Job ID = 5790841 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 17,147,796 reads read : 17,147,796 reads written : 17,147,796 rm: cannot remove ‘[DSE]RR*’: No such file or directory rm: cannot remove ‘/home/okishinya/ncbi/public/sra/SRR6055808.sra.cache’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:01:55 17147796 reads; of these: 17147796 (100.00%) were unpaired; of these: 1177466 (6.87%) aligned 0 times 10120254 (59.02%) aligned exactly 1 time 5850076 (34.12%) aligned >1 times 93.13% overall alignment rate Time searching: 00:01:55 Overall time: 00:01:55 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 8424212 / 15970330 = 0.5275 in library ' ' BAM に変換しました。 Bed ファイルを作成中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Apr 2020 07:54:16: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Apr 2020 07:54:16: #1 read tag files... INFO @ Wed, 22 Apr 2020 07:54:16: #1 read treatment tags... INFO @ Wed, 22 Apr 2020 07:54:21: 1000000 INFO @ Wed, 22 Apr 2020 07:54:26: 2000000 INFO @ Wed, 22 Apr 2020 07:54:31: 3000000 INFO @ Wed, 22 Apr 2020 07:54:37: 4000000 INFO @ Wed, 22 Apr 2020 07:54:42: 5000000 WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Apr 2020 07:54:46: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Apr 2020 07:54:46: #1 read tag files... INFO @ Wed, 22 Apr 2020 07:54:46: #1 read treatment tags... INFO @ Wed, 22 Apr 2020 07:54:47: 6000000 INFO @ Wed, 22 Apr 2020 07:54:52: 1000000 INFO @ Wed, 22 Apr 2020 07:54:52: 7000000 INFO @ Wed, 22 Apr 2020 07:54:55: #1 tag size is determined as 51 bps INFO @ Wed, 22 Apr 2020 07:54:55: #1 tag size = 51 INFO @ Wed, 22 Apr 2020 07:54:55: #1 total tags in treatment: 7546118 INFO @ Wed, 22 Apr 2020 07:54:55: #1 user defined the maximum tags... INFO @ Wed, 22 Apr 2020 07:54:55: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Apr 2020 07:54:56: #1 tags after filtering in treatment: 7546118 INFO @ Wed, 22 Apr 2020 07:54:56: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Apr 2020 07:54:56: #1 finished! INFO @ Wed, 22 Apr 2020 07:54:56: #2 Build Peak Model... INFO @ Wed, 22 Apr 2020 07:54:56: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Apr 2020 07:54:56: #2 number of paired peaks: 0 WARNING @ Wed, 22 Apr 2020 07:54:56: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 22 Apr 2020 07:54:56: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Wed, 22 Apr 2020 07:54:57: 2000000 INFO @ Wed, 22 Apr 2020 07:55:03: 3000000 INFO @ Wed, 22 Apr 2020 07:55:08: 4000000 INFO @ Wed, 22 Apr 2020 07:55:14: 5000000 BedGraph に変換中... WARNING: Skipping mount /opt/pkg/singularity/3.5.2/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container INFO @ Wed, 22 Apr 2020 07:55:16: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Wed, 22 Apr 2020 07:55:16: #1 read tag files... INFO @ Wed, 22 Apr 2020 07:55:16: #1 read treatment tags... INFO @ Wed, 22 Apr 2020 07:55:19: 6000000 INFO @ Wed, 22 Apr 2020 07:55:22: 1000000 INFO @ Wed, 22 Apr 2020 07:55:25: 7000000 INFO @ Wed, 22 Apr 2020 07:55:28: 2000000 INFO @ Wed, 22 Apr 2020 07:55:28: #1 tag size is determined as 51 bps INFO @ Wed, 22 Apr 2020 07:55:28: #1 tag size = 51 INFO @ Wed, 22 Apr 2020 07:55:28: #1 total tags in treatment: 7546118 INFO @ Wed, 22 Apr 2020 07:55:28: #1 user defined the maximum tags... INFO @ Wed, 22 Apr 2020 07:55:28: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Apr 2020 07:55:28: #1 tags after filtering in treatment: 7546118 INFO @ Wed, 22 Apr 2020 07:55:28: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Apr 2020 07:55:28: #1 finished! INFO @ Wed, 22 Apr 2020 07:55:28: #2 Build Peak Model... INFO @ Wed, 22 Apr 2020 07:55:28: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Apr 2020 07:55:28: #2 number of paired peaks: 0 WARNING @ Wed, 22 Apr 2020 07:55:28: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 22 Apr 2020 07:55:28: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Wed, 22 Apr 2020 07:55:33: 3000000 INFO @ Wed, 22 Apr 2020 07:55:38: 4000000 INFO @ Wed, 22 Apr 2020 07:55:43: 5000000 INFO @ Wed, 22 Apr 2020 07:55:49: 6000000 INFO @ Wed, 22 Apr 2020 07:55:54: 7000000 INFO @ Wed, 22 Apr 2020 07:55:57: #1 tag size is determined as 51 bps INFO @ Wed, 22 Apr 2020 07:55:57: #1 tag size = 51 INFO @ Wed, 22 Apr 2020 07:55:57: #1 total tags in treatment: 7546118 INFO @ Wed, 22 Apr 2020 07:55:57: #1 user defined the maximum tags... INFO @ Wed, 22 Apr 2020 07:55:57: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Wed, 22 Apr 2020 07:55:57: #1 tags after filtering in treatment: 7546118 INFO @ Wed, 22 Apr 2020 07:55:57: #1 Redundant rate of treatment: 0.00 INFO @ Wed, 22 Apr 2020 07:55:57: #1 finished! INFO @ Wed, 22 Apr 2020 07:55:57: #2 Build Peak Model... INFO @ Wed, 22 Apr 2020 07:55:57: #2 looking for paired plus/minus strand peaks... INFO @ Wed, 22 Apr 2020 07:55:57: #2 number of paired peaks: 0 WARNING @ Wed, 22 Apr 2020 07:55:57: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Wed, 22 Apr 2020 07:55:57: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX3202737/SRX3202737.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。