Job ID = 11296201 sra ファイルのダウンロード中... Completed: 364512K bytes transferred in 13 seconds (220205K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Read 13614407 spots for /home/okishinya/chipatlas/results/sacCer3/SRX2969168/SRR5770155.sra Written 13614407 spots for /home/okishinya/chipatlas/results/sacCer3/SRX2969168/SRR5770155.sra rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:03:14 13614407 reads; of these: 13614407 (100.00%) were unpaired; of these: 478230 (3.51%) aligned 0 times 11787943 (86.58%) aligned exactly 1 time 1348234 (9.90%) aligned >1 times 96.49% overall alignment rate Time searching: 00:03:14 Overall time: 00:03:14 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 3504967 / 13136177 = 0.2668 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Mon, 05 Nov 2018 17:43:08: # Command line: callpeak -t SRX2969168.bam -f BAM -g 12100000 -n SRX2969168.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2969168.05 # format = BAM # ChIP-seq file = ['SRX2969168.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 05 Nov 2018 17:43:08: # Command line: callpeak -t SRX2969168.bam -f BAM -g 12100000 -n SRX2969168.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2969168.10 # format = BAM # ChIP-seq file = ['SRX2969168.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 05 Nov 2018 17:43:08: #1 read tag files... INFO @ Mon, 05 Nov 2018 17:43:08: #1 read tag files... INFO @ Mon, 05 Nov 2018 17:43:08: #1 read treatment tags... INFO @ Mon, 05 Nov 2018 17:43:08: #1 read treatment tags... INFO @ Mon, 05 Nov 2018 17:43:08: # Command line: callpeak -t SRX2969168.bam -f BAM -g 12100000 -n SRX2969168.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2969168.20 # format = BAM # ChIP-seq file = ['SRX2969168.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Mon, 05 Nov 2018 17:43:08: #1 read tag files... INFO @ Mon, 05 Nov 2018 17:43:08: #1 read treatment tags... INFO @ Mon, 05 Nov 2018 17:43:16: 1000000 INFO @ Mon, 05 Nov 2018 17:43:16: 1000000 INFO @ Mon, 05 Nov 2018 17:43:16: 1000000 INFO @ Mon, 05 Nov 2018 17:43:23: 2000000 INFO @ Mon, 05 Nov 2018 17:43:23: 2000000 INFO @ Mon, 05 Nov 2018 17:43:23: 2000000 INFO @ Mon, 05 Nov 2018 17:43:31: 3000000 INFO @ Mon, 05 Nov 2018 17:43:31: 3000000 INFO @ Mon, 05 Nov 2018 17:43:31: 3000000 INFO @ Mon, 05 Nov 2018 17:43:38: 4000000 INFO @ Mon, 05 Nov 2018 17:43:39: 4000000 INFO @ Mon, 05 Nov 2018 17:43:39: 4000000 INFO @ Mon, 05 Nov 2018 17:43:46: 5000000 INFO @ Mon, 05 Nov 2018 17:43:46: 5000000 INFO @ Mon, 05 Nov 2018 17:43:46: 5000000 INFO @ Mon, 05 Nov 2018 17:43:54: 6000000 INFO @ Mon, 05 Nov 2018 17:43:54: 6000000 INFO @ Mon, 05 Nov 2018 17:43:54: 6000000 INFO @ Mon, 05 Nov 2018 17:44:01: 7000000 INFO @ Mon, 05 Nov 2018 17:44:01: 7000000 INFO @ Mon, 05 Nov 2018 17:44:01: 7000000 INFO @ Mon, 05 Nov 2018 17:44:09: 8000000 INFO @ Mon, 05 Nov 2018 17:44:09: 8000000 INFO @ Mon, 05 Nov 2018 17:44:09: 8000000 INFO @ Mon, 05 Nov 2018 17:44:16: 9000000 INFO @ Mon, 05 Nov 2018 17:44:16: 9000000 INFO @ Mon, 05 Nov 2018 17:44:16: 9000000 INFO @ Mon, 05 Nov 2018 17:44:21: #1 tag size is determined as 50 bps INFO @ Mon, 05 Nov 2018 17:44:21: #1 tag size = 50 INFO @ Mon, 05 Nov 2018 17:44:21: #1 total tags in treatment: 9631210 INFO @ Mon, 05 Nov 2018 17:44:21: #1 user defined the maximum tags... INFO @ Mon, 05 Nov 2018 17:44:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 05 Nov 2018 17:44:21: #1 tag size is determined as 50 bps INFO @ Mon, 05 Nov 2018 17:44:21: #1 tag size = 50 INFO @ Mon, 05 Nov 2018 17:44:21: #1 total tags in treatment: 9631210 INFO @ Mon, 05 Nov 2018 17:44:21: #1 user defined the maximum tags... INFO @ Mon, 05 Nov 2018 17:44:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 05 Nov 2018 17:44:21: #1 tag size is determined as 50 bps INFO @ Mon, 05 Nov 2018 17:44:21: #1 tag size = 50 INFO @ Mon, 05 Nov 2018 17:44:21: #1 total tags in treatment: 9631210 INFO @ Mon, 05 Nov 2018 17:44:21: #1 user defined the maximum tags... INFO @ Mon, 05 Nov 2018 17:44:21: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Mon, 05 Nov 2018 17:44:21: #1 tags after filtering in treatment: 9631210 INFO @ Mon, 05 Nov 2018 17:44:21: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 05 Nov 2018 17:44:21: #1 finished! INFO @ Mon, 05 Nov 2018 17:44:21: #2 Build Peak Model... INFO @ Mon, 05 Nov 2018 17:44:21: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 05 Nov 2018 17:44:21: #1 tags after filtering in treatment: 9631210 INFO @ Mon, 05 Nov 2018 17:44:21: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 05 Nov 2018 17:44:21: #1 finished! INFO @ Mon, 05 Nov 2018 17:44:21: #2 Build Peak Model... INFO @ Mon, 05 Nov 2018 17:44:21: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 05 Nov 2018 17:44:21: #1 tags after filtering in treatment: 9631210 INFO @ Mon, 05 Nov 2018 17:44:21: #1 Redundant rate of treatment: 0.00 INFO @ Mon, 05 Nov 2018 17:44:21: #1 finished! INFO @ Mon, 05 Nov 2018 17:44:21: #2 Build Peak Model... INFO @ Mon, 05 Nov 2018 17:44:21: #2 looking for paired plus/minus strand peaks... INFO @ Mon, 05 Nov 2018 17:44:22: #2 number of paired peaks: 0 WARNING @ Mon, 05 Nov 2018 17:44:22: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 05 Nov 2018 17:44:22: Process for pairing-model is terminated! cat: SRX2969168.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません INFO @ Mon, 05 Nov 2018 17:44:22: #2 number of paired peaks: 0 WARNING @ Mon, 05 Nov 2018 17:44:22: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 05 Nov 2018 17:44:22: Process for pairing-model is terminated! cat: SRX2969168.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません INFO @ Mon, 05 Nov 2018 17:44:22: #2 number of paired peaks: 0 WARNING @ Mon, 05 Nov 2018 17:44:22: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Mon, 05 Nov 2018 17:44:22: Process for pairing-model is terminated! cat: SRX2969168.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis pass1 - making usageList (0 chroms): 1 millis pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) needLargeMem: trying to allocate 0 bytes (limit: 17179869184) needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2969168.20_model.r'rm: cannot remove `SRX2969168.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2969168.05_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2969168.20_*.xls': そのようなファイルやディレクトリはありません : そのようなファイルやディレクトリはありません rm: cannot remove `SRX2969168.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2969168.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2969168.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2969168.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2969168.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling CompletedMACS2peakCalling CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。