Job ID = 2010103 sra ファイルのダウンロード中... Read layout: SINGLE fastq に変換中... spots read : 21,039,637 reads read : 42,079,274 reads written : 21,039,637 reads 0-length : 21,039,637 rm: cannot remove ‘[DSE]RR*’: No such file or directory fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:02:33 21039637 reads; of these: 21039637 (100.00%) were unpaired; of these: 11017464 (52.37%) aligned 0 times 8659090 (41.16%) aligned exactly 1 time 1363083 (6.48%) aligned >1 times 47.63% overall alignment rate Time searching: 00:02:33 Overall time: 00:02:33 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 8 files... [bam_rmdupse_core] 2540386 / 10022173 = 0.2535 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Fri, 05 Jul 2019 21:28:18: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.05 -q 1e-05 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.05 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:28:18: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:28:18: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:28:19: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.10 -q 1e-10 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.10 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:28:19: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:28:19: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:28:20: # Command line: callpeak -t /home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.bam -f BAM -g 12100000 -n /home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.20 -q 1e-20 # ARGUMENTS LIST: # name = /home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.20 # format = BAM # ChIP-seq file = ['/home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Fri, 05 Jul 2019 21:28:20: #1 read tag files... INFO @ Fri, 05 Jul 2019 21:28:20: #1 read treatment tags... INFO @ Fri, 05 Jul 2019 21:28:25: 1000000 INFO @ Fri, 05 Jul 2019 21:28:28: 1000000 INFO @ Fri, 05 Jul 2019 21:28:28: 1000000 INFO @ Fri, 05 Jul 2019 21:28:33: 2000000 INFO @ Fri, 05 Jul 2019 21:28:36: 2000000 INFO @ Fri, 05 Jul 2019 21:28:36: 2000000 INFO @ Fri, 05 Jul 2019 21:28:40: 3000000 INFO @ Fri, 05 Jul 2019 21:28:44: 3000000 INFO @ Fri, 05 Jul 2019 21:28:44: 3000000 INFO @ Fri, 05 Jul 2019 21:28:47: 4000000 INFO @ Fri, 05 Jul 2019 21:28:51: 4000000 INFO @ Fri, 05 Jul 2019 21:28:52: 4000000 INFO @ Fri, 05 Jul 2019 21:28:54: 5000000 INFO @ Fri, 05 Jul 2019 21:28:59: 5000000 INFO @ Fri, 05 Jul 2019 21:29:00: 5000000 INFO @ Fri, 05 Jul 2019 21:29:01: 6000000 INFO @ Fri, 05 Jul 2019 21:29:06: 6000000 INFO @ Fri, 05 Jul 2019 21:29:07: 6000000 INFO @ Fri, 05 Jul 2019 21:29:08: 7000000 INFO @ Fri, 05 Jul 2019 21:29:11: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 21:29:11: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 21:29:11: #1 total tags in treatment: 7481787 INFO @ Fri, 05 Jul 2019 21:29:11: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:29:11: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:29:11: #1 tags after filtering in treatment: 7481787 INFO @ Fri, 05 Jul 2019 21:29:11: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:29:11: #1 finished! INFO @ Fri, 05 Jul 2019 21:29:11: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:29:11: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:29:12: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:29:12: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:29:12: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.05_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.05_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.05_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.05_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 21:29:13: 7000000 INFO @ Fri, 05 Jul 2019 21:29:15: 7000000 INFO @ Fri, 05 Jul 2019 21:29:17: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 21:29:17: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 21:29:17: #1 total tags in treatment: 7481787 INFO @ Fri, 05 Jul 2019 21:29:17: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:29:17: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:29:17: #1 tags after filtering in treatment: 7481787 INFO @ Fri, 05 Jul 2019 21:29:17: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:29:17: #1 finished! INFO @ Fri, 05 Jul 2019 21:29:17: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:29:17: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:29:18: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:29:18: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:29:18: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.20_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.20_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.20_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.20_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling INFO @ Fri, 05 Jul 2019 21:29:18: #1 tag size is determined as 50 bps INFO @ Fri, 05 Jul 2019 21:29:18: #1 tag size = 50 INFO @ Fri, 05 Jul 2019 21:29:18: #1 total tags in treatment: 7481787 INFO @ Fri, 05 Jul 2019 21:29:18: #1 user defined the maximum tags... INFO @ Fri, 05 Jul 2019 21:29:18: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Fri, 05 Jul 2019 21:29:18: #1 tags after filtering in treatment: 7481787 INFO @ Fri, 05 Jul 2019 21:29:18: #1 Redundant rate of treatment: 0.00 INFO @ Fri, 05 Jul 2019 21:29:18: #1 finished! INFO @ Fri, 05 Jul 2019 21:29:18: #2 Build Peak Model... INFO @ Fri, 05 Jul 2019 21:29:18: #2 looking for paired plus/minus strand peaks... INFO @ Fri, 05 Jul 2019 21:29:19: #2 number of paired peaks: 0 WARNING @ Fri, 05 Jul 2019 21:29:19: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Fri, 05 Jul 2019 21:29:19: Process for pairing-model is terminated! cut: /home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.10_peaks.narrowPeak: No such file or directory pass1 - making usageList (0 chroms): 2 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.10_model.r’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.10_*.xls’: No such file or directory rm: cannot remove ‘/home/okishinya/chipatlas/results/sacCer3/SRX2772187/SRX2772187.10_peaks.narrowPeak’: No such file or directory CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。