Job ID = 2010197 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 14,652,076 reads read : 29,304,152 reads written : 14,652,076 reads 0-length : 14,652,076 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:02:39 14652076 reads; of these: 14652076 (100.00%) were unpaired; of these: 1019338 (6.96%) aligned 0 times 12135156 (82.82%) aligned exactly 1 time 1497582 (10.22%) aligned >1 times 93.04% overall alignment rate Time searching: 00:02:39 Overall time: 00:02:39 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 4456833 / 13632738 = 0.3269 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 21:52:04: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:52:04: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:52:04: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:52:05: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:52:05: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:52:05: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:52:06: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:52:06: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:52:06: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:52:14: 1000000 INFO @ Fri, 05 Jul 2019 21:52:14: 1000000 INFO @ Fri, 05 Jul 2019 21:52:15: 1000000 INFO @ Fri, 05 Jul 2019 21:52:22: 2000000 INFO @ Fri, 05 Jul 2019 21:52:23: 2000000 INFO @ Fri, 05 Jul 2019 21:52:23: 2000000 INFO @ Fri, 05 Jul 2019 21:52:30: 3000000 INFO @ Fri, 05 Jul 2019 21:52:31: 3000000 INFO @ Fri, 05 Jul 2019 21:52:32: 3000000 INFO @ Fri, 05 Jul 2019 21:52:38: 4000000 INFO @ Fri, 05 Jul 2019 21:52:39: 4000000 INFO @ Fri, 05 Jul 2019 21:52:41: 4000000 INFO @ Fri, 05 Jul 2019 21:52:46: 5000000 INFO @ Fri, 05 Jul 2019 21:52:47: 5000000 INFO @ Fri, 05 Jul 2019 21:52:50: 5000000 INFO @ Fri, 05 Jul 2019 21:52:53: 6000000 INFO @ Fri, 05 Jul 2019 21:52:55: 6000000 INFO @ Fri, 05 Jul 2019 21:53:00: 6000000 INFO @ Fri, 05 Jul 2019 21:53:01: 7000000 INFO @ Fri, 05 Jul 2019 21:53:03: 7000000 INFO @ Fri, 05 Jul 2019 21:53:08: 7000000 INFO @ Fri, 05 Jul 2019 21:53:09: 8000000 INFO @ Fri, 05 Jul 2019 21:53:11: 8000000 INFO @ Fri, 05 Jul 2019 21:53:17: 9000000 INFO @ Fri, 05 Jul 2019 21:53:17: 8000000 INFO @ Fri, 05 Jul 2019 21:53:18: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 21:53:18: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 21:53:18: #1 total tags in treatment: 9175905 INFO @ Fri, 05 Jul 2019 21:53:18: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:53:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:53:18: #1 tags after filtering in treatment: 9175905 INFO @ Fri, 05 Jul 2019 21:53:18: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:53:18: #1 finished! INFO @ Fri, 05 Jul 2019 21:53:18: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:53:18: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:53:19: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:53:19: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:53:19: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 21:53:19: 9000000 INFO @ Fri, 05 Jul 2019 21:53:21: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 21:53:21: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 21:53:21: #1 total tags in treatment: 9175905 INFO @ Fri, 05 Jul 2019 21:53:21: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:53:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:53:21: #1 tags after filtering in treatment: 9175905 INFO @ Fri, 05 Jul 2019 21:53:21: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:53:21: #1 finished! INFO @ Fri, 05 Jul 2019 21:53:21: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:53:21: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:53:21: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:53:21: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:53:21: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 21:53:26: 9000000 INFO @ Fri, 05 Jul 2019 21:53:27: #1 tag size is determined as 51 bps INFO @ Fri, 05 Jul 2019 21:53:27: #1 tag size = 51 INFO @ Fri, 05 Jul 2019 21:53:27: #1 total tags in treatment: 9175905 INFO @ Fri, 05 Jul 2019 21:53:27: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:53:27: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:53:27: #1 tags after filtering in treatment: 9175905 INFO @ Fri, 05 Jul 2019 21:53:27: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:53:27: #1 finished! INFO @ Fri, 05 Jul 2019 21:53:27: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:53:27: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:53:28: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:53:28: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:53:28: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3294570/SRX3294570.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。