751 8993751 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.8993751 8993751 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.9155653 9155653 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.9155653 9155653 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.9282731 9282731 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.9282731 9282731 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.9545604 9545604 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.9545604 9545604 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.9771119 9771119 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.9771119 9771119 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.9828990 9828990 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.9828990 9828990 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.9831709 9831709 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.9831709 9831709 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.9896556 9896556 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.9896556 9896556 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.9925985 9925985 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.9925985 9925985 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.9934152 9934152 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.9934152 9934152 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.9946468 9946468 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.9946468 9946468 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.9984494 9984494 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.9984494 9984494 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10042370 10042370 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10042370 10042370 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10055238 10055238 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10055238 10055238 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10148729 10148729 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10148729 10148729 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10151057 10151057 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10151057 10151057 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10204114 10204114 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10204114 10204114 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10239432 10239432 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10239432 10239432 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10372958 10372958 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10372958 10372958 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10468849 10468849 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10468849 10468849 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10495410 10495410 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10495410 10495410 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10544829 10544829 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10544829 10544829 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10547359 10547359 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10547359 10547359 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10570872 10570872 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10570872 10570872 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10575440 10575440 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10575440 10575440 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10789561 10789561 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10789561 10789561 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10795173 10795173 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10795173 10795173 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10871208 10871208 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10871208 10871208 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.10990283 10990283 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.10990283 10990283 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.11058835 11058835 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.11058835 11058835 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.11500556 11500556 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.11500556 11500556 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.11583197 11583197 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.11583197 11583197 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.11676831 11676831 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.11676831 11676831 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.11708158 11708158 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.11708158 11708158 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.11729681 11729681 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.11729681 11729681 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.11730048 11730048 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.11730048 11730048 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.11966348 11966348 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.11966348 11966348 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.11977391 11977391 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.11977391 11977391 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12012295 12012295 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12012295 12012295 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12113321 12113321 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12113321 12113321 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12138767 12138767 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12138767 12138767 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12181644 12181644 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12181644 12181644 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12265786 12265786 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12265786 12265786 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12460435 12460435 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12460435 12460435 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12462931 12462931 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12462931 12462931 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12540398 12540398 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12540398 12540398 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12552916 12552916 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12552916 12552916 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12620681 12620681 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12620681 12620681 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12637302 12637302 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12637302 12637302 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12728166 12728166 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12728166 12728166 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12738461 12738461 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12738461 12738461 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12747278 12747278 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12747278 12747278 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12817395 12817395 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12817395 12817395 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12871030 12871030 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12871030 12871030 length=1' because it was < 2 characters long Warning: skipping read 'SRR6470363.12874011 12874011 length=1' because length (1) <= # seed mismatches (0) Warning: skipping read 'SRR6470363.12874011 12874011 length=1' because it was < 2 characters long Multiseed full-index search: 00:02:10 12906564 reads; of these: 12906564 (100.00%) were unpaired; of these: 1453944 (11.27%) aligned 0 times 9748319 (75.53%) aligned exactly 1 time 1704301 (13.20%) aligned >1 times 88.73% overall alignment rate Time searching: 00:02:10 Overall time: 00:02:10 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 4026322 / 11452620 = 0.3516 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Thu, 08 Feb 2018 18:44:29: # Command line: callpeak -t SRX3560290.bam -f BAM -g 12100000 -n SRX3560290.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX3560290.10 # format = BAM # ChIP-seq file = ['SRX3560290.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 08 Feb 2018 18:44:29: # Command line: callpeak -t SRX3560290.bam -f BAM -g 12100000 -n SRX3560290.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX3560290.20 # format = BAM # ChIP-seq file = ['SRX3560290.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 08 Feb 2018 18:44:29: # Command line: callpeak -t SRX3560290.bam -f BAM -g 12100000 -n SRX3560290.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX3560290.05 # format = BAM # ChIP-seq file = ['SRX3560290.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 08 Feb 2018 18:44:29: #1 read tag files... INFO @ Thu, 08 Feb 2018 18:44:29: #1 read tag files... INFO @ Thu, 08 Feb 2018 18:44:29: #1 read tag files... INFO @ Thu, 08 Feb 2018 18:44:29: #1 read treatment tags... INFO @ Thu, 08 Feb 2018 18:44:29: #1 read treatment tags... INFO @ Thu, 08 Feb 2018 18:44:29: #1 read treatment tags... INFO @ Thu, 08 Feb 2018 18:44:36: 1000000 INFO @ Thu, 08 Feb 2018 18:44:37: 1000000 INFO @ Thu, 08 Feb 2018 18:44:37: 1000000 INFO @ Thu, 08 Feb 2018 18:44:44: 2000000 INFO @ Thu, 08 Feb 2018 18:44:44: 2000000 INFO @ Thu, 08 Feb 2018 18:44:44: 2000000 INFO @ Thu, 08 Feb 2018 18:44:51: 3000000 INFO @ Thu, 08 Feb 2018 18:44:52: 3000000 INFO @ Thu, 08 Feb 2018 18:44:52: 3000000 INFO @ Thu, 08 Feb 2018 18:44:59: 4000000 INFO @ Thu, 08 Feb 2018 18:45:00: 4000000 INFO @ Thu, 08 Feb 2018 18:45:00: 4000000 INFO @ Thu, 08 Feb 2018 18:45:06: 5000000 INFO @ Thu, 08 Feb 2018 18:45:07: 5000000 INFO @ Thu, 08 Feb 2018 18:45:07: 5000000 INFO @ Thu, 08 Feb 2018 18:45:14: 6000000 INFO @ Thu, 08 Feb 2018 18:45:16: 6000000 INFO @ Thu, 08 Feb 2018 18:45:16: 6000000 INFO @ Thu, 08 Feb 2018 18:45:21: 7000000 INFO @ Thu, 08 Feb 2018 18:45:23: 7000000 INFO @ Thu, 08 Feb 2018 18:45:24: 7000000 INFO @ Thu, 08 Feb 2018 18:45:25: #1 tag size is determined as 47 bps INFO @ Thu, 08 Feb 2018 18:45:25: #1 tag size = 47 INFO @ Thu, 08 Feb 2018 18:45:25: #1 total tags in treatment: 7426298 INFO @ Thu, 08 Feb 2018 18:45:25: #1 user defined the maximum tags... INFO @ Thu, 08 Feb 2018 18:45:25: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 08 Feb 2018 18:45:25: #1 tags after filtering in treatment: 7426298 INFO @ Thu, 08 Feb 2018 18:45:25: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 08 Feb 2018 18:45:25: #1 finished! INFO @ Thu, 08 Feb 2018 18:45:25: #2 Build Peak Model... INFO @ Thu, 08 Feb 2018 18:45:25: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 08 Feb 2018 18:45:25: #2 number of paired peaks: 0 WARNING @ Thu, 08 Feb 2018 18:45:25: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 08 Feb 2018 18:45:25: Process for pairing-model is terminated! cat: SRX3560290.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3560290.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3560290.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3560290.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Thu, 08 Feb 2018 18:45:26: #1 tag size is determined as 47 bps INFO @ Thu, 08 Feb 2018 18:45:26: #1 tag size = 47 INFO @ Thu, 08 Feb 2018 18:45:26: #1 total tags in treatment: 7426298 INFO @ Thu, 08 Feb 2018 18:45:26: #1 user defined the maximum tags... INFO @ Thu, 08 Feb 2018 18:45:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 08 Feb 2018 18:45:26: #1 tag size is determined as 47 bps INFO @ Thu, 08 Feb 2018 18:45:26: #1 tag size = 47 INFO @ Thu, 08 Feb 2018 18:45:26: #1 total tags in treatment: 7426298 INFO @ Thu, 08 Feb 2018 18:45:26: #1 user defined the maximum tags... INFO @ Thu, 08 Feb 2018 18:45:26: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 08 Feb 2018 18:45:27: #1 tags after filtering in treatment: 7426298 INFO @ Thu, 08 Feb 2018 18:45:27: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 08 Feb 2018 18:45:27: #1 finished! INFO @ Thu, 08 Feb 2018 18:45:27: #2 Build Peak Model... INFO @ Thu, 08 Feb 2018 18:45:27: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 08 Feb 2018 18:45:27: #1 tags after filtering in treatment: 7426298 INFO @ Thu, 08 Feb 2018 18:45:27: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 08 Feb 2018 18:45:27: #1 finished! INFO @ Thu, 08 Feb 2018 18:45:27: #2 Build Peak Model... INFO @ Thu, 08 Feb 2018 18:45:27: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 08 Feb 2018 18:45:27: #2 number of paired peaks: 0 WARNING @ Thu, 08 Feb 2018 18:45:27: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 08 Feb 2018 18:45:27: Process for pairing-model is terminated! cat: SRX3560290.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3560290.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3560290.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3560290.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Thu, 08 Feb 2018 18:45:27: #2 number of paired peaks: 0 WARNING @ Thu, 08 Feb 2018 18:45:27: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 08 Feb 2018 18:45:27: Process for pairing-model is terminated! cat: SRX3560290.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3560290.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3560290.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3560290.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。