Job ID = 10608990 sra ファイルのダウンロード中... Completed: 1059973K bytes transferred in 53 seconds (163533K bits/sec), in 1 file. sra ファイルのダウンロードが完了しました。 Read layout: SINGLE fastq に変換中... Written 33193883 spots for /home/okishinya/chipatlas/results/sacCer3/SRX2745384/SRR5457315.sra Written 33193883 spots total rm: cannot remove `[DSE]RX*': そのようなファイルやディレクトリはありません rm: cannot remove `[DSE]RR*.fastq': そのようなファイルやディレクトリはありません fastq に変換しました。 bowtie でマッピング中... Time loading reference: 00:00:00 Time loading forward index: 00:00:00 Time loading mirror index: 00:00:00 Multiseed full-index search: 00:08:12 33193883 reads; of these: 33193883 (100.00%) were unpaired; of these: 5440962 (16.39%) aligned 0 times 19673467 (59.27%) aligned exactly 1 time 8079454 (24.34%) aligned >1 times 83.61% overall alignment rate Time searching: 00:08:12 Overall time: 00:08:12 マッピングが完了しました。 samtools でBAM に変換中... [samopen] SAM header is present: 17 sequences. [bam_sort_core] merging from 12 files... [bam_rmdupse_core] 21695854 / 27752921 = 0.7818 in library ' ' BAM に変換しました。 Bed ファイルを作成中... BedGraph に変換中... INFO @ Thu, 03 May 2018 23:10:19: # Command line: callpeak -t SRX2745384.bam -f BAM -g 12100000 -n SRX2745384.20 -q 1e-20 # ARGUMENTS LIST: # name = SRX2745384.20 # format = BAM # ChIP-seq file = ['SRX2745384.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-20 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 03 May 2018 23:10:19: # Command line: callpeak -t SRX2745384.bam -f BAM -g 12100000 -n SRX2745384.10 -q 1e-10 # ARGUMENTS LIST: # name = SRX2745384.10 # format = BAM # ChIP-seq file = ['SRX2745384.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-10 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 03 May 2018 23:10:19: # Command line: callpeak -t SRX2745384.bam -f BAM -g 12100000 -n SRX2745384.05 -q 1e-05 # ARGUMENTS LIST: # name = SRX2745384.05 # format = BAM # ChIP-seq file = ['SRX2745384.bam'] # control file = None # effective genome size = 1.21e+07 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 1.00e-05 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 10000 bps # Broad region calling is off # Paired-End mode is off INFO @ Thu, 03 May 2018 23:10:19: #1 read tag files... INFO @ Thu, 03 May 2018 23:10:19: #1 read tag files... INFO @ Thu, 03 May 2018 23:10:19: #1 read tag files... INFO @ Thu, 03 May 2018 23:10:19: #1 read treatment tags... INFO @ Thu, 03 May 2018 23:10:19: #1 read treatment tags... INFO @ Thu, 03 May 2018 23:10:19: #1 read treatment tags... INFO @ Thu, 03 May 2018 23:10:26: 1000000 INFO @ Thu, 03 May 2018 23:10:26: 1000000 INFO @ Thu, 03 May 2018 23:10:26: 1000000 INFO @ Thu, 03 May 2018 23:10:33: 2000000 INFO @ Thu, 03 May 2018 23:10:33: 2000000 INFO @ Thu, 03 May 2018 23:10:33: 2000000 INFO @ Thu, 03 May 2018 23:10:40: 3000000 INFO @ Thu, 03 May 2018 23:10:41: 3000000 INFO @ Thu, 03 May 2018 23:10:41: 3000000 INFO @ Thu, 03 May 2018 23:10:46: 4000000 INFO @ Thu, 03 May 2018 23:10:48: 4000000 INFO @ Thu, 03 May 2018 23:10:48: 4000000 INFO @ Thu, 03 May 2018 23:10:54: 5000000 INFO @ Thu, 03 May 2018 23:10:55: 5000000 INFO @ Thu, 03 May 2018 23:10:55: 5000000 INFO @ Thu, 03 May 2018 23:11:00: 6000000 INFO @ Thu, 03 May 2018 23:11:01: #1 tag size is determined as 50 bps INFO @ Thu, 03 May 2018 23:11:01: #1 tag size = 50 INFO @ Thu, 03 May 2018 23:11:01: #1 total tags in treatment: 6057067 INFO @ Thu, 03 May 2018 23:11:01: #1 user defined the maximum tags... INFO @ Thu, 03 May 2018 23:11:01: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 03 May 2018 23:11:01: #1 tags after filtering in treatment: 6057067 INFO @ Thu, 03 May 2018 23:11:01: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 03 May 2018 23:11:01: #1 finished! INFO @ Thu, 03 May 2018 23:11:01: #2 Build Peak Model... INFO @ Thu, 03 May 2018 23:11:01: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 03 May 2018 23:11:01: #2 number of paired peaks: 0 WARNING @ Thu, 03 May 2018 23:11:01: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 03 May 2018 23:11:01: Process for pairing-model is terminated! cat: SRX2745384.10_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: cannot remove `SRX2745384.10_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2745384.10_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2745384.10_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling INFO @ Thu, 03 May 2018 23:11:02: 6000000 INFO @ Thu, 03 May 2018 23:11:02: 6000000 INFO @ Thu, 03 May 2018 23:11:02: #1 tag size is determined as 50 bps INFO @ Thu, 03 May 2018 23:11:02: #1 tag size = 50 INFO @ Thu, 03 May 2018 23:11:02: #1 total tags in treatment: 6057067 INFO @ Thu, 03 May 2018 23:11:02: #1 user defined the maximum tags... INFO @ Thu, 03 May 2018 23:11:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 03 May 2018 23:11:02: #1 tag size is determined as 50 bps INFO @ Thu, 03 May 2018 23:11:02: #1 tag size = 50 INFO @ Thu, 03 May 2018 23:11:02: #1 total tags in treatment: 6057067 INFO @ Thu, 03 May 2018 23:11:02: #1 user defined the maximum tags... INFO @ Thu, 03 May 2018 23:11:02: #1 filter out redundant tags at the same location and the same strand by allowing at most 1 tag(s) INFO @ Thu, 03 May 2018 23:11:03: #1 tags after filtering in treatment: 6057067 INFO @ Thu, 03 May 2018 23:11:03: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 03 May 2018 23:11:03: #1 finished! INFO @ Thu, 03 May 2018 23:11:03: #2 Build Peak Model... INFO @ Thu, 03 May 2018 23:11:03: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 03 May 2018 23:11:03: #1 tags after filtering in treatment: 6057067 INFO @ Thu, 03 May 2018 23:11:03: #1 Redundant rate of treatment: 0.00 INFO @ Thu, 03 May 2018 23:11:03: #1 finished! INFO @ Thu, 03 May 2018 23:11:03: #2 Build Peak Model... INFO @ Thu, 03 May 2018 23:11:03: #2 looking for paired plus/minus strand peaks... INFO @ Thu, 03 May 2018 23:11:03: #2 number of paired peaks: 0 WARNING @ Thu, 03 May 2018 23:11:03: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 03 May 2018 23:11:03: Process for pairing-model is terminated! INFO @ Thu, 03 May 2018 23:11:03: #2 number of paired peaks: 0 WARNING @ Thu, 03 May 2018 23:11:03: Too few paired peaks (0) so I can not build the model! Broader your MFOLD range parameter may erase this error. If it still can't build the model, we suggest to use --nomodel and --extsize 147 or other fixed number instead. WARNING @ Thu, 03 May 2018 23:11:03: Process for pairing-model is terminated! cat: SRX2745384.05_peaks.narrowPeak: そのようなファイルやディレクトリはありません cat: SRX2745384.20_peaks.narrowPeak: そのようなファイルやディレクトリはありません pass1 - making usageList (0 chroms): 1 millis needLargeMem: trying to allocate 0 bytes (limit: 17179869184) rm: pass1 - making usageList (0 chroms)cannot remove `SRX2745384.05_model.r': 1 millis : そのようなファイルやディレクトリはありません rm: cannot remove `SRX2745384.05_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2745384.05_peaks.narrowPeak': そのようなファイルやディレクトリはありません needLargeMem: trying to allocate 0 bytes (limit: 17179869184) CompletedMACS2peakCalling rm: cannot remove `SRX2745384.20_model.r': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2745384.20_*.xls': そのようなファイルやディレクトリはありません rm: cannot remove `SRX2745384.20_peaks.narrowPeak': そのようなファイルやディレクトリはありません CompletedMACS2peakCalling BedGraph に変換しました。 BigWig に変換中... BigWig に変換しました。