Job ID = 10488210 sra ファイルのダウンロード中... Completed: 343231K bytes transferred in 12 seconds (229785K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 15128596 spots for /home/okishinya/chipatlas/results/sacCer3/SRX3188111/SRR6039983.sra Written 15128596 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:02:39 15128596 reads; of these: 15128596 (100.00%) were unpaired; of these: 2446039 (16.17%) aligned 0 times 10910333 (72.12%) aligned exactly 1 time 1772224 (11.71%) aligned >1 times 83.83% overall alignment rate Time searching: 00:02:39 Overall time: 00:02:39 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 4327620 / 12682557 = 0.3412 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Sun, 18 Mar 2018 12:22:41: # Command line: callpeak -t SRX3188111.bam -f BAM -g 12100000 -n SRX3188111.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX3188111.20 # format = BAM # ChIP-seq file = ['SRX3188111.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 18 Mar 2018 12:22:41: #1 read tag files... INFO @ Sun, 18 Mar 2018 12:22:41: #1 read treatment tags... INFO @ Sun, 18 Mar 2018 12:22:41: # Command line: callpeak -t SRX3188111.bam -f BAM -g 12100000 -n SRX3188111.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX3188111.05 # format = BAM # ChIP-seq file = ['SRX3188111.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 18 Mar 2018 12:22:41: #1 read tag files... INFO @ Sun, 18 Mar 2018 12:22:41: #1 read treatment tags... INFO @ Sun, 18 Mar 2018 12:22:41: # Command line: callpeak -t SRX3188111.bam -f BAM -g 12100000 -n SRX3188111.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX3188111.10 # format = BAM # ChIP-seq file = ['SRX3188111.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Sun, 18 Mar 2018 12:22:41: #1 read tag files... INFO @ Sun, 18 Mar 2018 12:22:41: #1 read treatment tags... INFO @ Sun, 18 Mar 2018 12:22:48: 1000000 INFO @ Sun, 18 Mar 2018 12:22:48: 1000000 INFO @ Sun, 18 Mar 2018 12:22:48: 1000000 INFO @ Sun, 18 Mar 2018 12:22:55: 2000000 INFO @ Sun, 18 Mar 2018 12:22:55: 2000000 INFO @ Sun, 18 Mar 2018 12:22:55: 2000000 INFO @ Sun, 18 Mar 2018 12:23:02: 3000000 INFO @ Sun, 18 Mar 2018 12:23:02: 3000000 INFO @ Sun, 18 Mar 2018 12:23:03: 3000000 INFO @ Sun, 18 Mar 2018 12:23:09: 4000000 INFO @ Sun, 18 Mar 2018 12:23:09: 4000000 INFO @ Sun, 18 Mar 2018 12:23:10: 4000000 INFO @ Sun, 18 Mar 2018 12:23:16: 5000000 INFO @ Sun, 18 Mar 2018 12:23:16: 5000000 INFO @ Sun, 18 Mar 2018 12:23:17: 5000000 INFO @ Sun, 18 Mar 2018 12:23:23: 6000000 INFO @ Sun, 18 Mar 2018 12:23:23: 6000000 INFO @ Sun, 18 Mar 2018 12:23:24: 6000000 INFO @ Sun, 18 Mar 2018 12:23:30: 7000000 INFO @ Sun, 18 Mar 2018 12:23:30: 7000000 INFO @ Sun, 18 Mar 2018 12:23:31: 7000000 INFO @ Sun, 18 Mar 2018 12:23:36: 8000000 INFO @ Sun, 18 Mar 2018 12:23:36: 8000000 INFO @ Sun, 18 Mar 2018 12:23:39: 8000000 INFO @ Sun, 18 Mar 2018 12:23:39: #1 tag size is determined as 51 bps INFO @ Sun, 18 Mar 2018 12:23:39: #1 tag size is determined as 51 bps INFO @ Sun, 18 Mar 2018 12:23:39: #1 tag size = 51 INFO @ Sun, 18 Mar 2018 12:23:39: #1 tag size = 51 INFO @ Sun, 18 Mar 2018 12:23:39: #1 total tags in treatment: 8354937 INFO @ Sun, 18 Mar 2018 12:23:39: #1 total tags in treatment: 8354937 INFO @ Sun, 18 Mar 2018 12:23:39: #1 user defined the maximum tags... INFO @ Sun, 18 Mar 2018 12:23:39: #1 user defined the maximum tags... INFO @ Sun, 18 Mar 2018 12:23:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 18 Mar 2018 12:23:39: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 18 Mar 2018 12:23:39: #1 tags after filtering in treatment: 8354937 INFO @ Sun, 18 Mar 2018 12:23:39: #1 tags after filtering in treatment: 8354937 INFO @ Sun, 18 Mar 2018 12:23:39: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 18 Mar 2018 12:23:39: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 18 Mar 2018 12:23:39: #1 finished! INFO @ Sun, 18 Mar 2018 12:23:39: #1 finished! INFO @ Sun, 18 Mar 2018 12:23:39: #2 Build Peak Model... INFO @ Sun, 18 Mar 2018 12:23:39: #2 Build Peak Model... INFO @ Sun, 18 Mar 2018 12:23:39: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 18 Mar 2018 12:23:39: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 18 Mar 2018 12:23:39: #2 number of paired peaks: 0 WARNING @ Sun, 18 Mar 2018 12:23:39: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 18 Mar 2018 12:23:39: Process for pairing-model is terminated! INFO @ Sun, 18 Mar 2018 12:23:39: #2 number of paired peaks: 0 WARNING @ Sun, 18 Mar 2018 12:23:39: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 18 Mar 2018 12:23:39: Process for pairing-model is terminated! cat: SRX3188111.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません cat: SRX3188111.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3188111.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3188111.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3188111.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis CompletedMACS2peakCalling needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3188111.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3188111.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3188111.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Sun, 18 Mar 2018 12:23:41: #1 tag size is determined as 51 bps INFO @ Sun, 18 Mar 2018 12:23:41: #1 tag size = 51 INFO @ Sun, 18 Mar 2018 12:23:41: #1 total tags in treatment: 8354937 INFO @ Sun, 18 Mar 2018 12:23:41: #1 user defined the maximum tags... INFO @ Sun, 18 Mar 2018 12:23:41: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Sun, 18 Mar 2018 12:23:41: #1 tags after filtering in treatment: 8354937 INFO @ Sun, 18 Mar 2018 12:23:41: #1 Redundant rate of treatment: 0.00 INFO @ Sun, 18 Mar 2018 12:23:41: #1 finished! INFO @ Sun, 18 Mar 2018 12:23:41: #2 Build Peak Model... INFO @ Sun, 18 Mar 2018 12:23:41: #2 looking for paired plus/minus strand peaks... INFO @ Sun, 18 Mar 2018 12:23:42: #2 number of paired peaks: 0 WARNING @ Sun, 18 Mar 2018 12:23:42: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Sun, 18 Mar 2018 12:23:42: Process for pairing-model is terminated! cat: SRX3188111.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX3188111.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3188111.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX3188111.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。