Job ID = 2010210 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 18,041,499 reads read : 36,082,998 reads written : 18,041,499 reads 0-length : 18,041,499 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:03:13 18041499 reads; of these: 18041499 (100.00%) were unpaired; of these: 1300749 (7.21%) aligned 0 times 14896331 (82.57%) aligned exactly 1 time 1844419 (10.22%) aligned >1 times 92.79% overall alignment rate Time searching: 00:03:13 Overall time: 00:03:13 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 6208597 / 16740750 = 0.3709 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 21:58:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:58:06: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:58:06: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:58:07: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:58:07: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:58:07: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:58:08: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:58:08: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:58:08: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:58:13: 1000000 INFO @ Fri, 05 Jul 2019 21:58:16: 1000000 INFO @ Fri, 05 Jul 2019 21:58:17: 1000000 INFO @ Fri, 05 Jul 2019 21:58:20: 2000000 INFO @ Fri, 05 Jul 2019 21:58:24: 2000000 INFO @ Fri, 05 Jul 2019 21:58:25: 2000000 INFO @ Fri, 05 Jul 2019 21:58:28: 3000000 INFO @ Fri, 05 Jul 2019 21:58:32: 3000000 INFO @ Fri, 05 Jul 2019 21:58:33: 3000000 INFO @ Fri, 05 Jul 2019 21:58:35: 4000000 INFO @ Fri, 05 Jul 2019 21:58:40: 4000000 INFO @ Fri, 05 Jul 2019 21:58:42: 4000000 INFO @ Fri, 05 Jul 2019 21:58:42: 5000000 INFO @ Fri, 05 Jul 2019 21:58:49: 5000000 INFO @ Fri, 05 Jul 2019 21:58:49: 6000000 INFO @ Fri, 05 Jul 2019 21:58:50: 5000000 INFO @ Fri, 05 Jul 2019 21:58:56: 7000000 INFO @ Fri, 05 Jul 2019 21:58:57: 6000000 INFO @ Fri, 05 Jul 2019 21:58:58: 6000000 INFO @ Fri, 05 Jul 2019 21:59:03: 8000000 INFO @ Fri, 05 Jul 2019 21:59:06: 7000000 INFO @ Fri, 05 Jul 2019 21:59:06: 7000000 INFO @ Fri, 05 Jul 2019 21:59:11: 9000000 INFO @ Fri, 05 Jul 2019 21:59:14: 8000000 INFO @ Fri, 05 Jul 2019 21:59:15: 8000000 INFO @ Fri, 05 Jul 2019 21:59:18: 10000000 INFO @ Fri, 05 Jul 2019 21:59:21: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 21:59:21: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 21:59:21: #1 total tags in treatment: 10532153 INFO @ Fri, 05 Jul 2019 21:59:21: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:59:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:59:22: #1 tags after filtering in treatment: 10532153 INFO @ Fri, 05 Jul 2019 21:59:22: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:59:22: #1 finished! INFO @ Fri, 05 Jul 2019 21:59:22: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:59:22: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:59:22: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:59:22: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:59:22: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 21:59:22: 9000000 INFO @ Fri, 05 Jul 2019 21:59:23: 9000000 INFO @ Fri, 05 Jul 2019 21:59:30: 10000000 INFO @ Fri, 05 Jul 2019 21:59:32: 10000000 INFO @ Fri, 05 Jul 2019 21:59:34: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 21:59:34: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 21:59:34: #1 total tags in treatment: 10532153 INFO @ Fri, 05 Jul 2019 21:59:34: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:59:34: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:59:35: #1 tags after filtering in treatment: 10532153 INFO @ Fri, 05 Jul 2019 21:59:35: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:59:35: #1 finished! INFO @ Fri, 05 Jul 2019 21:59:35: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:59:35: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:59:36: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:59:36: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:59:36: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 21:59:36: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 21:59:36: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 21:59:36: #1 total tags in treatment: 10532153 INFO @ Fri, 05 Jul 2019 21:59:36: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:59:36: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:59:37: #1 tags after filtering in treatment: 10532153 INFO @ Fri, 05 Jul 2019 21:59:37: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:59:37: #1 finished! INFO @ Fri, 05 Jul 2019 21:59:37: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:59:37: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:59:37: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:59:37: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:59:37: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294582/SRX3294582.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。